Query psy9337
Match_columns 156
No_of_seqs 141 out of 828
Neff 5.9
Searched_HMMs 46136
Date Sat Aug 17 00:43:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2156|consensus 100.0 2.1E-32 4.6E-37 243.2 6.5 144 5-155 171-400 (662)
2 PF03133 TTL: Tubulin-tyrosine 99.9 2E-25 4.4E-30 185.5 5.0 58 99-156 109-166 (292)
3 KOG2157|consensus 99.9 5.5E-25 1.2E-29 196.7 7.3 126 25-156 72-307 (497)
4 KOG2158|consensus 99.8 4.4E-21 9.5E-26 169.4 -2.0 57 99-155 265-323 (565)
5 KOG2155|consensus 99.7 9.5E-19 2.1E-23 154.3 3.7 120 26-154 303-507 (631)
6 PF06399 GFRP: GTP cyclohydrol 66.3 5 0.00011 28.3 2.1 36 30-65 45-80 (83)
7 PF00919 UPF0004: Uncharacteri 49.9 16 0.00034 26.1 2.5 27 38-65 17-43 (98)
8 PF11193 DUF2812: Protein of u 42.9 65 0.0014 22.9 4.8 55 18-74 28-91 (115)
9 PF08814 XisH: XisH protein; 33.8 32 0.00069 26.4 2.0 27 38-67 9-35 (135)
10 KOG3490|consensus 24.6 36 0.00078 25.3 0.8 17 82-98 66-83 (111)
11 PF13973 DUF4222: Domain of un 24.4 64 0.0014 20.6 1.9 27 113-139 16-42 (53)
12 PRK14329 (dimethylallyl)adenos 23.5 87 0.0019 28.2 3.3 28 38-66 41-68 (467)
13 PF02041 Auxin_BP: Auxin bindi 21.7 1E+02 0.0022 24.5 2.9 28 107-135 117-144 (167)
14 PRK14332 (dimethylallyl)adenos 20.5 92 0.002 27.9 2.8 28 38-66 28-55 (449)
No 1
>KOG2156|consensus
Probab=99.97 E-value=2.1e-32 Score=243.22 Aligned_cols=144 Identities=28% Similarity=0.433 Sum_probs=124.9
Q ss_pred CcccccccCCCccccccC--CCCCcceEEE-eCCChhHHHHHhhcCCcEEecCCCCCeEEEeccccccccccchhccccC
Q psy9337 5 STKYPYQANGSGQQNVSL--SDRQNKIYYC-TDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRM 81 (156)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~~~ir~~-t~~~~~vV~~~l~~~Gw~~v~~~~~dWnv~W~~~~~~~~~f~~~~~~~l 81 (156)
+.--||-.-+|-...|.. |+..+.++|+ |+....+|+++|.+.||++++ ..++|..+|+...... ..+.+
T Consensus 171 p~VpP~i~f~s~~~k~~k~p~~~~~vl~w~~t~~~p~vv~~vl~~sgfkivk-~n~dw~g~Wg~h~ksp------~fr~i 243 (662)
T KOG2156|consen 171 PRVPPTILFDSSADKVPKPPPPLHAVLKWKPTEVMPKVVRQVLANSGFKIVK-VNDDWMGVWGHHLKSP------SFRAI 243 (662)
T ss_pred CCCCCeeeeccccccCCCCChhHHHHhccCCcchhHHHHHHHHHhcccEEec-ccchHHHHhhhhcCCc------hhhhh
Confidence 334566555666666773 3344568888 678888999999999999999 8899999999976421 34578
Q ss_pred CccchhccCCeeeeecC---------------------------------------------------------------
Q psy9337 82 NDNQIINHFPNHYELTN--------------------------------------------------------------- 98 (156)
Q Consensus 82 ~~~QkVNHFP~~~~ltr--------------------------------------------------------------- 98 (156)
++||+||||||++.|+|
T Consensus 244 r~HQkvNH~PGsF~IGRKD~lW~~~~~~~~rf~~kef~fmPrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv 323 (662)
T KOG2156|consen 244 RSHQKVNHFPGSFRIGRKDRLWRNILRNQVRFGKKEFGFMPRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRV 323 (662)
T ss_pred hhhhhhccCCCccccccchHHHHHHHHHHHHhcccccCccceeeeccccHHHHHHHHhhCccccEEecCcccccCcceEe
Confidence 99999999999999998
Q ss_pred --------------------cCeeeeccccceeEEEEEccccccEEEEecCcEEeeccCCCCCCCCCccCceeeecc
Q psy9337 99 --------------------TPTARRGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELAARRRITTG 155 (156)
Q Consensus 99 --------------------~plLi~g~KFDlR~yvlvts~~Pl~~y~~~~g~~Rf~~~~y~~~~~~~~~~~~HlTn 155 (156)
+|+||+|-|||+|+||+|||++|||||+|.+|++|||+++|++...++.|+||||||
T Consensus 324 ~~kw~q~pk~rpLvvQ~yieRP~ling~KFDlrlYv~vts~nPLRIy~y~dgL~RFasvkYsp~~a~~~dKymhltn 400 (662)
T KOG2156|consen 324 INKWSQFPKDRPLVVQKYIERPLLINGSKFDLRLYVVVTSVNPLRIYIYNDGLVRFASVKYSPFDANNVDKYMHLTN 400 (662)
T ss_pred ccchhhCCCcccHHHHHHhhcceeecCcceeEEEEEEEeecCceEEEEeccceeeeccccCCcccccccceeEEecc
Confidence 999999999999999999999999999999999999999999988899999999998
No 2
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=99.91 E-value=2e-25 Score=185.50 Aligned_cols=58 Identities=45% Similarity=0.805 Sum_probs=27.9
Q ss_pred cCeeeeccccceeEEEEEccccccEEEEecCcEEeeccCCCCCCCCCccCceeeeccC
Q psy9337 99 TPTARRGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELAARRRITTGA 156 (156)
Q Consensus 99 ~plLi~g~KFDlR~yvlvts~~Pl~~y~~~~g~~Rf~~~~y~~~~~~~~~~~~HlTn~ 156 (156)
|||||+|+|||||+||||+|.+||+||+|++|++|||+++|+....++.+.++||||.
T Consensus 109 ~PlLi~grKFDlR~yvlvts~~pl~vy~y~~g~vR~~~~~Y~~~~~~~~~~~~HlTN~ 166 (292)
T PF03133_consen 109 NPLLIDGRKFDLRVYVLVTSLNPLRVYLYKEGYVRFASEPYDPDLDDLSDRFAHLTNY 166 (292)
T ss_dssp SB--BTTB-EEEEEEEEE-T--T--EEEES--EEEE-SS-------------------
T ss_pred CCeEEeeeeEEEEEEEEEeeccceeeeeccCceEEeccceeecccccccccccccccc
Confidence 9999999999999999999999999999999999999999995445899999999994
No 3
>KOG2157|consensus
Probab=99.91 E-value=5.5e-25 Score=196.73 Aligned_cols=126 Identities=38% Similarity=0.675 Sum_probs=108.0
Q ss_pred CCcceEEEeCCChhH-HHHHhhcCCcEEecCCCCCeEEEeccccccccccchhccccCCcc-chhccCCeeeeecC----
Q psy9337 25 RQNKIYYCTDLDKSV-LINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDN-QIINHFPNHYELTN---- 98 (156)
Q Consensus 25 ~~~~ir~~t~~~~~v-V~~~l~~~Gw~~v~~~~~dWnv~W~~~~~~~~~f~~~~~~~l~~~-QkVNHFP~~~~ltr---- 98 (156)
.+.+|.|+|+...+. |.+.+.+.||..+..+.++|+|+|+..+.+...+ ..+.++ |++||||++.+|+|
T Consensus 72 ~k~~i~y~~~~~~~~~i~~~~~~~G~l~~~~~~~~~~f~w~~~~~~~~~~-----~~~~p~~~~~~~~p~~~~L~rkd~l 146 (497)
T KOG2157|consen 72 GKHKIKYRTQEKEPKLLNNFLNREGWLQFTESAEDWNFYWRGYEGIDFDF-----SWLAPYNQVVNHFPRRKELTRKDLL 146 (497)
T ss_pred CCCceEEEecccchHHHHHHHhhcceeeecccccceEEEEeccccccHHH-----hhhcchhhhhhccccHHHhhhhHHh
Confidence 445799999866555 5555566699998877889999999976544332 246676 99999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy9337 99 -------------------------------------------------------------------------------- 98 (156)
Q Consensus 99 -------------------------------------------------------------------------------- 98 (156)
T Consensus 147 ~~~i~r~~~~~e~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~v~e~~~~~~~~~wIvKP~~~srg~GI~~~~~l~~l~~ 226 (497)
T KOG2157|consen 147 MKLIKRYLALLERSRLPKAQLEDYILLDYVETTFVLLDEYKKLVEEYEEDSERSWWIVKPASKSRGRGIFLFNTLSDLQA 226 (497)
T ss_pred hhhHHHHHHhccccccchhhcccceeecccchhhhhhhHHHHHHHHHHhccccceEEeccccccccceeEEecchhhhhh
Confidence
Q ss_pred ------------------------cCeeeeccccceeEEEEEccccccEEEEecCcEEeeccCCCCCCCCCccCceeeec
Q psy9337 99 ------------------------TPTARRGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELAARRRITT 154 (156)
Q Consensus 99 ------------------------~plLi~g~KFDlR~yvlvts~~Pl~~y~~~~g~~Rf~~~~y~~~~~~~~~~~~HlT 154 (156)
+||||+|+|||||+||+|++++||.+|+|++|++|||+++|++ ..|+.|.++|||
T Consensus 227 ~~~~~~~~~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~~~pl~~y~yreg~lRf~t~~y~~-~~nl~n~~~HLt 305 (497)
T KOG2157|consen 227 IVDSFDSFISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTHFDPLLLYRYREGFLRFSTEPYGP-LVNLQNMSVHLT 305 (497)
T ss_pred hhhcccccccccccccceeeeeccCccccCCceeeeeEEEEeecccchhheeeccceEEEEeccCcc-hhhhcccchhhh
Confidence 9999999999999999999999999999999999999999997 679999999999
Q ss_pred cC
Q psy9337 155 GA 156 (156)
Q Consensus 155 n~ 156 (156)
|.
T Consensus 306 N~ 307 (497)
T KOG2157|consen 306 NV 307 (497)
T ss_pred cc
Confidence 94
No 4
>KOG2158|consensus
Probab=99.79 E-value=4.4e-21 Score=169.36 Aligned_cols=57 Identities=32% Similarity=0.461 Sum_probs=55.3
Q ss_pred cCeee-eccccceeEEEEEccccccEEEEecCcEEeeccCCCCCCC-CCccCceeeecc
Q psy9337 99 TPTAR-RGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNI-TELAARRRITTG 155 (156)
Q Consensus 99 ~plLi-~g~KFDlR~yvlvts~~Pl~~y~~~~g~~Rf~~~~y~~~~-~~~~~~~~HlTn 155 (156)
.|||| |+.|||+|+|.+++|++||+||++++|++||||++|..++ .|+.+.||||||
T Consensus 265 ~pLli~dkyKfd~rvy~likSvdPlsIfva~eGlaRFcTeky~ePts~n~~~lymhlTn 323 (565)
T KOG2158|consen 265 YPLLISDKYKFDQRVYSLIKSVDPLSIFVASEGLARFCTEKYIEPTSANRSHLYMHLTN 323 (565)
T ss_pred ccccccccceeeeeeeeeeeccCcceEEEeccchhhhhhccccCCCcccHHHHHHHHHH
Confidence 99999 9999999999999999999999999999999999999876 699999999998
No 5
>KOG2155|consensus
Probab=99.74 E-value=9.5e-19 Score=154.35 Aligned_cols=120 Identities=24% Similarity=0.299 Sum_probs=109.8
Q ss_pred CcceEEEeCCChhHHHHHhhcCCcEEecCCCCCeEEEeccccccccccchhccccCCccchhccCCeeeeecC-------
Q psy9337 26 QNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQIINHFPNHYELTN------- 98 (156)
Q Consensus 26 ~~~ir~~t~~~~~vV~~~l~~~Gw~~v~~~~~dWnv~W~~~~~~~~~f~~~~~~~l~~~QkVNHFP~~~~ltr------- 98 (156)
+++|+++||.. +|.+.|.+..|+.++ +..|.|++|..++. -|++++....|.|.||+||.+..||-
T Consensus 303 g~~~kVYtD~~--Qv~e~Lt~p~f~~t~-~~kdADilw~~~hf----~Dykkls~e~p~~~iNQFPfE~cltvKd~LA~~ 375 (631)
T KOG2155|consen 303 GRKIKVYTDDT--QVTEHLTNPKFEYTD-DIKDADILWMIKHF----HDYKKLSEENPCGMINQFPFESCLTVKDLLAAC 375 (631)
T ss_pred CceeEEEcCcH--HHHHhccCCceEecc-CccccceeeehhhH----HHHHHHhccCCcceeccCchHHHHHHHHHHHHH
Confidence 45799999988 899999999999999 89999999999873 23456678899999999999988874
Q ss_pred ------------------------------------------------------------------------------cC
Q psy9337 99 ------------------------------------------------------------------------------TP 100 (156)
Q Consensus 99 ------------------------------------------------------------------------------~p 100 (156)
+|
T Consensus 376 a~r~~g~~~Wlq~TyNL~TqLpqFv~~fq~Rer~g~~N~WI~KPWNlAR~~Dt~vT~~L~~IIRm~EtgPKiv~kYIe~P 455 (631)
T KOG2155|consen 376 AMRDPGKNDWLQLTYNLNTQLPQFVARFQNRERNGQHNVWIVKPWNLARGMDTTVTEDLNQIIRMIETGPKIVCKYIERP 455 (631)
T ss_pred HhhcCCCCcccccccccccchHHHHHHHHHHHhcCcCceEEechhhhhhcccchhhhhHHHHHHHHhcCchHHHHhcCCc
Confidence 99
Q ss_pred eeeeccccceeEEEEEccccccEEEEecCcEEeeccCCCCCCCCCccCceeeec
Q psy9337 101 TARRGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELAARRRITT 154 (156)
Q Consensus 101 lLi~g~KFDlR~yvlvts~~Pl~~y~~~~g~~Rf~~~~y~~~~~~~~~~~~HlT 154 (156)
+|..|-|||||.-|++.|++||++|||+..++||++.+|.++ |+.++..|+|
T Consensus 456 ~LFr~gKFDlRYiVllrsi~Pl~~yvy~~FWiRfsnn~fsL~--~f~dyEtHFT 507 (631)
T KOG2155|consen 456 LLFRNGKFDLRYIVLLRSIAPLTAYVYNRFWIRFSNNEFSLS--NFEDYETHFT 507 (631)
T ss_pred ceeecCccceEEEEEEccccchhhhheeheeeeecCCccchh--hhhhhhhhhh
Confidence 999888999999999999999999999999999999999988 9999999998
No 6
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=66.33 E-value=5 Score=28.33 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=28.2
Q ss_pred EEEeCCChhHHHHHhhcCCcEEecCCCCCeEEEecc
Q psy9337 30 YYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAG 65 (156)
Q Consensus 30 r~~t~~~~~vV~~~l~~~Gw~~v~~~~~dWnv~W~~ 65 (156)
-|+++..+.+|-+-|+..||+.+.-..-.+.+.|+=
T Consensus 45 ey~~~~~Pr~VLnKLE~~G~kVvsmtgvgqt~vWtL 80 (83)
T PF06399_consen 45 EYHVDDPPRVVLNKLEKMGYKVVSMTGVGQTLVWTL 80 (83)
T ss_dssp EEEESS-HHHHHHHHHHTTEEEEEEEEETTEEEEEE
T ss_pred EEEcCCChHHHHHHHHhcCeEEEEEeccCceEEEEE
Confidence 488888888999999999999986434456888874
No 7
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=49.92 E-value=16 Score=26.06 Aligned_cols=27 Identities=7% Similarity=0.128 Sum_probs=22.2
Q ss_pred hHHHHHhhcCCcEEecCCCCCeEEEecc
Q psy9337 38 SVLINNFEKRGWIHVNSVEDDWNFYWAG 65 (156)
Q Consensus 38 ~vV~~~l~~~Gw~~v~~~~~dWnv~W~~ 65 (156)
..+...|.+.||++++ +.++.|++=..
T Consensus 17 e~i~~~l~~~G~~~~~-~~e~AD~iiiN 43 (98)
T PF00919_consen 17 ERIASILQAAGYEIVD-DPEEADVIIIN 43 (98)
T ss_pred HHHHHHHHhcCCeeec-ccccCCEEEEE
Confidence 4788999999999999 77788887544
No 8
>PF11193 DUF2812: Protein of unknown function (DUF2812); InterPro: IPR021359 This is a bacterial family of uncharacterised proteins, however some members of this family are annotated as membrane proteins.
Probab=42.88 E-value=65 Score=22.87 Aligned_cols=55 Identities=18% Similarity=0.399 Sum_probs=36.6
Q ss_pred ccccCCCCCcceEEEeCCC----h---hHHHHHhhcCCcEEe-cCCCCCeEEEeccccccc-cccc
Q psy9337 18 QNVSLSDRQNKIYYCTDLD----K---SVLINNFEKRGWIHV-NSVEDDWNFYWAGIQTCR-NIFS 74 (156)
Q Consensus 18 ~~~~~~~~~~~ir~~t~~~----~---~vV~~~l~~~Gw~~v-~~~~~dWnv~W~~~~~~~-~~f~ 74 (156)
-.++... +..++|+.++. + .--.+.+++.||+.+ . ....|.++........ ++++
T Consensus 28 ~~F~k~e-p~~~~Y~vd~~~~~~~~~~~~y~~~~e~~GW~~v~~-~~~~~~if~~~~~~~~~~i~t 91 (115)
T PF11193_consen 28 YTFEKGE-PKDYRYRVDFNDPKSKEEQKEYLEFFEEAGWEYVYS-NFGGWQIFRKEEDDGPPEIYT 91 (115)
T ss_pred EEEEECC-CceEEEEEEEccccchhhhHHHHHHHHHCCCEEEec-cCcEEEEEEEcCCCCCCCCcC
Confidence 4455533 45677876644 1 224567899999999 7 6788999998876543 4443
No 9
>PF08814 XisH: XisH protein; InterPro: IPR014919 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 2OKF_A.
Probab=33.82 E-value=32 Score=26.44 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=18.8
Q ss_pred hHHHHHhhcCCcEEecCCCCCeEEEecccc
Q psy9337 38 SVLINNFEKRGWIHVNSVEDDWNFYWAGIQ 67 (156)
Q Consensus 38 ~vV~~~l~~~Gw~~v~~~~~dWnv~W~~~~ 67 (156)
.+|+.+|++-||.+++ | -..+-|.+..
T Consensus 9 ~~Vk~AL~kdgW~IT~-D--Pl~l~~~~~~ 35 (135)
T PF08814_consen 9 DAVKNALEKDGWTITH-D--PLRLKYGGVD 35 (135)
T ss_dssp HHHHHHHHHTT-EEEE-S--S---EETTEE
T ss_pred HHHHHHHHHcCCEEEC-C--CcEEEECcEE
Confidence 4789999999999998 3 3677788754
No 10
>KOG3490|consensus
Probab=24.57 E-value=36 Score=25.25 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=14.6
Q ss_pred CccchhccC-CeeeeecC
Q psy9337 82 NDNQIINHF-PNHYELTN 98 (156)
Q Consensus 82 ~~~QkVNHF-P~~~~ltr 98 (156)
..||+|.+| ||+|.|..
T Consensus 66 akWqri~~f~~G~YAi~V 83 (111)
T KOG3490|consen 66 AKWQRIGRFTPGMYAISV 83 (111)
T ss_pred HHHHhhccccCceEEEEe
Confidence 458999999 89998865
No 11
>PF13973 DUF4222: Domain of unknown function (DUF4222)
Probab=24.37 E-value=64 Score=20.63 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=23.1
Q ss_pred EEEEccccccEEEEecCcEEeeccCCC
Q psy9337 113 YVLVTSFRPLKCYLFKLGFCRFCTVKY 139 (156)
Q Consensus 113 yvlvts~~Pl~~y~~~~g~~Rf~~~~y 139 (156)
-|.|.|+++-++...++|+-+-|..+-
T Consensus 16 ~V~I~~~~~~rV~y~R~GY~~~c~~p~ 42 (53)
T PF13973_consen 16 PVTIISVDFNRVTYRRDGYEHPCVMPV 42 (53)
T ss_pred EEEEEEEECCEEEEEECCCCccccCCH
Confidence 478889999999999999999987753
No 12
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.53 E-value=87 Score=28.17 Aligned_cols=28 Identities=4% Similarity=0.141 Sum_probs=22.1
Q ss_pred hHHHHHhhcCCcEEecCCCCCeEEEeccc
Q psy9337 38 SVLINNFEKRGWIHVNSVEDDWNFYWAGI 66 (156)
Q Consensus 38 ~vV~~~l~~~Gw~~v~~~~~dWnv~W~~~ 66 (156)
..+...|.+.||+++. +.+++|++=..+
T Consensus 41 e~~~~~l~~~G~~~~~-~~~~ADiviiNT 68 (467)
T PRK14329 41 EIVASILQMAGYNTTE-NLEEADLVLVNT 68 (467)
T ss_pred HHHHHHHHHCcCEECC-CcccCCEEEEeC
Confidence 4788899999999998 667788775543
No 13
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=21.74 E-value=1e+02 Score=24.45 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=18.2
Q ss_pred ccceeEEEEEccccccEEEEecCcEEeec
Q psy9337 107 KFDLRLYVLVTSFRPLKCYLFKLGFCRFC 135 (156)
Q Consensus 107 KFDlR~yvlvts~~Pl~~y~~~~g~~Rf~ 135 (156)
.-||++.|+++ --|.++++|++-...-.
T Consensus 117 ~eDlqvlViiS-rpPvkvf~y~dw~~pht 144 (167)
T PF02041_consen 117 HEDLQVLVIIS-RPPVKVFIYDDWSMPHT 144 (167)
T ss_dssp SS-EEEEEEEE-SSS--EEEESSTTS-GG
T ss_pred CcceEEEEEec-CCCeEEEEeccccCcch
Confidence 57999988764 46999999998765443
No 14
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.54 E-value=92 Score=27.92 Aligned_cols=28 Identities=4% Similarity=0.124 Sum_probs=22.1
Q ss_pred hHHHHHhhcCCcEEecCCCCCeEEEeccc
Q psy9337 38 SVLINNFEKRGWIHVNSVEDDWNFYWAGI 66 (156)
Q Consensus 38 ~vV~~~l~~~Gw~~v~~~~~dWnv~W~~~ 66 (156)
..+...|.+.||.+++ +.+++|++=..+
T Consensus 28 e~~~~~l~~~G~~~~~-~~~~ADvviiNT 55 (449)
T PRK14332 28 GIVSSLMRDAEYSTSN-DPENSDIIFLNT 55 (449)
T ss_pred HHHHHHHHHCcCEECC-CcccCCEEEEEc
Confidence 3678889999999998 777788875543
Done!