Query psy9337
Match_columns 156
No_of_seqs 141 out of 828
Neff 5.9
Searched_HMMs 13730
Date Sat Aug 17 00:44:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9337.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9337hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jg5a_ d.205.1.1 (A:) GTP cyc 33.5 12 0.00089 23.7 2.3 36 30-65 45-80 (83)
2 d2b5ga1 d.108.1.1 (A:3-169) Di 31.9 10 0.00074 24.7 1.9 34 28-62 122-155 (167)
3 d2okfa1 c.52.1.32 (A:4-139) Fd 26.4 16 0.0012 25.3 2.1 27 38-67 6-32 (136)
4 d1kvja_ d.58.17.1 (A:) Menkes 25.1 33 0.0024 20.3 3.4 41 13-53 34-75 (79)
5 d2beia1 d.108.1.1 (A:3-169) Di 24.4 15 0.0011 23.4 1.7 34 28-62 122-155 (167)
6 d2qifa1 d.58.17.1 (A:1-69) Cop 24.2 25 0.0018 20.3 2.6 40 13-52 28-68 (69)
7 d1p6ta1 d.58.17.1 (A:1-72) Pot 22.5 16 0.0012 21.4 1.4 40 13-52 32-72 (72)
8 d1jjcb2 a.6.1.1 (B:400-474) Do 19.9 50 0.0036 19.6 3.4 28 34-62 19-46 (75)
9 d3bula2 c.23.6.1 (A:741-896) M 18.2 45 0.0033 22.6 3.2 30 24-53 4-39 (156)
10 d2ggpb1 d.58.17.1 (B:1-72) Cop 17.5 40 0.0029 19.5 2.5 37 14-50 29-65 (72)
No 1
>d1jg5a_ d.205.1.1 (A:) GTP cyclohydrolase I feedback regulatory protein, GFRP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=33.47 E-value=12 Score=23.68 Aligned_cols=36 Identities=14% Similarity=0.298 Sum_probs=26.7
Q ss_pred EEEeCCChhHHHHHhhcCCcEEecCCCCCeEEEecc
Q psy9337 30 YYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAG 65 (156)
Q Consensus 30 r~~t~~~~~vV~~~l~~~Gw~~v~~~~~dWnv~W~~ 65 (156)
-|+++..+.+|-+-|+..||+.+.-....=.+.||-
T Consensus 45 ey~v~d~Pr~VLnKLE~~GyrVv~mtGvgqt~VW~l 80 (83)
T d1jg5a_ 45 EYYVNDPPRIVLDKLECRGFRVLSMTGVGQTLVWCL 80 (83)
T ss_dssp EEEESSCHHHHHHHHHHTTCEEEEEEEETTEEEEEE
T ss_pred EEEcCCChHHHHHHHhhcCeEEEEEecCCceEEEEE
Confidence 478888888999999999999986323334566653
No 2
>d2b5ga1 d.108.1.1 (A:3-169) Diamine acetyltransferase 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.86 E-value=10 Score=24.70 Aligned_cols=34 Identities=18% Similarity=0.418 Sum_probs=25.7
Q ss_pred ceEEEeCCChhHHHHHhhcCCcEEecCCCCCeEEE
Q psy9337 28 KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFY 62 (156)
Q Consensus 28 ~ir~~t~~~~~vV~~~l~~~Gw~~v~~~~~dWnv~ 62 (156)
.|...+...|.--+...++.||+.+. +.++|.++
T Consensus 122 ~i~l~v~~~N~~A~~fY~k~GF~~~~-~~~~~~~~ 155 (167)
T d2b5ga1 122 SMHFLVAEWNEPSINFYKRRGASDLS-SEEGWRLF 155 (167)
T ss_dssp EEEEEEETTCHHHHHHHHTTTCEEHH-HHHTEEEE
T ss_pred eeeeecccCcHHHHHHHHHCCCEECc-EecceEEE
Confidence 45555666666667888999999998 66778775
No 3
>d2okfa1 c.52.1.32 (A:4-139) FdxN element excision controlling factor protein {Anabaena variabilis [TaxId: 1172]}
Probab=26.39 E-value=16 Score=25.29 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=21.1
Q ss_pred hHHHHHhhcCCcEEecCCCCCeEEEecccc
Q psy9337 38 SVLINNFEKRGWIHVNSVEDDWNFYWAGIQ 67 (156)
Q Consensus 38 ~vV~~~l~~~Gw~~v~~~~~dWnv~W~~~~ 67 (156)
..|+.+|++-||.+++ + -..+-|.+..
T Consensus 6 ~~vk~aL~kdgW~It~-d--Pl~i~~~~~~ 32 (136)
T d2okfa1 6 EVVKTALKKDGWQITD-D--PLTISVGGVN 32 (136)
T ss_dssp HHHHHHHHHTTCEEEE-S--SCCCEETTEE
T ss_pred HHHHHHHHHcCCEEec-C--CeEEEECcEE
Confidence 4789999999999998 4 3566677654
No 4
>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.08 E-value=33 Score=20.34 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=30.4
Q ss_pred CCCccccccCCCCCcceEEEeC-CChhHHHHHhhcCCcEEec
Q psy9337 13 NGSGQQNVSLSDRQNKIYYCTD-LDKSVLINNFEKRGWIHVN 53 (156)
Q Consensus 13 ~~~~~~~~~~~~~~~~ir~~t~-~~~~vV~~~l~~~Gw~~v~ 53 (156)
.|-.+..|++......|.|... .....|.+++++.||..+-
T Consensus 34 ~gv~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~GY~~~~ 75 (79)
T d1kvja_ 34 NGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVI 75 (79)
T ss_dssp TTCSEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEE
T ss_pred CCceEEEEECCCCEEEEEECCCCCCHHHHHHHHHhcCCCcEe
Confidence 4556677788887767777644 5556789999999998765
No 5
>d2beia1 d.108.1.1 (A:3-169) Diamine acetyltransferase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.36 E-value=15 Score=23.42 Aligned_cols=34 Identities=9% Similarity=0.231 Sum_probs=24.7
Q ss_pred ceEEEeCCChhHHHHHhhcCCcEEecCCCCCeEEE
Q psy9337 28 KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFY 62 (156)
Q Consensus 28 ~ir~~t~~~~~vV~~~l~~~Gw~~v~~~~~dWnv~ 62 (156)
.|.-.+...|.--+...++.||+.+. +.++|.++
T Consensus 122 ~i~l~v~~~N~~A~~~Y~k~GF~~~~-~~~~y~~~ 155 (167)
T d2beia1 122 QFRLAVLDWNQRAMDLYKALGAQDLT-EAEGWHFF 155 (167)
T ss_dssp EEEEEEETTCHHHHHHHHHTTCEEHH-HHHCEEEE
T ss_pred ccceeeccCCHHHHHHHHHCCCEEcc-EecCcEEE
Confidence 45555666665567788999999998 66778765
No 6
>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]}
Probab=24.24 E-value=25 Score=20.31 Aligned_cols=40 Identities=15% Similarity=0.305 Sum_probs=28.3
Q ss_pred CCCccccccCCCCCcceEEEeC-CChhHHHHHhhcCCcEEe
Q psy9337 13 NGSGQQNVSLSDRQNKIYYCTD-LDKSVLINNFEKRGWIHV 52 (156)
Q Consensus 13 ~~~~~~~~~~~~~~~~ir~~t~-~~~~vV~~~l~~~Gw~~v 52 (156)
.|=.+..+++......+.|-.+ .....+.+.+++.||..+
T Consensus 28 ~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~~~ 68 (69)
T d2qifa1 28 DGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDVA 68 (69)
T ss_dssp TTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEEC
T ss_pred CCceEEEEECCCCEEEEEECCCCCCHHHHHHHHHHhCCccc
Confidence 4555667777776666777654 455668899999999865
No 7
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}
Probab=22.48 E-value=16 Score=21.39 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=27.5
Q ss_pred CCCccccccCCCCCcceEEEeC-CChhHHHHHhhcCCcEEe
Q psy9337 13 NGSGQQNVSLSDRQNKIYYCTD-LDKSVLINNFEKRGWIHV 52 (156)
Q Consensus 13 ~~~~~~~~~~~~~~~~ir~~t~-~~~~vV~~~l~~~Gw~~v 52 (156)
.|-.+..|++....-.|.|..+ .....|.+++++.||..+
T Consensus 32 ~gV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~vv 72 (72)
T d1p6ta1 32 PGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVV 72 (72)
T ss_dssp SSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCEEC
T ss_pred CCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHHhCCccC
Confidence 3455667777776666777543 334567889999999864
No 8
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=19.87 E-value=50 Score=19.64 Aligned_cols=28 Identities=7% Similarity=0.027 Sum_probs=21.7
Q ss_pred CCChhHHHHHhhcCCcEEecCCCCCeEEE
Q psy9337 34 DLDKSVLINNFEKRGWIHVNSVEDDWNFY 62 (156)
Q Consensus 34 ~~~~~vV~~~l~~~Gw~~v~~~~~dWnv~ 62 (156)
+....-+.+.|++.||.... +++.|.+.
T Consensus 19 ~i~~~~i~~~L~~Lg~~~~~-~~~~~~V~ 46 (75)
T d1jjcb2 19 SYPEAEQIAILKRLGCRVEG-EGPTYRVT 46 (75)
T ss_dssp CCCHHHHHHHHHHTTCEEEC-SSSSEEEE
T ss_pred CCCHHHHHHHHHHcCCceEe-cCCcEEEe
Confidence 56667789999999999665 66667774
No 9
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=18.17 E-value=45 Score=22.65 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=22.8
Q ss_pred CCCcceEEEe------CCChhHHHHHhhcCCcEEec
Q psy9337 24 DRQNKIYYCT------DLDKSVLINNFEKRGWIHVN 53 (156)
Q Consensus 24 ~~~~~ir~~t------~~~~~vV~~~l~~~Gw~~v~ 53 (156)
...++|...| +..+.+|..+|+..||..++
T Consensus 4 ~~~gkivi~tv~gD~HdiG~~iv~~~l~~~G~~Vi~ 39 (156)
T d3bula2 4 KTNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVD 39 (156)
T ss_dssp CCSCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEE
T ss_pred CcCCEEEEEeeCCChhhHHHHHHHHHHHHCCCEEEE
Confidence 4455666665 55667899999999999986
No 10
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.48 E-value=40 Score=19.54 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=27.1
Q ss_pred CCccccccCCCCCcceEEEeCCChhHHHHHhhcCCcE
Q psy9337 14 GSGQQNVSLSDRQNKIYYCTDLDKSVLINNFEKRGWI 50 (156)
Q Consensus 14 ~~~~~~~~~~~~~~~ir~~t~~~~~vV~~~l~~~Gw~ 50 (156)
|=.+..|++......|.|-.+....-|.+++++.||.
T Consensus 29 gV~~v~V~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~ 65 (72)
T d2ggpb1 29 GVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFD 65 (72)
T ss_dssp TEEEEEECTTTCEEEEEECSSCCHHHHHHHHHHTTCC
T ss_pred CceEEEEECCCCEEEEEECCCCCHHHHHHHHHHhCCC
Confidence 4445677887777677776666666788899999984
Done!