Query psy9337
Match_columns 156
No_of_seqs 141 out of 828
Neff 5.9
Searched_HMMs 29240
Date Sat Aug 17 00:44:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9337.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9337hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tig_A TTL protein; ATP-grAsp, 100.0 2.3E-30 7.7E-35 224.2 6.5 113 35-155 15-245 (380)
2 1jg5_A GTP cyclohydrolase I fe 73.1 2.1 7.2E-05 29.2 2.3 36 30-65 45-80 (83)
3 2inb_A Hypothetical protein; Z 26.7 33 0.0011 25.5 2.1 27 38-67 10-36 (140)
4 1x4f_A Matrin 3; structural ge 23.6 1.1E+02 0.0037 21.1 4.3 45 4-48 2-51 (112)
5 1k2d_P MBP peptide, myelin bas 20.8 49 0.0017 17.3 1.4 20 3-22 5-24 (26)
6 4a4j_A Pacszia, cation-transpo 19.2 89 0.003 18.0 2.8 38 14-51 29-66 (69)
7 3n6x_A Putative glutathionylsp 17.8 92 0.0032 27.2 3.5 36 99-138 414-453 (474)
8 3vne_A Membrane-associated pro 14.4 23 0.0008 27.7 -1.1 57 34-98 8-65 (224)
9 1yg0_A COP associated protein; 13.4 62 0.0021 18.0 0.9 34 17-50 31-64 (66)
10 3dxs_X Copper-transporting ATP 12.8 62 0.0021 19.1 0.8 40 14-53 29-69 (74)
No 1
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=99.96 E-value=2.3e-30 Score=224.17 Aligned_cols=113 Identities=18% Similarity=0.260 Sum_probs=81.8
Q ss_pred CChhHHHHHhhcCC-cEEecCCCCCeEEEeccccccccccchhccccC-CccchhccCCeeeeecC--------------
Q psy9337 35 LDKSVLINNFEKRG-WIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRM-NDNQIINHFPNHYELTN-------------- 98 (156)
Q Consensus 35 ~~~~vV~~~l~~~G-w~~v~~~~~dWnv~W~~~~~~~~~f~~~~~~~l-~~~QkVNHFP~~~~ltr-------------- 98 (156)
....+|+++|+++| |+++.++..+|||+|++.... +..++.+. .++|+||||||+++|||
T Consensus 15 svy~~V~~vL~~~g~w~ev~~~~~~~dl~W~~~~~~----p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~~~ 90 (380)
T 3tig_A 15 TVYAEVAKILLASGQWKRLKRDNPKFNLMLGERNRL----PFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPEL 90 (380)
T ss_dssp HHHHHHHHHHHHTTSEEECCTTCSCCSEEECCSSSC----CGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHCHHH
T ss_pred cHHHHHHHHHHhcCCeEEeCCCCCceeEEEecCCCC----CHHHhccCCCcceEEeecCCcccccccHHHHHHHHHhhhc
Confidence 34468999999999 999986788999999997631 22233333 67899999999987776
Q ss_pred --------------------------------------------------------------------------------
Q psy9337 99 -------------------------------------------------------------------------------- 98 (156)
Q Consensus 99 -------------------------------------------------------------------------------- 98 (156)
T Consensus 91 ~~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~~srG~GI~l~~~~~ 170 (380)
T 3tig_A 91 TETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDAT 170 (380)
T ss_dssp HTTCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESCC----CCBCCSCSH
T ss_pred ccccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCccCCCCCEEEeCCHH
Confidence
Q ss_pred --------------------cCeee--eccccceeEEEEEccccccEEEEecCcEEeeccCCCCCCCCCccCceeeecc
Q psy9337 99 --------------------TPTAR--RGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELAARRRITTG 155 (156)
Q Consensus 99 --------------------~plLi--~g~KFDlR~yvlvts~~Pl~~y~~~~g~~Rf~~~~y~~~~~~~~~~~~HlTn 155 (156)
||||| +|+|||||+||||+| ||++|+|++|++|||+++|+++ +++|.++||||
T Consensus 171 ~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts--~l~vy~y~~g~~Rfa~~~y~~~--~~~~~~~HLTN 245 (380)
T 3tig_A 171 ELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSDT--NFQDMTSHLTN 245 (380)
T ss_dssp HHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT--TCCEEECSCCEEEECC-------------------
T ss_pred HHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEEEcC--CCEEEEEcCCEEEecCCCcCcc--chhhhhhhccc
Confidence 89999 999999999999999 9999999999999999999976 89999999999
No 2
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=73.06 E-value=2.1 Score=29.16 Aligned_cols=36 Identities=14% Similarity=0.298 Sum_probs=29.9
Q ss_pred EEEeCCChhHHHHHhhcCCcEEecCCCCCeEEEecc
Q psy9337 30 YYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAG 65 (156)
Q Consensus 30 r~~t~~~~~vV~~~l~~~Gw~~v~~~~~dWnv~W~~ 65 (156)
-|+++..+.+|-+-|+++||+.+.-..-.+.+.||-
T Consensus 45 ey~v~dpPr~VLnKLE~~G~rVvsmtGvgqtlVWcl 80 (83)
T 1jg5_A 45 EYYVNDPPRIVLDKLECRGFRVLSMTGVGQTLVWCL 80 (83)
T ss_dssp EEEESSCHHHHHHHHHHTTCEEEEEEEETTEEEEEE
T ss_pred EEEcCCChHHHHHHHhccCeEEEEEecCCceEEEEE
Confidence 478888888999999999999987445568899985
No 3
>2inb_A Hypothetical protein; ZP_00107633.1, structural genomics, PS protein structure initiative, joint center for structural G JCSG; HET: MSE GOL; 1.60A {Nostoc punctiforme} SCOP: c.52.1.32 PDB: 2okf_A*
Probab=26.69 E-value=33 Score=25.46 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=20.5
Q ss_pred hHHHHHhhcCCcEEecCCCCCeEEEecccc
Q psy9337 38 SVLINNFEKRGWIHVNSVEDDWNFYWAGIQ 67 (156)
Q Consensus 38 ~vV~~~l~~~Gw~~v~~~~~dWnv~W~~~~ 67 (156)
..|+.+|++-||.+++ |+ ..+-|.+..
T Consensus 10 ~~vk~aL~kdgW~It~-DP--~~l~~~~~~ 36 (140)
T 2inb_A 10 QVVKIALEKDGWQITN-DP--LTISVGGVN 36 (140)
T ss_dssp HHHHHHHHHTTCEEEE-SS--CCCEETTEE
T ss_pred HHHHHHHHhcCCEeeC-CC--cEEEECcEE
Confidence 5789999999999998 43 556666554
No 4
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.57 E-value=1.1e+02 Score=21.07 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=32.0
Q ss_pred cCcccccccCCCccccccCCCCCcceEEEeCC-----ChhHHHHHhhcCC
Q psy9337 4 ASTKYPYQANGSGQQNVSLSDRQNKIYYCTDL-----DKSVLINNFEKRG 48 (156)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~ir~~t~~-----~~~vV~~~l~~~G 48 (156)
.|...||+++|+.++++.-...+....|..++ ...-|+++|...|
T Consensus 2 ~~~~~~~~~~~~~~k~~~~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG 51 (112)
T 1x4f_A 2 SSGSSGKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYG 51 (112)
T ss_dssp CCSSSCCCSCCCCCCCCCCSSCCCCEEEEESCCCSSCCSHHHHTTTTTTS
T ss_pred CCCCCCccccCChhhhccccCCCCCEEEEeCCCCccCCHHHHHHHHHhcC
Confidence 35678999999999998887777766666533 3334677776665
No 5
>1k2d_P MBP peptide, myelin basic protein peptide with 8 residue linke; MHC class II, I-AU, H-2U, autoimmune disease; HET: NDG NAG; 2.20A {Mus musculus}
Probab=20.81 E-value=49 Score=17.34 Aligned_cols=20 Identities=35% Similarity=0.368 Sum_probs=15.1
Q ss_pred ccCcccccccCCCccccccC
Q psy9337 3 QASTKYPYQANGSGQQNVSL 22 (156)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (156)
-||.+-|.|--|+|+-+.|.
T Consensus 5 gasq~rpsqrhg~gsgsgs~ 24 (26)
T 1k2d_P 5 GASQYRPSQRHGTGSGSGSX 24 (26)
T ss_pred cccccCccccccCCCCcCcc
Confidence 47888999988887766553
No 6
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=19.16 E-value=89 Score=18.02 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=24.9
Q ss_pred CCccccccCCCCCcceEEEeCCChhHHHHHhhcCCcEE
Q psy9337 14 GSGQQNVSLSDRQNKIYYCTDLDKSVLINNFEKRGWIH 51 (156)
Q Consensus 14 ~~~~~~~~~~~~~~~ir~~t~~~~~vV~~~l~~~Gw~~ 51 (156)
|-.+.+|++......+.|........+.+++++.||..
T Consensus 29 gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~ 66 (69)
T 4a4j_A 29 GVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHA 66 (69)
T ss_dssp TEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHTTCEE
T ss_pred CeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHcCCce
Confidence 44456677776666667744455556778888888864
No 7
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=17.79 E-value=92 Score=27.21 Aligned_cols=36 Identities=28% Similarity=0.415 Sum_probs=28.4
Q ss_pred cCeeee----ccccceeEEEEEccccccEEEEecCcEEeeccCC
Q psy9337 99 TPTARR----GKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVK 138 (156)
Q Consensus 99 ~plLi~----g~KFDlR~yvlvts~~Pl~~y~~~~g~~Rf~~~~ 138 (156)
-|.+++ .+++|||.|++... ..++...||+|.+..+
T Consensus 414 ~P~~~~~~~~~r~~dlR~F~~~g~----~~~v~pGgltRva~~~ 453 (474)
T 3n6x_A 414 CPTLVETGIAPRHVDLRPFVLSGK----TVSLVPGALCRVALRE 453 (474)
T ss_dssp EEEEETTEEEEEEEEEECEEEESS----SEEECSCCEEEEECST
T ss_pred cceeeCCceeeeeEEEEEEEEcCC----ceEEecceEEEEecCC
Confidence 566654 47899999999852 3789999999999764
No 8
>3vne_A Membrane-associated protein VP24; interferon antagonist, STAT1, zaire, sudan VP35, karyopherin alpha, IFN response pathway, viral protei; 2.00A {Sudan ebolavirus} PDB: 3vnf_A 4d9o_A
Probab=14.41 E-value=23 Score=27.69 Aligned_cols=57 Identities=21% Similarity=0.620 Sum_probs=36.1
Q ss_pred CCChhHHHHHhhcCCcEEecCCCCCeEEEeccccccccccchh-ccccCCccchhccCCeeeeecC
Q psy9337 34 DLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLE-LGYRMNDNQIINHFPNHYELTN 98 (156)
Q Consensus 34 ~~~~~vV~~~l~~~Gw~~v~~~~~dWnv~W~~~~~~~~~f~~~-~~~~l~~~QkVNHFP~~~~ltr 98 (156)
+.++.+|..-+ +.|-... .-..|.++|+... |+.. .++.+-..-|.|-|--.+.+||
T Consensus 8 ~~e~~vvl~dl--c~flv~~-tv~GW~V~Wag~~-----F~v~~kGmaLL~rLKtndfaPaW~mTr 65 (224)
T 3vne_A 8 ELEQGVAFSDL--CNFLVTP-TVQGWKVYWAGLE-----FDVNQKGITLLNRLKVNDFAPAWAMTR 65 (224)
T ss_dssp HHHHHHHHHHH--HBCEEEE-CSSEEEEEETTEE-----EEEECTTHHHHHHHHSCCCCGGGHHHH
T ss_pred hhhhchhHHHH--Hhhhhcc-cccceEEEEeeeE-----EecCcchHHHHHHhhhcccchHHHHHh
Confidence 44444544333 3477776 6678999999964 4322 2333445567888888888888
No 9
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=13.41 E-value=62 Score=18.00 Aligned_cols=34 Identities=9% Similarity=0.112 Sum_probs=16.8
Q ss_pred cccccCCCCCcceEEEeCCChhHHHHHhhcCCcE
Q psy9337 17 QQNVSLSDRQNKIYYCTDLDKSVLINNFEKRGWI 50 (156)
Q Consensus 17 ~~~~~~~~~~~~ir~~t~~~~~vV~~~l~~~Gw~ 50 (156)
+..+++......+.|........+.+.+++.||.
T Consensus 31 ~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~ 64 (66)
T 1yg0_A 31 FIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQE 64 (66)
T ss_dssp EEEEETTTTEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred EEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 4445555443334443322334456667777764
No 10
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=12.78 E-value=62 Score=19.13 Aligned_cols=40 Identities=13% Similarity=0.234 Sum_probs=25.2
Q ss_pred CCccccccCCCCCcceEEEeC-CChhHHHHHhhcCCcEEec
Q psy9337 14 GSGQQNVSLSDRQNKIYYCTD-LDKSVLINNFEKRGWIHVN 53 (156)
Q Consensus 14 ~~~~~~~~~~~~~~~ir~~t~-~~~~vV~~~l~~~Gw~~v~ 53 (156)
|-...+|++......+.|... ....-+.+++++.||....
T Consensus 29 gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 69 (74)
T 3dxs_X 29 GVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAEI 69 (74)
T ss_dssp TEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEEE
T ss_pred CEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceEE
Confidence 334556666665555666543 3445678889999997654
Done!