RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9336
         (99 letters)



>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB:
          3tii_A* 3tin_A*
          Length = 380

 Score = 55.4 bits (133), Expect = 1e-10
 Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 3/54 (5%)

Query: 45 EKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQIINHFPNHYELTN 98
              W  +      +N           +    LG+     Q++N++    +L  
Sbjct: 26 ASGQWKRLKRDNPKFNLMLG---ERNRLPFGRLGHEPGLVQLVNYYRGADKLCR 76


>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli,
           hydrolase; 1.90A {Escherichia coli}
          Length = 303

 Score = 24.9 bits (55), Expect = 5.7
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 17/57 (29%)

Query: 4   ASTKYPYQANGSGQQNVSPSD-------RQNKIYYCTDLDKSVLINN-----FEKRG 48
           AST        S  Q VS  D        Q KIYY T    +   ++       K+G
Sbjct: 175 ASTH-----TDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKG 226


>3hid_A Adenylosuccinate synthetase; niaid structural genomics, virulence
           associated factor, PURA, purine ribonucleotide
           biosynthesis, cytoplasm; 1.60A {Yersinia pestis CO92}
           PDB: 1kjx_A* 1kkb_A* 1kkf_A* 1ade_A 1adi_A 1cg0_A*
           1ch8_A* 1cib_A* 1gim_A* 1gin_A* 1hon_A* 1hoo_A* 1hop_A*
           1juy_A* 1ksz_A* 1nht_A* 1qf4_A* 1qf5_A* 1son_A* 1soo_A*
           ...
          Length = 432

 Score = 24.3 bits (54), Expect = 8.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 78  GYRMNDNQIINHFP 91
           GYRM D + ++  P
Sbjct: 347 GYRMPDGREVDTTP 360


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 24.4 bits (52), Expect = 8.7
 Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 12/76 (15%)

Query: 20  VSPSDRQNKIYYCTDLDKSVLINNFEKRGWIHVNSV-EDDWNFYWAGIQT-CRN------ 71
           +   D  +            L++  E+     V  V   ++ F  + I+T  R       
Sbjct: 55  IMSKDAVSGTLRLFWT----LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 72  IFSLELGYRMNDNQII 87
           ++  +     NDNQ+ 
Sbjct: 111 MYIEQRDRLYNDNQVF 126


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.134    0.428 

Gapped
Lambda     K      H
   0.267   0.0562    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,496,598
Number of extensions: 71761
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 16
Length of query: 99
Length of database: 6,701,793
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,886,928
Effective search space: 166155552
Effective search space used: 166155552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)