Query psy9338
Match_columns 130
No_of_seqs 165 out of 1105
Neff 5.8
Searched_HMMs 29240
Date Sat Aug 17 00:45:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ty4_A Probable homoisocitrate 100.0 2E-55 6.9E-60 367.1 10.7 125 5-130 239-365 (366)
2 3blx_A Isocitrate dehydrogenas 100.0 7.4E-55 2.5E-59 361.9 8.7 126 5-130 220-347 (349)
3 1x0l_A Homoisocitrate dehydrog 100.0 7.8E-55 2.7E-59 359.9 8.8 124 5-130 206-331 (333)
4 1wpw_A 3-isopropylmalate dehyd 100.0 2.5E-54 8.6E-59 357.2 8.5 125 5-130 203-336 (336)
5 3udu_A 3-isopropylmalate dehyd 100.0 4E-54 1.4E-58 358.8 9.6 124 5-130 227-356 (361)
6 3flk_A Tartrate dehydrogenase/ 100.0 4.2E-54 1.4E-58 359.0 8.1 124 5-130 228-361 (364)
7 2y3z_A 3-isopropylmalate dehyd 100.0 6.6E-54 2.2E-58 357.3 8.5 122 5-129 223-347 (359)
8 1cnz_A IPMDH, IMDH, protein (3 100.0 1.6E-53 5.6E-58 355.3 8.9 124 5-130 230-360 (363)
9 3vmk_A 3-isopropylmalate dehyd 100.0 1.5E-53 5.2E-58 356.7 8.8 124 5-130 239-372 (375)
10 3dms_A Isocitrate dehydrogenas 100.0 8.2E-54 2.8E-58 363.2 7.2 124 5-130 296-427 (427)
11 3blx_B Isocitrate dehydrogenas 100.0 2E-53 6.7E-58 353.9 8.4 124 5-129 225-354 (354)
12 3u1h_A 3-isopropylmalate dehyd 100.0 2.5E-53 8.5E-58 356.7 8.8 124 5-130 246-377 (390)
13 1a05_A IPMDH, IMDH, 3-isopropy 100.0 4E-53 1.4E-57 352.4 9.7 124 5-130 225-355 (358)
14 3r8w_A 3-isopropylmalate dehyd 100.0 3E-53 1E-57 357.7 8.6 124 5-130 267-398 (405)
15 1vlc_A 3-isopropylmalate dehyd 100.0 4.8E-53 1.7E-57 352.7 8.9 122 5-129 234-362 (366)
16 2e0c_A 409AA long hypothetical 100.0 6.2E-53 2.1E-57 356.2 6.6 124 5-130 277-407 (409)
17 2iv0_A Isocitrate dehydrogenas 100.0 1E-52 3.5E-57 355.2 6.0 124 5-130 280-410 (412)
18 2d1c_A Isocitrate dehydrogenas 100.0 2.1E-52 7.2E-57 359.1 7.9 125 5-130 227-356 (496)
19 1hqs_A Isocitrate dehydrogenas 100.0 1.8E-52 6.1E-57 354.7 7.2 124 5-130 290-423 (423)
20 2d4v_A Isocitrate dehydrogenas 100.0 2.2E-52 7.6E-57 354.6 6.9 123 5-129 299-429 (429)
21 1tyo_A Isocitrate dehydrogenas 100.0 4.2E-52 1.4E-56 353.4 7.7 123 5-129 290-421 (435)
22 1w0d_A 3-isopropylmalate dehyd 100.0 1.3E-50 4.4E-55 335.2 9.5 117 5-129 215-337 (337)
23 2uxq_A Isocitrate dehydrogenas 100.0 4.1E-49 1.4E-53 332.3 6.0 122 5-129 252-397 (402)
24 1zor_A Isocitrate dehydrogenas 100.0 1.1E-48 3.7E-53 329.4 8.0 122 5-129 250-395 (399)
25 3us8_A Isocitrate dehydrogenas 100.0 5.1E-49 1.7E-53 333.8 5.1 123 5-130 276-422 (427)
26 2qfy_A Isocitrate dehydrogenas 100.0 8.7E-49 3E-53 332.4 4.7 122 5-129 271-419 (427)
27 1lwd_A Isocitrate dehydrogenas 100.0 1.7E-48 5.8E-53 329.5 6.4 122 5-129 255-406 (413)
28 4aoy_A Isocitrate dehydrogenas 100.0 3.2E-47 1.1E-51 320.9 6.5 123 5-130 253-399 (402)
29 2b0t_A NADP isocitrate dehydro 96.1 0.011 3.6E-07 52.3 6.4 98 17-114 535-649 (738)
30 1itw_A Isocitrate dehydrogenas 96.1 0.01 3.6E-07 52.4 6.4 98 17-114 539-653 (741)
31 4aty_A Terephthalate 1,2-CIS-d 95.6 0.0074 2.5E-07 49.5 3.3 65 12-83 272-340 (349)
32 2hi1_A 4-hydroxythreonine-4-ph 95.2 0.011 3.7E-07 48.6 3.1 68 8-82 256-327 (330)
33 1yxo_A 4-hydroxythreonine-4-ph 95.2 0.011 3.7E-07 48.6 3.1 66 11-83 253-322 (328)
34 3lxy_A 4-hydroxythreonine-4-ph 95.1 0.012 4.1E-07 48.4 3.1 65 13-83 260-327 (334)
35 3tsn_A 4-hydroxythreonine-4-ph 94.3 0.029 9.9E-07 46.7 3.4 45 38-83 315-362 (367)
36 1yco_A Branched-chain phosphot 36.4 16 0.00054 28.7 1.9 24 13-36 211-236 (279)
37 3bge_A Predicted ATPase; struc 30.5 52 0.0018 25.0 3.9 24 67-90 56-81 (201)
38 1nha_A TFIIF-alpha, transcript 30.1 27 0.00092 23.0 1.9 35 95-129 21-62 (82)
39 3bvr_A NOTI restriction endonu 27.5 12 0.00042 30.7 -0.1 23 9-31 70-94 (383)
40 2r9g_A AAA ATPase, central reg 27.4 41 0.0014 25.7 2.8 24 67-90 62-87 (204)
41 1vmi_A Putative phosphate acet 25.7 23 0.00079 28.5 1.2 24 13-36 272-297 (355)
42 2oxl_A Hypothetical protein YM 25.7 1.2E+02 0.0042 18.6 4.6 36 87-130 3-38 (64)
43 3ctd_A Putative ATPase, AAA fa 25.6 41 0.0014 25.8 2.5 35 67-101 84-120 (213)
44 1td9_A Phosphate acetyltransfe 24.1 26 0.00088 27.8 1.2 24 13-36 265-290 (329)
45 1v8d_A Hypothetical protein (T 24.0 97 0.0033 24.0 4.4 43 87-129 40-96 (235)
46 2af4_C Phosphate acetyltransfe 24.0 31 0.0011 27.4 1.6 25 13-37 265-291 (333)
47 1fc3_A SPO0A; response regulat 23.9 1.1E+02 0.0038 21.1 4.3 39 92-130 67-114 (120)
48 1r5j_A Putative phosphotransac 21.9 41 0.0014 26.6 1.9 25 13-37 269-295 (337)
49 3lec_A NADB-rossmann superfami 21.4 31 0.0011 26.2 1.1 28 4-31 80-107 (230)
50 3tka_A Ribosomal RNA small sub 21.3 78 0.0027 25.9 3.5 44 78-129 182-225 (347)
51 2bn5_A PSI; nuclear protein, s 21.0 82 0.0028 17.2 2.5 19 81-99 11-29 (33)
52 1pp9_E Ubiquinol-cytochrome C 20.8 40 0.0014 25.0 1.6 33 38-71 143-175 (196)
53 1i27_A Transcription factor II 20.1 27 0.00091 22.5 0.4 35 95-129 12-53 (73)
54 3cx5_E Cytochrome B-C1 complex 20.0 35 0.0012 25.0 1.1 24 47-71 142-165 (185)
No 1
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=100.00 E-value=2e-55 Score=367.08 Aligned_cols=125 Identities=32% Similarity=0.396 Sum_probs=122.1
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|+.++||||+| ||||||+|||+|||+|+|||++|||
T Consensus 239 am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~a~fEpvH-GSAPdIaGk~iANP~A~IlS~amML 317 (366)
T 3ty4_A 239 VYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGDNFVMSEPVH-GSAPDIAGRGIANPVATFRSVALML 317 (366)
T ss_dssp HHHHHHCGGGCSEEEECHHHHHHHHHHHHGGGSCGGGCCCEEECSSCEEECCSS-CCCTTTTTSSCCCCHHHHHHHHHHH
T ss_pred HHHHHhCcccCcEEEECccchHHHHHHHHHhcCchhhhcceeeCCCceEEecCC-CChhhcCCCCccCcHHHHHHHHHHH
Confidence 499999999999999999999999999 9999999999999999999999999 9999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhcC
Q psy9338 83 SHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANLK 130 (130)
Q Consensus 83 ~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l~ 130 (130)
+|||++++|++|++||.+++++|+++|+||||++||+||+++|+++|+
T Consensus 318 ~~lg~~~~A~~Ie~Av~~~l~~G~~~T~Dlgg~~~T~e~~daV~~~l~ 365 (366)
T 3ty4_A 318 EFMGHQDAAADIYTAVDKVLTEGKVLTPDLGGKSGTNEITDAVLANIH 365 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHCSSCCGGGTSCCCHHHHHHHHHHHC-
T ss_pred HHCCCHHHHHHHHHHHHHHHHcCCccCcccCCCcCHHHHHHHHHHHhh
Confidence 999999999999999999999998999999999999999999999885
No 2
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=100.00 E-value=7.4e-55 Score=361.87 Aligned_cols=126 Identities=39% Similarity=0.636 Sum_probs=121.1
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|+++++|||+||||||||+|||+|||+|+|||++|||
T Consensus 220 ~~qlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~a~fEpvH~GSAPdiAGk~iANP~A~IlS~ammL 299 (349)
T 3blx_A 220 SMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGANFGRDYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLML 299 (349)
T ss_dssp HHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEEESSCEEECCTTTTSCC--CCTTCSCCHHHHHHHHHHH
T ss_pred HHHHhhCcccccEEEECCcchHHHHHHHHhhcCCcccceEEEECCCceeEcCCCCCchhhhcCCCCCCcHHHHHHHHHHH
Confidence 499999999999999999999999999 999999999999999999999999989999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhcC
Q psy9338 83 SHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANLK 130 (130)
Q Consensus 83 ~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l~ 130 (130)
+|||++++|++|++||.+++++|+++|+||||+++|+||+++|+++|+
T Consensus 300 ~~lg~~~~A~~Ie~Av~~~l~~G~~~T~Dlgg~~~T~e~~daI~~~l~ 347 (349)
T 3blx_A 300 NHLGLNEYATRISKAVHETIAEGKHTTRDIGGSSSTTDFTNEIINKLS 347 (349)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHSSSSCBGGGTCCBCHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHcCCccCCCcCCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999998999999999999999999999873
No 3
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=100.00 E-value=7.8e-55 Score=359.89 Aligned_cols=124 Identities=33% Similarity=0.488 Sum_probs=121.5
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|+++++|||+| ||||||+|||+|||+|+|||++|||
T Consensus 206 ~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psanig~~~a~fEp~H-GSAPdiaGk~iANP~A~IlS~ammL 284 (333)
T 1x0l_A 206 AMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLAPSGNIGDTTAVFEPVH-GSAPDIAGKGIANPTAAILSAAMML 284 (333)
T ss_dssp HHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECSSCEEEEESS-CCCGGGTTSSCCCCHHHHHHHHHHH
T ss_pred HHHHhhCcccceEEEEcCccchhHhHHHHhhcCCcccceeeEECCCceEEeCCC-CChhhhcCCCCcCcHHHHHHHHHHH
Confidence 499999999999999999999999999 9999999999999999999999999 9999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhcC
Q psy9338 83 SHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANLK 130 (130)
Q Consensus 83 ~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l~ 130 (130)
+|||++++|++|++||.+++++| ++|+||||++||+||+++|+++|+
T Consensus 285 ~~lg~~~~A~~Ie~Av~~~l~~g-~~T~DlgG~~~T~e~~daV~~~l~ 331 (333)
T 1x0l_A 285 DYLGEKEAAKRVEKAVDLVLERG-PRTPDLGGDATTEAFTEAVVEALK 331 (333)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHS-CCCGGGTCCCCHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHcC-CccCccCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999 899999999999999999999873
No 4
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=100.00 E-value=2.5e-54 Score=357.21 Aligned_cols=125 Identities=25% Similarity=0.354 Sum_probs=122.2
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|+++++|||+| ||||||+|||+|||+|+|||++|||
T Consensus 203 ~~~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~a~fEp~H-GSApdiaGk~iANP~A~IlS~ammL 281 (336)
T 1wpw_A 203 AANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIGDKKALFEPVH-GAAFDIAGKNIGNPTAFLLSVSMMY 281 (336)
T ss_dssp HHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECSSCEEEEESS-CCCTTTTTSSCCCTHHHHHHHHHHH
T ss_pred HHHHhhCcccceEEEEcCcchHHHHHHHHHhcCCccccceEEECCCCceEeCCC-CCchhhCCCCCcCcHHHHHHHHHHH
Confidence 499999999999999999999999999 9999999999999999999999999 9999999999999999999999999
Q ss_pred hhcCc-------HHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhcC
Q psy9338 83 SHVNL-------QYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANLK 130 (130)
Q Consensus 83 ~~lg~-------~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l~ 130 (130)
+|||+ +++|++|++||.+++++|+++|+||||+++|+||+++|+++|.
T Consensus 282 ~~lg~~d~~~~~~~~A~~Ie~Av~~~l~~g~~~T~DlgG~~~T~e~~dav~~~l~ 336 (336)
T 1wpw_A 282 ERMYELSNDDRYIKASRALENAIYLVYKERKALTPDVGGNATTDDLINEIYNKLG 336 (336)
T ss_dssp HHHHHTTCCTHHHHHHHHHHHHHHHHHHHCSSCCGGGTCCCCHHHHHHHHHHSCC
T ss_pred HHcCccccccchHHHHHHHHHHHHHHHHcCCccCCccCCCCCHHHHHHHHHHhhC
Confidence 99999 9999999999999999998899999999999999999999873
No 5
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=100.00 E-value=4e-54 Score=358.77 Aligned_cols=124 Identities=23% Similarity=0.310 Sum_probs=120.3
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCC-cceeccCCCCccccccCCcccChHHHHHHHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPE-CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKM 81 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~-~~~fEp~h~GsapdiaGk~~ANP~a~ils~amm 81 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|++ ++||||+| ||||||+|||+|||+|+|||++||
T Consensus 227 am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~~a~fEpvH-GSAPdIAGk~iANP~A~IlS~amM 305 (361)
T 3udu_A 227 AMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEPAG-GSAPDIAHLNIANPIAQILSAALM 305 (361)
T ss_dssp HHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHCCGGGCEEEEECTTSCEEEEESS-CCCGGGTTSSCCCCHHHHHHHHHH
T ss_pred HHHHHhCcccCcEEEecchhHHHHHHHHHHhcCchhhcceeeeCCCCCeeeecCC-CChhhhcCCCccCCHHHHHHHHHH
Confidence 499999999999999999999999999 99999999999999986 59999999 999999999999999999999999
Q ss_pred hhh-cCcHHHHHHHHHHHHHHHHcCCcccCCCCC--CCCHHHHHHHHHHhcC
Q psy9338 82 LSH-VNLQYYGDMIRNAVNRVLKAGKVRTKDLGG--QSTTQEYTYAVIANLK 130 (130)
Q Consensus 82 L~~-lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG--~~tT~e~~~avi~~l~ 130 (130)
||| ||++++|++|++||++++++| ++|+|||| ++||+||+++|+++|+
T Consensus 306 L~~~lg~~~~A~~Ie~Av~~~l~~g-~~T~DlgG~~~~~T~e~~~aV~~~l~ 356 (361)
T 3udu_A 306 LKYSFKEEQAAQDIENAISLALAQG-KMTKDLNAKSYLNTDEMGDCILEILK 356 (361)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHHTT-CCCTTTCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcC-CcCcCCCCCCccCHHHHHHHHHHHHH
Confidence 999 999999999999999999999 89999999 8999999999999873
No 6
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=100.00 E-value=4.2e-54 Score=359.00 Aligned_cols=124 Identities=29% Similarity=0.405 Sum_probs=120.4
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCc---ceeccCCCCccccccCCcccChHHHHHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPEC---VVFEPGARHTYSEAVGKNVANPTAMLLCST 79 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~---~~fEp~h~GsapdiaGk~~ANP~a~ils~a 79 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|+++ ++|||+| ||||||+|||+|||+|+|||++
T Consensus 228 am~lv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~~~~~a~fEp~H-GSAPdiAGk~iANP~A~IlS~a 306 (364)
T 3flk_A 228 CARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVH-GSAPDIFGKNIANPIAMIWSGA 306 (364)
T ss_dssp HHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECTTCSSCEEEEESS-CCCTTTTTSSCCCCHHHHHHHH
T ss_pred HHHHHhCcccCcEEEecccchHHHHHHHHHhcCCcccccccccCCCCCcceEEecCC-CCchhhcCCCccCcHHHHHHHH
Confidence 499999999999999999999999999 999999999999999876 9999999 9999999999999999999999
Q ss_pred HHhhhcC-----cHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhcC
Q psy9338 80 KMLSHVN-----LQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANLK 130 (130)
Q Consensus 80 mmL~~lg-----~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l~ 130 (130)
|||+||| ++++|++|++||.+++++| ++|+||||++||+||+++|+++|+
T Consensus 307 mmL~~lg~~~~~~~~~A~~Ie~Av~~~l~~G-~~T~Dlgg~~~T~e~~~aV~~~l~ 361 (364)
T 3flk_A 307 LMLEFLGQGDERYQRAHDDMLNAIERVIADG-SVTPDMGGTLSTQQVGAAISDTLA 361 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-CCCGGGTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCcccchhHHHHHHHHHHHHHHHHcC-CCCcccCCCcCHHHHHHHHHHHHh
Confidence 9999999 9999999999999999999 799999999999999999999873
No 7
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=100.00 E-value=6.6e-54 Score=357.26 Aligned_cols=122 Identities=30% Similarity=0.435 Sum_probs=119.6
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|+++++|||+| ||||||||||+|||+|+|||++|||
T Consensus 223 ~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~~~~fEpvH-GSAPdiAGk~iANP~A~IlS~ammL 301 (359)
T 2y3z_A 223 AMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVH-GSAPDIAGKGIANPTAAILSAAMML 301 (359)
T ss_dssp HHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTSCGGGCEEEEEESSCCEEEESS-CCCGGGTTSSCSCTHHHHHHHHHHH
T ss_pred HHHHhhCcccccEEEEcCcchHHHHHHHHHhcCcccccceeEeCCCCceeecCC-CChhhhCCCCCcCCHHHHHHHHHHH
Confidence 499999999999999999999999999 9999999999999999888999999 9999999999999999999999999
Q ss_pred hh-cCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhc
Q psy9338 83 SH-VNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANL 129 (130)
Q Consensus 83 ~~-lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l 129 (130)
+| ||++++|++|++||.+++++| +|+||||++||+||+|+|+++|
T Consensus 302 ~~slg~~~~A~~Ie~Av~~~l~~g--~T~Dlgg~~~T~e~~daV~~~l 347 (359)
T 2y3z_A 302 EHAFGLVELARKVEDAVAKALLET--PPPDLGGSAGTEAFTATVLRHL 347 (359)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHS--CCGGGTCCCCHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHcC--CCCccCCCCCHHHHHHHHHHHH
Confidence 99 999999999999999999999 8999999999999999999987
No 8
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=100.00 E-value=1.6e-53 Score=355.30 Aligned_cols=124 Identities=27% Similarity=0.402 Sum_probs=119.9
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCc-ceeccCCCCccccccCCcccChHHHHHHHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPEC-VVFEPGARHTYSEAVGKNVANPTAMLLCSTKM 81 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~-~~fEp~h~GsapdiaGk~~ANP~a~ils~amm 81 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|++. ++|||+| ||||||+|||+|||+|+|||++||
T Consensus 230 ~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~~a~fEpvH-GSAPdiAGk~iANP~A~IlS~amm 308 (363)
T 1cnz_A 230 TMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAG-GSAPDIAGKNIANPIAQILSLALL 308 (363)
T ss_dssp HHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTSCEEEEESS-CCCGGGTTTTCSCCHHHHHHHHHH
T ss_pred HHHHhhCcccceEEEECCcchHHHHHHHHHhcCCCcccccceeCCCCCeEEEcCC-CChhhhcCCCccCcHHHHHHHHHH
Confidence 499999999999999999999999999 999999999999999876 8999999 999999999999999999999999
Q ss_pred hhh-cCcHHHHHHHHHHHHHHHHcCCcccCCC-CC-C-CCHHHHHHHHHHhcC
Q psy9338 82 LSH-VNLQYYGDMIRNAVNRVLKAGKVRTKDL-GG-Q-STTQEYTYAVIANLK 130 (130)
Q Consensus 82 L~~-lg~~~~A~~i~~Av~~~l~~g~~~T~Dl-gG-~-~tT~e~~~avi~~l~ 130 (130)
|+| ||++++|++|++||.+++++| ++|+|| || + ++|+||+++|+++|+
T Consensus 309 L~~~lg~~~~A~~Ie~Av~~~l~~g-~~T~Dl~gG~~~~~T~e~~daV~~~l~ 360 (363)
T 1cnz_A 309 LRYSLDANDAATAIEQAINRALEEG-VRTGDLARGAAAVSTDEMGDIIARYVA 360 (363)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHTT-CCCGGGTTTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHhcC-CcCcccCCCCCCCCHHHHHHHHHHHHh
Confidence 999 999999999999999999999 899999 78 6 899999999999873
No 9
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=100.00 E-value=1.5e-53 Score=356.67 Aligned_cols=124 Identities=22% Similarity=0.321 Sum_probs=119.7
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCc-ceeccCCCCccccccCCcccChHHHHHHHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPEC-VVFEPGARHTYSEAVGKNVANPTAMLLCSTKM 81 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~-~~fEp~h~GsapdiaGk~~ANP~a~ils~amm 81 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|++. +||||+| ||||||||||+|||+|+|||++||
T Consensus 239 am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~~a~fEpvH-GSAPdIAGk~iANP~A~IlS~amM 317 (375)
T 3vmk_A 239 TMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFGMYEPAG-GSAPDIAGQGIANPVAQILSAALL 317 (375)
T ss_dssp HHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTSCEEEEESS-CCCTTTTTSSCSCCHHHHHHHHHH
T ss_pred HHHHHhCcccCcEEEECchhHHHHHHHHHHhcCCccccceeeeCCCCceEEecCC-CCchhccCCCccCcHHHHHHHHHH
Confidence 499999999999999999999999999 999999999999999985 9999999 999999999999999999999999
Q ss_pred hhh-cCcHHHHHHHHHHHHHHHHcCCcccCCC-C---C--CCCHHHHHHHHHHhcC
Q psy9338 82 LSH-VNLQYYGDMIRNAVNRVLKAGKVRTKDL-G---G--QSTTQEYTYAVIANLK 130 (130)
Q Consensus 82 L~~-lg~~~~A~~i~~Av~~~l~~g~~~T~Dl-g---G--~~tT~e~~~avi~~l~ 130 (130)
|+| ||++++|++|++||++++++| ++|+|| | | ++||+||+++|+++|+
T Consensus 318 L~~~lg~~~~A~~Ie~AV~~~l~~G-~~T~Dl~g~~~G~~~~~T~e~~~aV~~~l~ 372 (375)
T 3vmk_A 318 LRHSLKLEDAALAIEAAVSKALSDG-YLTCELLPASERSQAKSTSQMGDYIAQAIA 372 (375)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHTT-CCCGGGSCGGGGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHcC-CCCchhccCCCCCCccCHHHHHHHHHHHHh
Confidence 999 999999999999999999999 799999 5 6 8999999999999873
No 10
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=100.00 E-value=8.2e-54 Score=363.22 Aligned_cols=124 Identities=23% Similarity=0.314 Sum_probs=120.5
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|++++||||+| ||||||||||+|||+|+|||++|||
T Consensus 296 amqlv~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~a~fEpvH-GSAPdIAGk~iANP~A~IlS~amML 374 (427)
T 3dms_A 296 LQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSVAMFEATH-GTAPKYAGKDYVNPGSEILSAEMML 374 (427)
T ss_dssp HHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCTTTCEEEEECSSCEEEEECS-CCCGGGTTSSCSCCHHHHHHHHHHH
T ss_pred HHHHhhCcccceEEEEcccccHHHHHHHHHhcCCccccceeeeCCCcceEEecc-CChhhhcCCCcCCcHHHHHHHHHHH
Confidence 489999999999999999999999999 9999999999999999999999999 9999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHHHHHHHHcCCcccCCCCC------CCCHHHHHHHHHHhcC
Q psy9338 83 SHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGG------QSTTQEYTYAVIANLK 130 (130)
Q Consensus 83 ~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG------~~tT~e~~~avi~~l~ 130 (130)
+|||+.++|++|++||.+++++| ++|+|||| ++||+||+++|+++|+
T Consensus 375 ~~lg~~~~A~~Ie~AV~~vl~~G-~~T~Dlgg~~~g~~~~~T~e~~daV~~~l~ 427 (427)
T 3dms_A 375 RHLGWTEAADVIISAMEKSIKQK-RVTYDFARLMEGATQVSCSGFGQVLIENME 427 (427)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT-EECHHHHTTSSSCEECCHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHHHHHHHHcC-CcchhhccccCCCCccCHHHHHHHHHHhhC
Confidence 99999999999999999999999 78999986 6899999999999985
No 11
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=100.00 E-value=2e-53 Score=353.88 Aligned_cols=124 Identities=33% Similarity=0.463 Sum_probs=121.4
Q ss_pred cchhhhcCCCCc--eeeeCCcchhhhhhh--hh-cccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHH
Q psy9338 5 ELDLKEDSKQLS--APSVKSKQNNIWLDL--RL-VGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCST 79 (130)
Q Consensus 5 ~~~lv~~P~~fd--Viv~~Nl~GDIlsd~--~l-~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~a 79 (130)
+||||++|++|| ||||+|||||||||+ ++ +||+||+||+|+|+++++|||+| ||||||+|||+|||+|+|||++
T Consensus 225 ~m~lv~~P~~FD~~Vivt~NlfGDIlSD~aa~l~~GslGl~pSanig~~~a~fEp~H-GSAPdiAGk~iANP~A~IlS~a 303 (354)
T 3blx_B 225 VLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPSANIGHKISIFEAVH-GSAPDIAGQDKANPTALLLSSV 303 (354)
T ss_dssp HHHHHHCGGGGTTEEEEECHHHHHHHHHHHHHHHTSSGGGCEEEEEESSCEEEEECS-CCCGGGTTTTCCCTHHHHHHHH
T ss_pred HHHHhhChhhCCceEEEecCcccchhHHHHHhhccCCccccceeEECCCceEEecCC-CChhhhcCCCccCcHHHHHHHH
Confidence 499999999999 999999999999999 99 99999999999999999999999 9999999999999999999999
Q ss_pred HHhhhcCcHHHHHHHHHHHHHHHHcC-CcccCCCCCCCCHHHHHHHHHHhc
Q psy9338 80 KMLSHVNLQYYGDMIRNAVNRVLKAG-KVRTKDLGGQSTTQEYTYAVIANL 129 (130)
Q Consensus 80 mmL~~lg~~~~A~~i~~Av~~~l~~g-~~~T~DlgG~~tT~e~~~avi~~l 129 (130)
|||+|||++++|++|++||.+++++| +++|+||||+++|+||+|+|+++|
T Consensus 304 mmL~~lg~~~~A~~Ie~Av~~~l~~g~~~~T~DlgG~~~T~e~~dav~~~l 354 (354)
T 3blx_B 304 MMLNHMGLTNHADQIQNAVLSTIASGPENRTGDLAGTATTSSFTEAVIKRL 354 (354)
T ss_dssp HHHHHHTCHHHHHHHHHTHHHHHTSSTTSSCGGGTCCCCHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHcCCCccCCCcCCCCCHHHHHHHHHhhC
Confidence 99999999999999999999999999 599999999999999999999876
No 12
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=100.00 E-value=2.5e-53 Score=356.66 Aligned_cols=124 Identities=29% Similarity=0.401 Sum_probs=119.8
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCC-cceeccCCCCccccccCCcccChHHHHHHHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPE-CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKM 81 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~-~~~fEp~h~GsapdiaGk~~ANP~a~ils~amm 81 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|++ ++||||+| ||||||||||+|||+|+|||++||
T Consensus 246 amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~~a~fEpvH-GSAPDIAGk~iANP~A~IlS~amM 324 (390)
T 3u1h_A 246 AMQLIRNPRQFDVIVTENMFGDILSDEASMITGSLGMLPSASLSTDGLGLYEPVH-GSAPDIAGKGIANPLATILSAAMM 324 (390)
T ss_dssp HHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCTTTCEEEEEETTSCEEEEESS-CCCTTTTTSSCSCTHHHHHHHHHH
T ss_pred HHHHHhCcccCcEEEecccchHHHHHHHHHhcCchhhcceeeecCCCCeeEecCC-CChhhhcCCCcCCcHHHHHHHHHH
Confidence 499999999999999999999999999 99999999999999984 89999999 999999999999999999999999
Q ss_pred hhh-cCcHHHHHHHHHHHHHHHHcCCcccCCC--CC--CCCHHHHHHHHHHhcC
Q psy9338 82 LSH-VNLQYYGDMIRNAVNRVLKAGKVRTKDL--GG--QSTTQEYTYAVIANLK 130 (130)
Q Consensus 82 L~~-lg~~~~A~~i~~Av~~~l~~g~~~T~Dl--gG--~~tT~e~~~avi~~l~ 130 (130)
||| ||++++|++|++||++++++| ++|+|| || ++||+||+++|+++|+
T Consensus 325 L~~~lg~~~~A~~Ie~AV~~vl~~G-~~T~Dl~~gG~~~~~T~e~~daV~~~l~ 377 (390)
T 3u1h_A 325 LRYSFGLEEEAKAIEKAVEKVLAEG-YRTADIAKPGGKYVSTTEMTDEVKAAVV 377 (390)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHT-CCBTTTSCSSCCCBCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcC-CcChhhccCCCCccCHHHHHHHHHHHHh
Confidence 999 999999999999999999999 899999 66 8999999999999873
No 13
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=100.00 E-value=4e-53 Score=352.42 Aligned_cols=124 Identities=27% Similarity=0.403 Sum_probs=119.8
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|+.+++|||+| ||||||+|||+|||+|+|||++|||
T Consensus 225 ~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~~~fEpvH-GSAPdiAGk~iANP~A~IlS~ammL 303 (358)
T 1a05_A 225 AMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLGEGRAMYEPIH-GSAPDIAGQDKANPLATILSVAMML 303 (358)
T ss_dssp HHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEECSSCEEEEESS-CCCGGGTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHhCCCcccEEEecCcccHhHHHHHHhhcCCccccceeeeCCCceeeecCC-CChhHhcCCCccCcHHHHHHHHHHH
Confidence 499999999999999999999999999 9999999999999998889999999 9999999999999999999999999
Q ss_pred hh-cCcHHHHHHHHHHHHHHHHcCCcccCCCCC---C-CCHHHHHHHHHHhcC
Q psy9338 83 SH-VNLQYYGDMIRNAVNRVLKAGKVRTKDLGG---Q-STTQEYTYAVIANLK 130 (130)
Q Consensus 83 ~~-lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG---~-~tT~e~~~avi~~l~ 130 (130)
+| ||++++|++|++||.+++++| ++|+||+| + ++|+||+++|+++|+
T Consensus 304 ~~~lg~~~~A~~Ie~Av~~~l~~g-~~T~Dl~g~g~~~~~T~e~~daV~~~l~ 355 (358)
T 1a05_A 304 RHSLNAEPWAQRVEAAVQRVLDQG-LRTADIAAPGTPVIGTKAMGAAVVNALN 355 (358)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHHTT-CCCGGGCCTTSCCCCHHHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHHHHHHHHcC-CcCcccccCCCCCcCHHHHHHHHHHHhh
Confidence 99 999999999999999999999 89999954 6 899999999999885
No 14
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=100.00 E-value=3e-53 Score=357.68 Aligned_cols=124 Identities=26% Similarity=0.350 Sum_probs=120.5
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCC-cceeccCCCCccccccCCcccChHHHHHHHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPE-CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKM 81 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~-~~~fEp~h~GsapdiaGk~~ANP~a~ils~amm 81 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|++ ++||||+| ||||||+|||+|||+|+|||++||
T Consensus 267 amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~~a~fEpvH-GSAPDIAGk~iANP~A~IlS~amM 345 (405)
T 3r8w_A 267 AMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPGLFEPIH-GSAPDIAGQDKANPLATILSAAML 345 (405)
T ss_dssp HHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCGGGCEEEEECSSSCCEEEESS-CCCGGGTTTTCCCCHHHHHHHHHH
T ss_pred HHHHHhChhhCcEEeecchhhHHHHHHHHHhcCcccccceeeecCCCCeEEecCC-CChhhhCCCCCCCcHHHHHHHHHH
Confidence 499999999999999999999999999 99999999999999986 69999999 999999999999999999999999
Q ss_pred hhh-cCcHHHHHHHHHHHHHHHHcCCcccCCC--CCC--CCHHHHHHHHHHhcC
Q psy9338 82 LSH-VNLQYYGDMIRNAVNRVLKAGKVRTKDL--GGQ--STTQEYTYAVIANLK 130 (130)
Q Consensus 82 L~~-lg~~~~A~~i~~Av~~~l~~g~~~T~Dl--gG~--~tT~e~~~avi~~l~ 130 (130)
|+| ||++++|++|++||++++++| ++|+|| ||+ ++|+||+++|+++|+
T Consensus 346 L~~slg~~~~A~~Ie~AV~~~l~~G-~~T~Dl~~gG~~~~~T~e~~~aV~~~l~ 398 (405)
T 3r8w_A 346 LKYGLGEEKAAKRIEDAVLVALNNG-FRTGDIYSAGTKLVGCKEMGEEVLKSVD 398 (405)
T ss_dssp HHHTTCCTTHHHHHHHHHHHHHHTT-EECGGGCCTTSEECCHHHHHHHHHHHHC
T ss_pred HHhhCccHHHHHHHHHHHHHHHHcC-CcCccccCCCCcccCHHHHHHHHHHHHH
Confidence 999 999999999999999999999 899999 998 999999999999874
No 15
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=100.00 E-value=4.8e-53 Score=352.74 Aligned_cols=122 Identities=26% Similarity=0.391 Sum_probs=119.1
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+| ++++|||+| ||||||||||+|||+|+|||++|||
T Consensus 234 ~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig-~~alfEpvH-GSAPdIAGk~iANP~A~IlS~ammL 311 (366)
T 1vlc_A 234 AMQLILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASFG-DKNLYEPAG-GSAPDIAGKNIANPIAQILSLAMML 311 (366)
T ss_dssp HHHHHHCGGGCSEEEECHHHHHHHHHHHTTSSSCGGGCEEEEES-SSEEEEESS-CCCTTTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHhhCcccceEEEEcchhHHHHHHHHHHhcCccccccEeeeC-CceeeecCC-CchhhcCCCCccCcHHHHHHHHHHH
Confidence 499999999999999999999999999 999999999999999 889999999 9999999999999999999999999
Q ss_pred hh-cCcHHHHHHHHHHHHHHHHcCCcccCCCC---CC-CCHHHHHHHHHHhc
Q psy9338 83 SH-VNLQYYGDMIRNAVNRVLKAGKVRTKDLG---GQ-STTQEYTYAVIANL 129 (130)
Q Consensus 83 ~~-lg~~~~A~~i~~Av~~~l~~g~~~T~Dlg---G~-~tT~e~~~avi~~l 129 (130)
+| ||++++|++|++||.+++++| ++|+||| |+ +||+||+++|+++|
T Consensus 312 ~~slg~~~~A~~Ie~Av~~~l~~g-~~T~Dlg~~gg~~~~T~e~~daV~~~l 362 (366)
T 1vlc_A 312 EHSFGMVEEARKIERAVELVIEEG-YRTRDIAEDPEKAVSTSQMGDLICKKL 362 (366)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHTT-CCCGGGCSSGGGCCCHHHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHHHHHcC-CcccccccCCCCCcCHHHHHHHHHHHH
Confidence 99 999999999999999999999 8999998 67 89999999999987
No 16
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=100.00 E-value=6.2e-53 Score=356.25 Aligned_cols=124 Identities=24% Similarity=0.311 Sum_probs=119.9
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|+++++|||+| ||||||||||+|||+|+|||++|||
T Consensus 277 ~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~~a~fEp~H-GSAPdiAGk~iANP~A~IlS~ammL 355 (409)
T 2e0c_A 277 FQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGGANIGDEGGMFEAIH-GTAPKYAGKNVANPTGIIKAGELML 355 (409)
T ss_dssp HHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEEETTEEEEEESS-CCCGGGTTTTCSCTHHHHHHHHHHH
T ss_pred HHHHhhCcccccEEEECCcchHHHHHHHHHhcCCcccCceEEECCCceEEecCC-CChhhhcCCcccCcHHHHHHHHHHH
Confidence 499999999999999999999999999 9999999999999999999999999 9999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHHHHHHHHcCCcccCCCCC-----CCCHHHHHHHHHHhcC
Q psy9338 83 SHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGG-----QSTTQEYTYAVIANLK 130 (130)
Q Consensus 83 ~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG-----~~tT~e~~~avi~~l~ 130 (130)
||||++++|++|++||.+++++| ++|+|||| .++|+||+++|+++|+
T Consensus 356 ~~lg~~~~A~~Ie~Av~~~l~~g-~~T~Dl~g~~g~~~~~T~e~~daV~~~l~ 407 (409)
T 2e0c_A 356 RWMGWNEAADLIEKAINMAIRDK-KVTQDIARFMGVKALGTKEYADELIKIMD 407 (409)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTT-CCCHHHHHHHTSCCCCHHHHHHHHHHHHT
T ss_pred HhCCCHHHHHHHHHHHHHHHHcC-CccccccccCCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999999999999 68999964 6899999999999875
No 17
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1e-52 Score=355.20 Aligned_cols=124 Identities=26% Similarity=0.412 Sum_probs=119.7
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|+++++|||+| ||||||||||+|||+|+|||++|||
T Consensus 280 ~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapsanig~~~a~fEp~H-GSAPdiAGk~iANP~A~IlS~amML 358 (412)
T 2iv0_A 280 FQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNIGDGIGVFEPVH-GSAPKYAGQNKVNPTAEILTGALMF 358 (412)
T ss_dssp HHHHHHSGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCEEEEEETTEEEEEESS-CCCSTTTTSSCSCCHHHHHHHHHHH
T ss_pred HHHHhhCcccccEEEECCcchHHHHHHHHHhcCCccccceEEECCCceEEeCCC-CChhhcCCCcccCcHHHHHHHHHHH
Confidence 399999999999999999999999999 9999999999999999999999999 9999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHHHHHHHHcCCcccCCCC---C--CCCHHHHHHHHHHhcC
Q psy9338 83 SHVNLQYYGDMIRNAVNRVLKAGKVRTKDLG---G--QSTTQEYTYAVIANLK 130 (130)
Q Consensus 83 ~~lg~~~~A~~i~~Av~~~l~~g~~~T~Dlg---G--~~tT~e~~~avi~~l~ 130 (130)
||||++++|++|++||.+++++| ++|+||| | .++|+||+++|+++|+
T Consensus 359 ~~lg~~~~A~~Ie~Av~~~l~~g-~~T~Dl~~~~G~~~~~T~e~~daV~~~l~ 410 (412)
T 2iv0_A 359 EYIGWKDASEMIKKAVEMTISSG-IVTYDIHRHMGGTKVGTREFAEAVVENLQ 410 (412)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTT-EECHHHHHHHCSEECCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHcC-CcccccccccCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999999999999 7899996 5 6899999999999873
No 18
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=2.1e-52 Score=359.08 Aligned_cols=125 Identities=34% Similarity=0.452 Sum_probs=122.2
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|++++||||+| ||||||+|||+|||+|+|||++|||
T Consensus 227 amqLV~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSanig~~~a~FEpvH-GSAPDIAGk~iANP~A~IlSaamML 305 (496)
T 2d1c_A 227 AHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEVAIFEAVH-GSAPKYAGKNVINPTAVLLSAVMML 305 (496)
T ss_dssp HHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTTCGGGCEEEEECSSCEEEEESS-CCCTTTTTSSCCCCHHHHHHHHHHH
T ss_pred HHHHhhCcCcceEEEECCcchHHHHHHHHHhcCCcccCcEEEECCCCceeeCCC-CchhhhcCCCccCcHHHHHHHHHHH
Confidence 499999999999999999999999999 9999999999999999999999999 9999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHHHHHHHHcCCcccCCCCC---CCCHHHHHHHHHHhcC
Q psy9338 83 SHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGG---QSTTQEYTYAVIANLK 130 (130)
Q Consensus 83 ~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG---~~tT~e~~~avi~~l~ 130 (130)
+|||++++|++|++||.+++++|+++|+|||| +++|+||+++|+++|+
T Consensus 306 ~hlG~~~~A~~Ie~AV~~vl~~G~~~T~DLgg~~~~~sT~e~~daV~~~L~ 356 (496)
T 2d1c_A 306 RYLEEFATADLIENALLYTLEEGRVLTGDVVGYDRGAKTTEYTEAIIQNLG 356 (496)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTSSCBHHHHCTTTCBCHHHHHHHHHHTTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHcCCeeccccCCCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999 8999999999999874
No 19
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=100.00 E-value=1.8e-52 Score=354.66 Aligned_cols=124 Identities=19% Similarity=0.332 Sum_probs=120.1
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCC--CCcceeccCCCCccccccCCcccChHHHHHHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWS--PECVVFEPGARHTYSEAVGKNVANPTAMLLCSTK 80 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig--~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~am 80 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+| +++++|||+| ||||||||||+|||+|+|||++|
T Consensus 290 ~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGl~pSanigp~~~~alfEp~H-GSAPdiAGk~iANP~A~IlS~am 368 (423)
T 1hqs_A 290 LQQILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATH-GTAPKYAGLDKVNPSSVILSGVL 368 (423)
T ss_dssp HHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCTTTCEEEEECTTTCCEEEEESC-CCCGGGTTTTCSCCHHHHHHHHH
T ss_pred HHHHhhCCCCccEEEECCcchHHHHHHHHhhcCCcccCccceecCCCCceEEecCC-CChhhhCCCCCcCcHHHHHHHHH
Confidence 399999999999999999999999999 999999999999999 7789999999 99999999999999999999999
Q ss_pred HhhhcCcHHHHHHHHHHHHHHHHcCCcccCCCCC------CCCHHHHHHHHHHhcC
Q psy9338 81 MLSHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGG------QSTTQEYTYAVIANLK 130 (130)
Q Consensus 81 mL~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG------~~tT~e~~~avi~~l~ 130 (130)
||+|||++++|++|++||.+++++| ++|+|||| .++|+||+++|+++|+
T Consensus 369 ML~hlg~~~~A~~Ie~Av~~~l~~g-~~T~Dl~g~~~g~~~~~T~e~~daV~~~l~ 423 (423)
T 1hqs_A 369 LLEHLGWNEAADLVIKSMEKTIASK-VVTYDFARLMDGATEVKCSEFGEELIKNMD 423 (423)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTT-EECHHHHTTSSSCEECCHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHcC-CcccccccccCCCCCcCHHHHHHHHHHhhC
Confidence 9999999999999999999999999 78999976 6899999999999986
No 20
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=100.00 E-value=2.2e-52 Score=354.59 Aligned_cols=123 Identities=27% Similarity=0.358 Sum_probs=119.0
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|+++++|||+| ||||||+|||+|||+|+|||++|||
T Consensus 299 ~mqlv~~P~~fDVivt~NlfGDILSD~aA~l~GslGl~pSanig~~~a~fEpvH-GSAPdiAGk~iANP~A~IlS~amML 377 (429)
T 2d4v_A 299 LQQILLRPEDYSVVATLNLNGDYVSDALAAEVGGIGMAPGANLSDTHAIFEATH-GTAPDIAGQGKANPSSLILSAVMML 377 (429)
T ss_dssp HHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCCCEEECSSCEEEECSC-CCCTTTTTTTCCCCHHHHHHHHHHH
T ss_pred HHHHhhCcccCcEEEECCcccHHHHHHHHHhcCCHhhcCeeEECCCceEEecCC-CChhHhcCCCCcCcHHHHHHHHHHH
Confidence 499999999999999999999999999 9999999999999999999999999 9999999999999999999999999
Q ss_pred hhcCcHHHHHHHHHHHHHHHHcCCcccCCCCC------CCCHHHHHHHHHHhc
Q psy9338 83 SHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGG------QSTTQEYTYAVIANL 129 (130)
Q Consensus 83 ~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG------~~tT~e~~~avi~~l 129 (130)
||||++++|++|++||.+++++| .+|+|||| .++|+||+++|+++|
T Consensus 378 ~hlg~~~~A~~Ie~Av~~~l~~g-~~T~Dlg~~~~g~~~~~T~e~~daV~~~l 429 (429)
T 2d4v_A 378 EHLGWGEAAQAIVAAMNATIAAG-EVTGDLAALRGDVPALSTTEFTAALIRRF 429 (429)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTT-CEEHHHHTTCTTCCEECHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHHHHcC-CccccccccCCCCCCcCHHHHHHHHHhhC
Confidence 99999999999999999999999 78999974 589999999999875
No 21
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=100.00 E-value=4.2e-52 Score=353.37 Aligned_cols=123 Identities=23% Similarity=0.317 Sum_probs=119.5
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCcceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|+++++|||+| ||||||||||+|||+|+|||++|||
T Consensus 290 ~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapSanig~~~a~fEpvH-GSAPdiAGk~iANP~A~IlS~amML 368 (435)
T 1tyo_A 290 LQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMNMGDGIAVAEPVH-GTAPKYAGKDLINPSAEILSASLLI 368 (435)
T ss_dssp HHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECSSCEEEEESS-CCCGGGTTSSCSCCHHHHHHHHHHH
T ss_pred HHHHhhCCCCceEEEEcccchHHHHHHHHhhcCCcccCceeeECCCceeeecCC-CChHHhcCCCCcCcHHHHHHHHHHH
Confidence 399999999999999999999999999 9999999999999999999999999 9999999999999999999999999
Q ss_pred -hhcCcHHHHHHHHHHHHHHHHcCCcccCCCCC------CCCHHHHHHHHHHhc
Q psy9338 83 -SHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGG------QSTTQEYTYAVIANL 129 (130)
Q Consensus 83 -~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG------~~tT~e~~~avi~~l 129 (130)
+|||++++|++|++||.+++++| .+|+|||| .+||+||+++|+++|
T Consensus 369 ~~hlg~~~~A~~Ie~Av~~~l~~g-~~T~Dlgg~~~g~~~~~T~e~~daV~~~l 421 (435)
T 1tyo_A 369 GEFMGWREVKSIVEYAIRKAVQSK-KVTQDLARHMPGVQPLRTSEYTETLIAYI 421 (435)
T ss_dssp HTTSCCHHHHHHHHHHHHHHHHTT-CCBHHHHTTSTTCCCBCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHcC-CcCccccccCCCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999999 68999986 679999999999987
No 22
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=100.00 E-value=1.3e-50 Score=335.16 Aligned_cols=117 Identities=22% Similarity=0.347 Sum_probs=113.3
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCC---CcceeccCCCCccccccCCcccChHHHHHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSP---ECVVFEPGARHTYSEAVGKNVANPTAMLLCST 79 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~---~~~~fEp~h~GsapdiaGk~~ANP~a~ils~a 79 (130)
+||||++|++||||||+|||||||||+ +++||+||+||+|+|+ .+++|||+| ||||||+|||+|||+|+|||++
T Consensus 215 ~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psanig~~~~~~a~fEp~H-GSAPdiAGk~iANP~A~IlS~a 293 (337)
T 1w0d_A 215 TIHMITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEPVH-GSAPDIAGQGIADPTAAIMSVA 293 (337)
T ss_dssp HHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECTTCSSCEEEEESS-CCCGGGTTSSCSCCHHHHHHHH
T ss_pred HHHHhhCcccccEEEECcchhHHHHHHHhhhcCCcccCceeEeCCCCCCceEEecCC-CChhhhCCCCCcCCHHHHHHHH
Confidence 499999999999999999999999999 9999999999999998 568999999 9999999999999999999999
Q ss_pred HHhhhcCcHHHHHHHHHHHHHHHHcCCcccCCCCC-CCCHHHHHHHHHHhc
Q psy9338 80 KMLSHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGG-QSTTQEYTYAVIANL 129 (130)
Q Consensus 80 mmL~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG-~~tT~e~~~avi~~l 129 (130)
|||||||++++|++|++||.+++++| || ++||+||+++|+++|
T Consensus 294 mmL~~lg~~~~A~~Ie~Av~~~l~~g-------gg~~~~T~e~~~av~~~l 337 (337)
T 1w0d_A 294 LLLSHLGEHDAAARVDRAVEAHLATR-------GSERLATSDVGERIAAAL 337 (337)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHC-------TTCCCCHHHHHHHHHHTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHcC-------CCCCcCHHHHHHHHHhhC
Confidence 99999999999999999999999998 77 899999999999876
No 23
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=100.00 E-value=4.1e-49 Score=332.27 Aligned_cols=122 Identities=16% Similarity=0.198 Sum_probs=116.6
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCc-ceeccCCCCccccc-----cCCcc-cChHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPEC-VVFEPGARHTYSEA-----VGKNV-ANPTAML 75 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~-~~fEp~h~Gsapdi-----aGk~~-ANP~a~i 75 (130)
+||||++|++| ||||+|||||||||+ +++||+||+||+|+|++. ++|||+| |||||| +|||+ |||+|+|
T Consensus 252 ~mqlv~~P~~f-Vivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~lfEpvH-GSAPdi~~~~~aGk~~~ANP~A~I 329 (402)
T 2uxq_A 252 VARMMKTEGGM-LWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYGYFEYEAAH-GTVQRHYYQHLKGERTSTNPVALI 329 (402)
T ss_dssp HHHHTTCCCCS-EEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCEEEECCS-CCCHHHHHHHHTTCCCCCCCHHHH
T ss_pred HHHHccCCCce-EEEEcccchHHHHHHHHHhcCCccccccceecCCCCeEEeCCC-CChhhhhhhhhcCCCcccCcHHHH
Confidence 49999999999 999999999999999 999999999999999987 8999999 999998 99996 9999999
Q ss_pred HHHHHHhhhcCcHH-------HHHHHHHHHHHHHHcCCcccCCCCC--------CCCHHHHHHHHHHhc
Q psy9338 76 LCSTKMLSHVNLQY-------YGDMIRNAVNRVLKAGKVRTKDLGG--------QSTTQEYTYAVIANL 129 (130)
Q Consensus 76 ls~ammL~~lg~~~-------~A~~i~~Av~~~l~~g~~~T~DlgG--------~~tT~e~~~avi~~l 129 (130)
||++|||+|||+.+ +|++|++||.+++++| ++|+|||| +++|+||+|+|+++|
T Consensus 330 lS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G-~~T~Dlgg~~~g~~~~~~~T~e~~daI~~~l 397 (402)
T 2uxq_A 330 YAWTGALRKRGELDGTPDLCAFCDSLEAITIECIESG-YMTGDLARICEPAAIKVLDSIEFIDELGKRL 397 (402)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTT-EECHHHHTTCSSCCSEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcC-CcCccccccCCCCCCCCcCHHHHHHHHHHHH
Confidence 99999999999876 7999999999999999 89999976 589999999999987
No 24
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-48 Score=329.41 Aligned_cols=122 Identities=24% Similarity=0.293 Sum_probs=115.8
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCc-ceeccCCCCcccc-----ccCCcc-cChHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPEC-VVFEPGARHTYSE-----AVGKNV-ANPTAML 75 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~-~~fEp~h~Gsapd-----iaGk~~-ANP~a~i 75 (130)
+||||++|++| ||||+|||||||||+ +++||+||+||+|+|++. ++|||+| ||||| |+|||+ |||+|+|
T Consensus 250 ~mqlv~~P~~f-Vivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~~fEpvH-GSAPdi~~~~iaGk~~~ANP~A~I 327 (399)
T 1zor_A 250 AAQILRSEGGM-LWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDGVYEFEAAH-GTVRRHYYRYLKGEKTSTNPTASI 327 (399)
T ss_dssp HHHHHHSCCCS-EEEECHHHHHHHHHHHHHHHCCGGGEEEEEECTTCCEEEEESS-CCCHHHHHHHTTTCCCCCCCHHHH
T ss_pred HHHhccCCCce-EEEEccchHHHHHHHHHHhcCCccccceeEecCCCCeEEeCCC-CcccccchhhhcCCCCccCcHHHH
Confidence 49999999999 999999999999999 999999999999999987 7999999 99999 799995 9999999
Q ss_pred HHHHHHhhhcCcH-------HHHHHHHHHHHHHHHcCCcccCCCCC--------CCCHHHHHHHHHHhc
Q psy9338 76 LCSTKMLSHVNLQ-------YYGDMIRNAVNRVLKAGKVRTKDLGG--------QSTTQEYTYAVIANL 129 (130)
Q Consensus 76 ls~ammL~~lg~~-------~~A~~i~~Av~~~l~~g~~~T~DlgG--------~~tT~e~~~avi~~l 129 (130)
||++|||+|||+. ++|++|++||.+++++| ++|+|||| .+||+||+++|+++|
T Consensus 328 lS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~g-~~T~Dlgg~~~g~~~~~~~T~e~~daV~~~l 395 (399)
T 1zor_A 328 FAWTGAIRKRGELDGTPEVCEFADKLEKAVINTIESG-VITKDLQPFTEPPIDKYVTLEEFIDEVKKNL 395 (399)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTT-CCCGGGGGGCSSCCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHcC-CcCccccccCCCCCCCCCCHHHHHHHHHHHH
Confidence 9999999999976 57999999999999999 79999975 489999999999987
No 25
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=100.00 E-value=5.1e-49 Score=333.84 Aligned_cols=123 Identities=19% Similarity=0.220 Sum_probs=117.8
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCc--ceeccCCCCcccc-----ccCCcc-cChHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPEC--VVFEPGARHTYSE-----AVGKNV-ANPTAM 74 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~--~~fEp~h~Gsapd-----iaGk~~-ANP~a~ 74 (130)
+||||++|++| ||||+|||||||||+ +++||+||+||+|+|++. ++|||+| ||||| |+|||+ |||+|+
T Consensus 276 ~mqlv~~P~~F-Vivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~a~fEp~H-GSAPd~~~~~iAGk~i~ANP~A~ 353 (427)
T 3us8_A 276 VASALKWSGGY-VWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAAH-GTVTRHYRQHQKGEETSTNSIAS 353 (427)
T ss_dssp HHHHHHSCCCE-EEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCCEEEECCS-CCCHHHHHHHHTTCCCCCCCHHH
T ss_pred HHHHhhCCCCc-EEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCeEEEeCCC-CCcCCccchhcCCCCceeCHHHH
Confidence 49999999999 999999999999999 999999999999999875 9999999 99999 999998 999999
Q ss_pred HHHHHHHhhhcCc-------HHHHHHHHHHHHHHHHcCCcccCCCCC-------CCCHHHHHHHHHHhcC
Q psy9338 75 LLCSTKMLSHVNL-------QYYGDMIRNAVNRVLKAGKVRTKDLGG-------QSTTQEYTYAVIANLK 130 (130)
Q Consensus 75 ils~ammL~~lg~-------~~~A~~i~~Av~~~l~~g~~~T~DlgG-------~~tT~e~~~avi~~l~ 130 (130)
|||++|||+|+|+ .++|++|++||.+++++| ++|+|||| .++|+||+|+|+++|+
T Consensus 354 IlS~ammL~hlG~~~~~~~l~~~A~~Ie~Av~~~l~~g-~~T~Dlgg~~~~~~~~~~T~e~~daV~~~l~ 422 (427)
T 3us8_A 354 IFAWTRGLAHRAKLDGNAELAKFSETLERVCVDTVESG-FMTKDLALLIGPDQPWLSTTGFLDKIDENLR 422 (427)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTT-CCBHHHHHHHCTTCCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHcC-CcCcccccccccCCcccCHHHHHHHHHHHHH
Confidence 9999999999997 789999999999999999 79999988 7999999999999873
No 26
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=100.00 E-value=8.7e-49 Score=332.40 Aligned_cols=122 Identities=19% Similarity=0.241 Sum_probs=116.2
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCc--ceeccCCCCccc-----cccCCcc-cChHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPEC--VVFEPGARHTYS-----EAVGKNV-ANPTAM 74 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~--~~fEp~h~Gsap-----diaGk~~-ANP~a~ 74 (130)
+||||++|++| ||||+|||||||||+ +++||+||+||+|+|++. ++|||+| |||| ||||||+ |||+|+
T Consensus 271 amqlV~~P~~F-Vivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvH-GSAPdi~~~diAGk~~~ANP~A~ 348 (427)
T 2qfy_A 271 VAQMIKSKGGF-IMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAH-GTVTRHYRKYQKGEETSTNSIAS 348 (427)
T ss_dssp HHHHHHSCEEE-EEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCCEEEECCS-CCCHHHHHHHHTTCCCCCCCHHH
T ss_pred HHHHHhCCCce-EEEECccchHHHHHHHHHhcCcccccceeEeCCCCceeEecCCC-CCcccccchhhcCCCCccCcHHH
Confidence 49999999999 999999999999999 999999999999999986 8999999 9999 7899995 999999
Q ss_pred HHHHHHHhhhcCcH-------HHHHHHHHHHHHHHH-cCCcccCCCCC---------CCCHHHHHHHHHHhc
Q psy9338 75 LLCSTKMLSHVNLQ-------YYGDMIRNAVNRVLK-AGKVRTKDLGG---------QSTTQEYTYAVIANL 129 (130)
Q Consensus 75 ils~ammL~~lg~~-------~~A~~i~~Av~~~l~-~g~~~T~DlgG---------~~tT~e~~~avi~~l 129 (130)
|||++|||+|||+. ++|++|++||.++++ +| ++|+|||| .++|+||+++|+++|
T Consensus 349 IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~~G-~~T~Dlgg~~g~~~~~~~~~T~e~~daV~~~l 419 (427)
T 2qfy_A 349 IFAWSRGLLKRGELDNTPALCKFANILESATLNTVQQDG-IMTKDLALACGNNERSAYVTTEEFLDAVEKRL 419 (427)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTC-CCCHHHHHHTTCCSGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccCcchhHHHHHHHHHHHHHHHHhCC-CccccccccCCccccCCCCCHHHHHHHHHHHH
Confidence 99999999999977 899999999999999 99 89999975 479999999999987
No 27
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=100.00 E-value=1.7e-48 Score=329.47 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=116.2
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCCc--ceeccCCCCccccc-----cCCcc-cChHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPEC--VVFEPGARHTYSEA-----VGKNV-ANPTAM 74 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~~--~~fEp~h~Gsapdi-----aGk~~-ANP~a~ 74 (130)
+||||++|++| ||||+|||||||||+ +++||+||+||+|+|++. ++|||+| |||||| +||++ |||+|+
T Consensus 255 ~mqlv~~P~~F-Vivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvH-GSAPdi~~~~~aGk~~~ANP~A~ 332 (413)
T 1lwd_A 255 VAQVLKSSGGF-VWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAH-GTVTRHYREHQKGRPTSTNPIAS 332 (413)
T ss_dssp HHHHHHSCCCE-EEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCS-CCCHHHHHHHHTTCCCCCCCHHH
T ss_pred HHHHhcCCCce-EEEecccccchHHHHHHhhcCCccccccceeCCCCCceEEeCCC-CChhhhhhhhhcCCCCccChHHH
Confidence 49999999999 999999999999999 999999999999999876 8999999 999999 99996 999999
Q ss_pred HHHHHHHhhhcCcHH-------HHHHHHHHHHHHHHcCCcccCCCC----C---------CCCHHHHHHHHHHhc
Q psy9338 75 LLCSTKMLSHVNLQY-------YGDMIRNAVNRVLKAGKVRTKDLG----G---------QSTTQEYTYAVIANL 129 (130)
Q Consensus 75 ils~ammL~~lg~~~-------~A~~i~~Av~~~l~~g~~~T~Dlg----G---------~~tT~e~~~avi~~l 129 (130)
|||++|||+|||+.+ +|++|++||.+++++| ++|+||| | .+||+||+++|+++|
T Consensus 333 IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~~~~T~e~~daV~~~l 406 (413)
T 1lwd_A 333 IFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESG-AMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 406 (413)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHCTTSCCBTTTBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHHcC-CcCcccccccCCcccccccCCCCCHHHHHHHHHHHH
Confidence 999999999999875 8999999999999999 8999996 5 579999999999987
No 28
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=100.00 E-value=3.2e-47 Score=320.86 Aligned_cols=123 Identities=18% Similarity=0.252 Sum_probs=104.4
Q ss_pred cchhhhcCCCCceeeeCCcchhhhhhh--hhcccccccccccCCCC-cceeccCCCCcccc-----ccCCcc-cChHHHH
Q psy9338 5 ELDLKEDSKQLSAPSVKSKQNNIWLDL--RLVGGAGVVAGASWSPE-CVVFEPGARHTYSE-----AVGKNV-ANPTAML 75 (130)
Q Consensus 5 ~~~lv~~P~~fdViv~~Nl~GDIlsd~--~l~Gg~Gl~ps~nig~~-~~~fEp~h~Gsapd-----iaGk~~-ANP~a~i 75 (130)
+||||++|++| ||||+|||||||||+ +++||+||+||+|+|++ .++|||+| ||||| |+||++ |||+|+|
T Consensus 253 ~~~lv~~P~~f-Vivt~Nl~GDIlSD~~A~l~GslGl~psanig~~~~~~fEp~H-GSApd~~~~~iaGk~~~aNP~A~I 330 (402)
T 4aoy_A 253 VARIIRSEGGM-VWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDGKYEFEAAH-GTVTRHYYKHLKGEETSTNSMATI 330 (402)
T ss_dssp HHHHHTSCBCS-EEECCC-CHHHHHHHHHHHHSCTTSEEEEEECTTCCEEEEC------------------CCCCCHHHH
T ss_pred HHHHhhCCCCc-EEEECCcchHHHHHHHHHhcCchhhccccccCCCCceEEeecc-CCccccchhhccCCCcCcCcHHHH
Confidence 48999999999 999999999999999 99999999999999975 68999999 99999 899997 9999999
Q ss_pred HHHHHHhhhcCc-------HHHHHHHHHHHHHHHHcCCcccCCCCCCC--------CHHHHHHHHHHhcC
Q psy9338 76 LCSTKMLSHVNL-------QYYGDMIRNAVNRVLKAGKVRTKDLGGQS--------TTQEYTYAVIANLK 130 (130)
Q Consensus 76 ls~ammL~~lg~-------~~~A~~i~~Av~~~l~~g~~~T~DlgG~~--------tT~e~~~avi~~l~ 130 (130)
||++|||+|+|+ .++|++|++||.+++++| ++|+||||.+ +|+||+++|+++|+
T Consensus 331 ls~a~mL~~~g~~~~~~~l~~~A~~ie~Av~~~l~~g-~~T~Dlgg~~~~~~~~~~~T~ef~~av~~~l~ 399 (402)
T 4aoy_A 331 FAWTGALKKRGELDGIKELVDFATKLEQASVQTIENG-VMTKDLASLSEVPEKKIVNTEDFLKEIRKTFE 399 (402)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT-EEEHHHHTTCCCSCCEEECHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHcC-CCCcccccccccCCCCCcCHHHHHHHHHHHHh
Confidence 999999999987 589999999999999999 7999999876 99999999999885
No 29
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=96.07 E-value=0.011 Score=52.32 Aligned_cols=98 Identities=16% Similarity=0.165 Sum_probs=74.0
Q ss_pred eeeeCCcchhhhhhh----hhcccccccccccCCCCcceeccCCCCccccccCC------cccChHHHHHHHHHHhhhcC
Q psy9338 17 APSVKSKQNNIWLDL----RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGK------NVANPTAMLLCSTKMLSHVN 86 (130)
Q Consensus 17 Viv~~Nl~GDIlsd~----~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk------~~ANP~a~ils~ammL~~lg 86 (130)
+=||.|..-|+|+|+ .+--|.=|++=.=+=.+.++||+..-||||+.+-| =.=+..+-+|+.+--|+|++
T Consensus 535 ISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~GGGLfETGAGGSAPKHVqQ~~eEnhLRWDSLGEFlALa~Sle~l~ 614 (738)
T 2b0t_A 535 ISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLMAGGGLFETGAGGSAPKHVQQVQEENHLRWDSLGEFLALAESFRHEL 614 (738)
T ss_dssp EEEECHHHHHHHHHHHHHHHHSCSSSCEEEEEBTTSCEEEECCSSCCCHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHH
T ss_pred EEeechhhhhhccccchhhhhccchhHhhhcccccCCccccCCCCcCchHHHHHHHHcCccchhhHHHHHHHHHhHHHHH
Confidence 679999999999999 44333333322222235689999777999998643 36688999999999999997
Q ss_pred cH-------HHHHHHHHHHHHHHHcCCcccCCCCC
Q psy9338 87 LQ-------YYGDMIRNAVNRVLKAGKVRTKDLGG 114 (130)
Q Consensus 87 ~~-------~~A~~i~~Av~~~l~~g~~~T~DlgG 114 (130)
.. -.|+.+++|..+.++++|.-.+..|.
T Consensus 615 ~~~~N~kA~vLa~tLD~At~~~L~n~KSPsRkvGe 649 (738)
T 2b0t_A 615 NNNGNTKAGVLADALDKATEKLLNEEKSPSRKVGE 649 (738)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHTTCSCCSSTTS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHhCCCCCCcccCC
Confidence 64 24899999999999998776777765
No 30
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=96.07 E-value=0.01 Score=52.38 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=73.9
Q ss_pred eeeeCCcchhhhhhh----hhcccccccccccCCCCcceeccCCCCccccccCC------cccChHHHHHHHHHHhhhcC
Q psy9338 17 APSVKSKQNNIWLDL----RLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGK------NVANPTAMLLCSTKMLSHVN 86 (130)
Q Consensus 17 Viv~~Nl~GDIlsd~----~l~Gg~Gl~ps~nig~~~~~fEp~h~GsapdiaGk------~~ANP~a~ils~ammL~~lg 86 (130)
+=||.|..-|+|+|+ .+--|.=|++=.=+=.+.++||+..-||||+.+-| =.=+..+-+|+.+--|+|++
T Consensus 539 ISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~GGGLfETGAGGSAPKHVqQ~~eEnhLRWDSLGEFlALa~Sle~l~ 618 (741)
T 1itw_A 539 ISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMSGGGLFETGAGGSAPKHVQQFLEEGYLRWDSLGEFLALAASLEHLG 618 (741)
T ss_dssp EEEECHHHHHHHHHHHHHHHHSCSSSSEEEEEBTTSCEEEESCSSCCCHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHH
T ss_pred EEeechhhhhhccccchhhhhccchhHhhhcccccCCccccCCCCcCchHHHHHHHHcCccchhhHHHHHHHHHhHHHHH
Confidence 679999999999999 44333333322222235689999777999998643 36688999999999999987
Q ss_pred cH-------HHHHHHHHHHHHHHHcCCcccCCCCC
Q psy9338 87 LQ-------YYGDMIRNAVNRVLKAGKVRTKDLGG 114 (130)
Q Consensus 87 ~~-------~~A~~i~~Av~~~l~~g~~~T~DlgG 114 (130)
.. -.|+.+++|..+.++++|.-.+..|.
T Consensus 619 ~~~~N~kA~vLa~tLD~At~~~L~n~KSPsRkvGe 653 (741)
T 1itw_A 619 NAYKNPKALVLASTLDQATGKILDNNKSPARKVGE 653 (741)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTCSCCSSSSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHhCCCCCCcccCC
Confidence 53 24899999999999998776667764
No 31
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=95.60 E-value=0.0074 Score=49.49 Aligned_cols=65 Identities=14% Similarity=0.036 Sum_probs=41.2
Q ss_pred CCCCceeeeCCcchhhhhhhhh--cccccccccccCCCC--cceeccCCCCccccccCCcccChHHHHHHHHHHhh
Q psy9338 12 SKQLSAPSVKSKQNNIWLDLRL--VGGAGVVAGASWSPE--CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLS 83 (130)
Q Consensus 12 P~~fdViv~~Nl~GDIlsd~~l--~Gg~Gl~ps~nig~~--~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL~ 83 (130)
+.+||++|+ || .|.++ +=-++.--+.|+.-+ .----|-| |||-|||||++|||.+++-|.-+...
T Consensus 272 ~~~~D~vla--MY----HDQgl~p~K~l~f~~~vnitlGLp~iRtS~dH-Gta~diagkg~a~~~s~~~Ai~~a~~ 340 (349)
T 4aty_A 272 NPDIDVFVA--MY----HDQGHIPVKLRAGRHSAALSIGAGVLFSSVGH-GSGFDIAGTLLADPAPLLGAIRLVTT 340 (349)
T ss_dssp CTTCSEEEE--SS----HHHHHHHHHHHHTTSEEEEEESSSSEEEECCS-CCCTTSTTTTCCCCHHHHHHHHHHHH
T ss_pred cCCCCEEEE--cc----cccchHHHHhcccCCcEEEecCCCeeEeCCCC-ChhhhhccCCCCChHHHHHHHHHHHH
Confidence 467998877 55 44411 112233334454322 22234677 99999999999999999888776544
No 32
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=95.21 E-value=0.011 Score=48.61 Aligned_cols=68 Identities=12% Similarity=0.016 Sum_probs=43.9
Q ss_pred hhhcCCCCceeeeCCcchhhhhhhhh--cccccccccccCCCC--cceeccCCCCccccccCCcccChHHHHHHHHHHh
Q psy9338 8 LKEDSKQLSAPSVKSKQNNIWLDLRL--VGGAGVVAGASWSPE--CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 82 (130)
Q Consensus 8 lv~~P~~fdViv~~Nl~GDIlsd~~l--~Gg~Gl~ps~nig~~--~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL 82 (130)
.-..-++||++|+ || .|.|+ +=-+|.--+.|+.-+ .---.|-| |||-|||||++|||.+++-|.-+..
T Consensus 256 ~~~~~~~~D~vla--MY----HDQGlip~K~l~F~~gVNvTlGLP~iRTSvDH-GTAfDIAGkG~A~~~Sl~~Ai~~A~ 327 (330)
T 2hi1_A 256 LQAYEGQYDMVVA--MY----HDQGHIPLKLLGFYDGVNITAGLPFIRTSADH-GTAFDIAWTGKAKSESMAVSIKLAM 327 (330)
T ss_dssp HHHHTTSCSEEEE--SS----HHHHHHHHHHCC-CCSEEEEETSSSEEEEESC-CCCTTTTTTTCCCCHHHHHHHHHHH
T ss_pred cccccccCCEEEE--cc----cccccHhHhhcccCcceEEecCCCEEEecCCC-CccccccCCCCCChHHHHHHHHHHH
Confidence 3344578898876 44 45522 233344456666433 22334667 9999999999999999988876544
No 33
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=95.20 E-value=0.011 Score=48.56 Aligned_cols=66 Identities=11% Similarity=0.005 Sum_probs=42.1
Q ss_pred cCCCCceeeeCCcchhhhhhhhh--cccccccccccCCCC--cceeccCCCCccccccCCcccChHHHHHHHHHHhh
Q psy9338 11 DSKQLSAPSVKSKQNNIWLDLRL--VGGAGVVAGASWSPE--CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLS 83 (130)
Q Consensus 11 ~P~~fdViv~~Nl~GDIlsd~~l--~Gg~Gl~ps~nig~~--~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL~ 83 (130)
.-++||++|+ || .|.|+ +=-+|.--+.|+.-+ .---.|-| |||-|||||++|||.+++-|.-+..+
T Consensus 253 ~~~~~D~vla--MY----HDQGlip~K~l~F~~gVNvTlGLP~iRTSvDH-GTAfDIAGkG~A~~~Sl~~Ai~~A~~ 322 (328)
T 1yxo_A 253 HLEHCDAVLA--MY----HDQGLPVLKYKGFGAAVNVTLGLPIIRTSVDH-GTALDLAGSGRIDSGSLQVALETAYQ 322 (328)
T ss_dssp HHTTCSEEEE--SS----HHHHHHHHHHHHTTSCEEEEESSSSCEEEECS-CCCGGGTTTCCCCCHHHHHHHHHHHH
T ss_pred cccCCCEEEE--cc----cccccHhHhhcccCcceEEecCCCEEEecCCC-CccccccCCCCCChHHHHHHHHHHHH
Confidence 3468887776 44 45411 222333445565332 22334667 99999999999999999888766443
No 34
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=95.11 E-value=0.012 Score=48.39 Aligned_cols=65 Identities=9% Similarity=-0.012 Sum_probs=41.7
Q ss_pred CCCceeeeCCcc-hhhhhhhhhcccccccccccCCCC--cceeccCCCCccccccCCcccChHHHHHHHHHHhh
Q psy9338 13 KQLSAPSVKSKQ-NNIWLDLRLVGGAGVVAGASWSPE--CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLS 83 (130)
Q Consensus 13 ~~fdViv~~Nl~-GDIlsd~~l~Gg~Gl~ps~nig~~--~~~fEp~h~GsapdiaGk~~ANP~a~ils~ammL~ 83 (130)
++||++|+..-. |-|---. ++.--+.|+.-+ .---.|-| |||-|||||++|||.+++-|.-+-.+
T Consensus 260 ~~~D~vlaMYHDQGlip~K~-----l~F~~gVNvTlGLP~iRTS~DH-GTAfDIAGkG~A~~~S~~~Ai~~A~~ 327 (334)
T 3lxy_A 260 QHADAVLAMYHDQGLPVLKY-----QGFGRAVNITLGLPFIRTSVDH-GTALELAATGTADVGSFITALNLAIK 327 (334)
T ss_dssp TTCSEEEESSHHHHHHHHHH-----HHTTCCEEEEESSSSCEEEESS-CCCGGGTTTTCSCCHHHHHHHHHHHH
T ss_pred ccCCEEEEcccchhhHhHHh-----cccCccEEEecCCCeeeecCCC-CcchhhccCCCCChHHHHHHHHHHHH
Confidence 689999987543 4443333 122234444322 22234667 99999999999999998887765443
No 35
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=94.26 E-value=0.029 Score=46.73 Aligned_cols=45 Identities=11% Similarity=-0.043 Sum_probs=31.1
Q ss_pred cccccccCCCC--cceeccCCCCccccccCCc-ccChHHHHHHHHHHhh
Q psy9338 38 GVVAGASWSPE--CVVFEPGARHTYSEAVGKN-VANPTAMLLCSTKMLS 83 (130)
Q Consensus 38 Gl~ps~nig~~--~~~fEp~h~GsapdiaGk~-~ANP~a~ils~ammL~ 83 (130)
+.--+.|+.-+ .---.|-| |||-|||||+ +|||.+++-|.-+-.+
T Consensus 315 ~F~~gVNvTlGLP~IRTSvDH-GTAfDIAGkG~~Ad~~Sl~~Ai~~A~~ 362 (367)
T 3tsn_A 315 YFDKSINVSLNLPIIRVSVDH-GTAFDKAYKNAKINTKSYFEAAKFAIN 362 (367)
T ss_dssp CTTTCEEEEESSSSCEEECCC-CSCTTSCSSCCCCCCHHHHHHHHHHHH
T ss_pred ccCccEEEecCCCeeeecCCC-CcchhhcCCCCcCChHHHHHHHHHHHH
Confidence 33345555332 22233667 9999999999 9999999888766443
No 36
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.40A {Enterococcus faecalis}
Probab=36.36 E-value=16 Score=28.66 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=19.2
Q ss_pred CCCceeeeCCcc-hhhhhhh-hhccc
Q psy9338 13 KQLSAPSVKSKQ-NNIWLDL-RLVGG 36 (130)
Q Consensus 13 ~~fdViv~~Nl~-GDIlsd~-~l~Gg 36 (130)
.+.||+|+||+| |||+--. ...++
T Consensus 211 G~adVlV~Pd~~aGNi~~K~~~~~~~ 236 (279)
T 1yco_A 211 GDADILVVPTIDVGNCLYKSLTLFGH 236 (279)
T ss_dssp SCCSEEECSSHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEECCchHHHHHHHHHHHhCC
Confidence 456999999997 9999888 55444
No 37
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.46 E-value=52 Score=25.00 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=19.0
Q ss_pred cccChHHHHHHHHH--HhhhcCcHHH
Q psy9338 67 NVANPTAMLLCSTK--MLSHVNLQYY 90 (130)
Q Consensus 67 ~~ANP~a~ils~am--mL~~lg~~~~ 90 (130)
+.|||.|+.++.+. ..+.+|++|.
T Consensus 56 GlAdP~Al~~a~aa~~a~~~iG~PE~ 81 (201)
T 3bge_A 56 GNADPRAMQVALAAWDCFTRVGAYEG 81 (201)
T ss_dssp GGGCTTHHHHHHHHHHHHHHTCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHCCcHH
Confidence 57999998877665 5578999875
No 38
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=30.07 E-value=27 Score=23.02 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCcccCCCC-------CCCCHHHHHHHHHHhc
Q psy9338 95 RNAVNRVLKAGKVRTKDLG-------GQSTTQEYTYAVIANL 129 (130)
Q Consensus 95 ~~Av~~~l~~g~~~T~Dlg-------G~~tT~e~~~avi~~l 129 (130)
|++|++++...-+.|.||- +..+++|..+.+.+.|
T Consensus 21 Ee~VRryL~rkPmTT~dLl~KFK~r~~~~~~~e~v~~~a~IL 62 (82)
T 1nha_A 21 EDAVRRYLTRKPMTTKDLLKKFQTKKTGLSSEQTVNVLAQIL 62 (82)
T ss_dssp HHHHHHHHHHSCBCHHHHHHHTTSSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHhcccCCCHHHHHHHHHHH
Confidence 3789999987667777872 2358888877766544
No 39
>3bvr_A NOTI restriction endonuclease; protein-DNA complex; HET: DNA; 2.50A {Nocardia otitidiscaviarum} PDB: 3bvq_A* 3c25_A*
Probab=27.50 E-value=12 Score=30.69 Aligned_cols=23 Identities=4% Similarity=-0.071 Sum_probs=17.8
Q ss_pred hhcCCCCceeeeCCcc--hhhhhhh
Q psy9338 9 KEDSKQLSAPSVKSKQ--NNIWLDL 31 (130)
Q Consensus 9 v~~P~~fdViv~~Nl~--GDIlsd~ 31 (130)
.++++.||||+|||.+ ..|++|+
T Consensus 70 ~~d~ePydvIiCPiRL~dy~il~~~ 94 (383)
T 3bvr_A 70 AVDNERYDWLVCPNRALDPLFMSAA 94 (383)
T ss_dssp EETTEEEEEECCGGGGCCHHHHHHH
T ss_pred cCCCCCceEEEcccccccHHHHHHH
Confidence 3567788999999987 4467777
No 40
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.42 E-value=41 Score=25.65 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=18.6
Q ss_pred cccChHHHHHHHHH--HhhhcCcHHH
Q psy9338 67 NVANPTAMLLCSTK--MLSHVNLQYY 90 (130)
Q Consensus 67 ~~ANP~a~ils~am--mL~~lg~~~~ 90 (130)
+.|||.|+.++.+. ..+.+|++|.
T Consensus 62 GlAdP~Al~~a~aa~~a~~~iG~PE~ 87 (204)
T 2r9g_A 62 GLGNPAAAARTVNAVLAAEKLGLPEA 87 (204)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 57999998887665 5577999864
No 41
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structura genomics, JCSG, protein structure initiative, PSI, joint CE structural genomics; 2.32A {Escherichia coli} SCOP: c.77.1.5
Probab=25.68 E-value=23 Score=28.53 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=19.8
Q ss_pred CCCceeeeCCcc-hhhhhhh-hhccc
Q psy9338 13 KQLSAPSVKSKQ-NNIWLDL-RLVGG 36 (130)
Q Consensus 13 ~~fdViv~~Nl~-GDIlsd~-~l~Gg 36 (130)
+++||+|+||+| |+|.--. ...++
T Consensus 272 G~aDvlV~Pd~d~GNI~~K~l~~~~~ 297 (355)
T 1vmi_A 272 GKANVMVFPSLEAGNIGYKIAQRLGG 297 (355)
T ss_dssp TCCSEEECSSHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEECChhHHhHHHHHHHHccC
Confidence 689999999999 9998888 55444
No 42
>2oxl_A Hypothetical protein YMGB; bacterial protein, biofilm, acid resistance, DNA binding Pro dimer, gene regulation; HET: BOG; 1.80A {Escherichia coli}
Probab=25.68 E-value=1.2e+02 Score=18.64 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhcC
Q psy9338 87 LQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANLK 130 (130)
Q Consensus 87 ~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l~ 130 (130)
++.+.+.+...+...+..| +..|-+++.-.++.+|+
T Consensus 3 ~~~E~e~Lg~iv~eil~~g--------~~vsnKaIi~~LI~rLE 38 (64)
T 2oxl_A 3 LEEESAVLGQAVTNLMLSG--------DNVNNKNIILSLIHSLE 38 (64)
T ss_dssp THHHHHHHHHHHHHHHHTT--------CCCSHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHcC--------CCCcHHHHHHHHHHHHH
Confidence 4567888999999999887 45777888887777763
No 43
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.58 E-value=41 Score=25.79 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=24.3
Q ss_pred cccChHHHHHHHHH--HhhhcCcHHHHHHHHHHHHHH
Q psy9338 67 NVANPTAMLLCSTK--MLSHVNLQYYGDMIRNAVNRV 101 (130)
Q Consensus 67 ~~ANP~a~ils~am--mL~~lg~~~~A~~i~~Av~~~ 101 (130)
+.|||.|+.++.+. ..+.+|++|.--.|-.||.-.
T Consensus 84 GlAdP~Al~~a~aa~~a~~~iG~PE~~i~LaqaviyL 120 (213)
T 3ctd_A 84 GLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQASLYL 120 (213)
T ss_dssp GGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 47999998877665 467899987655555444433
No 44
>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.75A {Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A
Probab=24.09 E-value=26 Score=27.79 Aligned_cols=24 Identities=17% Similarity=0.164 Sum_probs=19.7
Q ss_pred CCCceeeeCCcc-hhhhhhh-hhccc
Q psy9338 13 KQLSAPSVKSKQ-NNIWLDL-RLVGG 36 (130)
Q Consensus 13 ~~fdViv~~Nl~-GDIlsd~-~l~Gg 36 (130)
.++||+|+||.| |+|.--. ...++
T Consensus 265 G~aDvlV~pd~d~GNI~~K~l~~~~~ 290 (329)
T 1td9_A 265 GDANVFVFPSLEAGNIGYKIAQRLGN 290 (329)
T ss_dssp SCCSEEECSSHHHHHHHHHHHHHTTT
T ss_pred CCCCEEEECChhHHHHHHHHHHHhcC
Confidence 689999999999 9998887 55443
No 45
>1v8d_A Hypothetical protein (TT1679); X-RAY craytallography, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.16A {Thermus thermophilus} SCOP: c.140.1.1
Probab=24.02 E-value=97 Score=24.04 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHHHHHHHcCCcccCCC-----------C---CCCCHHHHHHHHHHhc
Q psy9338 87 LQYYGDMIRNAVNRVLKAGKVRTKDL-----------G---GQSTTQEYTYAVIANL 129 (130)
Q Consensus 87 ~~~~A~~i~~Av~~~l~~g~~~T~Dl-----------g---G~~tT~e~~~avi~~l 129 (130)
+++..+.+++++.+.++.......|+ | |+.++.|++++|.+.|
T Consensus 40 m~~i~~~~~~~l~Ell~~a~l~~G~ifVvGcSTSEV~G~~IGt~ss~eva~aI~~~l 96 (235)
T 1v8d_A 40 MEGIRRAAQRAAEEFLQAFPMAPGSLFVLGGSTSEVLGERVGTRPSLEAAHAVLEGL 96 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCTTCEEEEEECHHHHHC----CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeeHHHhCCccCCCCCcHHHHHHHHHHH
Confidence 44678888899999998876666666 2 4688899999998765
No 46
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A* 2af3_C*
Probab=23.98 E-value=31 Score=27.36 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=20.4
Q ss_pred CCCceeeeCCcc-hhhhhhh-hhcccc
Q psy9338 13 KQLSAPSVKSKQ-NNIWLDL-RLVGGA 37 (130)
Q Consensus 13 ~~fdViv~~Nl~-GDIlsd~-~l~Gg~ 37 (130)
+++||+|+||+| |||.--+ ...++.
T Consensus 265 G~aDvlV~pd~d~GNI~~K~l~~~~~~ 291 (333)
T 2af4_C 265 GKANVFIFPDLNCGNIAYKIAQRLAKA 291 (333)
T ss_dssp TSCCEEECSSHHHHHHHHHHHHHTSCC
T ss_pred CcCCEEEECCchHHHHHHHHHHHccCc
Confidence 689999999999 9998888 655543
No 47
>1fc3_A SPO0A; response regulator, signaling protein; 2.00A {Geobacillus stearothermophilus} SCOP: a.4.6.3 PDB: 1lq1_A
Probab=23.91 E-value=1.1e+02 Score=21.06 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCcccC-CC--------CCCCCHHHHHHHHHHhcC
Q psy9338 92 DMIRNAVNRVLKAGKVRTK-DL--------GGQSTTQEYTYAVIANLK 130 (130)
Q Consensus 92 ~~i~~Av~~~l~~g~~~T~-Dl--------gG~~tT~e~~~avi~~l~ 130 (130)
+.|+.|++.++.+|+.-+- .+ .++-|-+||.+.+.+.|+
T Consensus 67 raIR~aIe~aw~~g~~~~l~~ifg~t~~~~~~kPTnsEFI~~iad~Lr 114 (120)
T 1fc3_A 67 RAIRHAIEVAWSRGNLESISSLFGYTVSVSKAKPTNSEFIAMVADKLR 114 (120)
T ss_dssp HHHHHHHHHHHHSSCTTTTHHHHCHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHCCCcccCCCCCCHHHHHHHHHHHHH
Confidence 3455555555566642221 01 266799999999998763
No 48
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} SCOP: c.77.1.5
Probab=21.87 E-value=41 Score=26.58 Aligned_cols=25 Identities=20% Similarity=0.097 Sum_probs=21.0
Q ss_pred CCCceeeeCCcc-hhhhhhh-hhcccc
Q psy9338 13 KQLSAPSVKSKQ-NNIWLDL-RLVGGA 37 (130)
Q Consensus 13 ~~fdViv~~Nl~-GDIlsd~-~l~Gg~ 37 (130)
.++||+|+||++ |+|.--. +..++.
T Consensus 269 G~aDvlv~p~~d~GnI~~K~l~~~~~~ 295 (337)
T 1r5j_A 269 GQANTFVFPDLQSGNIGYKIAQRLGMF 295 (337)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHTTCC
T ss_pred CCCCEEEECChHHHHHHHHHHHHhcCC
Confidence 789999999999 9998888 665554
No 49
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=21.45 E-value=31 Score=26.20 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=20.7
Q ss_pred ccchhhhcCCCCceeeeCCcchhhhhhh
Q psy9338 4 SELDLKEDSKQLSAPSVKSKQNNIWLDL 31 (130)
Q Consensus 4 ~~~~lv~~P~~fdViv~~Nl~GDIlsd~ 31 (130)
|.++.+...+.||+|+..|+=|+++.++
T Consensus 80 D~l~~~~~~~~~D~IviaGmGg~lI~~I 107 (230)
T 3lec_A 80 NGLSAFEEADNIDTITICGMGGRLIADI 107 (230)
T ss_dssp SGGGGCCGGGCCCEEEEEEECHHHHHHH
T ss_pred chhhccccccccCEEEEeCCchHHHHHH
Confidence 4455553223799999999999988887
No 50
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=21.32 E-value=78 Score=25.86 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=30.7
Q ss_pred HHHHhhhcCcHHHHHHHHHHHHHHHHcCCcccCCCCCCCCHHHHHHHHHHhc
Q psy9338 78 STKMLSHVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANL 129 (130)
Q Consensus 78 ~ammL~~lg~~~~A~~i~~Av~~~l~~g~~~T~DlgG~~tT~e~~~avi~~l 129 (130)
.+-+|+..|++..|.+|-+||-+.=+.+.+ .||.|+++.|.+.+
T Consensus 182 La~Il~~YGEEr~a~rIA~aIv~~R~~~pi--------~tT~~La~ii~~a~ 225 (347)
T 3tka_A 182 IAWVLKTYGEERFAKRIARAIVERNREQPM--------TRTKELAEVVAAAT 225 (347)
T ss_dssp HHHHHHHHHCCTTHHHHHHHHHHHHHHSCC--------CBHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHhcCCC--------CcHHHHHHHHHHhC
Confidence 345666678888899999998766554434 46788887776543
No 51
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=21.05 E-value=82 Score=17.22 Aligned_cols=19 Identities=11% Similarity=0.085 Sum_probs=14.9
Q ss_pred HhhhcCcHHHHHHHHHHHH
Q psy9338 81 MLSHVNLQYYGDMIRNAVN 99 (130)
Q Consensus 81 mL~~lg~~~~A~~i~~Av~ 99 (130)
--+++|..++|++||+.++
T Consensus 11 YYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 11 YYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHTCHHHHHHHHHHHT
T ss_pred HHHHcccHHHHHHHHHHHH
Confidence 3466899999999987653
No 52
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=20.82 E-value=40 Score=25.01 Aligned_cols=33 Identities=21% Similarity=0.143 Sum_probs=22.8
Q ss_pred cccccccCCCCcceeccCCCCccccccCCcccCh
Q psy9338 38 GVVAGASWSPECVVFEPGARHTYSEAVGKNVANP 71 (130)
Q Consensus 38 Gl~ps~nig~~~~~fEp~h~GsapdiaGk~~ANP 71 (130)
|..++...++...++-|.| |+.-|+.|+-+..|
T Consensus 143 G~~l~~~~~~~~~~~CP~H-Gs~FD~~G~v~~gP 175 (196)
T 1pp9_E 143 GCVPIANAGDFGGYYCPCH-GSHYDASGRIRKGP 175 (196)
T ss_dssp SCCCEETCSTTSSEEETTT-TEEECTTCCEEESS
T ss_pred CeeccccCCCCCEEEeCCC-CCEECCCCCCccCC
Confidence 4334443334456888988 99999999977666
No 53
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=20.06 E-value=27 Score=22.54 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=24.1
Q ss_pred HHHHHHHHHcCCcccCCCC-------CCCCHHHHHHHHHHhc
Q psy9338 95 RNAVNRVLKAGKVRTKDLG-------GQSTTQEYTYAVIANL 129 (130)
Q Consensus 95 ~~Av~~~l~~g~~~T~Dlg-------G~~tT~e~~~avi~~l 129 (130)
|++|++++...-+.|.||- ...+++|..+.+.+.|
T Consensus 12 Ee~VrryL~rkPmTt~dLl~KFK~r~~~~~~~e~v~~~a~IL 53 (73)
T 1i27_A 12 EDAVRRYLTRKPMTTKDLLKKFQTKKTGLSSEQTVNVLAQIL 53 (73)
T ss_dssp HHHHHHHHHHSCBCHHHHHHTSCHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHhcccCCCHHHHHHHHHHH
Confidence 4889999987667777873 1257777776665543
No 54
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=20.00 E-value=35 Score=25.00 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=19.4
Q ss_pred CCcceeccCCCCccccccCCcccCh
Q psy9338 47 PECVVFEPGARHTYSEAVGKNVANP 71 (130)
Q Consensus 47 ~~~~~fEp~h~GsapdiaGk~~ANP 71 (130)
+...+|-|.| ||.-|+.|+-+..|
T Consensus 142 ~~~~~~CPcH-Gs~FD~~G~v~~gP 165 (185)
T 3cx5_E 142 DFGGWFCPCH-GSHYDISGRIRKGP 165 (185)
T ss_dssp TTTEEEETTT-TEEECTTCCEEESS
T ss_pred CCCEEEcCCC-CCEECCCCCEecCC
Confidence 3456888988 99999999977766
Done!