Query psy9336
Match_columns 99
No_of_seqs 105 out of 253
Neff 5.0
Searched_HMMs 13730
Date Sat Aug 17 00:42:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9336.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9336hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b5ga1 d.108.1.1 (A:3-169) Di 61.8 2.2 0.00016 25.9 2.3 35 27-62 121-155 (167)
2 d2beia1 d.108.1.1 (A:3-169) Di 51.6 4.4 0.00032 24.1 2.4 35 27-62 121-155 (167)
3 d1qhqa_ b.6.1.1 (A:) Auracyani 46.6 2.3 0.00017 26.4 0.4 16 81-96 114-129 (139)
4 d1k8rb_ d.15.1.5 (B:) Protein 36.5 10 0.00074 23.4 2.3 48 37-95 22-69 (95)
5 d1jg5a_ d.205.1.1 (A:) GTP cyc 29.8 17 0.0012 21.9 2.4 35 30-64 45-79 (83)
6 d1wwza1 d.108.1.1 (A:1-157) Hy 24.1 30 0.0022 19.9 2.9 31 28-59 120-150 (157)
7 d1whza_ d.50.3.2 (A:) Hypothet 21.9 27 0.002 19.5 2.3 26 38-66 9-34 (70)
8 d1sdoa_ c.52.1.21 (A:) Restric 19.9 23 0.0017 24.2 1.9 19 35-53 59-77 (203)
9 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 18.1 42 0.003 19.0 2.5 24 30-53 19-45 (80)
10 d1s3za_ d.108.1.1 (A:) Aminogl 17.2 70 0.0051 18.1 3.6 27 27-53 112-138 (147)
No 1
>d2b5ga1 d.108.1.1 (A:3-169) Diamine acetyltransferase 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.79 E-value=2.2 Score=25.92 Aligned_cols=35 Identities=17% Similarity=0.415 Sum_probs=27.2
Q ss_pred CceEEEecCCchHHHHHHHhcCCEEccCCCCCceEE
Q psy9336 27 NKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFY 62 (99)
Q Consensus 27 ~~i~f~~~~~~tvv~~vl~~rGW~ev~~~~~dWnl~ 62 (99)
..|.-.|.-.|.--+...++.||+.+. +.++|.+|
T Consensus 121 ~~i~l~v~~~N~~A~~fY~k~GF~~~~-~~~~~~~~ 155 (167)
T d2b5ga1 121 SSMHFLVAEWNEPSINFYKRRGASDLS-SEEGWRLF 155 (167)
T ss_dssp SEEEEEEETTCHHHHHHHHTTTCEEHH-HHHTEEEE
T ss_pred ceeeeecccCcHHHHHHHHHCCCEECc-EecceEEE
Confidence 456666777787557999999999998 66678775
No 2
>d2beia1 d.108.1.1 (A:3-169) Diamine acetyltransferase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.58 E-value=4.4 Score=24.12 Aligned_cols=35 Identities=9% Similarity=0.233 Sum_probs=26.5
Q ss_pred CceEEEecCCchHHHHHHHhcCCEEccCCCCCceEE
Q psy9336 27 NKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFY 62 (99)
Q Consensus 27 ~~i~f~~~~~~tvv~~vl~~rGW~ev~~~~~dWnl~ 62 (99)
..|.--|.-.|.--+...++.||+++. +.++|.+|
T Consensus 121 ~~i~l~v~~~N~~A~~~Y~k~GF~~~~-~~~~y~~~ 155 (167)
T d2beia1 121 SQFRLAVLDWNQRAMDLYKALGAQDLT-EAEGWHFF 155 (167)
T ss_dssp CEEEEEEETTCHHHHHHHHHTTCEEHH-HHHCEEEE
T ss_pred cccceeeccCCHHHHHHHHHCCCEEcc-EecCcEEE
Confidence 356666677776556999999999998 66678766
No 3
>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]}
Probab=46.59 E-value=2.3 Score=26.43 Aligned_cols=16 Identities=31% Similarity=0.438 Sum_probs=13.4
Q ss_pred CCCCCeecCCCCcccc
Q psy9336 81 MNDNQIINHFPNHYEL 96 (99)
Q Consensus 81 L~~~QrVNHFPn~yEL 96 (99)
-..|..+||||+|++.
T Consensus 114 ~G~y~f~Ct~pgH~~~ 129 (139)
T d1qhqa_ 114 PGTYLYICTFPGHYLA 129 (139)
T ss_dssp SEEEEEECCSTTTTTT
T ss_pred CeEEEEEcCCcCcccc
Confidence 4578999999999974
No 4
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=36.53 E-value=10 Score=23.36 Aligned_cols=48 Identities=10% Similarity=-0.018 Sum_probs=27.8
Q ss_pred chHHHHHHHhcCCEEccCCCCCceEEecccccccccccccccCCCCCCCeecCCCCccc
Q psy9336 37 KSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQIINHFPNHYE 95 (99)
Q Consensus 37 ~tvv~~vl~~rGW~ev~~~~~dWnl~W~d~~~~~~~f~~~~~~~L~~~QrVNHFPn~yE 95 (99)
+.|+..+|++.|..+ .++|.++=.|.+..+.++|. +--.|+|=|+--|
T Consensus 22 ~ai~~~~LkK~~l~d----~~~~~v~v~d~~~~r~L~D~-------ELvtIC~~~~R~E 69 (95)
T d1k8rb_ 22 QKTLAIALKKFSLED----ASKFIVCVSQSSRIKLITEE-------EFKQICFNSSSPE 69 (95)
T ss_dssp HHHHHHHHHHHTCCC----TTSEEEEEECSSSEEECCCC--------------------
T ss_pred HHHHHHHHHhcCCCC----cceEEEEEcCCccEEEechH-------HHHHHHhCCCccc
Confidence 358899999999953 33899999988777777764 3345666665444
No 5
>d1jg5a_ d.205.1.1 (A:) GTP cyclohydrolase I feedback regulatory protein, GFRP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=29.81 E-value=17 Score=21.85 Aligned_cols=35 Identities=14% Similarity=0.348 Sum_probs=24.2
Q ss_pred EEEecCCchHHHHHHHhcCCEEccCCCCCceEEec
Q psy9336 30 YYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWA 64 (99)
Q Consensus 30 ~f~~~~~~tvv~~vl~~rGW~ev~~~~~dWnl~W~ 64 (99)
-|.++...-+|.+-|+.+||+.+.-...-=-+.||
T Consensus 45 ey~v~d~Pr~VLnKLE~~GyrVv~mtGvgqt~VW~ 79 (83)
T d1jg5a_ 45 EYYVNDPPRIVLDKLECRGFRVLSMTGVGQTLVWC 79 (83)
T ss_dssp EEEESSCHHHHHHHHHHTTCEEEEEEEETTEEEEE
T ss_pred EEEcCCChHHHHHHHhhcCeEEEEEecCCceEEEE
Confidence 57777777777899999999987532333344443
No 6
>d1wwza1 d.108.1.1 (A:1-157) Hypothetical protein PH1933 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=24.12 E-value=30 Score=19.87 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=21.6
Q ss_pred ceEEEecCCchHHHHHHHhcCCEEccCCCCCc
Q psy9336 28 KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDW 59 (99)
Q Consensus 28 ~i~f~~~~~~tvv~~vl~~rGW~ev~~~~~dW 59 (99)
++...+...|...+...++.||+++. +.+.|
T Consensus 120 ~~~~~v~~~N~~a~~~Y~k~GF~~~g-~~~~~ 150 (157)
T d1wwza1 120 TIELWVGEKNYGAMNLYEKFGFKKVG-KSGIW 150 (157)
T ss_dssp EEEEEEETTCHHHHHHHHHTTCEEEE-EETTE
T ss_pred ceEEEEcCCCHHHHHHHHHCCCEEEe-EEccE
Confidence 44445666776556899999999997 44444
No 7
>d1whza_ d.50.3.2 (A:) Hypothetical protein TTHA1913 {Thermus thermophilus [TaxId: 274]}
Probab=21.91 E-value=27 Score=19.45 Aligned_cols=26 Identities=8% Similarity=0.213 Sum_probs=19.2
Q ss_pred hHHHHHHHhcCCEEccCCCCCceEEeccc
Q psy9336 38 SVLINNFEKRGWIHVNSVEDDWNFYWAGI 66 (99)
Q Consensus 38 tvv~~vl~~rGW~ev~~~~~dWnl~W~d~ 66 (99)
.+ +.+|++.||..+. ...+ +..|...
T Consensus 9 el-ik~L~~~Gf~~~r-qkGS-H~~~~~~ 34 (70)
T d1whza_ 9 EV-ARKLRRLGFVERM-AKGG-HRLYTHP 34 (70)
T ss_dssp HH-HHHHHHTTCEEEE-EETT-EEEEECT
T ss_pred HH-HHHHHHCCcEEec-cCCc-eeEEEcC
Confidence 35 5899999999887 4444 7888754
No 8
>d1sdoa_ c.52.1.21 (A:) Restriction endonuclease BstyI {Geobacillus stearothermophilus [TaxId: 1422]}
Probab=19.93 E-value=23 Score=24.17 Aligned_cols=19 Identities=16% Similarity=0.419 Sum_probs=15.2
Q ss_pred CCchHHHHHHHhcCCEEcc
Q psy9336 35 LDKSVLINNFEKRGWIHVN 53 (99)
Q Consensus 35 ~~~tvv~~vl~~rGW~ev~ 53 (99)
-.|..+.+.|.++||++..
T Consensus 59 ~iN~~lk~~l~~~GW~e~~ 77 (203)
T d1sdoa_ 59 ALNEAFKEKLEAKGWKESR 77 (203)
T ss_dssp HHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHCCCcccc
Confidence 3467789999999998743
No 9
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=18.10 E-value=42 Score=19.02 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=16.3
Q ss_pred EEEecCCch---HHHHHHHhcCCEEcc
Q psy9336 30 YYCTDLDKS---VLINNFEKRGWIHVN 53 (99)
Q Consensus 30 ~f~~~~~~t---vv~~vl~~rGW~ev~ 53 (99)
+.||.|+.. +|...|++.+|..-.
T Consensus 19 R~Rt~ft~~Q~~~L~~~fe~~~~~~~~ 45 (80)
T d1wh7a_ 19 RFRTKFTAEQKEKMLAFAERLGWRIQK 45 (80)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSCCCS
T ss_pred CccccCCHHHHHHHHHHHHHhcccccC
Confidence 577888764 455666888885443
No 10
>d1s3za_ d.108.1.1 (A:) Aminoglycoside N-acetyltransferase AAC(6')-IY {Salmonella enteritidis [TaxId: 149539]}
Probab=17.21 E-value=70 Score=18.09 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=20.7
Q ss_pred CceEEEecCCchHHHHHHHhcCCEEcc
Q psy9336 27 NKIYYCTDLDKSVLINNFEKRGWIHVN 53 (99)
Q Consensus 27 ~~i~f~~~~~~tvv~~vl~~rGW~ev~ 53 (99)
..|.-.+...|..-....++.||+++.
T Consensus 112 ~~i~l~~~~~N~~a~~fY~k~GF~~~~ 138 (147)
T d1s3za_ 112 REMASDTSPENTISQKVHQALGFEETE 138 (147)
T ss_dssp SEEEEEECTTCHHHHHHHHHTTCEEEE
T ss_pred cceEEEEcCCCHHHHHHHHHCCCEEEC
Confidence 456766777776556899999998886
Done!