RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9336
         (99 letters)



>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia
          coli [TaxId: 562]}
          Length = 87

 Score = 24.4 bits (53), Expect = 1.7
 Identities = 4/37 (10%), Positives = 10/37 (27%)

Query: 48 GWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDN 84
           +I    +    +      +        E  Y++ D 
Sbjct: 30 AFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDV 66


>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 93

 Score = 24.3 bits (52), Expect = 2.1
 Identities = 9/49 (18%), Positives = 16/49 (32%)

Query: 8  YPYQANGSGQQNVSPSDRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVE 56
          YP++A    + + +  D              +  +     GW   N VE
Sbjct: 12 YPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60


>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 71

 Score = 23.7 bits (51), Expect = 2.2
 Identities = 9/54 (16%), Positives = 15/54 (27%)

Query: 3  QASTKYPYQANGSGQQNVSPSDRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVE 56
          +   KY +             D    +    D +     N   + G I  N V+
Sbjct: 8  ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQ 61


>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 58

 Score = 23.2 bits (50), Expect = 3.5
 Identities = 9/54 (16%), Positives = 14/54 (25%)

Query: 3  QASTKYPYQANGSGQQNVSPSDRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVE 56
          +A   Y +    SG       D    +      +         + G    N VE
Sbjct: 3  KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 56


>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon
          Methanococcus jannaschii [TaxId: 2190]}
          Length = 151

 Score = 23.6 bits (50), Expect = 4.6
 Identities = 4/26 (15%), Positives = 13/26 (50%)

Query: 38 SVLINNFEKRGWIHVNSVEDDWNFYW 63
          S+ +   E+ G++    ++ +   Y+
Sbjct: 59 SMSLKKLEELGFVRKVWIKGERKNYY 84


>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces
           clavuligerus [TaxId: 1901]}
          Length = 206

 Score = 22.8 bits (48), Expect = 9.6
 Identities = 3/33 (9%), Positives = 9/33 (27%)

Query: 31  YCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYW 63
              + D  +++   E+        V   +    
Sbjct: 90  PAPEGDAELVLRLLERYDLHAFRLVNGRFATVV 122


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.428 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 393,344
Number of extensions: 16064
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 11
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)