RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9337
         (156 letters)



>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia
          coli [TaxId: 562]}
          Length = 87

 Score = 24.0 bits (52), Expect = 4.2
 Identities = 4/37 (10%), Positives = 10/37 (27%)

Query: 48 GWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDN 84
           +I    +    +      +        E  Y++ D 
Sbjct: 30 AFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDV 66


>d2buda1 b.34.13.3 (A:367-454) Putative histone acetyltransferase
          MOF {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 88

 Score = 23.4 bits (50), Expect = 9.0
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 18 QNVSLSDRQNKIYYCTDLDKSV 39
          Q + +S+  +KIY+    D +V
Sbjct: 5  QKIDISENPDKIYFIRREDGTV 26


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 613,643
Number of extensions: 27149
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 4
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (22.8 bits)