RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9337
(156 letters)
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB:
3tii_A* 3tin_A*
Length = 380
Score = 57.7 bits (139), Expect = 1e-10
Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Query: 45 EKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQIINHFPNHYELTN 98
W + +N + LG+ Q++N++ +L
Sbjct: 26 ASGQWKRLKRDNPKFNLMLG---ERNRLPFGRLGHEPGLVQLVNYYRGADKLCR 76
Score = 53.5 bits (128), Expect = 3e-09
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 105 GKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKN 142
+KFD+R +VLV + YL++ G R + Y
Sbjct: 199 HRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSDT 234
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.002
Identities = 19/142 (13%), Positives = 39/142 (27%), Gaps = 31/142 (21%)
Query: 18 QNVSLSDRQNK--IYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSL 75
SL ++Q K + + + E +H + V+ Y +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKL-ENEYALHRSIVD----HYNIPKTFDSDDLIP 466
Query: 76 ELGYRMNDNQIINHFPNHYELTNTPTARRGKKFDL--RLYVLVTSFRPLKCYLFKLGFCR 133
D +H +H L N ++ L +++ FR L+ +
Sbjct: 467 P----YLDQYFYSHIGHH--LKN---IEHPERMTLFRMVFL---DFRFLEQKIRHDSTAW 514
Query: 134 FCTV----------KYDKNITE 145
+ Y I +
Sbjct: 515 NASGSILNTLQQLKFYKPYICD 536
Score = 28.7 bits (63), Expect = 1.1
Identities = 15/115 (13%), Positives = 36/115 (31%), Gaps = 38/115 (33%)
Query: 37 KSVLINNFEKRGWIHVNSVEDDWNF--YWAGIQTCRNIFSL-----ELGYRM--NDNQII 87
K+ + + V+ +F +W ++ C + ++ +L Y++ N
Sbjct: 163 KTWVALDVCLS-----YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 88 NHFPNHYELTNTPTARRG------------------------KKFDLRLYVLVTS 118
+H N ++ A F+L +L+T+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Score = 27.5 bits (60), Expect = 2.6
Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 23/106 (21%)
Query: 20 VSLSDRQNKIYYCTDLDKSVLINNFEKRGWIHVNSV-EDDWNFYWAGIQT-CRNIFSLEL 77
+ D + L++ E+ V V ++ F + I+T R +
Sbjct: 55 IMSKDAVSGTLRLFWT----LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 78 GY-----RM-NDNQIINHFPNHYELTNTPTARRGKKFDLR--LYVL 115
Y R+ NDNQ+ F + N R LR L L
Sbjct: 111 MYIEQRDRLYNDNQV---FAKY----NVS--RLQPYLKLRQALLEL 147
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.23
Identities = 19/119 (15%), Positives = 28/119 (23%), Gaps = 52/119 (43%)
Query: 54 SVEDDW-NFYWAGIQTCRNIFSLELGYR----------------------------M--- 81
+ D W +F+ + + +F + G R M
Sbjct: 284 AETDSWESFFVSVRKAITVLFFI--GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 82 ---NDNQI------IN-HFPN----HYELTNTPTAR--RGKKFDLRLYVLVTSFRPLKC 124
Q+ N H P L N G L Y L + R K
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL--YGLNLTLRKAKA 398
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli,
hydrolase; 1.90A {Escherichia coli}
Length = 303
Score = 29.1 bits (66), Expect = 0.46
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 17/57 (29%)
Query: 4 ASTKYPYQANGSGQQNVSLSD-------RQNKIYYCTDLDKSVLINN-----FEKRG 48
AST S Q VSL D Q KIYY T + ++ K+G
Sbjct: 175 ASTH-----TDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKG 226
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 28.6 bits (64), Expect = 0.91
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 12/51 (23%)
Query: 10 YQANGSGQQNVSLSD-------RQNKIYYCT-----DLDKSVLINNFEKRG 48
Y + S + SL+D Q IYY T ++KS ++ + +
Sbjct: 445 YNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKN 495
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage
PHICD27}
Length = 180
Score = 27.6 bits (62), Expect = 1.2
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 19/84 (22%)
Query: 50 IHVNSVEDDWNFYWAGIQT-CRNIFSLELGYRMNDNQIINHFPNHYELTNTPTARRGKKF 108
+H+N+ G + + LE R+ +++ F N RG K
Sbjct: 84 LHLNASNGQGK----GSEVLYYSNKGLEYATRIC-DKLGTVFKN-----------RGAKL 127
Query: 109 DLRLYVLVTSFRPLKCYLFKLGFC 132
D RLY+L +S L + FC
Sbjct: 128 DKRLYILNSSKPT--AVLIESFFC 149
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 28.1 bits (63), Expect = 1.3
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 12/46 (26%)
Query: 15 SGQQNVSLSD-------RQNKIYYCTDLDKSVLINN-----FEKRG 48
SG + VSL D Q IYY T K + N+ K G
Sbjct: 180 SGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHG 225
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 27.6 bits (62), Expect = 1.7
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 12/46 (26%)
Query: 15 SGQQNVSLSD-------RQNKIYYCTDLDKSVLINN-----FEKRG 48
S + SL+D Q IYY T + + + +
Sbjct: 178 SVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKN 223
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator,
HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8
PDB: 1usv_A
Length = 260
Score = 27.5 bits (62), Expect = 1.8
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 12/51 (23%)
Query: 10 YQANGSGQQNVSLSD-------RQNKIYYCTDLDKSVLINN-----FEKRG 48
Y + S + SL+D Q IYY T + + + +
Sbjct: 175 YNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKN 225
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 27.7 bits (62), Expect = 1.8
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 12/46 (26%)
Query: 15 SGQQNVSLSD-------RQNKIYYCTDLDKSVLINN-----FEKRG 48
SG++ +L D Q IYY T K L + +RG
Sbjct: 196 SGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRG 241
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 27.2 bits (61), Expect = 2.5
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 19/57 (33%)
Query: 4 ASTKYPYQANGSGQQNVSLSD-------RQNKIYYCT-----DLDKSVLINNFEKRG 48
STK S + SL+D Q IYY T ++KS ++ + +
Sbjct: 174 NSTK-------SVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKN 223
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural
genomics consortium, SGC, HE protein, chaperone; 2.28A
{Homo sapiens}
Length = 268
Score = 27.1 bits (61), Expect = 2.5
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 12/46 (26%)
Query: 15 SGQQNVSLSD-------RQNKIYYCTDLDKSVLINN-----FEKRG 48
SG + SLS+ Q IYY T K + N+ KRG
Sbjct: 180 SGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRG 225
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 27.2 bits (61), Expect = 2.8
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 17/57 (29%)
Query: 4 ASTKYPYQANGSGQQNVSLSD-------RQNKIYYCTDLDKSVLINN-----FEKRG 48
AST S Q VSL D Q KIYY T + ++ K+G
Sbjct: 403 ASTH-----TDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKG 454
>1y6z_A Heat shock protein, putative; chaperone, structural genomics,
structural genom consortium, SGC, unknown function;
1.88A {Plasmodium falciparum}
Length = 263
Score = 26.4 bits (59), Expect = 3.7
Identities = 8/46 (17%), Positives = 12/46 (26%), Gaps = 12/46 (26%)
Query: 15 SGQQNVSLSD-------RQNKIYYCT-----DLDKSVLINNFEKRG 48
SG + L Q IYY + S + +
Sbjct: 183 SGDKKTDLDSYIENMKEDQKCIYYISGENKKTAQNSPSLEKLKALN 228
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 26.5 bits (59), Expect = 4.9
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 12/46 (26%)
Query: 15 SGQQNVSLSD-------RQNKIYYCTDLDKSVLINN-----FEKRG 48
SL +Q+KIY+ + ++ K+G
Sbjct: 429 HPSDITSLDQYVERMKEKQDKIYFMAGSSRKEAESSPFVERLLKKG 474
>3ghj_A Putative integron gene cassette protein; integron cassette
protein, mobIle metagenome, structural genomics, PSI-2;
1.47A {Uncultured bacterium}
Length = 141
Score = 25.7 bits (57), Expect = 5.7
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 19/73 (26%)
Query: 6 TKYPYQANGSGQQNVSLSDRQNKI-------YYCTDLDKS------VLINNFEKRGWIHV 52
+ + + + SG++N+ I +L+KS +L FE
Sbjct: 3 SSHHHHHHSSGRENLYFQGVPMNIKGLFEVAVKVKNLEKSSQFYTEIL--GFEAGLLDS- 59
Query: 53 NSVEDDWNFYWAG 65
WNF W
Sbjct: 60 ---ARRWNFLWVS 69
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 26.0 bits (58), Expect = 6.2
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 17/57 (29%)
Query: 4 ASTKYPYQANGSGQQNVSLSD---R----QNKIYYCTDLDKSVLINN-----FEKRG 48
AST S Q VSL D R Q KIYY T + ++ K+G
Sbjct: 403 ASTH-----TDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKG 454
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.436
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,401,810
Number of extensions: 127504
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 23
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.6 bits)