Query psy9338
Match_columns 130
No_of_seqs 165 out of 1105
Neff 5.8
Searched_HMMs 46136
Date Sat Aug 17 00:44:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0473 LeuB Isocitrate/isopro 100.0 6.3E-56 1.4E-60 367.0 11.7 125 5-130 218-346 (348)
2 TIGR00175 mito_nad_idh isocitr 100.0 9.8E-55 2.1E-59 360.5 11.2 125 5-129 207-333 (333)
3 PRK08997 isocitrate dehydrogen 100.0 1.3E-54 2.9E-59 359.7 11.3 124 5-129 209-334 (334)
4 PLN00123 isocitrate dehydrogen 100.0 3.5E-54 7.5E-59 359.8 11.6 126 5-130 230-360 (360)
5 PRK14025 multifunctional 3-iso 100.0 4.5E-54 9.7E-59 356.1 11.5 122 6-129 207-330 (330)
6 PRK08194 tartrate dehydrogenas 100.0 8.4E-54 1.8E-58 357.0 10.7 124 5-130 222-350 (352)
7 PLN00118 isocitrate dehydrogen 100.0 1.4E-53 3E-58 357.6 11.1 124 5-129 246-372 (372)
8 TIGR02089 TTC tartrate dehydro 100.0 1.5E-53 3.3E-58 355.5 10.9 123 5-129 225-352 (352)
9 PLN02329 3-isopropylmalate deh 100.0 4.5E-53 9.7E-58 357.7 10.7 124 5-130 271-402 (409)
10 KOG0785|consensus 100.0 1.8E-52 3.8E-57 342.6 10.6 123 6-129 241-365 (365)
11 PRK06451 isocitrate dehydrogen 100.0 3.2E-52 7E-57 353.1 10.9 124 5-130 279-409 (412)
12 TIGR00169 leuB 3-isopropylmala 100.0 3.7E-52 8E-57 346.9 10.8 123 5-129 223-349 (349)
13 PRK07006 isocitrate dehydrogen 100.0 3.6E-52 7.7E-57 352.7 10.9 123 5-129 279-409 (409)
14 TIGR02924 ICDH_alpha isocitrat 100.0 7.5E-52 1.6E-56 355.0 11.4 123 5-129 207-337 (473)
15 PRK07362 isocitrate dehydrogen 100.0 7E-52 1.5E-56 353.5 10.8 122 6-129 344-474 (474)
16 TIGR00183 prok_nadp_idh isocit 100.0 7.7E-52 1.7E-56 351.4 10.9 122 6-129 287-416 (416)
17 PRK09222 isocitrate dehydrogen 100.0 1.7E-51 3.6E-56 353.6 11.3 123 5-129 211-341 (482)
18 PRK00772 3-isopropylmalate deh 100.0 5.3E-51 1.1E-55 340.8 10.7 124 5-130 226-356 (358)
19 PRK03437 3-isopropylmalate deh 100.0 5.1E-50 1.1E-54 333.5 10.8 118 5-129 222-344 (344)
20 PF00180 Iso_dh: Isocitrate/is 100.0 5.4E-50 1.2E-54 333.3 5.6 119 5-125 222-348 (348)
21 TIGR02088 LEU3_arch isopropylm 100.0 5.9E-49 1.3E-53 324.7 10.1 120 5-126 201-322 (322)
22 PRK08299 isocitrate dehydrogen 100.0 3.9E-48 8.5E-53 327.1 11.1 123 5-130 253-399 (402)
23 PLN00103 isocitrate dehydrogen 100.0 2.5E-46 5.5E-51 316.7 10.9 123 5-130 257-407 (410)
24 PTZ00435 isocitrate dehydrogen 100.0 3.5E-46 7.6E-51 315.9 10.8 123 5-130 256-407 (413)
25 KOG0784|consensus 100.0 7.7E-46 1.7E-50 306.0 10.0 125 6-130 247-373 (375)
26 PLN00096 isocitrate dehydrogen 100.0 2.9E-45 6.4E-50 308.0 11.1 123 5-129 248-393 (393)
27 TIGR00127 nadp_idh_euk isocitr 100.0 3.7E-45 8.1E-50 309.4 11.0 122 5-129 254-403 (409)
28 PLN03065 isocitrate dehydrogen 100.0 8.4E-43 1.8E-47 299.3 11.1 123 5-130 324-474 (483)
29 KOG0786|consensus 100.0 1.9E-41 4.2E-46 273.4 9.4 124 4-129 225-358 (363)
30 COG0538 Icd Isocitrate dehydro 100.0 4.7E-39 1E-43 268.9 9.4 123 6-130 276-407 (407)
31 KOG1526|consensus 99.6 9.2E-15 2E-19 121.2 7.7 122 6-130 266-414 (422)
32 TIGR00178 monomer_idh isocitra 96.2 0.012 2.5E-07 53.3 5.9 97 17-113 539-652 (741)
33 PF03971 IDH: Monomeric isocit 96.0 0.012 2.7E-07 53.1 5.3 98 17-114 535-649 (735)
34 PF04166 PdxA: Pyridoxal phosp 95.8 0.0064 1.4E-07 50.5 2.6 64 10-80 229-296 (298)
35 PRK03371 pdxA 4-hydroxythreoni 95.2 0.015 3.3E-07 48.8 2.8 63 13-82 257-323 (326)
36 PRK00232 pdxA 4-hydroxythreoni 95.1 0.016 3.5E-07 48.8 2.7 46 37-83 278-325 (332)
37 PRK03743 pdxA 4-hydroxythreoni 95.0 0.018 3.8E-07 48.6 2.7 64 13-83 258-325 (332)
38 COG2838 Icd Monomeric isocitra 94.9 0.041 8.9E-07 49.2 4.7 100 14-113 537-654 (744)
39 TIGR00557 pdxA 4-hydroxythreon 94.9 0.021 4.5E-07 47.9 2.7 44 38-82 272-317 (320)
40 PRK01909 pdxA 4-hydroxythreoni 94.9 0.02 4.4E-07 48.2 2.7 46 37-83 274-321 (329)
41 PRK05312 pdxA 4-hydroxythreoni 94.8 0.021 4.6E-07 48.1 2.7 45 38-83 284-330 (336)
42 PRK02746 pdxA 4-hydroxythreoni 94.8 0.023 4.9E-07 48.2 2.7 64 13-83 271-338 (345)
43 PRK03946 pdxA 4-hydroxythreoni 94.7 0.024 5.2E-07 47.3 2.7 45 38-83 255-302 (307)
44 COG1995 PdxA Pyridoxal phospha 94.6 0.025 5.5E-07 47.6 2.4 43 38-81 278-322 (332)
45 PF03469 XH: XH domain; Inter 52.9 39 0.00085 25.0 5.0 42 89-130 73-126 (132)
46 PF07944 DUF1680: Putative gly 40.3 44 0.00095 29.4 4.2 85 19-113 258-344 (520)
47 KOG1671|consensus 37.0 23 0.0005 28.3 1.7 39 32-71 151-189 (210)
48 PF11811 DUF3331: Domain of un 34.7 51 0.0011 23.2 3.0 33 40-80 59-91 (96)
49 TIGR00006 S-adenosyl-methyltra 33.8 1E+02 0.0022 25.7 5.2 43 78-128 146-188 (305)
50 PF14213 DUF4325: Domain of un 31.9 64 0.0014 20.7 3.0 39 90-128 2-41 (74)
51 PF08769 Spo0A_C: Sporulation 31.8 89 0.0019 21.9 3.9 18 113-130 89-106 (106)
52 KOG0354|consensus 29.8 20 0.00043 33.6 0.4 61 61-124 73-151 (746)
53 COG0421 SpeE Spermidine syntha 28.6 27 0.00059 28.7 0.9 23 1-23 135-158 (282)
54 PRK13690 hypothetical protein; 27.0 1.8E+02 0.0038 22.9 5.1 43 87-129 3-59 (184)
55 TIGR02364 dha_pts dihydroxyace 26.1 64 0.0014 23.2 2.4 37 87-123 41-79 (125)
56 cd03470 Rieske_cytochrome_bc1 26.0 48 0.001 23.9 1.8 24 47-71 82-105 (126)
57 PF06908 DUF1273: Protein of u 26.0 83 0.0018 24.1 3.1 41 89-130 26-66 (177)
58 PF04060 FeS: Putative Fe-S cl 25.3 59 0.0013 18.4 1.7 15 114-128 11-25 (35)
59 PRK14700 recombination factor 24.3 1.2E+02 0.0026 25.4 4.0 24 67-90 175-200 (300)
60 PF14338 Mrr_N: Mrr N-terminal 24.3 71 0.0015 21.3 2.2 28 95-129 6-33 (92)
61 TIGR00651 pta phosphate acetyl 24.2 52 0.0011 27.2 1.8 25 13-37 243-269 (303)
62 PRK13660 hypothetical protein; 23.6 1.4E+02 0.0029 23.2 3.9 41 89-130 26-66 (182)
63 PRK00050 16S rRNA m(4)C1402 me 23.4 1.9E+02 0.0041 24.0 5.0 43 78-128 144-186 (296)
64 PF01795 Methyltransf_5: MraW 23.2 1.1E+02 0.0025 25.6 3.7 44 78-129 147-190 (310)
65 COG4779 FepG ABC-type enteroba 23.1 24 0.00052 29.9 -0.3 26 42-67 85-112 (346)
66 COG0275 Predicted S-adenosylme 22.6 2.4E+02 0.0052 23.9 5.5 44 77-128 149-192 (314)
67 PF12002 MgsA_C: MgsA AAA+ ATP 22.5 68 0.0015 24.6 2.1 24 67-90 37-62 (168)
68 KOG2865|consensus 22.4 52 0.0011 28.2 1.5 65 62-128 213-292 (391)
69 cd02071 MM_CoA_mut_B12_BD meth 20.6 1.3E+02 0.0028 20.9 3.1 27 101-127 22-48 (122)
70 PF10798 YmgB: Biofilm develop 20.5 2.4E+02 0.0053 17.9 4.2 33 89-129 2-34 (61)
71 TIGR01501 MthylAspMutase methy 20.3 1.3E+02 0.0028 22.1 3.1 28 100-127 23-50 (134)
No 1
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-56 Score=367.02 Aligned_cols=125 Identities=33% Similarity=0.471 Sum_probs=121.1
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCC--cceeccCCCCccccccCCcccChHHHHHHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPE--CVVFEPGARHTYSEAVGKNVANPTAMLLCSTK 80 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~--~~~fEp~h~GsapdiaGk~~ANP~a~ils~am 80 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|++ ++||||+| ||||||||||||||+|+|||++|
T Consensus 218 am~lV~~P~~FDViVt~NlFGDILSD~aa~l~GslGl~PSAnig~~~~~~lfEPvH-GSAPDIAGkgiANPiA~IlS~aM 296 (348)
T COG0473 218 AMQLVRNPEQFDVIVTSNLFGDILSDEAAALTGSLGLAPSANLGDERGPALFEPVH-GSAPDIAGKGIANPIATILSAAM 296 (348)
T ss_pred HHHHhhCccccCEEEEccchhHHHHhHHHHhcCccccCccCccCCCCCCceeecCC-CCcccccCCCccChHHHHHHHHH
Confidence 599999999999999999999999999 99999999999999997 99999999 99999999999999999999999
Q ss_pred HhhhcCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhcC
Q psy9338 81 MLSHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANLK 130 (130)
Q Consensus 81 mL~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l~ 130 (130)
||+|+|..++|++|++||+++++++++||+||||+.+|.||+++|+++|+
T Consensus 297 ML~~~g~~~~A~~Ie~Av~~vl~~~g~~T~Dlgg~~~T~e~~d~I~~~l~ 346 (348)
T COG0473 297 MLRHLGEKEAADAIENAVEKVLAEGGIRTPDLGGNATTSEVGDAIAKALA 346 (348)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHcCCCCCcccCCCccHHHHHHHHHHHHh
Confidence 99999999999999999999999744899999999999999999999874
No 2
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=9.8e-55 Score=360.46 Aligned_cols=125 Identities=43% Similarity=0.644 Sum_probs=122.2
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|+++++|||+||||||||+|||+|||+|+|+|++|||
T Consensus 207 ~~~lv~~P~~fdViVt~NlfGDILSDlaa~l~GslGl~pSanig~~~a~fEp~~hGSApdiaGk~iaNP~a~Ils~ammL 286 (333)
T TIGR00175 207 CMQLVSRPSQFDVMVMPNLYGNILSNLGAGLVGGPGLVPGANIGRDYAVFEPGVRHTGPDIAGQNIANPTALILSSVMML 286 (333)
T ss_pred HHHHhcCcccccEEEEccccchhhhHHHHHhcCCcccCceeEEcCCCceEeccCCCCchhhCCCCccChHHHHHHHHHHH
Confidence 499999999999999999999999999 999999999999999999999998889999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhc
Q psy9338 83 SHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANL 129 (130)
Q Consensus 83 ~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l 129 (130)
+|||++++|++|++||.+++++|+++|+|+||++||+||+++|+++|
T Consensus 287 ~~lG~~~~a~~i~~Av~~~l~~G~~~T~DlGG~~~T~e~~~ai~~~l 333 (333)
T TIGR00175 287 NHLGLKEHADRIQKAVLSTIAEGKNRTKDLGGTATTSDFTEAVIKRL 333 (333)
T ss_pred HHcCCHHHHHHHHHHHHHHHHcCCccChhcCCCcCHHHHHHHHHhhC
Confidence 99999999999999999999999889999999999999999999875
No 3
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-54 Score=359.72 Aligned_cols=124 Identities=33% Similarity=0.518 Sum_probs=121.2
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+||||++|++||||||+|||||||||+ +++||+|++||+|+|+++++|||+| ||||||||||+|||+|+|||++|||
T Consensus 209 ~~~lv~~P~~fdVivt~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~H-GSAPdIAGk~iANP~a~IlS~amML 287 (334)
T PRK08997 209 CMQLVMNPEQFDVIVTTNLFGDILSDLCAGLVGGLGMAPGANIGRDAAIFEAVH-GSAPDIAGKNLANPTSVILAAIQML 287 (334)
T ss_pred HHHHhhCcccCcEEEEcCcccchhhHHHHHhcCCCCcCcceeECCCceEEECCC-CchhhhCCCCccCcHHHHHHHHHHH
Confidence 389999999999999999999999999 9999999999999999999999999 9999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhc
Q psy9338 83 SHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANL 129 (130)
Q Consensus 83 ~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l 129 (130)
+|||++++|++|++||++++++|+.+|+|+||+++|+||+++|+++|
T Consensus 288 ~~lG~~~~A~~i~~AV~~vl~~G~~~T~DlGG~a~T~e~~~av~~~l 334 (334)
T PRK08997 288 EYLGMPDKAERIRKAIVAVIEAGDRTTRDLGGTHGTTDFTQAVIDRL 334 (334)
T ss_pred HHcCChhHHHHHHHHHHHHHHcCCccCcccCCCcCHHHHHHHHHhhC
Confidence 99999999999999999999999778999999999999999999875
No 4
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=3.5e-54 Score=359.83 Aligned_cols=126 Identities=39% Similarity=0.562 Sum_probs=122.7
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCC-CCcc--ccccCCcccChHHHHHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGA-RHTY--SEAVGKNVANPTAMLLCST 79 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h-~Gsa--pdiaGk~~ANP~a~ils~a 79 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|++++||||+| |||| |||||||+|||+|+|+|++
T Consensus 230 ~~~Lv~~P~~fDViVt~NlfGDILSDlaa~l~GglGl~pSanig~~~a~FEpvh~hGSA~~PdIAGk~iANP~a~IlS~a 309 (360)
T PLN00123 230 CMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNEKLVEQKKANPVALLLSSA 309 (360)
T ss_pred HHHHhhCcccCcEEEEcCcccchhhhHHHHhcCCcCccceEeeCCCceEEEecccCCCcCCccccCCCccChHHHHHHHH
Confidence 499999999999999999999999999 9999999999999999999999987 6999 9999999999999999999
Q ss_pred HHhhhcCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhcC
Q psy9338 80 KMLSHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANLK 130 (130)
Q Consensus 80 mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l~ 130 (130)
|||+|||++++|++|++||++++++|+++|+||||++||+||+++|+++|+
T Consensus 310 mML~~lG~~~~A~~I~~AV~~~l~~G~~~T~DlGG~~sT~e~~~ai~~~l~ 360 (360)
T PLN00123 310 MMLRHLQFPSFADRLETAVKRVIAEGKYRTKDLGGSSTTQEVVDAVIANLD 360 (360)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHcCCccCcccCCCcCHHHHHHHHHHhhC
Confidence 999999999999999999999999998899999999999999999999875
No 5
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=4.5e-54 Score=356.12 Aligned_cols=122 Identities=29% Similarity=0.408 Sum_probs=120.2
Q ss_pred chhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHhh
Q psy9338 6 LDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLS 83 (130)
Q Consensus 6 ~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL~ 83 (130)
||||++|++||||||+|||||||||+ +++||+||+||+|+|++++||||+| ||||||+|||+|||+|+|||++|||+
T Consensus 207 ~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~psanig~~~a~FEp~H-GSAPdiAGk~iANP~a~IlS~ammL~ 285 (330)
T PRK14025 207 MYIITRPQTFDVVVTSNLFGDILSDGAAGLVGGLGLAPSANIGDKYGLFEPVH-GSAPDIAGKGIANPTATILTAVLMLR 285 (330)
T ss_pred HHHhcCcccCcEEEEcCcccchhhHHHHHhcCCCCcccceeeCCCcceeEcCC-CCchhhCCCCCcCcHHHHHHHHHHHH
Confidence 89999999999999999999999999 9999999999999999999999999 99999999999999999999999999
Q ss_pred hcCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhc
Q psy9338 84 HVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANL 129 (130)
Q Consensus 84 ~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l 129 (130)
|||++++|++|++||++++++| ++|+||||++||+||+++|+++|
T Consensus 286 ~lG~~~~A~~I~~Av~~vl~~g-~~T~DlGG~~~T~e~~~av~~~~ 330 (330)
T PRK14025 286 HLGENEEADKVEKALEEVLALG-LTTPDLGGNLSTMEMAEEVAKRV 330 (330)
T ss_pred HcCCHHHHHHHHHHHHHHHHcC-CCCcccCCCcCHHHHHHHHHHhC
Confidence 9999999999999999999999 89999999999999999999875
No 6
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=8.4e-54 Score=357.03 Aligned_cols=124 Identities=24% Similarity=0.422 Sum_probs=119.9
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCC--c-ceeccCCCCccccccCCcccChHHHHHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPE--C-VVFEPGARHTYSEAVGKNVANPTAMLLCST 79 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~--~-~~fEp~h~GsapdiaGk~~ANP~a~ils~a 79 (130)
+||||++|++||||||+|||||||||+ +++||+|++||+|+|++ + +||||+| ||||||||||+|||+|+|||++
T Consensus 222 ~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GslGl~pSanig~~~~~~alFEp~H-GSAPdiAGk~iANP~a~IlS~a 300 (352)
T PRK08194 222 AAFFVTRPEEFDVIVASNLFGDILTDIGAAIMGSIGIAPAANINVNGKYPSMFEPVH-GSAPDIAGKGIANPIGQIWTAK 300 (352)
T ss_pred HHHHhhChhhCcEEEEccchHHHHhHHHHHhcCCccccceeeecCCCCcceEEECCC-CCchhhCCCCcCCcHHHHHHHH
Confidence 499999999999999999999999999 99999999999999964 4 8999999 9999999999999999999999
Q ss_pred HHhhhcCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhcC
Q psy9338 80 KMLSHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANLK 130 (130)
Q Consensus 80 mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l~ 130 (130)
|||+|||++++|++|++||++++++| ++|+||||+++|+||+++|+++|+
T Consensus 301 mML~~lg~~~~A~~i~~Av~~~l~~g-~~T~DlGG~~~T~e~~~ai~~~l~ 350 (352)
T PRK08194 301 LMLDHFGEEELGSHLLDVIEDVTEDG-IKTPDIGGRATTDEVTDEIISRLK 350 (352)
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHcC-CCcCcCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999999999999999 899999999999999999999873
No 7
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=1.4e-53 Score=357.59 Aligned_cols=124 Identities=32% Similarity=0.472 Sum_probs=121.2
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCC-cceeccCCCCccccccCCcccChHHHHHHHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPE-CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKM 81 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~-~~~fEp~h~GsapdiaGk~~ANP~a~ils~amm 81 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|++ ++||||+| ||||||+|||+|||+|+|||++||
T Consensus 246 a~~Lv~~P~~fDViVt~NLfGDILSDlaa~l~GglGlapSanig~~~~a~FEpvH-GSAPdIAGk~iANP~A~IlS~amM 324 (372)
T PLN00118 246 CMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGENGLALAEAVH-GSAPDIAGKNLANPTALLLSAVMM 324 (372)
T ss_pred HHHhccCcccCcEEEEcCcccchhhHHHHHhcCCcccCcceeecCCCCeEEECCC-CChhhhCCCCCcCcHHHHHHHHHH
Confidence 499999999999999999999999999 99999999999999987 79999999 999999999999999999999999
Q ss_pred hhhcCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhc
Q psy9338 82 LSHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANL 129 (130)
Q Consensus 82 L~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l 129 (130)
|+|||++++|++|++||.+++++|+++|+||||+++|+||+|+|+++|
T Consensus 325 L~~lG~~~~A~~I~~Av~~~l~~G~~~T~DlGG~~sT~e~~dav~~~l 372 (372)
T PLN00118 325 LRHLKLNEQAEQIHNAILNTIAEGKYRTADLGGSSTTTDFTKAICDHL 372 (372)
T ss_pred HHHcCChHHHHHHHHHHHHHHHcCCccCcccCCCcCHHHHHHHHHhhC
Confidence 999999999999999999999999889999999999999999999875
No 8
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=1.5e-53 Score=355.53 Aligned_cols=123 Identities=32% Similarity=0.446 Sum_probs=119.2
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCC-c--ceeccCCCCccccccCCcccChHHHHHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPE-C--VVFEPGARHTYSEAVGKNVANPTAMLLCST 79 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~-~--~~fEp~h~GsapdiaGk~~ANP~a~ils~a 79 (130)
+||||++|++||||||+|||||||||+ +++||+|++||+|+|++ . +||||+| ||||||||||+|||+|+|||++
T Consensus 225 ~~~lv~~P~~fDVivt~NlfGDILSD~aa~l~GglGl~psanig~~~~~~a~fEp~H-GSAPdiAGk~iANP~a~Ils~a 303 (352)
T TIGR02089 225 AARFVLKPETFDVIVASNLFGDILSDLGAALMGSLGVAPSANINPEGKFPSMFEPVH-GSAPDIAGKGIANPIGAIWTAA 303 (352)
T ss_pred HHHHhcChhhCcEEEecccchhhhhHHHHHhcCCccccceEEecCCCCcceeeecCC-CCchhhcCCCccCcHHHHHHHH
Confidence 499999999999999999999999999 99999999999999964 3 8999999 9999999999999999999999
Q ss_pred HHhhhcCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhc
Q psy9338 80 KMLSHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANL 129 (130)
Q Consensus 80 mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l 129 (130)
|||+|||++++|++|++||++++++| ++|+|+||++||+||+|+|+++|
T Consensus 304 mML~~lg~~~~A~~I~~Av~~~l~~g-~~T~DlGG~~sT~e~~~ai~~~l 352 (352)
T TIGR02089 304 MMLEHLGEKEAGAKIMDAIERVTAAG-ILTPDVGGKATTSEVTEAVCNAL 352 (352)
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHcC-CccCCCCCCcCHHHHHHHHHhhC
Confidence 99999999999999999999999999 89999999999999999999875
No 9
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=4.5e-53 Score=357.70 Aligned_cols=124 Identities=25% Similarity=0.355 Sum_probs=119.8
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCC-cceeccCCCCccccccCCcccChHHHHHHHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPE-CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKM 81 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~-~~~fEp~h~GsapdiaGk~~ANP~a~ils~amm 81 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|++ ++||||+| ||||||||||+|||+|+|||++||
T Consensus 271 a~~LV~~P~~FDVIVt~NLfGDILSDlaa~l~GglGlaPSanig~~~~a~FEpvH-GSAPdIAGk~iANP~A~ILS~amM 349 (409)
T PLN02329 271 AMQLIRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIH-GSAPDIAGQDKANPLATILSAAML 349 (409)
T ss_pred HHHHhcCchhCCEEEEcCcccccccHHHHHhcCCcccCceeecCCCCceeeeccC-CCchhhcCCcccChHHHHHHHHHH
Confidence 499999999999999999999999999 99999999999999987 69999999 999999999999999999999999
Q ss_pred hhh-cCcHHHHHHHHHHHHHHHHcCCcccCCC---CCC-CCHHHHHHHHHHhcC
Q psy9338 82 LSH-VNLQYYGDMIRNAVNRVLKAGKVRTKDL---GGQ-STTQEYTYAVIANLK 130 (130)
Q Consensus 82 L~~-lg~~~~A~~i~~Av~~~l~~g~~~T~Dl---gG~-~tT~e~~~avi~~l~ 130 (130)
|+| ||++++|++|++||++++++| ++|+|| ||+ ++|+||+|+|+++|+
T Consensus 350 L~~~Lg~~~~A~~I~~AV~~vl~~g-~~T~Dl~~~Gg~~~~T~e~~daIi~~l~ 402 (409)
T PLN02329 350 LKYGLGEEKAAKRIEDAVVDALNKG-FRTGDIYSPGNKLVGCKEMGEEVLKSVD 402 (409)
T ss_pred HhhhCCCHHHHHHHHHHHHHHHHcC-CcCcccccCCCCccCHHHHHHHHHHHHH
Confidence 999 999999999999999999998 889999 776 899999999999874
No 10
>KOG0785|consensus
Probab=100.00 E-value=1.8e-52 Score=342.63 Aligned_cols=123 Identities=37% Similarity=0.545 Sum_probs=121.3
Q ss_pred chhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHhh
Q psy9338 6 LDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLS 83 (130)
Q Consensus 6 ~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL~ 83 (130)
++|+++|..|||+|+||||||||||+ +|+||+|+.||+|+|++.++||++| ||||||||||+|||+|++||++||||
T Consensus 241 l~lv~~P~~~DVlV~PNLYGDIlSD~~agLvGgLGltPS~NiG~g~~~~e~vH-GsAPDIAGkdlANPtAlllS~vmMLr 319 (365)
T KOG0785|consen 241 LKLVRNPSCFDVLVMPNLYGDILSDLCAGLVGGLGLTPSANIGDGIVIFEAVH-GSAPDIAGKDLANPTALLLSAVMMLR 319 (365)
T ss_pred HHHhcCchhceEEeccchhHHHHHHHHHHhccCcccCCCcccCCCeeeeeccc-CCCcccccCCcCCcHHHHHHHHHHHH
Confidence 79999999999999999999999999 9999999999999999999999999 99999999999999999999999999
Q ss_pred hcCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhc
Q psy9338 84 HVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANL 129 (130)
Q Consensus 84 ~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l 129 (130)
|+|++++|++|++||.+++++|++||+||||+++|+||+++|+++|
T Consensus 320 hm~l~~~A~~I~~Av~~ti~eg~~rT~DLGGka~~seft~aVc~~l 365 (365)
T KOG0785|consen 320 HMGLNDQADQIESAVFKTIAEGKIRTPDLGGKATTSEFTDAVCDRL 365 (365)
T ss_pred HcCchhHHHHHHHHHHHHHhccCccCcccCCCccchHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999876
No 11
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=3.2e-52 Score=353.10 Aligned_cols=124 Identities=27% Similarity=0.314 Sum_probs=119.5
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|++++||||+| ||||||||||+|||+|+|||++|||
T Consensus 279 ~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~GglGl~pSanig~~~alFEpvH-GSAPdiAGk~iANP~a~IlS~amML 357 (412)
T PRK06451 279 FQQIIIRPDEYDIILAPNVNGDYISDAAGALVGNIGMLGGANIGDTGGMFEAIH-GTAPKYAGKNVANPTGIIKGGELML 357 (412)
T ss_pred HHHHhcCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCCCceeECCC-CCccccCCCCCcCcHHHHHHHHHHH
Confidence 399999999999999999999999999 9999999999999999999999999 9999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHHHHHHHHcCCcccCCC----CCC-CCHHHHHHHHHHhcC
Q psy9338 83 SHVNLQYYGDMIRNAVNRVLKAGKVRTKDL----GGQ-STTQEYTYAVIANLK 130 (130)
Q Consensus 83 ~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dl----gG~-~tT~e~~~avi~~l~ 130 (130)
||||++++|++|++||.+++++| .+|+|| ||+ ++|+||+|+|+++|+
T Consensus 358 ~~lg~~~~A~~I~~Av~~vl~~G-~~T~Dl~~~~gg~~~~T~e~~daI~~~l~ 409 (412)
T PRK06451 358 RFMGWDKAADLIDKAIMESIKQK-KVTQDLARFMGVRALSTTEYTDELISIID 409 (412)
T ss_pred HHcCCHHHHHHHHHHHHHHHHcC-CcCccccccCCCCccCHHHHHHHHHHHHh
Confidence 99999999999999999999999 789999 555 799999999999873
No 12
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=3.7e-52 Score=346.87 Aligned_cols=123 Identities=31% Similarity=0.396 Sum_probs=119.2
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCC-CcceeccCCCCccccccCCcccChHHHHHHHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSP-ECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKM 81 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~-~~~~fEp~h~GsapdiaGk~~ANP~a~ils~amm 81 (130)
+||||++|++||||||+|||||||||+ +++||+|++||+|+|+ +++||||+| ||||||||||+|||+|+|||++||
T Consensus 223 ~~~Lv~~P~~fDViv~~NlfGDILSDlaa~l~GglGlapSanig~~~~a~FEp~H-GSAPdiAGk~iANP~a~IlS~amM 301 (349)
T TIGR00169 223 AMQLVKSPTQFDVVVTGNIFGDILSDEASVIPGSLGMLPSASLGSDGFGLFEPVH-GSAPDIAGKGIANPIAQILSAAMM 301 (349)
T ss_pred HHHHHhCccCceEEEEcCcccchhhHHHHHhcCCCCCCceEEECCCCCEEEECCC-CChhHhcCCCCCChHHHHHHHHHH
Confidence 499999999999999999999999999 9999999999999995 589999999 999999999999999999999999
Q ss_pred hhh-cCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhc
Q psy9338 82 LSH-VNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANL 129 (130)
Q Consensus 82 L~~-lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l 129 (130)
|+| ||++++|++|++||++++++| ++|+||||+++|+||+++|++.|
T Consensus 302 L~~~lg~~~~a~~i~~Av~~~l~~g-~~T~DlgG~~~t~e~t~av~~~~ 349 (349)
T TIGR00169 302 LRYSFNLEEAADAIEAAVKKVLAEG-YRTPDLGSSATTEVGTAEMGEEL 349 (349)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHcC-CCccccCCCcchHHHHHHHHhcC
Confidence 999 899999999999999999998 89999999999999999999865
No 13
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=3.6e-52 Score=352.71 Aligned_cols=123 Identities=21% Similarity=0.325 Sum_probs=118.8
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|++++||||+| ||||||+|||+|||+|+|||++|||
T Consensus 279 ~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGlapSanig~~~a~FEpvH-GSAPdiAGk~iANP~a~IlS~amML 357 (409)
T PRK07006 279 LQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAPGANINDGHAIFEATH-GTAPKYAGLDKVNPGSVILSAEMML 357 (409)
T ss_pred HHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcccceeCCCceEEECCC-CcchhhCCCCCcChHHHHHHHHHHH
Confidence 389999999999999999999999999 9999999999999999999999999 9999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHHHHHHHHcCCcccCCC-----CCC-CCHHHHHHHHHHhc
Q psy9338 83 SHVNLQYYGDMIRNAVNRVLKAGKVRTKDL-----GGQ-STTQEYTYAVIANL 129 (130)
Q Consensus 83 ~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dl-----gG~-~tT~e~~~avi~~l 129 (130)
+|||++++|++|++||.+++++| ++|+|| ||+ ++|+||+|+|+++|
T Consensus 358 ~~lG~~~~A~~Ie~Av~~~l~~G-~~T~Dl~~~~~gg~~~~T~e~~daI~~~l 409 (409)
T PRK07006 358 RHMGWTEAADLIIKSMEKTIASK-TVTYDFARLMEGATEVKCSEFGDALIKNM 409 (409)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcC-CccccccccCCCCcccCHHHHHHHHHhhC
Confidence 99999999999999999999999 899999 445 79999999999876
No 14
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=7.5e-52 Score=354.95 Aligned_cols=123 Identities=27% Similarity=0.398 Sum_probs=119.8
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|++++||||+| ||||||||||+|||+|+|+|++|||
T Consensus 207 a~~Lv~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSaNiG~~~amFEpvH-GSAPdIAGk~iANP~a~IlSaamML 285 (473)
T TIGR02924 207 MARLATNPENFDVIVTPNLYGDILSDVAAEISGSVGLAGSANIGEEYAMFEAVH-GSAPDIAGQNIANPSGLLNAAIQML 285 (473)
T ss_pred HHHHhhCcccceEEEEccccchhhhHHHHHhcCCcCcccceecCCCcceeecCC-CchhhhCCCCccChHHHHHHHHHHH
Confidence 399999999999999999999999999 9999999999999999999999999 9999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHHHHHHHHcCCcccCCCC------CCCCHHHHHHHHHHhc
Q psy9338 83 SHVNLQYYGDMIRNAVNRVLKAGKVRTKDLG------GQSTTQEYTYAVIANL 129 (130)
Q Consensus 83 ~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlg------G~~tT~e~~~avi~~l 129 (130)
+|||++++|++|++||.+++++| ++|+|++ |+++|+||+++|+++|
T Consensus 286 ~hLG~~~~A~~I~~AV~~vl~~G-~~T~Dl~~~~~~gg~~sT~e~~daVi~~l 337 (473)
T TIGR02924 286 VHIGQSDIAQLIYNAWLKTLEDG-VHTADIYNEKTSKQKVGTKEFAEAVTANL 337 (473)
T ss_pred HHcCCHHHHHHHHHHHHHHHHcC-CcCccccccccCCCCcCHHHHHHHHHHHh
Confidence 99999999999999999999999 8999994 6899999999999987
No 15
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=7e-52 Score=353.55 Aligned_cols=122 Identities=21% Similarity=0.339 Sum_probs=118.8
Q ss_pred chhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHhh
Q psy9338 6 LDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLS 83 (130)
Q Consensus 6 ~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL~ 83 (130)
||||++|++||||||+|||||||||+ +++||+||+||+|+|++++||||+| ||||||||||+|||+|+|||++|||+
T Consensus 344 ~~lv~~P~~FDVIVt~NLfGDILSDlaA~lvGglGlaPSANiG~~~a~FEpvH-GSAPdIAGk~iANP~A~ILS~aMML~ 422 (474)
T PRK07362 344 QQIQTRPQEYSILATLNLNGDYISDAAAAIVGGLGMAPGANIGDNAAIFEATH-GTAPKHAGLDRINPGSVILSGVMMLE 422 (474)
T ss_pred HHHHhChhhCCEEEEccccchhhhHHHHHhcCCccccceeeeCCCceeeecCC-CCchhhcCCCCcCcHHHHHHHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999999 99999999999999999999999999
Q ss_pred hcCcHHHHHHHHHHHHHHHHcCCcccCCCC-------CCCCHHHHHHHHHHhc
Q psy9338 84 HVNLQYYGDMIRNAVNRVLKAGKVRTKDLG-------GQSTTQEYTYAVIANL 129 (130)
Q Consensus 84 ~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlg-------G~~tT~e~~~avi~~l 129 (130)
|||++++|++|++||++++++| .+|+||| |.+||+||+++|+++.
T Consensus 423 ~LG~~~~A~~I~~AV~~vl~~g-~~T~Dlg~~~~~~~~~~sT~E~~~aIi~~~ 474 (474)
T PRK07362 423 YLGWQEAADLITKGLSAAIANK-QVTYDLARLMEPPVDPLSCSEFAEAIISHF 474 (474)
T ss_pred HcCCHHHHHHHHHHHHHHHHcC-CcccCCCCccccCCCCcCHHHHHHHHHhcC
Confidence 9999999999999999999999 7899999 5789999999999863
No 16
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=7.7e-52 Score=351.37 Aligned_cols=122 Identities=23% Similarity=0.401 Sum_probs=118.6
Q ss_pred chhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHhh
Q psy9338 6 LDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLS 83 (130)
Q Consensus 6 ~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL~ 83 (130)
||||++|++||||||+|||||||||+ +++||+||+||+|+|++++||||+| ||||||||||+|||+|+|||++|||+
T Consensus 287 ~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GslGlapSanig~~~alFEp~H-GSAPdiAGk~iANP~a~IlS~amML~ 365 (416)
T TIGR00183 287 QQILTRPDEYDVIATMNLNGDYISDALAAQVGGIGIAPGANIGDEIGIFEATH-GTAPKYAGQDKVNPGSIILSGEMMLE 365 (416)
T ss_pred HHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCCceEEECCC-CCchhhcCCCCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999999 99999999999999999999999999
Q ss_pred hcCcHHHHHHHHHHHHHHHHcCCcccCCC----CC-C-CCHHHHHHHHHHhc
Q psy9338 84 HVNLQYYGDMIRNAVNRVLKAGKVRTKDL----GG-Q-STTQEYTYAVIANL 129 (130)
Q Consensus 84 ~lg~~~~A~~i~~Av~~~l~~g~~~T~Dl----gG-~-~tT~e~~~avi~~l 129 (130)
|||++++|++|++||.+++++| ++|+|| || + ++|+||+++|+++|
T Consensus 366 ~lg~~~~A~~Ie~AV~~~l~~G-~~T~Dl~~~~gg~~~~~T~e~~daI~~~l 416 (416)
T TIGR00183 366 HMGWKEAADLIKKAMEKAIASK-IVTYDFARLMDGAKEVKCSEFAEAIIENM 416 (416)
T ss_pred HcCCHHHHHHHHHHHHHHHHcC-CcccccccccCCCcccCHHHHHHHHHhhC
Confidence 9999999999999999999999 899999 55 4 79999999999876
No 17
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.7e-51 Score=353.61 Aligned_cols=123 Identities=27% Similarity=0.417 Sum_probs=119.5
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|++++||||+| ||||||||||+|||+|+|+|++|||
T Consensus 211 a~~Lv~~P~~FDVIVt~NLfGDILSDlaa~l~GslGlapSanig~~~amFEpvH-GSAPdIAGk~iANP~a~IlSaamML 289 (482)
T PRK09222 211 AARLATNPENFDVIVTPNLYGDILSDIAAEISGSVGLAGSANIGEEYAMFEAVH-GSAPDIAGKNIANPSGLLNAAVMML 289 (482)
T ss_pred HHHHhcCcccceEEEEcccccchhhHHHHHhcCCcccccceecCCCceeeECCC-CCchhhcCCCccCcHHHHHHHHHHH
Confidence 499999999999999999999999999 9999999999999999999999999 9999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHHHHHHHHcCCcccCCCCC------CCCHHHHHHHHHHhc
Q psy9338 83 SHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGG------QSTTQEYTYAVIANL 129 (130)
Q Consensus 83 ~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG------~~tT~e~~~avi~~l 129 (130)
+|||++++|++|++||.+++++| ++|+|+|| +++|+||+++|+++|
T Consensus 290 ~hlG~~~~A~~I~~Av~~tl~~G-~~T~Dl~g~~~~~~~~~T~e~~~aVi~~l 341 (482)
T PRK09222 290 VHIGQFDIAELIENAWLKTLEDG-IHTADIYNEGVSKKKVGTKEFAEAVIENL 341 (482)
T ss_pred HHcCChHHHHHHHHHHHHHHHcC-CCCcccCCCCCCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999999 89999955 589999999999987
No 18
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=5.3e-51 Score=340.84 Aligned_cols=124 Identities=31% Similarity=0.450 Sum_probs=120.4
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCC-cceeccCCCCccccccCCcccChHHHHHHHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPE-CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKM 81 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~-~~~fEp~h~GsapdiaGk~~ANP~a~ils~amm 81 (130)
+||||++|++||||||+|||||||||+ +++||+|++||+|+|++ +++|||+| ||||||+|||+|||+|+|||++||
T Consensus 226 ~~~lv~~P~~fDViv~~NlfGDIlSDlaa~l~GglGl~psanig~~~~a~FEp~H-GSApdiAGk~~aNP~a~Ils~amm 304 (358)
T PRK00772 226 AMQLVRNPKQFDVIVTENLFGDILSDEAAMLTGSLGMLPSASLGESGPGLYEPIH-GSAPDIAGKGIANPIATILSAAMM 304 (358)
T ss_pred HHHHhhCcccCeEEeecCcccccccHHHHHhcCCCCCCcceEeCCCCceeeecCC-CchhhhcCCCCcCCHHHHHHHHHH
Confidence 399999999999999999999999999 99999999999999976 79999999 999999999999999999999999
Q ss_pred hhh-cCcHHHHHHHHHHHHHHHHcCCcccCCC---CCCCCHHHHHHHHHHhcC
Q psy9338 82 LSH-VNLQYYGDMIRNAVNRVLKAGKVRTKDL---GGQSTTQEYTYAVIANLK 130 (130)
Q Consensus 82 L~~-lg~~~~A~~i~~Av~~~l~~g~~~T~Dl---gG~~tT~e~~~avi~~l~ 130 (130)
|+| ||++++|++|++||++++++| ++|+|| ||+++|+||+|+|+++|+
T Consensus 305 L~~~lg~~~~a~~i~~Av~~~l~~g-~~T~Dl~~~gg~~~T~e~~~av~~~l~ 356 (358)
T PRK00772 305 LRYSLGLEEAADAIEAAVEKVLAQG-YRTADIAEGGGKVSTSEMGDAILAALA 356 (358)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHcC-CcCcccccCCCCcCHHHHHHHHHHHhh
Confidence 999 999999999999999999999 899999 899999999999999874
No 19
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=5.1e-50 Score=333.48 Aligned_cols=118 Identities=24% Similarity=0.318 Sum_probs=113.5
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCC-c--ceeccCCCCccccccCCcccChHHHHHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPE-C--VVFEPGARHTYSEAVGKNVANPTAMLLCST 79 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~-~--~~fEp~h~GsapdiaGk~~ANP~a~ils~a 79 (130)
+||||++|++||||||+|||||||||+ +++||+|++||+|+|++ . +||||+| ||||||||||+|||+|+|||++
T Consensus 222 ~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pSanig~~g~~~a~FEp~H-GSAPdiAGk~iANP~a~IlS~a 300 (344)
T PRK03437 222 TIFMVTDPSRFDVIVTDNLFGDIITDLAAAVTGGIGLAASGNINPTGTNPSMFEPVH-GSAPDIAGQGIADPTAAILSVA 300 (344)
T ss_pred HHHHhcCcccCcEEEEcccchhhhhHHHHHhcCCccccceeeecCCCCcceeEecCC-CCchhhcCCCccChHHHHHHHH
Confidence 499999999999999999999999999 99999999999999964 3 8999999 9999999999999999999999
Q ss_pred HHhhhcCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhc
Q psy9338 80 KMLSHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANL 129 (130)
Q Consensus 80 mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l 129 (130)
|||+|||++++|++|++||++++++| +||++||+||+++|+++|
T Consensus 301 mML~~lg~~~~a~~I~~Av~~~l~~g------~gg~~~T~e~~~ai~~~l 344 (344)
T PRK03437 301 LLLDHLGEEDAAARIEAAVEADLAER------GKMGRSTAEVGDRIAARL 344 (344)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhc------CCCCcCHHHHHHHHHhhC
Confidence 99999999999999999999999998 489999999999999876
No 20
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=5.4e-50 Score=333.29 Aligned_cols=119 Identities=36% Similarity=0.570 Sum_probs=115.4
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCC-CCcceeccCCCCccccccCCcccChHHHHHHHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWS-PECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKM 81 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig-~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~amm 81 (130)
+||||++|++||||||+|||||||||+ +++||+|++||+|+| +.+++|||+| ||||||+||++|||+|+|||++||
T Consensus 222 ~~~Lv~~P~~fdViv~~Nl~GDIlSDl~a~l~G~lGl~psanig~~~~a~fEp~H-GSApdiaGk~~aNP~a~Ils~a~m 300 (348)
T PF00180_consen 222 AMQLVKNPEQFDVIVTPNLFGDILSDLAAGLVGGLGLAPSANIGPDGHAMFEPVH-GSAPDIAGKGIANPIAMILSAAMM 300 (348)
T ss_dssp HHHHHHSGGGESEEEEEHHHHHHHHHHHHHHHTSGGGEEEEEEETSSEEEEEESS-TTTGGGTTSSHS-THHHHHHHHHH
T ss_pred hheeecCCcceeEEeecchhHHHHHHHhhhcCCChhhhhhhccCccccccccccc-cccccccCCcccCcHHHHHHHHHH
Confidence 499999999999999999999999999 999999999999999 7899999999 999999999999999999999999
Q ss_pred hhh-cCcHHHHHHHHHHHHHHHHcCCcccCCCCCCC----CHHHHHHHH
Q psy9338 82 LSH-VNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQS----TTQEYTYAV 125 (130)
Q Consensus 82 L~~-lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~----tT~e~~~av 125 (130)
|+| +|++++|++|++||.+++++| ++|+||||+. +|+||+|+|
T Consensus 301 L~~~lg~~~~a~~i~~Av~~~l~~g-~~T~Dlgg~~~~~~~T~e~~daV 348 (348)
T PF00180_consen 301 LEHSLGLPEAADAIEKAVEKVLEEG-IRTPDLGGSATTAVSTEEFGDAV 348 (348)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHTT-EEBGGGHTTTCEEBHHHHHHHHH
T ss_pred HHHhcCChHHHHHHHHHHHHHHHcC-CCCccccCCCCCCCCHHHHHhhC
Confidence 999 999999999999999999997 9999999998 999999987
No 21
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=5.9e-49 Score=324.74 Aligned_cols=120 Identities=28% Similarity=0.401 Sum_probs=117.5
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|++++||||.| ||||||+||++|||+|+|+|++|||
T Consensus 201 ~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~~a~fep~h-Gsa~diaG~~~aNp~a~i~A~~~~l 279 (322)
T TIGR02088 201 AMNLVKDPWRFDVIVTTNMFGDILSDLASALAGSLGLAPSANIGDRKALFEPVH-GSAPDIAGKGIANPTAAILSVAMML 279 (322)
T ss_pred HHHHhhCCcCceEEEecCcccchhhHHHHhhcCCCCCCceeEEcCCceEEecCC-CChhHhCCCCCCChHHHHHHHHHHH
Confidence 499999999999999999999999999 9999999999999999999999999 9999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHH
Q psy9338 83 SHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVI 126 (130)
Q Consensus 83 ~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi 126 (130)
+|+|++++|++|++||++++++| .+|+|+||+++|+||+|+|+
T Consensus 280 ~~~g~~~~a~~i~~Av~~~l~~g-~~T~DlgG~~~T~e~~~av~ 322 (322)
T TIGR02088 280 DYLGELEKGKLVWEAVEYYIIEG-KKTPDLGGTAKTKEVGDEIA 322 (322)
T ss_pred HHcCCHHHHHHHHHHHHHHHHcC-CCCcccCCCcCHHHHHHHhC
Confidence 99999999999999999999998 78999999999999999985
No 22
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=3.9e-48 Score=327.07 Aligned_cols=123 Identities=22% Similarity=0.260 Sum_probs=117.1
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCc--ceeccCCCCcccc-----ccCCcc-cChHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPEC--VVFEPGARHTYSE-----AVGKNV-ANPTAM 74 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~--~~fEp~h~Gsapd-----iaGk~~-ANP~a~ 74 (130)
+||||++|++| ||||+|||||||||+ +++||+|++||+|+|+++ +||||+| ||||| |+|||+ |||+|+
T Consensus 253 ~~~lv~~P~~f-Vivt~NlfGDIlSDlaa~l~GglG~apSanig~~~~~a~FEp~H-GSAPD~~~~~IaGk~~~ANP~A~ 330 (402)
T PRK08299 253 VASALKWEGGY-VWACKNYDGDVQSDTVAQGFGSLGLMTSVLMTPDGKTVEAEAAH-GTVTRHYRQHQKGEETSTNPIAS 330 (402)
T ss_pred HHHHHhCcCCc-EEEEeccccchhhhHHHhhcCCcccccceeeCCCCCcEEEecCC-CCCcccccccccCCCCccCHHHH
Confidence 49999999999 999999999999999 999999999999999874 7999999 99999 999997 999999
Q ss_pred HHHHHHHhhhcCc-------HHHHHHHHHHHHHHHHcCCcccCCCC-------CCCCHHHHHHHHHHhcC
Q psy9338 75 LLCSTKMLSHVNL-------QYYGDMIRNAVNRVLKAGKVRTKDLG-------GQSTTQEYTYAVIANLK 130 (130)
Q Consensus 75 ils~ammL~~lg~-------~~~A~~i~~Av~~~l~~g~~~T~Dlg-------G~~tT~e~~~avi~~l~ 130 (130)
|||++|||+|||+ +++|++|++||.+++++| .+|+||| |.+||+||+++|+++|+
T Consensus 331 IlS~amML~~LG~~~~~~~l~~~a~~I~~Av~~~l~~g-~~T~Dlg~~~g~~~g~~tT~e~~daIi~~l~ 399 (402)
T PRK08299 331 IFAWTRGLAHRGKLDGNPELVKFADTLEKVCIETVESG-FMTKDLALLVGPDQKWLTTEEFLDAIDENLE 399 (402)
T ss_pred HHHHHHHHHHhCCccccchHHHHHHHHHHHHHHHHHcC-CcCccchhccCCCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999 889999999999999999 7899995 45999999999999874
No 23
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=2.5e-46 Score=316.68 Aligned_cols=123 Identities=21% Similarity=0.263 Sum_probs=116.7
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCc--ceeccCCCCcccc------ccCCcccChHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPEC--VVFEPGARHTYSE------AVGKNVANPTAM 74 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~--~~fEp~h~Gsapd------iaGk~~ANP~a~ 74 (130)
+||||++|++| ||||+|||||||||+ +++||+|++||+|+|++. ++|||+| ||||| |+|||+|||+|+
T Consensus 257 a~~lv~~P~~f-Viv~~NLfGDIlSDlaA~l~GslGlapSanig~~~~~~~FEp~H-GSApd~~~~~diaGk~iANP~A~ 334 (410)
T PLN00103 257 VAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH-GTVTRHYRVHQKGGETSTNSIAS 334 (410)
T ss_pred HHHHhcCCCCC-EEEEcccchHHHHHHHHHhcCchhhhhccccCCCCCcEEEeCCC-CcCcccchhhhhcCCCccChHHH
Confidence 39999999999 999999999999999 999999999999999874 6999999 99998 899999999999
Q ss_pred HHHHHHHhhhc-------CcHHHHHHHHHHHHHHHHcCCcccCCC-----CCC------CCHHHHHHHHHHhcC
Q psy9338 75 LLCSTKMLSHV-------NLQYYGDMIRNAVNRVLKAGKVRTKDL-----GGQ------STTQEYTYAVIANLK 130 (130)
Q Consensus 75 ils~ammL~~l-------g~~~~A~~i~~Av~~~l~~g~~~T~Dl-----gG~------~tT~e~~~avi~~l~ 130 (130)
|+|++|||+|+ |+.++|++|++||.+++++| .+|+|| ||+ ++|+||+++|+++|+
T Consensus 335 IlS~ammL~~l~~~~~~~g~~~~a~~i~~Av~~~l~~G-~~T~Dl~~~~~gg~~~~~~~~~T~e~~daV~~~l~ 407 (410)
T PLN00103 335 IFAWSRGLAHRAKLDGNARLLDFTEKLEAACVGTVESG-KMTKDLALLIHGPKVSRDQYLNTEEFIDAVAEELK 407 (410)
T ss_pred HHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHcC-CCCcccccccCCCcccCCCCcCHHHHHHHHHHHHH
Confidence 99999999999 89999999999999999999 789999 464 899999999999874
No 24
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-46 Score=315.94 Aligned_cols=123 Identities=22% Similarity=0.274 Sum_probs=116.0
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCc--ceeccCCCCccccc-----cCC-cccChHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPEC--VVFEPGARHTYSEA-----VGK-NVANPTAM 74 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~--~~fEp~h~Gsapdi-----aGk-~~ANP~a~ 74 (130)
+||||++|++| ||||+|||||||||+ +++||+|++||+|+|+++ ++|||+| |||||| +|| ++|||+|+
T Consensus 256 ~m~lv~~P~~f-ViV~~NlfGDIlSDlaA~l~GglGlapSanig~d~~~a~FEp~H-GSApdi~~~~iaGk~~~ANP~A~ 333 (413)
T PTZ00435 256 VAQAIKSEGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAH-GTVTRHYRQHQKGKETSTNSIAS 333 (413)
T ss_pred HHHHhhCCCCe-EEEeecccchhhhHHHHHhcCcccccccceeCCCCCeEEEEcCc-CCccccchhhhcCCCCccChHHH
Confidence 49999999999 999999999999999 999999999999999874 9999999 999998 896 79999999
Q ss_pred HHHHHHHhhhcCc-------HHHHHHHHHHHHHHHHcCCcccCCCC----CC--------CCHHHHHHHHHHhcC
Q psy9338 75 LLCSTKMLSHVNL-------QYYGDMIRNAVNRVLKAGKVRTKDLG----GQ--------STTQEYTYAVIANLK 130 (130)
Q Consensus 75 ils~ammL~~lg~-------~~~A~~i~~Av~~~l~~g~~~T~Dlg----G~--------~tT~e~~~avi~~l~ 130 (130)
|+|++|||+|+|+ .++|++|++||.+++++| ++|+||| |+ ++|+||+++|+++|+
T Consensus 334 Ils~ammL~~lg~~~~~~~~~~~A~~ie~Av~~~i~~g-~~T~Dlg~~~~G~~~~~~~~~~~T~e~~daV~~~L~ 407 (413)
T PTZ00435 334 IFAWTRGLAHRAKLDNNQELVKFCQALERSCIETIEAG-FMTKDLAICVHGSSKVTRSDYLNTEEFIDKVAEKLK 407 (413)
T ss_pred HHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcC-CCccccccccCCCccccCCCCcCHHHHHHHHHHHHH
Confidence 9999999999995 788999999999999998 7899997 74 899999999999873
No 25
>KOG0784|consensus
Probab=100.00 E-value=7.7e-46 Score=306.02 Aligned_cols=125 Identities=51% Similarity=0.746 Sum_probs=122.9
Q ss_pred chhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHhh
Q psy9338 6 LDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLS 83 (130)
Q Consensus 6 ~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL~ 83 (130)
||||++|+||||+|||||||+|+|++ |++||.|+.|++|+|++|++|||..|.+..+++||++|||+|+|+|++||||
T Consensus 247 MQlvs~P~qFDvmv~pnlYgniisNiaaGlvGG~Glv~G~n~G~~yAVFE~g~r~~~~~~~g~~~aNPtA~llss~~MLr 326 (375)
T KOG0784|consen 247 MQLVSRPQQFDVMVMPNLYGNIISNIAAGLVGGAGLVSGANYGDDYAVFEPGARHTGTSIAGKNIANPTAMLLSSVDMLR 326 (375)
T ss_pred HHhhcCchheeeEechHHHHHHHHHHHHHhcCCCCcccccccccceEEecccccccchhhhcccccCcHHHHHHHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999998888889999999999999999999999
Q ss_pred hcCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhcC
Q psy9338 84 HVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANLK 130 (130)
Q Consensus 84 ~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l~ 130 (130)
|||++++|++|++||.+++.+|++||+|+||+.||+||+++||++|+
T Consensus 327 HL~l~~~Ad~i~~Av~~vi~egk~rT~DlGG~~Tt~dvi~avI~~l~ 373 (375)
T KOG0784|consen 327 HLGLPSHADRISTAVKRVIDEGKIRTKDLGGQSTTQDVIDAVIANLR 373 (375)
T ss_pred HcCChHHHHHHHHHHHHHHhcCcccccccCCCcchHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999885
No 26
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=2.9e-45 Score=307.97 Aligned_cols=123 Identities=18% Similarity=0.252 Sum_probs=115.2
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCC---c--ceeccCCCCcccccc-----CCc-ccCh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPE---C--VVFEPGARHTYSEAV-----GKN-VANP 71 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~---~--~~fEp~h~Gsapdia-----Gk~-~ANP 71 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|++ + ++|||+| ||||||+ ||+ +|||
T Consensus 248 ~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~pSanig~d~dg~~~a~fEp~H-GSApdiag~~~~Gk~~~ANP 326 (393)
T PLN00096 248 TMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFITSNLVGVDENGTLIKEFEASH-GTVTDMDEARLRGEETSLNP 326 (393)
T ss_pred HHHHHhCcccCCEEEECcccchHHHHHHHHhcCCcccccccccCCccCCccceEEEcCC-CChHHhhhhhhcCCCCccCh
Confidence 389999999999999999999999999 99999999999999943 3 8999999 9999999 895 9999
Q ss_pred HHHHHHHHHHhhhc----Cc----HHHHHHHHHHHHHHHHcCCcccCCCCC--CCCHHHHHHHHHHhc
Q psy9338 72 TAMLLCSTKMLSHV----NL----QYYGDMIRNAVNRVLKAGKVRTKDLGG--QSTTQEYTYAVIANL 129 (130)
Q Consensus 72 ~a~ils~ammL~~l----g~----~~~A~~i~~Av~~~l~~g~~~T~DlgG--~~tT~e~~~avi~~l 129 (130)
+|+|||++|||+|+ |+ .++|++|++||.+++++| .+|+||+| .++|+||+++|+++|
T Consensus 327 iA~IlA~a~mL~~~~~l~g~~~~l~~~A~~Ie~Av~~tie~G-~~T~DL~g~~~~tT~ef~daI~~~L 393 (393)
T PLN00096 327 LGMVEGLIGAMNHAADVHGGKERVHPFTAKLRAVIHKLFREG-RGTRDLCGAGGLTTEQFIDAVAEEL 393 (393)
T ss_pred HHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHHHHHhcC-CcCcCCCCCCCCCHHHHHHHHHHhC
Confidence 99999999999998 66 669999999999999999 88999955 789999999999886
No 27
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=3.7e-45 Score=309.40 Aligned_cols=122 Identities=22% Similarity=0.318 Sum_probs=115.8
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcc--eeccCCCCccccc-----cCC-cccChHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECV--VFEPGARHTYSEA-----VGK-NVANPTAM 74 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~--~fEp~h~Gsapdi-----aGk-~~ANP~a~ 74 (130)
+||||++|++| ||||+|||||||||+ +++||+||+||+|+|++++ +|||+| |||||| +|| ++|||+|+
T Consensus 254 ~m~lv~~P~~f-Viv~~NlfGDIlSDlaA~l~GslGl~pSanig~~~~~~~fEp~H-GSApdi~~~~iaGk~~~ANP~A~ 331 (409)
T TIGR00127 254 VAQALKSEGGF-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLICPDGKTFEAEAAH-GTVTRHYRMYQKGQETSTNSIAS 331 (409)
T ss_pred HHHHhhCCCCc-EEEecccchHHHHHHHHHhcCchhhhheeeeCCCCceEEecccc-CCCcccchhhhCCCCCccChHHH
Confidence 39999999999 999999999999999 9999999999999998865 669999 999998 996 79999999
Q ss_pred HHHHHHHhhhcC-------cHHHHHHHHHHHHHHHHcCCcccCCC----CCC-------CCHHHHHHHHHHhc
Q psy9338 75 LLCSTKMLSHVN-------LQYYGDMIRNAVNRVLKAGKVRTKDL----GGQ-------STTQEYTYAVIANL 129 (130)
Q Consensus 75 ils~ammL~~lg-------~~~~A~~i~~Av~~~l~~g~~~T~Dl----gG~-------~tT~e~~~avi~~l 129 (130)
|||++|||+|+| +.++|++|++||.+++++| ++|+|| ||+ ++|+||+++|+++|
T Consensus 332 IlS~ammL~~lg~~~~~~g~~~~A~~Ie~Av~~~i~~g-~~T~Dl~~~~GG~~~~~~~~~~T~e~~daV~~~L 403 (409)
T TIGR00127 332 IFAWSRGLAHRAKLDNNPELSKFANILESACINTVEAG-IMTKDLALILGGSPVERSAYLNTEEFIDAVEERL 403 (409)
T ss_pred HHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHhcC-CcccccccccCCCcccCCCCcCHHHHHHHHHHHH
Confidence 999999999986 6899999999999999999 899999 888 99999999999987
No 28
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=8.4e-43 Score=299.28 Aligned_cols=123 Identities=21% Similarity=0.232 Sum_probs=115.9
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCc--ceeccCCCCcccc-----ccCCcc-cChHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPEC--VVFEPGARHTYSE-----AVGKNV-ANPTAM 74 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~--~~fEp~h~Gsapd-----iaGk~~-ANP~a~ 74 (130)
+||||++|++| ||||+||||||+||+ +++||+||+||+|+|+++ .+|||+| ||||| ++||++ |||+|+
T Consensus 324 ~~~lvk~P~~F-Viv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fEa~H-GSapd~~~~~iaGk~t~ANPiA~ 401 (483)
T PLN03065 324 VAYAVKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAH-GTVTRHFRLHQKGQETSTNSIAS 401 (483)
T ss_pred HHHHHhCCCCc-EEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEecCc-CcCccccchhccCCCCCcChHHH
Confidence 38999999999 999999999999999 999999999999999876 5999999 99999 899995 999999
Q ss_pred HHHHHHHhhhcCc-------HHHHHHHHHHHHHHHHcCCcccCCCC----CC-------CCHHHHHHHHHHhcC
Q psy9338 75 LLCSTKMLSHVNL-------QYYGDMIRNAVNRVLKAGKVRTKDLG----GQ-------STTQEYTYAVIANLK 130 (130)
Q Consensus 75 ils~ammL~~lg~-------~~~A~~i~~Av~~~l~~g~~~T~Dlg----G~-------~tT~e~~~avi~~l~ 130 (130)
|+|++|||+|+|. .++|++||+||.+++++| .+|+||| |. ++|+||+|+|+++|+
T Consensus 402 IlA~ammL~hlg~ld~~~~l~~~A~~Le~Av~~tie~G-~~T~DLg~~~~G~~~~~~~~~~T~ef~daV~~~L~ 474 (483)
T PLN03065 402 IFAWTRGLEHRAKLDKNEELLDFVHKLESACIETVESG-KMTKDLAILIHGPKVSREFYLNTEEFIDAVAQTLA 474 (483)
T ss_pred HHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHcC-CcccccccccCCCcccCCCCcCHHHHHHHHHHHHH
Confidence 9999999999998 679999999999999999 7899996 63 899999999999874
No 29
>KOG0786|consensus
Probab=100.00 E-value=1.9e-41 Score=273.43 Aligned_cols=124 Identities=31% Similarity=0.368 Sum_probs=116.0
Q ss_pred ccchhhhcCCCCc-eeeeCCcchhhhhhh--hhcccccccccccCCC------CcceeccCCCCccccccCCcccChHHH
Q psy9338 4 SELDLKEDSKQLS-APSVKSKQNNIWLDL--RLVGGAGVVAGASWSP------ECVVFEPGARHTYSEAVGKNVANPTAM 74 (130)
Q Consensus 4 ~~~~lv~~P~~fd-Viv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~------~~~~fEp~h~GsapdiaGk~~ANP~a~ 74 (130)
.|||||++|.+|| +|||.|+||||+||. .+.||+||.||++++. .+++|||+| ||||||+||+++||+|+
T Consensus 225 AAM~Lvk~P~~lng~ivT~NiFGDIiSDEASvIpGSlGlLPSASLs~v~~~es~~gL~EPiH-GSAPDiagk~kvNPlaT 303 (363)
T KOG0786|consen 225 AAMQLVKDPKQLNGTIVTNNIFGDIISDEASVIPGSLGLLPSASLSGVVSEESGPGLFEPIH-GSAPDIAGKDKVNPLAT 303 (363)
T ss_pred HHHHHhcCchhcCceEEeccchhhhhccccccccCccccccchhhcCCcccccCCcccccCC-CCCCCcCCCCccChHHH
Confidence 3699999999999 999999999999999 8999999999999982 479999999 99999999999999999
Q ss_pred HHHHHHHhhh-cCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhc
Q psy9338 75 LLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANL 129 (130)
Q Consensus 75 ils~ammL~~-lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l 129 (130)
|||++|||+| |+++++|++||+||.+++..| +||.|+||..+|.+.++++.+.+
T Consensus 304 ILSAamlLkygLn~pkeakaIEdAV~kvLd~G-~rTgDlgg~~st~~~~kav~EEv 358 (363)
T KOG0786|consen 304 ILSAAMLLKYGLNEPKEAKAIEDAVVKVLDKG-FRTGDLGGPGSTLVGCKAVGEEV 358 (363)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHhcc-ccccccCCCCcchhhHHHHHHHH
Confidence 9999999999 999999999999999999999 99999999988877777776654
No 30
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=4.7e-39 Score=268.91 Aligned_cols=123 Identities=30% Similarity=0.390 Sum_probs=118.9
Q ss_pred chhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHhh
Q psy9338 6 LDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLS 83 (130)
Q Consensus 6 ~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL~ 83 (130)
+|++++|+.||||.|+||.||++||. +.+||+|++||+|+|+.+++||++| ||||+++||+.+||+|.|||+.|||+
T Consensus 276 qQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~pgani~~~~~~fEA~H-GTapk~aG~~~~Np~a~Ils~~~ml~ 354 (407)
T COG0538 276 QQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLAPGANIGDGTAEFEATH-GTAPKYAGKDSTNPIASILSGTMMLR 354 (407)
T ss_pred HHHhcCCCCceEEEeccCCccHHHHHHHHhcCCccccccceecCceEEEEecc-CccccccCcCCCCcHHHHHHHHHHHH
Confidence 79999999999999999999999999 9999999999999999999999999 99999999999999999999999999
Q ss_pred hcCcHHHHHHHHHHHHHHHHcCCcccCCCC----C---CCCHHHHHHHHHHhcC
Q psy9338 84 HVNLQYYGDMIRNAVNRVLKAGKVRTKDLG----G---QSTTQEYTYAVIANLK 130 (130)
Q Consensus 84 ~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlg----G---~~tT~e~~~avi~~l~ 130 (130)
|+||.++|+.|++|+.+++++| ..|+||. + .++|+||+|+|+++|+
T Consensus 355 ~~Gw~eaa~li~~a~~~ti~~~-~vT~DlArl~~~~~~~v~tsEF~d~ii~~l~ 407 (407)
T COG0538 355 HRGWLEAADLIEKAVEDTIESG-KVTYDLARLMGGAKRYLSTSEFADAIIENLK 407 (407)
T ss_pred HhhhhhhHHHHHHHHHHHHHhC-ceeHHHHHhhCCCccceeHHHHHHHHHHhcC
Confidence 9999999999999999999998 7799995 3 5799999999999986
No 31
>KOG1526|consensus
Probab=99.56 E-value=9.2e-15 Score=121.16 Aligned_cols=122 Identities=23% Similarity=0.309 Sum_probs=106.9
Q ss_pred chhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceec--cCCCCccccc-----cCC-cccChHHHH
Q psy9338 6 LDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFE--PGARHTYSEA-----VGK-NVANPTAML 75 (130)
Q Consensus 6 ~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fE--p~h~Gsapdi-----aGk-~~ANP~a~i 75 (130)
.|+++....| |+.|.|+.||+.||+ +-.||+||..|.-+.|+.--|| ++| ||.... .|+ --.||+|.|
T Consensus 266 Aqa~KS~GGf-vwAcKNYDGDVqSD~vAQg~GSLGlMTSVLv~pdGKT~EaEAAH-GTVtRHyr~hqkG~eTSTN~IASI 343 (422)
T KOG1526|consen 266 AQAMKSEGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAH-GTVTRHYRMHQKGQETSTNSIASI 343 (422)
T ss_pred HHHHhcCCce-EEEeecCCCchhhhHHHhcccchhhheeEEEcCCCCeeeeeccc-cchhHHHHHHhcCCCccCcchHHH
Confidence 5889999999 999999999999999 7899999999999999765554 688 999886 465 589999999
Q ss_pred HHHHHHhhhcC-------cHHHHHHHHHHHHHHHHcCCcccCCC----CC------CCCHHHHHHHHHHhcC
Q psy9338 76 LCSTKMLSHVN-------LQYYGDMIRNAVNRVLKAGKVRTKDL----GG------QSTTQEYTYAVIANLK 130 (130)
Q Consensus 76 ls~ammL~~lg-------~~~~A~~i~~Av~~~l~~g~~~T~Dl----gG------~~tT~e~~~avi~~l~ 130 (130)
+||.--|.|-+ +..+++.+|+|.-.+++.| ..|+|| +| ..+|+||.|+|.++|+
T Consensus 344 FAWtRgl~hR~kLD~n~~l~~F~~~LE~aci~tve~G-~MTKDLal~i~g~~~r~~y~~T~eFidav~~~L~ 414 (422)
T KOG1526|consen 344 FAWTRGLAHRAKLDNNEALAKFANALEKACIETVESG-KMTKDLALCIHGKVERSDYLNTEEFIDAVASNLK 414 (422)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhc-cchHhHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 99999998854 4578999999999999999 679999 33 3699999999998874
No 32
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=96.17 E-value=0.012 Score=53.30 Aligned_cols=97 Identities=18% Similarity=0.196 Sum_probs=71.3
Q ss_pred eeeeCCcchhhhhhh----hhcccccccccccCCCCcceeccCCCCccccccCC------cccChHHHHHHHHHHhhhcC
Q psy9338 17 APSVKSKQNNIWLDL----RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGK------NVANPTAMLLCSTKMLSHVN 86 (130)
Q Consensus 17 Viv~~Nl~GDIlsd~----~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk------~~ANP~a~ils~ammL~~lg 86 (130)
+=||.|..-|+|+|+ .+--|.=|++=.=+=.+.++||+..-||||+++-| =.=+..+-+|+.+--|+|++
T Consensus 539 ISVTGNVLRDYLTDLFPILElGTSAKMLSIVPLm~GGGLFETGAGGSAPKHVqQf~eEnhLRWDSLGEFlALa~Sle~la 618 (741)
T TIGR00178 539 ISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFLEENHLRWDSLGEFLALAASLEHLG 618 (741)
T ss_pred EEEechhHHhhhcchhhhhhhccchhhhhhhhcccCCceecCCCCCCccHHHHHHHHcCcccccchhhHHHHHHHHHHHH
Confidence 669999999999999 43223323221112235689999777999998643 25678999999999999987
Q ss_pred cH-------HHHHHHHHHHHHHHHcCCcccCCCC
Q psy9338 87 LQ-------YYGDMIRNAVNRVLKAGKVRTKDLG 113 (130)
Q Consensus 87 ~~-------~~A~~i~~Av~~~l~~g~~~T~Dlg 113 (130)
.. -.|+.+++|..+.++++|.-.+..|
T Consensus 619 ~~~~n~ka~vLa~tLd~At~k~L~n~ksPsRkvg 652 (741)
T TIGR00178 619 NATGNPKALVLADTLDAATGKLLDNNKSPSRKVG 652 (741)
T ss_pred HhcCChHHHHHHHHHHHHHHHHHhCCCCCCcccC
Confidence 54 2388999999999999876555555
No 33
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=96.01 E-value=0.012 Score=53.14 Aligned_cols=98 Identities=18% Similarity=0.211 Sum_probs=63.7
Q ss_pred eeeeCCcchhhhhhh----hhcccccccccccCCCCcceeccCCCCccccccCC----c--ccChHHHHHHHHHHhhhcC
Q psy9338 17 APSVKSKQNNIWLDL----RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGK----N--VANPTAMLLCSTKMLSHVN 86 (130)
Q Consensus 17 Viv~~Nl~GDIlsd~----~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk----~--~ANP~a~ils~ammL~~lg 86 (130)
+=||.|..=|+|+|+ .+--|.=|++=.=+=.+.++||+..-||||+++-| | .=+..+-+|+.+--|+|++
T Consensus 535 ISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLm~GGGLFETGAGGSAPKHVqQf~eEnhLRWDSLGEFlALa~Sle~l~ 614 (735)
T PF03971_consen 535 ISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQFVEENHLRWDSLGEFLALAVSLEHLA 614 (735)
T ss_dssp EEEE-HHHHHHHHHHHHHHHHS-STTSEEEEEBTTS-EEEES-SS---HHHHHHHCCCS-----THHHHHHHHHHHHHHH
T ss_pred EEeechHHHhhhcchhhhhhhccchhhhhhhhcccCCceeccCCCCCccHHHHHHHHcCcccccchhhHHHHHHHHHHHH
Confidence 669999999999999 44333333322222235689999776999998533 2 5678999999999999987
Q ss_pred cH-------HHHHHHHHHHHHHHHcCCcccCCCCC
Q psy9338 87 LQ-------YYGDMIRNAVNRVLKAGKVRTKDLGG 114 (130)
Q Consensus 87 ~~-------~~A~~i~~Av~~~l~~g~~~T~DlgG 114 (130)
.. -.|+.+++|+.+.+++++.-.+..|.
T Consensus 615 ~~~~n~ka~vLa~tLd~At~~~L~n~ksPsRkvge 649 (735)
T PF03971_consen 615 QKTGNPKAKVLADTLDAATGKFLENNKSPSRKVGE 649 (735)
T ss_dssp HHCT-HHHHHHHHHHHHHHHHHHHTT-S--SSTTS
T ss_pred HhcCChHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 54 35889999999999998766666653
No 34
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=95.84 E-value=0.0064 Score=50.47 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=36.8
Q ss_pred hcCCCCceeeeCCcchhhhhhhhh--cccccccccccCCCC--cceeccCCCCccccccCCcccChHHHHHHHHH
Q psy9338 10 EDSKQLSAPSVKSKQNNIWLDLRL--VGGAGVVAGASWSPE--CVVFEPGARHTYSEAVGKNVANPTAMLLCSTK 80 (130)
Q Consensus 10 ~~P~~fdViv~~Nl~GDIlsd~~l--~Gg~Gl~ps~nig~~--~~~fEp~h~GsapdiaGk~~ANP~a~ils~am 80 (130)
.+-++||++|+ || .|.|+ +=-++.--+.|+.-+ .----|-| |||-|||||++|||.+++-|.-+
T Consensus 229 ~~~~~fD~vva--MY----HDQGlip~K~l~f~~gVnvTlGLP~iRTS~DH-GTAfDIAGkg~A~~~s~~~Ai~~ 296 (298)
T PF04166_consen 229 ANRGKFDAVVA--MY----HDQGLIPFKLLGFDEGVNVTLGLPIIRTSPDH-GTAFDIAGKGIADPSSMIEAIKL 296 (298)
T ss_dssp HHHTT-SEEEE--SS----HHHHHHHHHHHCTTTSEEEEESSSSEEEEESS--S-CCGTTTTTS-THHHHHHHHH
T ss_pred chhccCCEEEE--ee----cccCccceeecccccceEEecCCCeeeecCCC-CchhhhhCCCCCChHHHHHHHHH
Confidence 34578888877 44 44411 112233344555332 22334677 99999999999999999988654
No 35
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=95.22 E-value=0.015 Score=48.82 Aligned_cols=63 Identities=11% Similarity=-0.028 Sum_probs=39.5
Q ss_pred CCCceeeeCCcchhhhhhhhh--cccccccccccCCCCcc--eeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 13 KQLSAPSVKSKQNNIWLDLRL--VGGAGVVAGASWSPECV--VFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 13 ~~fdViv~~Nl~GDIlsd~~l--~Gg~Gl~ps~nig~~~~--~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
++||++|+ || .|.|+ +=-++.--+.|+.-+-. ---|-| |||-|||||++|||.+++-|.-+-.
T Consensus 257 ~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLP~iRTS~DH-GTAfDIAGkG~A~~~S~~~Ai~lA~ 323 (326)
T PRK03371 257 GQYDMVVA--MY----HDQGHIPLKLLGFYDGVNITAGLPFIRTSADH-GTAFDIAWTGKAKSESMAVSIKLAM 323 (326)
T ss_pred cCCCEEEE--cc----ccccchhheecccccceEEecCCCeeEecCCC-CchhhhhcCCcCCHHHHHHHHHHHH
Confidence 45665555 22 44422 22334445566543322 233667 9999999999999999998876643
No 36
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=95.12 E-value=0.016 Score=48.79 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=32.6
Q ss_pred ccccccccCCCCcc--eeccCCCCccccccCCcccChHHHHHHHHHHhh
Q psy9338 37 AGVVAGASWSPECV--VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLS 83 (130)
Q Consensus 37 ~Gl~ps~nig~~~~--~fEp~h~GsapdiaGk~~ANP~a~ils~ammL~ 83 (130)
++.-.+.|+.-+-. ---|-| |||-|||||++|||.+++-|.-+-.+
T Consensus 278 l~F~~gVNvTlGLPiiRTS~DH-GTAfDIAGkg~A~~~S~~~Ai~lA~~ 325 (332)
T PRK00232 278 LGFGRGVNITLGLPFIRTSVDH-GTALDLAGKGIADVGSFITALNLAIR 325 (332)
T ss_pred cccCcceEEecCCCeeEeCCCC-cchhhhhcCCCCCHHHHHHHHHHHHH
Confidence 34445566644322 233667 99999999999999999988776544
No 37
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=95.04 E-value=0.018 Score=48.56 Aligned_cols=64 Identities=9% Similarity=-0.127 Sum_probs=40.7
Q ss_pred CCCceeeeCCcchhhhhhhhh--cccccccccccCCCCcc--eeccCCCCccccccCCcccChHHHHHHHHHHhh
Q psy9338 13 KQLSAPSVKSKQNNIWLDLRL--VGGAGVVAGASWSPECV--VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLS 83 (130)
Q Consensus 13 ~~fdViv~~Nl~GDIlsd~~l--~Gg~Gl~ps~nig~~~~--~fEp~h~GsapdiaGk~~ANP~a~ils~ammL~ 83 (130)
++||++|+ || .|.|+ +=-++.-.+.|+.-+-. ---|-| |||-|||||++|||.+++-|.-+-.+
T Consensus 258 ~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLP~iRTS~DH-GTAfDIAGkg~A~~~S~~~Ai~lA~~ 325 (332)
T PRK03743 258 GRYDAVLS--LY----HDQGHIATKTLDFERTIAITNGLPFLRTSVDH-GTAFDIAGTGKASSVSMEEAILLAAK 325 (332)
T ss_pred cCCCEEEE--cc----cccCChhheecccCCceEEecCCCeeEeCCCC-cchhhhhcCCCCCHHHHHHHHHHHHH
Confidence 45666665 22 44421 22334445566543322 234667 99999999999999999988776544
No 38
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=94.91 E-value=0.041 Score=49.19 Aligned_cols=100 Identities=17% Similarity=0.193 Sum_probs=71.0
Q ss_pred CCc-eeeeCCcchhhhhhh----hhcccccccccccCCCCcceeccCCCCccccccCC----c--ccChHHHHHHHHHHh
Q psy9338 14 QLS-APSVKSKQNNIWLDL----RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGK----N--VANPTAMLLCSTKML 82 (130)
Q Consensus 14 ~fd-Viv~~Nl~GDIlsd~----~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk----~--~ANP~a~ils~ammL 82 (130)
.-| +-||.|..-|+|+|+ .|--|.-|++-.-+=.+.+|||+..-||||+.+-| | .=+..+-+|+.+.-|
T Consensus 537 G~DtIsvTGNvLRDYlTDLFPIlELGTSAKMLSiVPlmaGGgmfETGAGGSAPKhVqQ~~eENhLRWDSLGEFLALa~sl 616 (744)
T COG2838 537 GEDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQLVEENHLRWDSLGEFLALAASL 616 (744)
T ss_pred CCceeEecchHHHHHHhhhhhHhhcccccchheeeeeccCCceeecCCCCCCcHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 345 568999999999999 33223223222222235689999777999997543 3 457889999999999
Q ss_pred hhcCcH-------HHHHHHHHHHHHHHHcCCcccCCCC
Q psy9338 83 SHVNLQ-------YYGDMIRNAVNRVLKAGKVRTKDLG 113 (130)
Q Consensus 83 ~~lg~~-------~~A~~i~~Av~~~l~~g~~~T~Dlg 113 (130)
+|++.. -.|+.++.|..+.+.+.|.-.+..|
T Consensus 617 e~~~~k~gn~kAkvLa~~LD~AtgklLdn~KsPsRkvg 654 (744)
T COG2838 617 EHLGNKTGNAKAKVLAKALDAATGKLLDNNKSPSRKVG 654 (744)
T ss_pred HHHhhhcccHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 998754 2488899999999988765555444
No 39
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=94.90 E-value=0.021 Score=47.88 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=30.8
Q ss_pred cccccccCCCCcc--eeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 38 GVVAGASWSPECV--VFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 38 Gl~ps~nig~~~~--~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+.--+.|+.-+-. ---|-| |||-|||||++|||.+++-|.-+..
T Consensus 272 ~F~~gVNvTlGLPiiRTS~DH-GTAfDIAGkg~A~~~S~~~Ai~~A~ 317 (320)
T TIGR00557 272 GFDEGVNVTLGLPFIRTSPDH-GTAFDIAGKGKADPGSLIAAIKLAI 317 (320)
T ss_pred ccCcceEEecCCCeeEeCCCC-cchhhhhcCCCCCHHHHHHHHHHHH
Confidence 4444555543322 233667 9999999999999999888876643
No 40
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=94.89 E-value=0.02 Score=48.16 Aligned_cols=46 Identities=15% Similarity=0.102 Sum_probs=32.1
Q ss_pred ccccccccCCCCcc--eeccCCCCccccccCCcccChHHHHHHHHHHhh
Q psy9338 37 AGVVAGASWSPECV--VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLS 83 (130)
Q Consensus 37 ~Gl~ps~nig~~~~--~fEp~h~GsapdiaGk~~ANP~a~ils~ammL~ 83 (130)
++.--+.|+--+.. ---|-| |||-|||||++|||.+++-|.-+-.+
T Consensus 274 l~F~~gVNvTlGLP~iRTSvDH-GTAfDIAGkg~A~~~S~~~Ai~lA~~ 321 (329)
T PRK01909 274 ATFGEGINVTLGLPIIRTSVDH-GTALDLAGTGRADPGSMIAAIDTAVT 321 (329)
T ss_pred cccCcceEEecCCCeeEeCCCC-cchhhhhcCCCCCHHHHHHHHHHHHH
Confidence 34445556543322 233667 99999999999999999888776544
No 41
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=94.84 E-value=0.021 Score=48.15 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=31.4
Q ss_pred cccccccCCCCcc--eeccCCCCccccccCCcccChHHHHHHHHHHhh
Q psy9338 38 GVVAGASWSPECV--VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLS 83 (130)
Q Consensus 38 Gl~ps~nig~~~~--~fEp~h~GsapdiaGk~~ANP~a~ils~ammL~ 83 (130)
+.--+.|+.-+-. ---|-| |||-|||||++|||.+++-|.-+-.+
T Consensus 284 ~F~~gVNvTlGLP~iRTSvDH-GTAfDIAGkg~A~~~S~~~Ai~lA~~ 330 (336)
T PRK05312 284 DFDGGVNVTLGLPFIRTSPDH-GTAFDIAGKGIARPDSLIAALRLAAQ 330 (336)
T ss_pred ccCcceEEecCCCeeEeCCCC-cchhhhhcCCCCCHHHHHHHHHHHHH
Confidence 3334555543322 223567 99999999999999999888776544
No 42
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=94.77 E-value=0.023 Score=48.18 Aligned_cols=64 Identities=16% Similarity=0.050 Sum_probs=41.8
Q ss_pred CCCceeeeCCcchhhhhhhhh--cccccccccccCCCCc--ceeccCCCCccccccCCcccChHHHHHHHHHHhh
Q psy9338 13 KQLSAPSVKSKQNNIWLDLRL--VGGAGVVAGASWSPEC--VVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLS 83 (130)
Q Consensus 13 ~~fdViv~~Nl~GDIlsd~~l--~Gg~Gl~ps~nig~~~--~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL~ 83 (130)
++||++|+ || .|.|+ +=-++.-.+.|+.-+- ----|-| |||-|||||++|||.+++-|.-+-.+
T Consensus 271 ~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLP~iRTS~DH-GTAfDIAGkg~A~~~S~~~Ai~lA~~ 338 (345)
T PRK02746 271 EAPDGYLA--LY----HDQGLIPVKLMAFDRAVNTTIGLPFIRTSPDH-GTAFDIAGKGIARPQSMKAAIKLAWE 338 (345)
T ss_pred CCCCEEEE--Cc----ccCCChhheeeccCcceEEecCCCeeEeCCCC-cchhhhhcCCCCCHHHHHHHHHHHHH
Confidence 56777776 33 45421 2233444566664432 2234667 99999999999999999988776544
No 43
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=94.74 E-value=0.024 Score=47.34 Aligned_cols=45 Identities=16% Similarity=-0.048 Sum_probs=31.5
Q ss_pred cccccccCCCCc--ceeccCCCCccccccCCc-ccChHHHHHHHHHHhh
Q psy9338 38 GVVAGASWSPEC--VVFEPGARHTYSEAVGKN-VANPTAMLLCSTKMLS 83 (130)
Q Consensus 38 Gl~ps~nig~~~--~~fEp~h~GsapdiaGk~-~ANP~a~ils~ammL~ 83 (130)
+.--+.|+--+- ----|-| |||-|||||+ +|||.+++-|.-+-.+
T Consensus 255 ~F~~gVnvTlGLP~iRTSpDH-GTAfDIAGkg~~A~~~S~~~Ai~lA~~ 302 (307)
T PRK03946 255 YFDESINVSLNLPILRTSVDH-GTAFDIAYKNAKANTKSYLNAIKYAIN 302 (307)
T ss_pred ccCcceEEecCCCEeEecCCC-CchhhhcCCCCcCCHHHHHHHHHHHHH
Confidence 344455554332 2233667 9999999999 9999999888766444
No 44
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=94.56 E-value=0.025 Score=47.65 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=30.2
Q ss_pred cccccccCCCCc--ceeccCCCCccccccCCcccChHHHHHHHHHH
Q psy9338 38 GVVAGASWSPEC--VVFEPGARHTYSEAVGKNVANPTAMLLCSTKM 81 (130)
Q Consensus 38 Gl~ps~nig~~~--~~fEp~h~GsapdiaGk~~ANP~a~ils~amm 81 (130)
|.--+.|+.-+- ----|-| |||-||||||+|||.+++-|..+.
T Consensus 278 ~Fd~~VNvtlGLPfiRTS~DH-GTAfDiAgkGiA~~~S~~~Ai~lA 322 (332)
T COG1995 278 GFDRGVNVTLGLPFIRTSVDH-GTAFDIAGKGIADPGSLIAAIKLA 322 (332)
T ss_pred ccccceEEecCCCeeeecCCc-cchhhhhcCCcCCchHHHHHHHHH
Confidence 333456664332 2233567 999999999999999988877653
No 45
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT. The molecular function of these proteins is unknown, however these proteins usually contain an XS domain (IPR005380 from INTERPRO) that is also found in the PTGS protein SGS3. As the XS and XH domains are fused in most of these proteins, these two domains may interact. The XH domain is between 124 and 145 residues in length and contains a conserved glutamate residue that may be functionally important [].
Probab=52.90 E-value=39 Score=25.05 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHc-------CCcccCCC-----CCCCCHHHHHHHHHHhcC
Q psy9338 89 YYGDMIRNAVNRVLKA-------GKVRTKDL-----GGQSTTQEYTYAVIANLK 130 (130)
Q Consensus 89 ~~A~~i~~Av~~~l~~-------g~~~T~Dl-----gG~~tT~e~~~avi~~l~ 130 (130)
+..+-+.+||.+++.+ |++.++.| |..+|.+|..+.|+++++
T Consensus 73 e~Geevy~aV~~Al~E~nEyN~sGry~v~eLWN~ke~RkAtl~E~v~~i~~q~k 126 (132)
T PF03469_consen 73 EWGEEVYNAVTKALLEINEYNPSGRYPVPELWNFKEGRKATLKEVVQYILKQWK 126 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCccCCccccccccCHHHHHHHHHHHHH
Confidence 4566666777766643 66777777 678999999999988753
No 46
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=40.32 E-value=44 Score=29.39 Aligned_cols=85 Identities=19% Similarity=0.288 Sum_probs=55.2
Q ss_pred eeCCcchhhhhhh-hhccccccc-ccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHhhhcCcHHHHHHHHH
Q psy9338 19 SVKSKQNNIWLDL-RLVGGAGVV-AGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRN 96 (130)
Q Consensus 19 v~~Nl~GDIlsd~-~l~Gg~Gl~-ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL~~lg~~~~A~~i~~ 96 (130)
.+.|+|-++...- -+.||.|-. ++..+++.+.+ | .+..+..--+-++++.+.-.||+.-|..+.|+.+|+
T Consensus 258 a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~l--p------~~~~~~EtCas~~~~~~~~~L~~~tgd~~yaD~~Er 329 (520)
T PF07944_consen 258 AAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDL--P------NRLAYAETCASVNMMKLARRLFRLTGDARYADYYER 329 (520)
T ss_pred HHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCC--C------cCCCCccccHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 4556666655554 556665522 22333332221 1 122234457888999999999999999999999999
Q ss_pred HHHHHHHcCCcccCCCC
Q psy9338 97 AVNRVLKAGKVRTKDLG 113 (130)
Q Consensus 97 Av~~~l~~g~~~T~Dlg 113 (130)
++...+-.+ .++|-+
T Consensus 330 ~lyN~~la~--~~~d~~ 344 (520)
T PF07944_consen 330 ALYNALLAG--QSPDGG 344 (520)
T ss_pred HHhcccccc--cCCCCC
Confidence 999887655 255554
No 47
>KOG1671|consensus
Probab=37.05 E-value=23 Score=28.25 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=32.3
Q ss_pred hhcccccccccccCCCCcceeccCCCCccccccCCcccCh
Q psy9338 32 RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANP 71 (130)
Q Consensus 32 ~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP 71 (130)
+++=-+|-.|-+|-|+..+.|-|.| ||-=|+.|+-.--|
T Consensus 151 gVCThLGCVp~~~AGd~gg~~CPCH-GSHYdasGRIrkGP 189 (210)
T KOG1671|consen 151 GVCTHLGCVPIANAGDYGGYYCPCH-GSHYDASGRIRKGP 189 (210)
T ss_pred eeeccccccccccccccCceecccc-cccccccCceecCC
Confidence 4555678999999999999999999 99999988755444
No 48
>PF11811 DUF3331: Domain of unknown function (DUF3331); InterPro: IPR021769 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family vary in length from 96 to 160 amino acids.
Probab=34.74 E-value=51 Score=23.19 Aligned_cols=33 Identities=30% Similarity=0.425 Sum_probs=25.2
Q ss_pred cccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHH
Q psy9338 40 VAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTK 80 (130)
Q Consensus 40 ~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~am 80 (130)
+.+.-|..+-.+|.|..+ +.| +|--+|||+.++
T Consensus 59 LSG~~I~rGD~VyrP~~r-~~P-------~N~~aMILAs~l 91 (96)
T PF11811_consen 59 LSGRPIRRGDAVYRPRRR-PRP-------ANADAMILASAL 91 (96)
T ss_pred CCCCEecCCCceECCCCC-CCC-------CCHHHHhhHHhh
Confidence 356666667789999873 555 699999999875
No 49
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=33.82 E-value=1e+02 Score=25.73 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=31.5
Q ss_pred HHHHhhhcCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHh
Q psy9338 78 STKMLSHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIAN 128 (130)
Q Consensus 78 ~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~ 128 (130)
.+-+|+..|++..|.+|-+++-+.-+.+.+ .||.|+++.|.+.
T Consensus 146 L~~i~~~yGEe~~a~~IA~~Iv~~R~~~~i--------~tt~~L~~ii~~~ 188 (305)
T TIGR00006 146 LERILKKYGEEKFSKRIARAIVERRKKKPI--------QTTKELAELISKA 188 (305)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHhcCCC--------CCHHHHHHHHHHH
Confidence 355777789999999999998766554433 4788888877654
No 50
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=31.87 E-value=64 Score=20.74 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHcCCcccCCCCCC-CCHHHHHHHHHHh
Q psy9338 90 YGDMIRNAVNRVLKAGKVRTKDLGGQ-STTQEYTYAVIAN 128 (130)
Q Consensus 90 ~A~~i~~Av~~~l~~g~~~T~DlgG~-~tT~e~~~avi~~ 128 (130)
.++.+.+.+...+++|+..+-|+-|- .-|+.|.++....
T Consensus 2 ~G~~~~~~i~~~l~~~~~V~lDF~gv~~~~ssFl~eafg~ 41 (74)
T PF14213_consen 2 DGERLRDEIEPALKEGEKVVLDFEGVESITSSFLNEAFGQ 41 (74)
T ss_pred ChHHHHHHHHHHHhcCCeEEEECCCcccccHHHHHHHHHH
Confidence 46788888999999998889999774 5667777776544
No 51
>PF08769 Spo0A_C: Sporulation initiation factor Spo0A C terminal; InterPro: IPR014879 The response regulator Spo0A is comprised of a phophoacceptor domain and a transcription activation domain. This domain corresponds to the transcription activation domain and forms an alpha helical structure comprising of 6 alpha helices. The structure contains a helix-turn-helix and binds DNA [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005509 calcium ion binding, 0006355 regulation of transcription, DNA-dependent, 0042173 regulation of sporulation resulting in formation of a cellular spore, 0005737 cytoplasm; PDB: 1FC3_C 1LQ1_D.
Probab=31.82 E-value=89 Score=21.94 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=12.6
Q ss_pred CCCCCHHHHHHHHHHhcC
Q psy9338 113 GGQSTTQEYTYAVIANLK 130 (130)
Q Consensus 113 gG~~tT~e~~~avi~~l~ 130 (130)
.++-|-+||.+.+.+.|+
T Consensus 89 ~~kPTnsEFI~~~~~~lr 106 (106)
T PF08769_consen 89 KGKPTNSEFIAMLADYLR 106 (106)
T ss_dssp SS---HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 356799999999998874
No 52
>KOG0354|consensus
Probab=29.80 E-value=20 Score=33.60 Aligned_cols=61 Identities=21% Similarity=0.219 Sum_probs=43.2
Q ss_pred ccccCCc--ccChHH---HHHHHHHHhhhcCcHH-------------HHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHH
Q psy9338 61 SEAVGKN--VANPTA---MLLCSTKMLSHVNLQY-------------YGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYT 122 (130)
Q Consensus 61 pdiaGk~--~ANP~a---~ils~ammL~~lg~~~-------------~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~ 122 (130)
|.+ ||| ++=||| +..|+..|++|+.|.. ..+++ |.....-.+.-.|..+||...++-+.
T Consensus 73 ~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~--a~~~~~~~~~~~T~~l~~~~~~~~r~ 149 (746)
T KOG0354|consen 73 PAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQI--ACFSIYLIPYSVTGQLGDTVPRSNRG 149 (746)
T ss_pred Hhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHH--HHHhhccCcccceeeccCccCCCchh
Confidence 556 998 889999 7999999999998764 35566 44444444456799999976555554
Q ss_pred HH
Q psy9338 123 YA 124 (130)
Q Consensus 123 ~a 124 (130)
+.
T Consensus 150 ~i 151 (746)
T KOG0354|consen 150 EI 151 (746)
T ss_pred hh
Confidence 43
No 53
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=28.56 E-value=27 Score=28.71 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=17.6
Q ss_pred CccccchhhhcCC-CCceeeeCCc
Q psy9338 1 IICSELDLKEDSK-QLSAPSVKSK 23 (130)
Q Consensus 1 ~~~~~~~lv~~P~-~fdViv~~Nl 23 (130)
+|+|+.+.|++.. .||||+..--
T Consensus 135 ~i~Dg~~~v~~~~~~fDvIi~D~t 158 (282)
T COG0421 135 IIDDGVEFLRDCEEKFDVIIVDST 158 (282)
T ss_pred EeccHHHHHHhCCCcCCEEEEcCC
Confidence 4789999999665 5999986433
No 54
>PRK13690 hypothetical protein; Provisional
Probab=26.96 E-value=1.8e+02 Score=22.88 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHHHHHcCCcccCCC-----------C---CCCCHHHHHHHHHHhc
Q psy9338 87 LQYYGDMIRNAVNRVLKAGKVRTKDL-----------G---GQSTTQEYTYAVIANL 129 (130)
Q Consensus 87 ~~~~A~~i~~Av~~~l~~g~~~T~Dl-----------g---G~~tT~e~~~avi~~l 129 (130)
+.+..+.++.++.+.++....+..|+ | |+.+..|++++|.+.|
T Consensus 3 ~~~i~~~~~~~~~El~~~a~l~~g~i~VvGcSTSEV~G~~IGt~ss~eva~~i~~~l 59 (184)
T PRK13690 3 LEEIKKQTRQILEELLEQANLKPGQIFVLGCSTSEVLGERIGTAGSLEVAEAIVEAL 59 (184)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCEEEEecchHhhCCcccCCcChHHHHHHHHHHH
Confidence 44566778888888888765655565 2 4689999999998765
No 55
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=26.10 E-value=64 Score=23.24 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHHHHHH--cCCcccCCCCCCCCHHHHHH
Q psy9338 87 LQYYGDMIRNAVNRVLK--AGKVRTKDLGGQSTTQEYTY 123 (130)
Q Consensus 87 ~~~~A~~i~~Av~~~l~--~g~~~T~DlgG~~tT~e~~~ 123 (130)
.....++|++++++... +|-+.=.||||+....+..-
T Consensus 41 ~gt~~~~I~~ai~~~~~~~dgVlvl~DLGgs~~n~e~a~ 79 (125)
T TIGR02364 41 LGTSPDKIIEAIEKADNEADGVLIFYDLGSAVMNAEMAV 79 (125)
T ss_pred ccchHHHHHHHHHHhcCCCCCEEEEEcCCCcHhHHHHHH
Confidence 44678899999999976 56677789988765554433
No 56
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=26.03 E-value=48 Score=23.85 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=19.0
Q ss_pred CCcceeccCCCCccccccCCcccCh
Q psy9338 47 PECVVFEPGARHTYSEAVGKNVANP 71 (130)
Q Consensus 47 ~~~~~fEp~h~GsapdiaGk~~ANP 71 (130)
....++-|.| ||.-|+.|+.+..|
T Consensus 82 ~~~~~~CPcH-gs~Fdl~G~~~~gP 105 (126)
T cd03470 82 DYGGFFCPCH-GSHYDASGRIRKGP 105 (126)
T ss_pred CCCEEEecCc-CCEECCCCeEecCC
Confidence 3456888988 99999999876655
No 57
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=26.00 E-value=83 Score=24.06 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhcC
Q psy9338 89 YYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANLK 130 (130)
Q Consensus 89 ~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l~ 130 (130)
....+|++.+.+.+++| +++.=.||..+....+..++-.||
T Consensus 26 ~ik~~L~~~i~~lie~G-~~~fi~GgalG~D~waae~vl~LK 66 (177)
T PF06908_consen 26 VIKKALKKQIIELIEEG-VRWFITGGALGVDLWAAEVVLELK 66 (177)
T ss_dssp HHHHHHHHHHHHHHTTT---EEEE---TTHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHCC-CCEEEECCcccHHHHHHHHHHHHH
Confidence 35678888888899998 777777999999999888887664
No 58
>PF04060 FeS: Putative Fe-S cluster; InterPro: IPR007202 These proteins contain a domain with four conserved cysteines that probably form an Fe-S redox cluster.; GO: 0051536 iron-sulfur cluster binding; PDB: 2YCL_A 4DJF_E 4DJD_C 4DJE_C.
Probab=25.28 E-value=59 Score=18.36 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHHHHh
Q psy9338 114 GQSTTQEYTYAVIAN 128 (130)
Q Consensus 114 G~~tT~e~~~avi~~ 128 (130)
|..|+.+|+++|++.
T Consensus 11 G~~~C~~fA~ai~~g 25 (35)
T PF04060_consen 11 GYPTCRAFAEAIVRG 25 (35)
T ss_dssp SSSSHHHHHHHHHCT
T ss_pred CCccHHHHHHHHHcC
Confidence 678999999999853
No 59
>PRK14700 recombination factor protein RarA; Provisional
Probab=24.35 E-value=1.2e+02 Score=25.42 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=19.2
Q ss_pred cccChHHHHHHHHH--HhhhcCcHHH
Q psy9338 67 NVANPTAMLLCSTK--MLSHVNLQYY 90 (130)
Q Consensus 67 ~~ANP~a~ils~am--mL~~lg~~~~ 90 (130)
+.|||-|+.++.+. ..+.+|++|+
T Consensus 175 GlAdP~al~~a~aa~~A~~~iG~PEa 200 (300)
T PRK14700 175 GNADPQALRVAMDAWNAYEKLGMPEG 200 (300)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCChHH
Confidence 58999998887766 4578999875
No 60
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=24.32 E-value=71 Score=21.28 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=20.0
Q ss_pred HHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhc
Q psy9338 95 RNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANL 129 (130)
Q Consensus 95 ~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l 129 (130)
...+-+++. |+||..+.+|+.++|.++.
T Consensus 6 ~~piL~~L~-------~~g~~~~~~ei~~~v~~~~ 33 (92)
T PF14338_consen 6 MPPILEALK-------DLGGSASRKEIYERVAERF 33 (92)
T ss_pred HHHHHHHHH-------HcCCCcCHHHHHHHHHHHh
Confidence 344555554 4568899999999998765
No 61
>TIGR00651 pta phosphate acetyltransferase. Model contains a gene from E.coli coding for ethanolamine utilization protein (euti) and also contains similarity to malate oxidoreductases
Probab=24.16 E-value=52 Score=27.23 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=19.9
Q ss_pred CCCceeeeCCcc-hhhhhhh-hhcccc
Q psy9338 13 KQLSAPSVKSKQ-NNIWLDL-RLVGGA 37 (130)
Q Consensus 13 ~~fdViv~~Nl~-GDIlsd~-~l~Gg~ 37 (130)
++-||+|+||++ |||+--+ ...|+.
T Consensus 243 G~AdvLV~Pnl~aGNi~~K~~~~~~~~ 269 (303)
T TIGR00651 243 GSANVFVFPDLDAGNIGYKIVQRLGDA 269 (303)
T ss_pred CcCCEEEeCCchHHHHHHHHHHHhcCC
Confidence 567999999999 9998887 555553
No 62
>PRK13660 hypothetical protein; Provisional
Probab=23.59 E-value=1.4e+02 Score=23.17 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhcC
Q psy9338 89 YYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANLK 130 (130)
Q Consensus 89 ~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l~ 130 (130)
..-.+|++.+.+.+++| ++.-=.||..+.+..+..++-.||
T Consensus 26 ~IK~aL~~~l~~~~e~G-~~wfi~ggalG~d~wAaEvvl~LK 66 (182)
T PRK13660 26 YIKKAIKRKLIALLEEG-LEWVIISGQLGVELWAAEVVLELK 66 (182)
T ss_pred HHHHHHHHHHHHHHHCC-CCEEEECCcchHHHHHHHHHHHHH
Confidence 34567888888888998 777777999999999888876654
No 63
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=23.40 E-value=1.9e+02 Score=23.99 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=30.7
Q ss_pred HHHHhhhcCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHh
Q psy9338 78 STKMLSHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIAN 128 (130)
Q Consensus 78 ~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~ 128 (130)
.+-+|+..|+...|.+|-+++.+.-+.+.+ .||.|+++.|.+.
T Consensus 144 L~~i~~~yGee~~a~~iA~~Iv~~R~~~~~--------~tt~~L~~~i~~~ 186 (296)
T PRK00050 144 LARIFKEYGEERFARRIARAIVEARPKKPI--------TTTGELAEIIKSA 186 (296)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHhccCCC--------CCHHHHHHHHHHH
Confidence 355777889999999999988655332322 5788888887654
No 64
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=23.17 E-value=1.1e+02 Score=25.57 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=28.9
Q ss_pred HHHHhhhcCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhc
Q psy9338 78 STKMLSHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANL 129 (130)
Q Consensus 78 ~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l 129 (130)
.+-.|+..|++..|.+|-+++.+.-+.+.+ .||.|+++.|.+.+
T Consensus 147 L~~I~~~yGee~~a~~IA~~Iv~~R~~~pi--------~tT~~L~~iI~~~~ 190 (310)
T PF01795_consen 147 LARIFREYGEEKFARRIARAIVEARKKKPI--------TTTKELAEIIEKAV 190 (310)
T ss_dssp HHHHHHHHH--TTHHHHHHHHHHHHHHSS----------BHHHHHHHHHHHS
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHhCCCCC--------CCHHHHHHHHHHhC
Confidence 344556667777888888888877666544 46889988887653
No 65
>COG4779 FepG ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism]
Probab=23.15 E-value=24 Score=29.95 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=17.3
Q ss_pred cccCCCCcceeccCCCC--ccccccCCc
Q psy9338 42 GASWSPECVVFEPGARH--TYSEAVGKN 67 (130)
Q Consensus 42 s~nig~~~~~fEp~h~G--sapdiaGk~ 67 (130)
++.+|=..++||+.||. -.|||.|-+
T Consensus 85 GAALGlsGAIFQs~trNpLGSPDiIGFt 112 (346)
T COG4779 85 GAALGLSGAIFQSLTRNPLGSPDIIGFT 112 (346)
T ss_pred HHHHhcchhhhhhhccCCCCCCCeeeec
Confidence 34455567899999872 238886643
No 66
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=22.63 E-value=2.4e+02 Score=23.90 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=31.9
Q ss_pred HHHHHhhhcCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHh
Q psy9338 77 CSTKMLSHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIAN 128 (130)
Q Consensus 77 s~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~ 128 (130)
..+-.|...|++.+|.+|-+|+.+-=+...+ .||.|+++.|.+.
T Consensus 149 ~L~~I~~~yGEEr~arrIA~aIv~~R~~~pi--------~tT~eLaeiI~~~ 192 (314)
T COG0275 149 DLARIFKEYGEERFAKRIARAIVERRKKKPI--------ETTKELAEIIKSA 192 (314)
T ss_pred HHHHHHHHhccHhhHHHHHHHHHHHhccCCC--------ccHHHHHHHHHHh
Confidence 3455677789999999999998765543333 5788888877654
No 67
>PF12002 MgsA_C: MgsA AAA+ ATPase C terminal; InterPro: IPR021886 The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities []. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication []. Additionally, MgsA may play a role in chromosomal segregation []. This is consistent with a report that MgsA co-localises with the replisome and affects chromosome segregation []. This domain represents the C-terminal region of MgsA. ; PDB: 2R9G_A 2QW6_D 3CTD_B 3PVS_B 3BGE_A.
Probab=22.54 E-value=68 Score=24.62 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=17.0
Q ss_pred cccChHHHHHHHHH--HhhhcCcHHH
Q psy9338 67 NVANPTAMLLCSTK--MLSHVNLQYY 90 (130)
Q Consensus 67 ~~ANP~a~ils~am--mL~~lg~~~~ 90 (130)
+.|||-|+.++.+. ..+.+|+++.
T Consensus 37 GlAdP~Al~~a~aa~~a~~~iG~PE~ 62 (168)
T PF12002_consen 37 GLADPQALSIAVAAYQAVERIGMPEA 62 (168)
T ss_dssp GGGSTCHHHHHHHHHHHHHHH-CCCC
T ss_pred hccCccHHHHHHHHHHHHHHHCCcHH
Confidence 57999998777666 4577888753
No 68
>KOG2865|consensus
Probab=22.36 E-value=52 Score=28.21 Aligned_cols=65 Identities=18% Similarity=0.062 Sum_probs=44.6
Q ss_pred cccCC--cccChHHHHHH--HHHHhhhcCcH---------HHHHHHHHHHHHHHHcCCcccCCCCCC--CCHHHHHHHHH
Q psy9338 62 EAVGK--NVANPTAMLLC--STKMLSHVNLQ---------YYGDMIRNAVNRVLKAGKVRTKDLGGQ--STTQEYTYAVI 126 (130)
Q Consensus 62 diaGk--~~ANP~a~ils--~ammL~~lg~~---------~~A~~i~~Av~~~l~~g~~~T~DlgG~--~tT~e~~~avi 126 (130)
||.|. ...||.+++.= ..+=|-+.||+ +.|+.|.+|+++--..| +|..++|. ..++|++|.+.
T Consensus 213 ~iyG~eDrfln~ya~~~rk~~~~pL~~~GekT~K~PVyV~DVaa~IvnAvkDp~s~G--ktye~vGP~~yql~eLvd~my 290 (391)
T KOG2865|consen 213 DIYGTEDRFLNYYASFWRKFGFLPLIGKGEKTVKQPVYVVDVAAAIVNAVKDPDSMG--KTYEFVGPDRYQLSELVDIMY 290 (391)
T ss_pred hhcccchhHHHHHHHHHHhcCceeeecCCcceeeccEEEehHHHHHHHhccCccccC--ceeeecCCchhhHHHHHHHHH
Confidence 46666 36777775543 11222234544 67999999999986667 59999884 68999998876
Q ss_pred Hh
Q psy9338 127 AN 128 (130)
Q Consensus 127 ~~ 128 (130)
+.
T Consensus 291 ~~ 292 (391)
T KOG2865|consen 291 DM 292 (391)
T ss_pred HH
Confidence 54
No 69
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=20.57 E-value=1.3e+02 Score=20.92 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=15.6
Q ss_pred HHHcCCcccCCCCCCCCHHHHHHHHHH
Q psy9338 101 VLKAGKVRTKDLGGQSTTQEYTYAVIA 127 (130)
Q Consensus 101 ~l~~g~~~T~DlgG~~tT~e~~~avi~ 127 (130)
.++.+.+.+.++|...+++++.+++.+
T Consensus 22 ~l~~~G~~vi~lG~~vp~e~~~~~a~~ 48 (122)
T cd02071 22 ALRDAGFEVIYTGLRQTPEEIVEAAIQ 48 (122)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHH
Confidence 344433666666666666666666543
No 70
>PF10798 YmgB: Biofilm development protein YmgB/AriR; InterPro: IPR024753 YmgB is part of the three gene cluster ymgABC which has a role in biofilm development and stability. YmgB represses biofilm formation in rich medium containing glucose, decreases cellular motility and also protects the cell from acid, which indicates that YmgB has an important function in acid-resistance []. YmgB binds as a dimer to genes which are important for biofilm formation via a ligand. Due to its important function in acid resistance it is also known as AriR (regulator of acid resistance influenced by indole) [].; GO: 0042710 biofilm formation, 0071229 cellular response to acid; PDB: 2OXL_B.
Probab=20.51 E-value=2.4e+02 Score=17.93 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhc
Q psy9338 89 YYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANL 129 (130)
Q Consensus 89 ~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l 129 (130)
++.+.+..++...+..| +..|-+++.-.++.+|
T Consensus 2 ~E~~vL~~iv~ell~~g--------~~vsnKaII~~LI~~L 34 (61)
T PF10798_consen 2 SESEVLGAIVRELLASG--------GHVSNKAIILKLIHRL 34 (61)
T ss_dssp HHHHHHHHHHHHHHHTT-----------SHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHH
Confidence 45677888888888887 4467777777777665
No 71
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.27 E-value=1.3e+02 Score=22.08 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=18.5
Q ss_pred HHHHcCCcccCCCCCCCCHHHHHHHHHH
Q psy9338 100 RVLKAGKVRTKDLGGQSTTQEYTYAVIA 127 (130)
Q Consensus 100 ~~l~~g~~~T~DlgG~~tT~e~~~avi~ 127 (130)
..+++..+...|||-..+.++|.+++.+
T Consensus 23 ~~l~~~GfeVi~LG~~v~~e~~v~aa~~ 50 (134)
T TIGR01501 23 HAFTNAGFNVVNLGVLSPQEEFIKAAIE 50 (134)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHH
Confidence 3444433777777777777777777765
Done!