BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9339
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|B Chain B, Tubulin Tyrosine Ligase
pdb|3TIN|A Chain A, Tubulin Tyrosine Ligase
Length = 380
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 9/147 (6%)
Query: 33 GGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQK-HG 91
G +KFD+R +VLV + YL++ G R + Y T +M HLTN +QK H
Sbjct: 198 GHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSD--TNFQDMTSHLTNHCIQKEHS 253
Query: 92 ADYNNIH-GGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMAN---DKH 147
+Y G +M + YL ++ ++ N + I +I L + ++ H
Sbjct: 254 KNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKYLPYH 313
Query: 148 CFECYGYDIIIDNQLKPWLIEVNASPS 174
F+ +G+D ++D LK WLIEVN +P+
Sbjct: 314 SFQLFGFDFMVDKNLKVWLIEVNGAPA 340
>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 384
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 33 GGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQK-HG 91
G +KFD+R +VLV YL++ G R + Y N + HLTN +QK +
Sbjct: 195 GHRKFDIRSWVLVDHL--YNIYLYREGVLRTSSEPY--NSANFQDKTCHLTNHCIQKEYS 250
Query: 92 ADYNNIH-GGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMANDKH--- 147
+Y G +M + YL + N + I +I L + ++ KH
Sbjct: 251 KNYGRYEEGNEMFFEEFNQYLMDALNTTLENSILLQIKHIIRSCLMCIEPAIST-KHLHY 309
Query: 148 -CFECYGYDIIIDNQLKPWLIEVNASPS 174
F+ +G+D ++D +LK WLIEVN +P+
Sbjct: 310 QSFQLFGFDFMVDEELKVWLIEVNGAPA 337
>pdb|4DCI|A Chain A, Crystal Structure Of Unknown Funciton Protein From
Synechococcus Sp. Wh 8102
pdb|4DCI|B Chain B, Crystal Structure Of Unknown Funciton Protein From
Synechococcus Sp. Wh 8102
pdb|4DCI|C Chain C, Crystal Structure Of Unknown Funciton Protein From
Synechococcus Sp. Wh 8102
pdb|4DCI|D Chain D, Crystal Structure Of Unknown Funciton Protein From
Synechococcus Sp. Wh 8102
pdb|4DCI|E Chain E, Crystal Structure Of Unknown Funciton Protein From
Synechococcus Sp. Wh 8102
pdb|4DCI|F Chain F, Crystal Structure Of Unknown Funciton Protein From
Synechococcus Sp. Wh 8102
pdb|4DCI|G Chain G, Crystal Structure Of Unknown Funciton Protein From
Synechococcus Sp. Wh 8102
pdb|4DCI|H Chain H, Crystal Structure Of Unknown Funciton Protein From
Synechococcus Sp. Wh 8102
Length = 150
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 186 ISPAEKLLATADDLYKNLEETVFKLNAE-LGPKVQEQLAEVVKKA---KSSLEEMKKNLV 241
I+ A++ LA + + + + V + +A L P+VQEQ+A + ++ +S LEE K+NL+
Sbjct: 38 IANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLL 97
Query: 242 DALPVVFESSED 253
V E D
Sbjct: 98 QQQAQVRELEXD 109
>pdb|1YQF|A Chain A, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|B Chain B, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|C Chain C, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|D Chain D, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|E Chain E, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|F Chain F, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
Length = 203
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 62 RFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDI-- 119
R+ T + D + N++V++T + Q AD + I G++ L N+R Y E+ KD
Sbjct: 79 RYSTNQ-DSDKANSHNIFVYITQKNGQTMQADLS-IEEGELVLNNIRFYDEAALAKDTGA 136
Query: 120 -----TNKLFTNISWLIVHSL 135
N+L+T +VH L
Sbjct: 137 EAEAKRNELYTGP---LVHEL 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,045,046
Number of Sequences: 62578
Number of extensions: 278569
Number of successful extensions: 807
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 794
Number of HSP's gapped (non-prelim): 18
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)