RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9338
(130 letters)
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thermus thermophilus [TaxId: 274]}
Length = 345
Score = 93.3 bits (231), Expect = 2e-24
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 33 LVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHV-NLQYYG 91
L G G++ AS VFEP + GK +ANPTA +L + ML H L
Sbjct: 250 LPGSLGLLPSASLGRGTPVFEPVHGS-APDIAGKGIANPTAAILSAAMMLEHAFGLVELA 308
Query: 92 DMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANL 129
+ +AV + L + DLGG + T+ +T V+ +L
Sbjct: 309 RKVEDAVAKALL--ETPPPDLGGSAGTEAFTATVLRHL 344
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 94.1 bits (233), Expect = 2e-24
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 34 VGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDM 93
VGG G+ GA+ EC +FE T + G++ NP +++L + ML H+ D+
Sbjct: 317 VGGIGIAPGANIGDECALFEA-THGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADL 375
Query: 94 IRNAVNRVLKAGKV-----RTKDLGGQSTTQEYTYAVIANL 129
I + + A V R D E+ A+I N+
Sbjct: 376 IVKGMEGAINAKTVTYDFERLMDGAKLLKCSEFGDAIIENM 416
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus
subtilis [TaxId: 1423]}
Length = 423
Score = 90.1 bits (223), Expect = 6e-23
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 35 GGAGVVAGASWSPE--CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGD 92
GG G+ GA+ + E +FE T + G + NP++++L +L H+ D
Sbjct: 322 GGIGIAPGANINYETGHAIFEA-THGTAPKYAGLDKVNPSSVILSGVLLLEHLGWNEAAD 380
Query: 93 MIRNAVNRVLKAGKV-----RTKDLGGQSTTQEYTYAVIANL 129
++ ++ + + + V R D + E+ +I N+
Sbjct: 381 LVIKSMEKTIASKVVTYDFARLMDGATEVKCSEFGEELIKNM 422
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thiobacillus ferrooxidans [TaxId: 920]}
Length = 357
Score = 88.2 bits (218), Expect = 2e-22
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 33 LVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYYG 91
L G G++ AS ++EP + + G++ ANP A +L ML H +N + +
Sbjct: 255 LTGSIGMLPSASLGEGRAMYEP-IHGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPWA 313
Query: 92 DMIRNAVNRVLKAGKVRTKDLGGQST----TQEYTYAVIANLK 130
+ AV RVL G +RT D+ T T+ AV+ L
Sbjct: 314 QRVEAAVQRVLDQG-LRTADIAAPGTPVIGTKAMGAAVVNALN 355
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH
{Bacillus coagulans [TaxId: 1398]}
Length = 356
Score = 87.9 bits (217), Expect = 3e-22
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 33 LVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYYG 91
+ G G++ AS + + + G+ ANP +L + ML + L+
Sbjct: 255 ITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVLSAALMLRYSFGLEKEA 314
Query: 92 DMIRNAVNRVLKAGKVRTKDL----GGQSTTQEYTYAVIANL 129
I AV+ VL+ G T DL G +T E T +I L
Sbjct: 315 AAIEKAVDDVLQDG-YCTGDLQVANGKVVSTIELTDRLIEKL 355
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 336
Score = 85.3 bits (210), Expect = 2e-21
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 33 LVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHV------- 85
+ G G+ A+ + +FEP + A GKN+ NPTA LL + M +
Sbjct: 233 IAGSLGIAPSANIGDKKALFEPVHGAAFDIA-GKNIGNPTAFLLSVSMMYERMYELSNDD 291
Query: 86 NLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANL 129
+ NA+ V K K T D+GG +TT + + L
Sbjct: 292 RYIKASRALENAIYLVYKERKALTPDVGGNATTDDLINEIYNKL 335
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Salmonella typhimurium [TaxId: 90371]}
Length = 363
Score = 79.0 bits (194), Expect = 5e-19
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 33 LVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYYG 91
+ G G++ AS + + A + + GKN+ANP A +L +L + ++
Sbjct: 260 ITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDANDAA 319
Query: 92 DMIRNAVNRVLKAGKVRTKDLGG---QSTTQEYTYAVIANLK 130
I A+NR L+ G VRT DL +T E + +
Sbjct: 320 TAIEQAINRALEEG-VRTGDLARGAAAVSTDEMGDIIARYVA 360
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 414
Score = 78.0 bits (191), Expect = 1e-18
Identities = 24/124 (19%), Positives = 39/124 (31%), Gaps = 27/124 (21%)
Query: 33 LVGGAGVVAGASWSPECVVFEPGARHTYSEAV-------GKNVANPTAMLLCSTKMLSHV 85
G G++ P+ E A H + NP A + T+ L+H
Sbjct: 284 GYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHR 343
Query: 86 -------NLQYYGDMIRNAVNRVLKAGKVRTKDLGGQS------------TTQEYTYAVI 126
L ++ + + ++AG TKDL T E+ +
Sbjct: 344 AKLDNNKELAFFANALEEVSIETIEAGF-MTKDLAACIKGLPNVQRSDYLNTFEFMDKLG 402
Query: 127 ANLK 130
NLK
Sbjct: 403 ENLK 406
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 337
Score = 77.6 bits (190), Expect = 1e-18
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 16/103 (15%)
Query: 33 LVGGAGVVAGAS---WSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQY 89
+ GG G+ A + +FEP + G+ +A+PTA ++ +LSH+
Sbjct: 245 VCGGIGLAASGNIDATRANPSMFEPVHGSAP-DIAGQGIADPTAAIMSVALLLSHLGEHD 303
Query: 90 YGDMIRNAVNRVLK---AGKVRTKDLGGQSTTQEYTYAVIANL 129
+ AV L + ++ T D+G + A L
Sbjct: 304 AAARVDRAVEAHLATRGSERLATSDVGE---------RIAAAL 337
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thermotoga maritima [TaxId: 2336]}
Length = 362
Score = 75.1 bits (184), Expect = 1e-17
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 33 LVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYYG 91
L G G++ AS+ + + G + + GKN+ANP A +L ML H +
Sbjct: 260 LPGSLGLLPSASFGDKNLYEPAG--GSAPDIAGKNIANPIAQILSLAMMLEHSFGMVEEA 317
Query: 92 DMIRNAVNRVLKAGKVRTKDLGGQS----TTQEYTYAVIANLK 130
I AV V++ G RT+D+ +T + + L+
Sbjct: 318 RKIERAVELVIEEG-YRTRDIAEDPEKAVSTSQMGDLICKKLE 359
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 413
Score = 73.3 bits (179), Expect = 5e-17
Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 28/125 (22%)
Query: 33 LVGGAGVVAGASWSPECVVFEPGARHTY-------SEAVGKNVANPTAMLLCSTKMLSHV 85
G G++ P+ E A H + NP A + T+ L H
Sbjct: 284 GFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHR 343
Query: 86 -------NLQYYGDMIRNAVNRVLKAGKVRTKDLGGQS-------------TTQEYTYAV 125
+L + + +++G TKDL G T ++ +
Sbjct: 344 GKLDGNQDLIRFAQTLEKVCVETVESGA-MTKDLAGCIHGLSNVKLNEHFLNTSDFLDTI 402
Query: 126 IANLK 130
+NL
Sbjct: 403 KSNLD 407
>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP
oxidase) {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 201
Score = 27.4 bits (60), Expect = 0.48
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 60 YSEAVGKNVANPTAMLLCSTK----MLSHVNLQYYGD 92
++A V+ P AM+L + + V + +
Sbjct: 26 LNDAQRAGVSEPNAMVLATVADGKPVTRSVLCKILDE 62
>d1ni9a_ e.7.1.2 (A:) Glycerol metabolism protein GlpX {Escherichia
coli [TaxId: 562]}
Length = 328
Score = 27.1 bits (60), Expect = 0.60
Identities = 8/51 (15%), Positives = 14/51 (27%)
Query: 35 GGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHV 85
G A +A + + + VG + L L +V
Sbjct: 98 GQANALAVLAVGDKGCFLNAPDMYMEKLIVGPGAKGTIDLNLPLADNLRNV 148
>d1of8a_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate
synthase (DAHP synthase, AroG) {Baker's yeast
(Saccharomyces cerevisiae), tyrosine-regulated isozyme
[TaxId: 4932]}
Length = 346
Score = 26.7 bits (59), Expect = 0.93
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 75 LLCSTKMLSHVNLQYYGDMIR 95
L ++ML ++ QY D++
Sbjct: 131 LPIGSEMLDTISPQYLADLVS 151
>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445)
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 274
Score = 24.1 bits (52), Expect = 6.2
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 84 HVNLQYYGDMIRNAVNRVLKAGKVRTKDLGGQSTTQEYTYAVIANL 129
NL Y ++++++ ++ AGK+R + + V NL
Sbjct: 57 FENLTMYSEVLQDSTFDLIDAGKLRFASGSSITLSPRRNADVFGNL 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.376
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 444,179
Number of extensions: 16986
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 17
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.5 bits)