BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9338
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BLW|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|I Chain I, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|K Chain K, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|M Chain M, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|O Chain O, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|A Chain A, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|C Chain C, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|E Chain E, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|G Chain G, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|I Chain I, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|K Chain K, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|M Chain M, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|O Chain O, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 349
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 55/86 (63%)
Query: 44 SWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLK 103
++ + VFEPG+RH + G+NVANPTAM+L ST ML+H+ L Y I AV+ +
Sbjct: 261 NFGRDYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLMLNHLGLNEYATRISKAVHETIA 320
Query: 104 AGKVRTKDLGGQSTTQEYTYAVIANL 129
GK T+D+GG S+T ++T +I L
Sbjct: 321 EGKHTTRDIGGSSSTTDFTNEIINKL 346
>pdb|3BLV|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%)
Query: 44 SWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLK 103
++ + VFEPG+RH + G+NVANPTA +L ST L+H+ L Y I AV+ +
Sbjct: 261 NFGRDYAVFEPGSRHVGLDIKGQNVANPTAXILSSTLXLNHLGLNEYATRISKAVHETIA 320
Query: 104 AGKVRTKDLGGQSTTQEYTYAVIANL 129
GK T+D+GG S+T ++T +I L
Sbjct: 321 EGKHTTRDIGGSSSTTDFTNEIINKL 346
>pdb|3BLW|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|J Chain J, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|L Chain L, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|N Chain N, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|P Chain P, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|B Chain B, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|D Chain D, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|F Chain F, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|H Chain H, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|J Chain J, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|L Chain L, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|N Chain N, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|P Chain P, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 354
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAG-KVRT 109
+FE + + G++ ANPTA+LL S ML+H+ L + D I+NAV + +G + RT
Sbjct: 276 IFE-AVHGSAPDIAGQDKANPTALLLSSVMMLNHMGLTNHADQIQNAVLSTIASGPENRT 334
Query: 110 KDLGGQSTTQEYTYAVIANL 129
DL G +TT +T AVI L
Sbjct: 335 GDLAGTATTSSFTEAVIKRL 354
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
pdb|1X0L|B Chain B, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
Length = 333
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGKVRTK 110
VFEP + + GK +ANPTA +L + ML ++ + + AV+ VL+ G RT
Sbjct: 254 VFEP-VHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVEKAVDLVLERGP-RTP 311
Query: 111 DLGGQSTTQEYTYAVIANLK 130
DLGG +TT+ +T AV+ LK
Sbjct: 312 DLGGDATTEAFTEAVVEALK 331
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|C Chain C, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|D Chain D, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
Length = 334
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGKVRTK 110
VFEP + + GK +ANPTA +L + ML ++ + + AV+ VL+ G RT
Sbjct: 255 VFEP-VHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVEKAVDLVLERGP-RTP 312
Query: 111 DLGGQSTTQEYTYAVIANLK 130
DLGG +TT+ +T AV+ LK
Sbjct: 313 DLGGDATTEAFTEAVVEALK 332
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGKVRTK 110
VFEP + + GK +ANPTA +L + ML ++ + + AV+ VL+ G + T
Sbjct: 255 VFEP-VHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVEKAVDLVLERGPM-TP 312
Query: 111 DLGGQSTTQEYTYAVIANLK 130
DLGG +TT+ +T AV+ LK
Sbjct: 313 DLGGDATTEAFTEAVVEALK 332
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 48 ECVVFEP--GARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAG 105
E +FE G+ Y+ GKNV NPTA+LL + ML ++ D+I NA+ L+ G
Sbjct: 272 EVAIFEAVHGSAPKYA---GKNVINPTAVLLSAVMMLRYLEEFATADLIENALLYTLEEG 328
Query: 106 KVRTKDLGGQ---STTQEYTYAVIANL 129
+V T D+ G + T EYT A+I NL
Sbjct: 329 RVLTGDVVGYDRGAKTTEYTEAIIQNL 355
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY3|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY4|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
pdb|3TY4|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
Length = 366
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 37/65 (56%)
Query: 65 GKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYA 124
G+ +ANP A ML + Q I AV++VL GKV T DLGG+S T E T A
Sbjct: 300 GRGIANPVATFRSVALMLEFMGHQDAAADIYTAVDKVLTEGKVLTPDLGGKSGTNEITDA 359
Query: 125 VIANL 129
V+AN+
Sbjct: 360 VLANI 364
>pdb|3BLV|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAG-KVRT 109
+FE + + G++ ANPTA+LL S L+H L + D I+NAV + +G + RT
Sbjct: 276 IFE-AVHGSAPDIAGQDKANPTALLLSSVXXLNHXGLTNHADQIQNAVLSTIASGPENRT 334
Query: 110 KDLGGQSTTQEYTYAVIANL 129
DL G +TT +T AVI L
Sbjct: 335 GDLAGTATTSSFTEAVIKRL 354
>pdb|3FMX|X Chain X, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Putida Complexed With Nadh
Length = 364
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVN-----LQYYGDMIRNAVNRVLKAG 105
+FEP + + GKN+ANP AM+ ML + Q D + NA+ RV+ G
Sbjct: 279 LFEP-VHGSAPDIFGKNIANPIAMIWSGALMLEFLGQGDERYQRAHDDMLNAIERVIADG 337
Query: 106 KVRTKDLGGQSTTQEYTYAV 125
V T D+GG +TQ+ A+
Sbjct: 338 SV-TPDMGGTLSTQQVGAAI 356
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHV-NLQYYGDMIRNAVNRVLKAGKVRT 109
VFEP + + GK +ANPTA +L + ML H L + +AV + L +
Sbjct: 268 VFEP-VHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALL--ETPP 324
Query: 110 KDLGGQSTTQEYTYAVIANL 129
DLGG + T+ +T V+ +L
Sbjct: 325 PDLGGSAGTEAFTATVLRHL 344
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHV-NLQYYGDMIRNAVNRVLKAGKVRT 109
VFEP + + GK +ANPTA +L + ML H L + +AV + L +
Sbjct: 268 VFEP-VHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALL--ETPP 324
Query: 110 KDLGGQSTTQEYTYAVIANL 129
DLGG + T+ +T V+ +L
Sbjct: 325 PDLGGSAGTEAFTATVLRHL 344
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHV-NLQYYGDMIRNAVNRVLKAGKVRT 109
VFEP + + GK +ANPTA +L + ML H L + +AV + L +
Sbjct: 266 VFEP-VHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALL--ETPP 322
Query: 110 KDLGGQSTTQEYTYAVIANL 129
DLGG + T+ +T V+ +L
Sbjct: 323 PDLGGSAGTEAFTATVLRHL 342
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHV-NLQYYGDMIRNAVNRVLKAGKVRT 109
VFEP + + GK +ANPTA +L + ML H L + +AV + L +
Sbjct: 268 VFEP-VHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALL--ETPP 324
Query: 110 KDLGGQSTTQEYTYAVIANL 129
DLGG + T+ +T V+ +L
Sbjct: 325 PDLGGSAGTEAFTATVLRHL 344
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHV-NLQYYGDMIRNAVNRVLKAGKVRT 109
VFEP + + GK +ANPTA +L + ML H L + +AV + L +
Sbjct: 268 VFEP-VHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALL--ETPP 324
Query: 110 KDLGGQSTTQEYTYAVIANL 129
DLGG + T+ +T V+ +L
Sbjct: 325 PDLGGSAGTEAFTATVLRHL 344
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHV-NLQYYGDMIRNAVNRVLKAGKVRT 109
VFEP + + GK +ANPTA +L + ML H L + +AV + L +
Sbjct: 268 VFEP-VHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALL--ETPP 324
Query: 110 KDLGGQSTTQEYTYAVIANL 129
DLGG + T+ +T V+ +L
Sbjct: 325 PDLGGSAGTEAFTATVLRHL 344
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHV-NLQYYGDMIRNAVNRVLKAGKVRT 109
VFEP + + GK +ANPTA +L + ML H L + +AV + L +
Sbjct: 268 VFEP-VHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALL--ETPP 324
Query: 110 KDLGGQSTTQEYTYAVIANL 129
DLGG + T+ +T V+ +L
Sbjct: 325 PDLGGSAGTEAFTATVLRHL 344
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHV-NLQYYGDMIRNAVNRVLKAGKVRT 109
VFEP + + GK +ANPTA +L + ML H L + +AV + L +
Sbjct: 268 VFEP-VHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALL--ETPP 324
Query: 110 KDLGGQSTTQEYTYAVIANL 129
DLGG + T+ +T V+ +L
Sbjct: 325 PDLGGSAGTEAFTATVLRHL 344
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAGKVRT 109
VFEP + + GK +ANPTA +L + ML H L + +AV + L +
Sbjct: 268 VFEP-VHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALL--ETPP 324
Query: 110 KDLGGQSTTQEYTYAVIANL 129
DLGG + T+ +T V+ +L
Sbjct: 325 PDLGGSAGTEAFTATVLRHL 344
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHV-NLQYYGDMIRNAVNRVLKAGKVRT 109
VFEP + + GK +ANPTA +L + ML H L + +AV + L +
Sbjct: 268 VFEP-VHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALL--ETPP 324
Query: 110 KDLGGQSTTQEYTYAVIANL 129
DLGG + T+ +T V A +
Sbjct: 325 PDLGGSAGTEAFTATVTATV 344
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHV-NLQYYGDMIRNAVNRVLKAGKVRT 109
VFEP + + GK +ANPTA +L + ML H L + +AV + L +
Sbjct: 271 VFEP-VHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALL--ETPP 327
Query: 110 KDLGGQSTTQEYTYAVI 126
DLGG + T+ +T V+
Sbjct: 328 PDLGGSAGTEAFTATVL 344
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHV-NLQYYGDMIRNAVNRVLKAGKVRT 109
VFEP + + GK +ANPTA +L + ML H L + +AV + L +
Sbjct: 268 VFEP-VHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALL--ETPP 324
Query: 110 KDLGGQSTTQEYTYAVIA 127
DLGG + T+ +T V A
Sbjct: 325 PDLGGSAGTEAFTATVEA 342
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHV-NLQYYGDMIRNAVNRVLKAGKVRT 109
VFEP + + GK +ANPTA +L + ML H L + +AV + L +
Sbjct: 268 VFEP-VHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALL--ETPP 324
Query: 110 KDLGGQSTTQEYTYAV 125
DLGG + T+ +T V
Sbjct: 325 PDLGGSAGTEAFTATV 340
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 51 VFEP--GARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGKVR 108
VFEP G+ Y+ G+N NPTA +L M ++ + +MI+ AV + +G V
Sbjct: 328 VFEPVHGSAPKYA---GQNKVNPTAEILTGALMFEYIGWKDASEMIKKAVEMTISSGIVT 384
Query: 109 T---KDLGGQST-TQEYTYAVIANLK 130
+ +GG T+E+ AV+ NL+
Sbjct: 385 YDIHRHMGGTKVGTREFAEAVVENLQ 410
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHV----NLQYY---GDMIRNAVNRVLK 103
+FEP + A GKN+ NPTA LL + M + N Y + NA+ V K
Sbjct: 251 LFEPVHGAAFDIA-GKNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYLVYK 309
Query: 104 AGKVRTKDLGGQSTTQE 120
K T D+GG +TT +
Sbjct: 310 ERKALTPDVGGNATTDD 326
>pdb|3FLK|A Chain A, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|B Chain B, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|C Chain C, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|D Chain D, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
Length = 364
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVN-----LQYYGDMIRNAVNRVLKAG 105
+FEP + + GKN+ANP A + L + Q D NA+ RV+ G
Sbjct: 279 LFEP-VHGSAPDIFGKNIANPIAXIWSGALXLEFLGQGDERYQRAHDDXLNAIERVIADG 337
Query: 106 KVRTKDLGGQSTTQEYTYAV 125
V T D GG +TQ+ A+
Sbjct: 338 SV-TPDXGGTLSTQQVGAAI 356
>pdb|2D4V|A Chain A, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|B Chain B, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|C Chain C, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|D Chain D, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
Length = 429
Score = 35.4 bits (80), Expect = 0.010, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 51 VFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGKVRT 109
+FE A H T + G+ ANP++++L + ML H+ I A+N + AG+V T
Sbjct: 347 IFE--ATHGTAPDIAGQGKANPSSLILSAVMMLEHLGWGEAAQAIVAAMNATIAAGEV-T 403
Query: 110 KDLGGQS------TTQEYTYAVI 126
DL +T E+T A+I
Sbjct: 404 GDLAALRGDVPALSTTEFTAALI 426
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAGKVRT 109
++EP A + + GKN+ANP A +L +L + ++ I A+NR L+ G VRT
Sbjct: 279 LYEP-AGGSAPDIAGKNIANPIAQILSLALLLRYSLDANDAATAIEQAINRALEEG-VRT 336
Query: 110 KDL 112
DL
Sbjct: 337 GDL 339
>pdb|2DHT|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2DHT|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2E0C|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E0C|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E5M|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
pdb|2E5M|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
Length = 409
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 59 TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGKVRTKDLG 113
T + GKNVANPT ++ ML + D+I A+N ++ KV T+D+
Sbjct: 332 TAPKYAGKNVANPTGIIKAGELMLRWMGWNEAADLIEKAINMAIRDKKV-TQDIA 385
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAGKVRT 109
++EP + + G++ ANP A +L ML H +N + + + AV RVL G +RT
Sbjct: 273 MYEP-IHGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPWAQRVEAAVQRVLDQG-LRT 330
Query: 110 KDLGGQST 117
D+ T
Sbjct: 331 ADIAAPGT 338
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAGKVRT 109
++EP + + GK +ANP A +L + ML + L+ I AV +VL G RT
Sbjct: 295 LYEP-VHGSAPDIAGKGIANPLATILSAAMMLRYSFGLEEEAKAIEKAVEKVLAEG-YRT 352
Query: 110 KDL---GGQ--STTQ---EYTYAVIANL 129
D+ GG+ STT+ E AV+ L
Sbjct: 353 ADIAKPGGKYVSTTEMTDEVKAAVVDEL 380
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase
(tm0556) From Thermotoga Maritima At 1.90 A Resolution
Length = 366
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAGKVRT 109
++EP A + + GKN+ANP A +L ML H + I AV V++ G RT
Sbjct: 281 LYEP-AGGSAPDIAGKNIANPIAQILSLAMMLEHSFGMVEEARKIERAVELVIEEG-YRT 338
Query: 110 KDL 112
+D+
Sbjct: 339 RDI 341
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
pdb|1CM7|B Chain B, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
Length = 363
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAGKVRT 109
++EP A + + GKN+ANP A +L +L + ++ I A+NR L+ G +RT
Sbjct: 279 LYEP-AGGSAPDIAGKNIANPIAQILSLALLLRYSLDADDAACAIERAINRALEEG-IRT 336
Query: 110 KDL 112
DL
Sbjct: 337 GDL 339
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
pdb|4IWH|B Chain B, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
Length = 363
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAGKVRT 109
++EP + + + GK +ANP A +L + +L + +N D I AV VL+ G RT
Sbjct: 282 LYEP-SHGSAPDIAGKGIANPLATILSAAMLLRYSLNRAEQADRIERAVKTVLEQG-YRT 339
Query: 110 KDLGGQSTTQEYTYAV 125
D+ Q T A+
Sbjct: 340 GDIATPGCRQVGTAAM 355
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 105
+FEP A + + GK +ANP A +L + ML H + + I AV + L +G
Sbjct: 288 LFEP-AGGSAPDIAGKGIANPIAQILSAALMLRHSLKQEEAASAIERAVTKALNSG 342
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 48 ECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 106
EC +FE A H T + G++ NP +++L + ML H+ D+I + + A
Sbjct: 331 ECALFE--ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKT 388
Query: 107 V-----RTKDLGGQSTTQEYTYAVIANL 129
V R D E+ A+I N+
Sbjct: 389 VTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 48 ECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 106
EC +FE A H T + G++ NP +++L + ML H+ D+I + + A
Sbjct: 331 ECALFE--ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKT 388
Query: 107 V-----RTKDLGGQSTTQEYTYAVIANL 129
V R D E+ A+I N+
Sbjct: 389 VTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 48 ECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 106
EC +FE A H T + G++ NP +++L + ML H+ D+I + + A
Sbjct: 331 ECALFE--ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKT 388
Query: 107 V-----RTKDLGGQSTTQEYTYAVIANL 129
V R D E+ A+I N+
Sbjct: 389 VTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 48 ECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 106
EC +FE A H T + G++ NP +++L + ML H+ D+I + + A
Sbjct: 331 ECALFE--ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKT 388
Query: 107 V-----RTKDLGGQSTTQEYTYAVIANL 129
V R D E+ A+I N+
Sbjct: 389 VTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation
Involves No Long-Range Conformational Change In The Free
Enzyme
Length = 416
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 48 ECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 106
EC +FE A H T + G++ NP +++L + ML H+ D+I + + A
Sbjct: 331 ECALFE--ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKT 388
Query: 107 V-----RTKDLGGQSTTQEYTYAVIANL 129
V R D E+ A+I N+
Sbjct: 389 VTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 48 ECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 106
EC +FE A H T + G++ NP +++L + ML H+ D+I + + A
Sbjct: 329 ECALFE--ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKT 386
Query: 107 V-----RTKDLGGQSTTQEYTYAVIANL 129
V R D E+ A+I N+
Sbjct: 387 VTYDFERLMDGAKLLKCSEFGDAIIENM 414
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 48 ECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 106
EC +FE A H T + G++ NP +++L + ML H+ D+I + + A
Sbjct: 331 ECALFE--ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKT 388
Query: 107 V-----RTKDLGGQSTTQEYTYAVIANL 129
V R D E+ A+I N+
Sbjct: 389 VTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 48 ECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 106
EC +FE A H T + G++ NP +++L + ML H+ D+I + + A
Sbjct: 331 ECALFE--ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKT 388
Query: 107 V-----RTKDLGGQSTTQEYTYAVIANL 129
V R D E+ A+I N+
Sbjct: 389 VTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 48 ECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 106
EC +FE A H T + G++ NP +++L + ML H+ D+I + + A
Sbjct: 331 ECALFE--ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKT 388
Query: 107 V-----RTKDLGGQSTTQEYTYAVIANL 129
V R D E+ A+I N+
Sbjct: 389 VTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 48 ECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 106
EC +FE A H T + G++ NP +++L + ML H+ D+I + + A
Sbjct: 331 ECALFE--ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKT 388
Query: 107 V-----RTKDLGGQSTTQEYTYAVIANL 129
V R D E+ A+I N+
Sbjct: 389 VTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 48 ECVVFEPGARHTYSEA-VGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 106
EC +FE A H + A G++ NP +++L + ML H+ D+I + + A
Sbjct: 331 ECALFE--ATHGTAPAYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKT 388
Query: 107 V-----RTKDLGGQSTTQEYTYAVIANL 129
V R D E+ A+I N+
Sbjct: 389 VTYDFERLMDGAKLLKCSEFGDAIIENM 416
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|B Chain B, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|C Chain C, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|D Chain D, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|E Chain E, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|F Chain F, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|G Chain G, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|H Chain H, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAGKVRT 109
++EP A + + N+ANP A +L + ML + + I NA++ L GK+ T
Sbjct: 276 LYEP-AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGKM-T 333
Query: 110 KDLGGQS 116
KDL +S
Sbjct: 334 KDLNAKS 340
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 29.6 bits (65), Expect = 0.54, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 48 ECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 106
E +FE A H T + G++ ANP +++L + ML H+ D+I + + A K
Sbjct: 331 EYALFE--ATHGTAPDIAGQDKANPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINA-K 387
Query: 107 VRTKDL 112
TKD
Sbjct: 388 TVTKDF 393
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 105
++EP A + + G+ +ANP A +L + +L H + L+ I AV++ L +G
Sbjct: 288 MYEP-AGGSAPDIAGQGIANPVAQILSAALLLRHSLKLEDAALAIEAAVSKALNSG 342
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From
Burkholderia Pseudomallei
Length = 427
Score = 28.9 bits (63), Expect = 0.85, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 46 SPECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKA 104
S +FE A H T + GK+ NP + +L + ML H+ D+I +A+ + +K
Sbjct: 339 SDSVAMFE--ATHGTAPKYAGKDYVNPGSEILSAEMMLRHLGWTEAADVIISAMEKSIKQ 396
Query: 105 GKV 107
+V
Sbjct: 397 KRV 399
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
pdb|3VMK|B Chain B, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
Length = 375
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 105
++EP A + + G+ +ANP A +L + +L H + L+ I AV++ L G
Sbjct: 288 MYEP-AGGSAPDIAGQGIANPVAQILSAALLLRHSLKLEDAALAIEAAVSKALSDG 342
>pdb|4G9I|A Chain A, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|B Chain B, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|C Chain C, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|D Chain D, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|E Chain E, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|F Chain F, Crystal Structure Of T.Kodakarensis Hypf
Length = 772
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 57 RHTYSEAVGKNV-ANPTAMLLC--STKMLSHVNLQYYGDMIRNAVNRVLKAGKVRTKDLG 113
R Y + + + A PTA +C S ++ + + YGD +R A + K V K +G
Sbjct: 163 RSEYEDPLNRRYHAEPTACPVCGPSYRLYTSDGQEIYGDPLRKAAELIDKGYIVAIKGIG 222
Query: 114 G 114
G
Sbjct: 223 G 223
>pdb|1W0D|A Chain A, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|B Chain B, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|C Chain C, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|D Chain D, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|2G4O|A Chain A, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|B Chain B, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|C Chain C, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|D Chain D, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
Length = 337
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 51 VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVN 86
+FEP + + G+ +A+PTA ++ +LSH+
Sbjct: 266 MFEP-VHGSAPDIAGQGIADPTAAIMSVALLLSHLG 300
>pdb|3VHX|B Chain B, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|D Chain D, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|F Chain F, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|H Chain H, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 120
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 50 VVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGKVRT 109
V +P H A+ +VAN A+ C ML+H L G++ +++K +T
Sbjct: 41 TVMQPHVPH----AITVSVANEKALAKCEKYMLTHQELASDGEI----ETKLIKGDIYKT 92
Query: 110 KDLGGQS 116
+ GGQS
Sbjct: 93 RG-GGQS 98
>pdb|1D4M|4 Chain 4, The Crystal Structure Of Coxsackievirus A9 To 2.9 A
Resolution
Length = 68
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 66 KNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNR 100
K A+ T++ ++ + N+ YY D N+ NR
Sbjct: 8 KTGAHETSLSAAGNSIIHYTNINYYKDAASNSANR 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,493,568
Number of Sequences: 62578
Number of extensions: 108894
Number of successful extensions: 271
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 61
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)