RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9338
(130 letters)
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A
3blv_A*
Length = 349
Score = 135 bits (342), Expect = 5e-40
Identities = 46/98 (46%), Positives = 65/98 (66%)
Query: 33 LVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGD 92
L+GG G+VAGA++ + VFEPG+RH + G+NVANPTAM+L ST ML+H+ L Y
Sbjct: 250 LIGGPGLVAGANFGRDYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLMLNHLGLNEYAT 309
Query: 93 MIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANLK 130
I AV+ + GK T+D+GG S+T ++T +I L
Sbjct: 310 RISKAVHETIAEGKHTTRDIGGSSSTTDFTNEIINKLS 347
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B*
3blv_B
Length = 354
Score = 123 bits (311), Expect = 2e-35
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 34 VGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDM 93
G G+ A+ + +FE + + G++ ANPTA+LL S ML+H+ L + D
Sbjct: 259 AGSLGLTPSANIGHKISIFEA-VHGSAPDIAGQDKANPTALLLSSVMMLNHMGLTNHADQ 317
Query: 94 IRNAVNRVLKAG-KVRTKDLGGQSTTQEYTYAVIANL 129
I+NAV + +G + RT DL G +TT +T AVI L
Sbjct: 318 IQNAVLSTIASGPENRTGDLAGTATTSSFTEAVIKRL 354
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
NAP CIT; 1.80A {Thermus thermophilus}
Length = 496
Score = 123 bits (311), Expect = 2e-34
Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 33 LVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGD 92
L+GG G A+ E +FE + + GKNV NPTA+LL + ML ++ D
Sbjct: 257 LIGGLGFAPSANIGNEVAIFEA-VHGSAPKYAGKNVINPTAVLLSAVMMLRYLEEFATAD 315
Query: 93 MIRNAVNRVLKAGKVRTKDLGGQ---STTQEYTYAVIANLK 130
+I NA+ L+ G+V T D+ G + T EYT A+I NL
Sbjct: 316 LIENALLYTLEEGRVLTGDVVGYDRGAKTTEYTEAIIQNLG 356
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus
tokodaii} SCOP: c.77.1.1
Length = 336
Score = 113 bits (285), Expect = 1e-31
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 33 LVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGD 92
+ G G+ A+ + +FEP + GKN+ NPTA LL + M + D
Sbjct: 233 IAGSLGIAPSANIGDKKALFEP-VHGAAFDIAGKNIGNPTAFLLSVSMMYERMYELSNDD 291
Query: 93 -------MIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANL 129
+ NA+ V K K T D+GG +TT + + L
Sbjct: 292 RYIKASRALENAIYLVYKERKALTPDVGGNATTDDLINEIYNKL 335
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative
decarboxylase, amino-acid biosynthes lysine
biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB:
3ty3_A
Length = 366
Score = 111 bits (279), Expect = 1e-30
Identities = 39/103 (37%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 33 LVGGAGVVAGASWSPECVVFEP--GARHTYSEA---VGKNVANPTAMLLCSTKMLSHVNL 87
L+G G+V A+ V+ EP G+ A G+ +ANP A ML +
Sbjct: 269 LIGSLGLVPSANVGDNFVMSEPVHGS------APDIAGRGIANPVATFRSVALMLEFMGH 322
Query: 88 QYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANLK 130
Q I AV++VL GKV T DLGG+S T E T AV+AN+
Sbjct: 323 QDAAADIYTAVDKVLTEGKVLTPDLGGKSGTNEITDAVLANIH 365
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating
dehydrogenase, lysine biosyn; 1.85A {Thermus
thermophilus} PDB: 3asj_A* 3ah3_A
Length = 333
Score = 107 bits (269), Expect = 2e-29
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 33 LVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGD 92
LVGG G+ + VFEP + + GK +ANPTA +L + ML ++ +
Sbjct: 236 LVGGLGLAPSGNIGDTTAVFEP-VHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAK 294
Query: 93 MIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANLK 130
+ AV+ VL+ G RT DLGG +TT+ +T AV+ LK
Sbjct: 295 RVEKAVDLVLERGP-RTPDLGGDATTEAFTEAVVEALK 331
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural
genomics center for infectious ssgcid, glyoxylate
bypass, manganese; 1.65A {Burkholderia pseudomallei}
PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A
1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A*
1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ...
Length = 427
Score = 92.4 bits (230), Expect = 2e-23
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 33 LVGGAGVVAGASWSPECVVFEP--GARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYY 90
VGG G+ GA+ S +FE G Y+ GK+ NP + +L + ML H+
Sbjct: 326 QVGGIGIAPGANLSDSVAMFEATHGTAPKYA---GKDYVNPGSEILSAEMMLRHLGWTEA 382
Query: 91 GDMIRNAVNRVLKAGKV-----RTKDLGGQSTTQEYTYAVIANLK 130
D+I +A+ + +K +V R + Q + + +I N++
Sbjct: 383 ADVIISAMEKSIKQKRVTYDFARLMEGATQVSCSGFGQVLIENME 427
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein,
isocitrate/isopropylmalate dehydrogenase-like fold,
oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus
thiooxidans}
Length = 429
Score = 91.2 bits (227), Expect = 6e-23
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 33 LVGGAGVVAGASWSPECVVFEP--GARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYY 90
VGG G+ GA+ S +FE G G+ ANP++++L + ML H+
Sbjct: 329 EVGGIGMAPGANLSDTHAIFEATHGTAPDI---AGQGKANPSSLILSAVMMLEHLGWGEA 385
Query: 91 GDMIRNAVNRVLKAGKVRTKDLGGQ------STTQEYTYAVIANL 129
I A+N + AG+V T DL +T E+T A+I
Sbjct: 386 AQAIVAAMNATIAAGEV-TGDLAALRGDVPALSTTEFTAALIRRF 429
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
domain swapping, phosphorylation, aromatic cluster,
NADP; 2.5A {Archaeoglobus fulgidus}
Length = 412
Score = 89.7 bits (223), Expect = 2e-22
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 33 LVGGAGVVAGASWSPECVVFEP--GARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYY 90
L+GG G+ G++ VFEP G+ Y+ G+N NPTA +L M ++ +
Sbjct: 310 LIGGLGIAPGSNIGDGIGVFEPVHGSAPKYA---GQNKVNPTAEILTGALMFEYIGWKDA 366
Query: 91 GDMIRNAVNRVLKAGKVRTKDL-----GGQSTTQEYTYAVIANLK 130
+MI+ AV + +G V T D+ G + T+E+ AV+ NL+
Sbjct: 367 SEMIKKAVEMTISSGIV-TYDIHRHMGGTKVGTREFAEAVVENLQ 410
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase;
homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii
str} PDB: 2dht_A 2e5m_A*
Length = 409
Score = 88.8 bits (221), Expect = 4e-22
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 33 LVGGAGVVAGASWSPECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYG 91
L+G G++ GA+ E +FE A H T + GKNVANPT ++ ML +
Sbjct: 307 LIGNIGMLGGANIGDEGGMFE--AIHGTAPKYAGKNVANPTGIIKAGELMLRWMGWNEAA 364
Query: 92 DMIRNAVNRVLKAGKVRTKDL-----GGQSTTQEYTYAVIANLK 130
D+I A+N ++ KV T+D+ T+EY +I +
Sbjct: 365 DLIEKAINMAIRDKKV-TQDIARFMGVKALGTKEYADELIKIMD 407
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic
acid cycle, oxidoreductase, protein phosphorylation,
NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP:
c.77.1.1
Length = 423
Score = 86.6 bits (215), Expect = 2e-21
Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 33 LVGGAGVVAGASWSPEC--VVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYY 90
VGG G+ GA+ + E +FE T + G + NP++++L +L H+
Sbjct: 320 QVGGIGIAPGANINYETGHAIFEA-THGTAPKYAGLDKVNPSSVILSGVLLLEHLGWNEA 378
Query: 91 GDMIRNAVNRVLKAGKV-----RTKDLGGQSTTQEYTYAVIANL 129
D++ ++ + + + V R D + E+ +I N+
Sbjct: 379 ADLVIKSMEKTIASKVVTYDFARLMDGATEVKCSEFGEELIKNM 422
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex,
oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB:
1v94_A 1xgv_A 1xkd_A*
Length = 435
Score = 85.5 bits (212), Expect = 7e-21
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 13/107 (12%)
Query: 33 LVGGAGVVAGASWSPECVVFEP--GARHTYSEAVGKNVANPTAMLLCSTKMLS-HVNLQY 89
LVGG G+ AG + V EP G Y+ GK++ NP+A +L ++ ++ + +
Sbjct: 320 LVGGIGMAAGMNMGDGIAVAEPVHGTAPKYA---GKDLINPSAEILSASLLIGEFMGWRE 376
Query: 90 YGDMIRNAVNRVLKAGKVRTKDLGGQST------TQEYTYAVIANLK 130
++ A+ + +++ KV T+DL T EYT +IA +
Sbjct: 377 VKSIVEYAIRKAVQSKKV-TQDLARHMPGVQPLRTSEYTETLIAYID 422
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium,
manganese, NAD, oxidoreductase; HET: NAD; 2.00A
{Pseudomonas putida} PDB: 3fmx_X*
Length = 364
Score = 73.4 bits (181), Expect = 1e-16
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 33 LVGGAGVVAGASWSPECV---VFEP--GARHTYSEA---VGKNVANPTAMLLCSTKMLSH 84
G G+ A+ +PE +FEP G+ A GKN+ANP AM+ ML
Sbjct: 258 CAGTIGIAPSANLNPERNFPSLFEPVHGS------APDIFGKNIANPIAMIWSGALMLEF 311
Query: 85 V-----NLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANLK 130
+ Q D + NA+ RV+ G T D+GG +TQ+ A+ L
Sbjct: 312 LGQGDERYQRAHDDMLNAIERVIADG-SVTPDMGGTLSTQQVGAAISDTLA 361
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine
biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus}
PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A
2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A
1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Length = 359
Score = 64.5 bits (158), Expect = 2e-13
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 33 LVGGAGVVAGASWSPECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYY 90
L G G++ AS VFEP H + + GK +ANPTA +L + ML H L
Sbjct: 253 LPGSLGLLPSASLGRGTPVFEPV--HGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVEL 310
Query: 91 GDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANLK 130
+ +AV + L DLGG + T+ +T V+ +L
Sbjct: 311 ARKVEDAVAKALLET--PPPDLGGSAGTEAFTATVLRHLA 348
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid,
oxidoreductase; 1.85A {Campylobacter jejuni} PDB: 3udo_A
Length = 361
Score = 61.0 bits (149), Expect = 3e-12
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 65 GKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQS--TTQEY 121
N+ANP A +L + ML + + I NA++ L G TKDL +S T E
Sbjct: 289 HLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQG-KMTKDLNAKSYLNTDEM 347
Query: 122 TYAVIANLK 130
++ LK
Sbjct: 348 GDCILEILK 356
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase,
decarboxylating dehydrogenase, leucine biosynthesis;
HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP:
c.77.1.1
Length = 358
Score = 59.1 bits (144), Expect = 1e-11
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 33 LVGGAGVVAGASWSPECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYY 90
L G G++ AS ++EP H + + G++ ANP A +L ML H +N + +
Sbjct: 255 LTGSIGMLPSASLGEGRAMYEPI--HGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPW 312
Query: 91 GDMIRNAVNRVLKAGKVRTKDLGGQST----TQEYTYAVIANLK 130
+ AV RVL G +RT D+ T T+ AV+ L
Sbjct: 313 AQRVEAAVQRVLDQG-LRTADIAAPGTPVIGTKAMGAAVVNALN 355
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI,
protein structure initiative, joint center for structu
genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Length = 366
Score = 58.0 bits (141), Expect = 3e-11
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 65 GKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQS----TTQ 119
GKN+ANP A +L ML H + I AV V++ G RT+D+ +T
Sbjct: 294 GKNIANPIAQILSLAMMLEHSFGMVEEARKIERAVELVIEEG-YRTRDIAEDPEKAVSTS 352
Query: 120 EYTYAVIANLK 130
+ + L+
Sbjct: 353 QMGDLICKKLE 363
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate
and isopropylmalate dehydrogenases family, biosynthesis;
2.25A {Arabidopsis thaliana}
Length = 405
Score = 57.6 bits (140), Expect = 4e-11
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 65 GKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQST----TQ 119
G++ ANP A +L + +L + + + I +AV L G RT D+ T +
Sbjct: 329 GQDKANPLATILSAAMLLKYGLGEEKAAKRIEDAVLVALNNG-FRTGDIYSAGTKLVGCK 387
Query: 120 EYTYAVIANLK 130
E V+ ++
Sbjct: 388 EMGEEVLKSVD 398
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase);
oxidoreductase, leucine biosynthetic pathway,
NAD-dependant enzyme; 1.76A {Salmonella typhimurium}
SCOP: c.77.1.1 PDB: 1cm7_A
Length = 363
Score = 57.6 bits (140), Expect = 6e-11
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 65 GKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAGKVRTKDL---GGQSTTQE 120
GKN+ANP A +L +L + ++ I A+NR L+ G VRT DL +T E
Sbjct: 292 GKNIANPIAQILSLALLLRYSLDANDAATAIEQAINRALEEG-VRTGDLARGAAAVSTDE 350
Query: 121 YTYAVIANLK 130
+ +
Sbjct: 351 MGDIIARYVA 360
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating
dehydrogenase; HET: IPM; 1.48A {Shewanella benthica}
PDB: 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A*
3vl3_A*
Length = 375
Score = 57.2 bits (139), Expect = 7e-11
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 65 GKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQS------T 117
G+ +ANP A +L + +L H + L+ I AV++ L G T +L S +
Sbjct: 301 GQGIANPVAQILSAALLLRHSLKLEDAALAIEAAVSKALSDG-YLTCELLPASERSQAKS 359
Query: 118 TQEYTYAVIANLK 130
T + + +
Sbjct: 360 TSQMGDYIAQAIA 372
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB:
2ayq_A 1v53_A 1v5b_A
Length = 390
Score = 56.9 bits (138), Expect = 8e-11
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 65 GKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAGKVRTKDL----GGQSTTQ 119
GK +ANP A +L + ML + L+ I AV +VL G RT D+ G +T
Sbjct: 308 GKGIANPLATILSAAMMLRYSFGLEEEAKAIEKAVEKVLAEG-YRTADIAKPGGKYVSTT 366
Query: 120 EYTYAVIANLK 130
E T V A +
Sbjct: 367 EMTDEVKAAVV 377
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine
biosynthesis, NAD, ST genomics, PSI, protein structure
initiative; 1.65A {Mycobacterium tuberculosis} SCOP:
c.77.1.1 PDB: 2g4o_A
Length = 337
Score = 56.4 bits (137), Expect = 1e-10
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 20/105 (19%)
Query: 33 LVGGAGVVAGASWSPECVV---FEP--GARHTYSEA---VGKNVANPTAMLLCSTKMLSH 84
+ GG G+ A + FEP G+ A G+ +A+PTA ++ +LSH
Sbjct: 245 VCGGIGLAASGNIDATRANPSMFEPVHGS------APDIAGQGIADPTAAIMSVALLLSH 298
Query: 85 VNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANL 129
+ + AV L + T + + A L
Sbjct: 299 LGEHDAAARVDRAVEAHL------ATRGSERLATSDVGERIAAAL 337
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline,
thermostable, oxidoreductase; 2.24A {Thermotoga
maritima}
Length = 399
Score = 38.6 bits (89), Expect = 2e-04
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 17/90 (18%)
Query: 57 RHTY-SEAVGKNVANPTAMLLCSTKMLSHV-------NLQYYGDMIRNAVNRVLKAGKVR 108
RH Y K NPTA + T + + + D + AV +++G +
Sbjct: 308 RHYYRYLKGEKTSTNPTASIFAWTGAIRKRGELDGTPEVCEFADKLEKAVINTIESGVI- 366
Query: 109 TKDLGGQS--------TTQEYTYAVIANLK 130
TKDL + T +E+ V NL+
Sbjct: 367 TKDLQPFTEPPIDKYVTLEEFIDEVKKNLE 396
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation,
thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A
{Desulfotalea psychrophila} PDB: 2uxr_A*
Length = 402
Score = 37.0 bits (85), Expect = 7e-04
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 16/81 (19%)
Query: 65 GKNVANPTAMLLCSTKMLSHV-------NLQYYGDMIRNAVNRVLKAGKVRTKDLGGQS- 116
+ NP A++ T L +L + D + +++G + T DL
Sbjct: 319 ERTSTNPVALIYAWTGALRKRGELDGTPDLCAFCDSLEAITIECIESGYM-TGDLARICE 377
Query: 117 -------TTQEYTYAVIANLK 130
+ E+ + L+
Sbjct: 378 PAAIKVLDSIEFIDELGKRLQ 398
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 7e-04
Identities = 27/129 (20%), Positives = 41/129 (31%), Gaps = 38/129 (29%)
Query: 1 IICSELDL--KEDSKQLSAPSVKSKQNNIWLDLRLVGGAGVVAGA-SW------SPECV- 50
+ L E L + S+ LV A +A SW + +
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQG--------LVT-AVAIAETDSWESFFVSVRKAIT 301
Query: 51 -VFEPGAR--HTY------SEAVGKNVAN----PTAMLLCSTKMLSHVNLQYYGDMIRNA 97
+F G R Y + ++ N P+ ML S L+ +Q D +
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN--LTQEQVQ---DYVN-K 355
Query: 98 VNRVLKAGK 106
N L AGK
Sbjct: 356 TNSHLPAGK 364
Score = 30.4 bits (68), Expect = 0.15
Identities = 31/166 (18%), Positives = 47/166 (28%), Gaps = 62/166 (37%)
Query: 8 LKED-SKQLSAPSVKSKQNNIWLD------LRLVGG-AGVVAGASWSPECVVFEPGARHT 59
L+E +K L P+ D LVG G V+ + EP
Sbjct: 33 LQEQFNKILPEPT-----EGFAADDEPTTPAELVGKFLGYVSS--------LVEPSKVGQ 79
Query: 60 YSEAV-------------GKNVANPTAMLLCS--TKMLSHVNL--QYYGDMIRNAVNRVL 102
+ + + G ++ A LL T ++ L Y R R
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI--TARIMAKRPF 137
Query: 103 ------------KAGKVRTKDL-GGQSTTQEY---------TYAVI 126
G + + GGQ T +Y TY V+
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature
adaptation, thermophilic, psychr NADP+ selectivity,
domain movements; 2.35A {Clostridium thermocellum} PDB:
4aou_A
Length = 402
Score = 36.3 bits (83), Expect = 0.002
Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 16/80 (20%)
Query: 66 KNVANPTAMLLCSTKMLSHV-------NLQYYGDMIRNAVNRVLKAGKVRTKDLGGQS-- 116
+ N A + T L L + + A + ++ G + TKDL S
Sbjct: 321 ETSTNSMATIFAWTGALKKRGELDGIKELVDFATKLEQASVQTIENGVM-TKDLASLSEV 379
Query: 117 ------TTQEYTYAVIANLK 130
T+++ + +
Sbjct: 380 PEKKIVNTEDFLKEIRKTFE 399
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase;
HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A*
2qfx_A* 2qfv_A*
Length = 427
Score = 35.5 bits (81), Expect = 0.002
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 16/82 (19%)
Query: 65 GKNVANPTAMLLCSTKMLSHV-------NLQYYGDMIRNAVNRVLKAGKVRTKDLGGQS- 116
+ N A + ++ L L + +++ +A ++ + TKDL
Sbjct: 339 EETSTNSIASIFAWSRGLLKRGELDNTPALCKFANILESATLNTVQQDGIMTKDLALACG 398
Query: 117 --------TTQEYTYAVIANLK 130
TT+E+ AV L+
Sbjct: 399 NNERSAYVTTEEFLDAVEKRLQ 420
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold,
C2 domain fold, ACU blood coagulation, disease mutation,
glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens}
PDB: 3cdz_A*
Length = 742
Score = 28.5 bits (62), Expect = 0.76
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 36 GAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKM-LSHVNLQY 89
+ G + + PG Y V + C T+ S VN++
Sbjct: 489 SRRLPKGVKHLKDFPI-LPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFVNMER 542
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.376
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,883,712
Number of extensions: 97418
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 29
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.3 bits)