Query psy9339
Match_columns 258
No_of_seqs 183 out of 1147
Neff 6.8
Searched_HMMs 46136
Date Sat Aug 17 00:46:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9339.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9339hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03133 TTL: Tubulin-tyrosine 100.0 5.5E-46 1.2E-50 336.7 10.3 182 14-204 95-285 (292)
2 KOG2156|consensus 100.0 1.4E-44 3E-49 339.6 14.8 178 12-191 328-518 (662)
3 KOG2157|consensus 100.0 8.6E-39 1.9E-43 305.7 13.1 175 13-188 236-416 (497)
4 KOG2158|consensus 100.0 1.2E-30 2.6E-35 243.0 7.7 168 16-185 253-438 (565)
5 KOG2155|consensus 99.8 4.8E-20 1E-24 171.6 7.3 151 17-179 443-604 (631)
6 PF14398 ATPgrasp_YheCD: YheC/ 99.7 3.1E-16 6.6E-21 140.9 15.1 139 5-180 101-240 (262)
7 PF08443 RimK: RimK-like ATP-g 97.9 4.2E-05 9.1E-10 65.3 7.8 44 124-177 130-173 (190)
8 TIGR00768 rimK_fam alpha-L-glu 97.6 0.00023 4.9E-09 63.1 8.4 27 151-177 234-260 (277)
9 PRK10446 ribosomal protein S6 97.5 0.00034 7.3E-09 63.8 8.2 25 151-176 244-268 (300)
10 PF07478 Dala_Dala_lig_C: D-al 97.4 0.0006 1.3E-08 59.1 8.0 52 120-179 130-181 (203)
11 PLN02941 inositol-tetrakisphos 97.4 0.0015 3.3E-08 60.8 10.1 31 149-179 278-310 (328)
12 COG1181 DdlA D-alanine-D-alani 97.2 0.00081 1.7E-08 62.3 6.6 53 119-179 239-292 (317)
13 PRK14570 D-alanyl-alanine synt 97.0 0.0021 4.6E-08 60.5 7.7 53 120-180 270-323 (364)
14 PRK14568 vanB D-alanine--D-lac 96.9 0.0027 5.8E-08 59.1 7.5 52 120-179 265-316 (343)
15 TIGR02291 rimK_rel_E_lig alpha 96.9 0.0018 3.8E-08 60.0 6.2 46 122-176 228-273 (317)
16 PRK01966 ddl D-alanyl-alanine 96.8 0.0032 6.9E-08 58.3 7.1 52 120-179 256-307 (333)
17 PRK14569 D-alanyl-alanine synt 96.8 0.0039 8.5E-08 56.8 7.0 50 122-179 222-271 (296)
18 COG0189 RimK Glutathione synth 96.7 0.0064 1.4E-07 56.4 7.9 29 148-177 265-293 (318)
19 TIGR01205 D_ala_D_alaTIGR D-al 96.5 0.0064 1.4E-07 55.3 6.8 51 121-179 241-291 (315)
20 PRK01372 ddl D-alanine--D-alan 96.5 0.0083 1.8E-07 54.3 7.2 51 121-179 226-276 (304)
21 PRK14571 D-alanyl-alanine synt 96.5 0.0069 1.5E-07 55.0 6.7 50 121-179 222-271 (299)
22 PRK05246 glutathione synthetas 96.3 0.011 2.5E-07 54.3 6.8 23 17-44 192-214 (316)
23 PF14397 ATPgrasp_ST: Sugar-tr 96.2 0.01 2.3E-07 54.0 6.3 28 149-177 235-264 (285)
24 PRK14572 D-alanyl-alanine synt 96.2 0.013 2.8E-07 54.6 7.0 51 120-179 271-321 (347)
25 PRK14573 bifunctional D-alanyl 96.0 0.021 4.5E-07 59.1 7.7 52 120-179 711-762 (809)
26 PF02655 ATP-grasp_3: ATP-gras 95.8 0.018 3.9E-07 47.8 5.3 27 147-174 133-159 (161)
27 TIGR02144 LysX_arch Lysine bio 95.6 0.022 4.8E-07 50.8 5.4 27 151-177 232-258 (280)
28 PF13535 ATP-grasp_4: ATP-gras 94.5 0.11 2.4E-06 42.7 6.2 43 125-174 138-180 (184)
29 TIGR03103 trio_acet_GNAT GNAT- 94.2 0.073 1.6E-06 52.9 5.3 51 119-178 475-527 (547)
30 PRK13789 phosphoribosylamine-- 93.4 0.33 7.2E-06 46.7 8.1 29 148-176 270-298 (426)
31 PLN02257 phosphoribosylamine-- 93.2 0.43 9.3E-06 46.1 8.6 32 148-179 264-296 (434)
32 PRK06524 biotin carboxylase-li 92.6 0.33 7.1E-06 47.7 6.7 50 121-175 275-325 (493)
33 TIGR01161 purK phosphoribosyla 92.5 0.61 1.3E-05 43.2 8.2 48 121-176 221-268 (352)
34 TIGR01380 glut_syn glutathione 92.2 0.53 1.2E-05 43.3 7.4 23 17-44 191-213 (312)
35 PRK06111 acetyl-CoA carboxylas 90.7 0.59 1.3E-05 44.7 6.3 47 121-175 249-295 (450)
36 TIGR00514 accC acetyl-CoA carb 89.7 0.82 1.8E-05 44.0 6.3 47 121-175 249-295 (449)
37 COG1821 Predicted ATP-utilizin 89.7 0.74 1.6E-05 41.6 5.4 44 146-192 231-274 (307)
38 PLN02948 phosphoribosylaminoim 89.5 0.86 1.9E-05 45.7 6.5 48 120-175 245-292 (577)
39 TIGR01435 glu_cys_lig_rel glut 89.4 0.53 1.1E-05 48.5 5.0 49 119-176 659-715 (737)
40 TIGR01142 purT phosphoribosylg 89.1 0.92 2E-05 42.3 6.0 47 121-176 229-275 (380)
41 PRK13790 phosphoribosylamine-- 88.9 1.2 2.6E-05 42.0 6.7 26 149-175 227-252 (379)
42 PRK08591 acetyl-CoA carboxylas 88.4 1.1 2.4E-05 42.9 6.2 47 121-175 249-295 (451)
43 PRK06019 phosphoribosylaminoim 88.3 1.1 2.5E-05 42.0 6.1 47 121-175 223-269 (372)
44 PRK13278 purP 5-formaminoimida 88.3 1.1 2.5E-05 42.2 6.0 51 121-173 262-312 (358)
45 PRK05586 biotin carboxylase; V 88.2 1.2 2.7E-05 42.8 6.4 48 121-176 249-296 (447)
46 PRK09288 purT phosphoribosylgl 87.9 1.2 2.7E-05 41.6 6.1 46 121-175 242-287 (395)
47 PRK12458 glutathione synthetas 87.4 2.3 5E-05 39.7 7.5 21 149-174 279-300 (338)
48 PRK06849 hypothetical protein; 87.4 0.69 1.5E-05 43.5 4.0 25 150-174 253-277 (389)
49 PRK08462 biotin carboxylase; V 87.2 1.4 3E-05 42.3 6.0 47 121-175 251-297 (445)
50 PRK07178 pyruvate carboxylase 87.1 1.6 3.4E-05 42.5 6.4 48 121-176 248-295 (472)
51 PF15632 ATPgrasp_Ter: ATP-gra 87.0 0.59 1.3E-05 43.7 3.3 28 148-175 256-283 (329)
52 PRK08463 acetyl-CoA carboxylas 86.9 1.5 3.4E-05 42.6 6.3 48 121-176 249-296 (478)
53 PRK07206 hypothetical protein; 84.8 1.9 4.2E-05 40.7 5.7 45 123-175 246-290 (416)
54 PRK13277 5-formaminoimidazole- 84.7 6.2 0.00013 37.4 8.8 88 122-227 270-357 (366)
55 PLN02735 carbamoyl-phosphate s 84.6 2 4.4E-05 46.3 6.3 46 121-174 832-877 (1102)
56 TIGR00877 purD phosphoribosyla 84.6 2.7 5.8E-05 39.9 6.6 26 149-175 267-292 (423)
57 PRK12833 acetyl-CoA carboxylas 84.3 2.3 5E-05 41.3 6.0 48 121-176 251-299 (467)
58 PRK06395 phosphoribosylamine-- 83.8 3.2 6.9E-05 40.1 6.7 50 121-174 245-294 (435)
59 PRK12767 carbamoyl phosphate s 83.7 1.5 3.1E-05 39.9 4.2 25 149-174 247-271 (326)
60 PF01071 GARS_A: Phosphoribosy 83.4 3 6.4E-05 36.1 5.7 28 146-174 163-190 (194)
61 TIGR01235 pyruv_carbox pyruvat 83.0 2.7 5.9E-05 45.5 6.4 48 121-176 249-296 (1143)
62 PRK00885 phosphoribosylamine-- 81.1 4 8.7E-05 38.8 6.3 25 150-175 266-290 (420)
63 PRK14016 cyanophycin synthetas 80.0 2.7 6E-05 43.3 5.0 50 120-178 397-452 (727)
64 TIGR02068 cya_phycin_syn cyano 79.7 1.8 4E-05 45.4 3.7 48 120-176 396-449 (864)
65 PRK02471 bifunctional glutamat 79.2 1.8 4E-05 44.8 3.4 49 119-176 673-729 (752)
66 KOG2158|consensus 79.0 0.51 1.1E-05 45.8 -0.6 41 145-186 11-51 (565)
67 PF04174 CP_ATPgrasp_1: A circ 79.0 1.8 3.9E-05 40.5 3.0 25 148-172 67-91 (330)
68 PF05770 Ins134_P3_kin: Inosit 77.8 3 6.5E-05 38.6 4.1 31 149-179 263-295 (307)
69 PF07065 D123: D123; InterPro 76.2 19 0.00041 33.2 8.8 24 149-172 214-238 (299)
70 PRK08654 pyruvate carboxylase 75.9 7.7 0.00017 38.2 6.6 47 121-176 249-295 (499)
71 PLN02735 carbamoyl-phosphate s 75.8 6 0.00013 42.8 6.2 47 121-174 275-322 (1102)
72 PRK12999 pyruvate carboxylase; 75.0 7.3 0.00016 42.3 6.7 48 121-176 253-300 (1146)
73 PRK05784 phosphoribosylamine-- 73.1 8.6 0.00019 37.8 6.2 51 121-174 260-311 (486)
74 PRK05294 carB carbamoyl phosph 70.5 9.5 0.00021 41.1 6.2 45 121-174 798-842 (1066)
75 TIGR01369 CPSaseII_lrg carbamo 66.4 12 0.00027 40.1 6.1 45 121-174 798-842 (1050)
76 PRK02186 argininosuccinate lya 65.8 14 0.0003 39.0 6.2 45 122-174 234-278 (887)
77 KOG2157|consensus 65.5 4.3 9.4E-05 40.0 2.3 57 10-70 255-311 (497)
78 COG1489 SfsA DNA-binding prote 64.5 8.3 0.00018 34.3 3.6 77 152-229 114-205 (235)
79 COG2232 Predicted ATP-dependen 63.3 5.7 0.00012 37.3 2.5 24 152-176 254-277 (389)
80 PF02786 CPSase_L_D2: Carbamoy 60.2 29 0.00064 30.1 6.3 47 121-175 135-182 (211)
81 PRK05294 carB carbamoyl phosph 57.7 23 0.0005 38.2 6.2 47 121-174 258-305 (1066)
82 PF03749 SfsA: Sugar fermentat 55.3 16 0.00035 32.0 3.8 77 152-229 104-194 (215)
83 PF14243 DUF4343: Domain of un 55.2 22 0.00047 28.5 4.3 26 150-175 93-118 (130)
84 PRK12815 carB carbamoyl phosph 54.7 28 0.0006 37.6 6.2 45 122-175 797-841 (1068)
85 PRK12815 carB carbamoyl phosph 54.6 27 0.00058 37.7 6.1 46 121-174 258-304 (1068)
86 TIGR01369 CPSaseII_lrg carbamo 52.9 31 0.00067 37.2 6.2 47 121-175 257-304 (1050)
87 COG2308 Uncharacterized conser 50.8 18 0.0004 35.2 3.7 50 15-67 401-457 (488)
88 PF04556 DpnII: DpnII restrict 50.7 12 0.00027 34.2 2.4 23 152-174 196-218 (286)
89 TIGR02712 urea_carbox urea car 50.2 23 0.00049 38.8 4.7 47 121-175 247-294 (1201)
90 PF02750 Synapsin_C: Synapsin, 49.8 18 0.00038 31.5 3.1 25 148-172 153-177 (203)
91 TIGR00230 sfsA sugar fermentat 49.3 22 0.00048 31.6 3.8 77 152-230 117-207 (232)
92 PRK14535 cysS cysteinyl-tRNA s 42.1 29 0.00062 35.7 3.7 24 152-175 62-85 (699)
93 COG0754 Gsp Glutathionylspermi 38.3 1.2E+02 0.0026 28.9 6.9 24 149-172 96-120 (387)
94 PF13635 DUF4143: Domain of un 34.4 36 0.00079 25.0 2.4 19 153-171 71-89 (90)
95 KOG2983|consensus 31.4 39 0.00084 30.9 2.4 22 150-171 229-250 (334)
96 COG4770 Acetyl/propionyl-CoA c 30.3 1.4E+02 0.003 30.3 6.2 49 120-176 248-296 (645)
97 PF13020 DUF3883: Domain of un 30.1 51 0.0011 24.3 2.6 24 150-173 27-51 (91)
98 COG0439 AccC Biotin carboxylas 28.8 1.1E+02 0.0024 29.9 5.2 23 154-176 274-296 (449)
99 PF02222 ATP-grasp: ATP-grasp 28.7 2.6E+02 0.0057 23.4 7.0 49 120-176 115-164 (172)
100 PHA02117 glutathionylspermidin 28.4 46 0.001 31.9 2.6 22 150-171 106-128 (397)
101 COG0458 CarB Carbamoylphosphat 26.3 58 0.0013 31.3 2.8 23 154-176 270-293 (400)
102 PRK00347 putative DNA-binding 25.3 75 0.0016 28.2 3.2 78 152-230 117-209 (234)
103 COG0151 PurD Phosphoribosylami 25.3 2.9E+02 0.0063 26.9 7.3 50 121-174 240-290 (428)
104 COG4443 Uncharacterized protei 23.0 32 0.00069 24.6 0.3 15 28-42 28-44 (72)
105 PF02955 GSH-S_ATP: Prokaryoti 22.7 54 0.0012 27.7 1.7 37 17-66 69-105 (173)
106 PF07494 Reg_prop: Two compone 22.6 84 0.0018 17.3 2.0 13 154-166 8-20 (24)
107 PF02041 Auxin_BP: Auxin bindi 21.1 1.1E+02 0.0024 25.6 3.2 26 36-62 117-142 (167)
108 PHA02762 hypothetical protein; 21.0 1.1E+02 0.0023 21.1 2.5 22 155-176 2-23 (62)
109 KOG4276|consensus 20.9 74 0.0016 24.7 1.9 49 36-88 11-63 (113)
110 PF10340 DUF2424: Protein of u 20.8 94 0.002 29.7 3.1 33 33-65 99-138 (374)
111 COG5321 Uncharacterized protei 20.2 87 0.0019 25.7 2.3 16 157-172 55-70 (164)
No 1
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=100.00 E-value=5.5e-46 Score=336.74 Aligned_cols=182 Identities=38% Similarity=0.685 Sum_probs=103.0
Q ss_pred cccccceeeeccccCccccCCceeeEEEEEEEeeccCcEEEEEcceEEeecccCCCCCcccccccccccccccccccCC-
Q psy9339 14 AAKIIFKIVNIEEEDMTVVGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGA- 92 (258)
Q Consensus 14 ~~~~~~~IvQkYI~~PlLi~grKFDiR~yVLvts~~Pl~vyly~~g~vR~a~~~y~~~~~~l~~~~~HLTN~siqk~~~- 92 (258)
.....++|||+||+||+|++|||||||+||||||++|++||+|++||+|+|+.+|++...++.|.++||||+++|+..+
T Consensus 95 ~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts~~pl~vy~y~~g~vR~~~~~Y~~~~~~~~~~~~HlTN~~i~k~~~~ 174 (292)
T PF03133_consen 95 KNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTSLNPLRVYLYKEGYVRFASEPYDPDLDDLSDRFAHLTNYSIQKKSES 174 (292)
T ss_dssp CCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T--T--EEEES--EEEE-SS---------------------------
T ss_pred hhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEeeccceeeeeccCceEEeccceeecccccccccccccccccccccccc
Confidence 3567899999999999999999999999999999999999999999999999999865678899999999999999843
Q ss_pred --CC-CcccCCccCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHh-----hhhhccCCCcceeecceEEEeCCCce
Q psy9339 93 --DY-NNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSV-----SYIMANDKHCFECYGYDIIIDNQLKP 164 (258)
Q Consensus 93 --~~-~~~~g~~~sl~~l~~~l~~~~g~~~~~~i~~~Ik~ii~~~l~a~-----~~~l~~~~~~FellG~DfllD~~~kp 164 (258)
++ ....|++|++..++.++.. |.+ .+.+|++|..+++.++.++ ...+....+|||+||+|||+|++++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~--~~~-~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~Fel~G~DfmlD~~~kp 251 (292)
T PF03133_consen 175 NEEDSNEENGNKWSLDQFEEYLKE--GID-WEKIWEKICDIIIKTILAAEFRSSQPNMPPRPNCFELFGFDFMLDEDLKP 251 (292)
T ss_dssp ---------EEEHHHHHHHCTTTS--SS--STTTCHHHHHHHHHHHHHH-HHHHH--TTSSSEE-EEEEEEEEEBTTS-E
T ss_pred ccccccccccccchhhhhhhhccc--CCC-cccchhhhhHHHHHHhhhhhhhhccccccccccccceeeeEEEecCCCeE
Confidence 22 2235789999999988875 344 3667888888888877777 33455678999999999999999999
Q ss_pred EEEEeccCCCCCcCCccchhhhhhHHHHHHHHHHHHHhhh
Q psy9339 165 WLIEVNASPSLTCTTVNDRILISPAEKLLATADDLYKNLE 204 (258)
Q Consensus 165 wLLEVN~~P~l~~~~~~d~~~K~~~~~ll~~~~~~~~~~~ 204 (258)
||||||.+|++..+++.+..++. +| ++|+++.++
T Consensus 252 wLLEvN~~Psl~~~~~~~~~~~~---~l---i~d~l~i~v 285 (292)
T PF03133_consen 252 WLLEVNSNPSLSTSTPVDKELKP---QL---IDDLLKIVV 285 (292)
T ss_dssp EEEEEESS------TTTHHHHHH---HH---HHHTTTTTS
T ss_pred EEeeCCCCCCcccCCHhHHHHHH---HH---HHHHhEEEe
Confidence 99999999999888876544433 22 355555443
No 2
>KOG2156|consensus
Probab=100.00 E-value=1.4e-44 Score=339.56 Aligned_cols=178 Identities=39% Similarity=0.632 Sum_probs=161.2
Q ss_pred hccccccceeeeccccCccccCCceeeEEEEEEEeeccCcEEEEEcceEEeecccCCCCCcccccccccccccccccccC
Q psy9339 12 SEAAKIIFKIVNIEEEDMTVVGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHG 91 (258)
Q Consensus 12 ~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yVLvts~~Pl~vyly~~g~vR~a~~~y~~~~~~l~~~~~HLTN~siqk~~ 91 (258)
+..++.++.|||+||++|+||+|.|||+|+||+||+++|+|||+|++||+|||+.+|++..+++.|.+||+|||++++.+
T Consensus 328 ~q~pk~rpLvvQ~yieRP~ling~KFDlrlYv~vts~nPLRIy~y~dgL~RFasvkYsp~~a~~~dKymhltnYs~nke~ 407 (662)
T KOG2156|consen 328 SQFPKDRPLVVQKYIERPLLINGSKFDLRLYVVVTSVNPLRIYIYNDGLVRFASVKYSPFDANNVDKYMHLTNYSPNKES 407 (662)
T ss_pred hhCCCcccHHHHHHhhcceeecCcceeEEEEEEEeecCceEEEEeccceeeeccccCCcccccccceeEEeccccccccc
Confidence 45677788899999999999999999999999999999999999999999999999999889999999999999999965
Q ss_pred C-----CCCcccCCccCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhhhh--------ccCCCcceeecceEEE
Q psy9339 92 A-----DYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIM--------ANDKHCFECYGYDIII 158 (258)
Q Consensus 92 ~-----~~~~~~g~~~sl~~l~~~l~~~~g~~~~~~i~~~Ik~ii~~~l~a~~~~l--------~~~~~~FellG~Dfll 158 (258)
. +|+..+|++|++.+++.++++ .|.+ .++||++|+.+|++++.+.++.+ .+...|||+|||||++
T Consensus 408 ~ys~~k~~n~~~g~kwtl~~lw~~l~~-qGvd-t~kIW~qir~iV~kti~s~E~~i~~~lr~~~~~~~~CfELfgFDiil 485 (662)
T KOG2156|consen 408 NYSLNKYFNACQGSKWTLKSLWLYLDN-QGVD-TDKIWEQIRNIVIKTIISGEKGINSMLRNYVENPYSCFELFGFDIIL 485 (662)
T ss_pred hhhhhhHHhhcCCchhhHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHhhccChhHHHHHHHHhcCCchhhhhhcceEEe
Confidence 4 455678999999999999986 4777 79999999999999999987643 2467899999999999
Q ss_pred eCCCceEEEEeccCCCCCcCCccchhhhhhHHH
Q psy9339 159 DNQLKPWLIEVNASPSLTCTTVNDRILISPAEK 191 (258)
Q Consensus 159 D~~~kpwLLEVN~~P~l~~~~~~d~~~K~~~~~ 191 (258)
|++++|||||||.+|+++..+++|-.+|..+.+
T Consensus 486 DedLkpwLlEVNISPSLhS~tpld~~vk~~li~ 518 (662)
T KOG2156|consen 486 DEDLKPWLLEVNISPSLHSETPLDCSVKAPLIQ 518 (662)
T ss_pred cCccceeeEEEecccccccCCCccchhhhHHHH
Confidence 999999999999999999999999888876433
No 3
>KOG2157|consensus
Probab=100.00 E-value=8.6e-39 Score=305.73 Aligned_cols=175 Identities=42% Similarity=0.580 Sum_probs=158.5
Q ss_pred ccccccceeeeccccCccccCCceeeEEEEEEEeeccCcEEEEEcceEEeecccCCCCCcccccccccccccccccccCC
Q psy9339 13 EAAKIIFKIVNIEEEDMTVVGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGA 92 (258)
Q Consensus 13 ~~~~~~~~IvQkYI~~PlLi~grKFDiR~yVLvts~~Pl~vyly~~g~vR~a~~~y~~~~~~l~~~~~HLTN~siqk~~~ 92 (258)
..+....++||+||++|++++|+|||||.||+||+.+|+.+|.|++|++|+|+.+|++ ..+++|.++||||++|||+++
T Consensus 236 s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~~~pl~~y~yreg~lRf~t~~y~~-~~nl~n~~~HLtN~siqK~~~ 314 (497)
T KOG2157|consen 236 SENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTHFDPLLLYRYREGFLRFSTEPYGP-LVNLQNMSVHLTNVSIQKLYP 314 (497)
T ss_pred cccccccceeeeeccCccccCCceeeeeEEEEeecccchhheeeccceEEEEeccCcc-hhhhcccchhhhccccccCCC
Confidence 3355678999999999999999999999999999999999999999999999999997 889999999999999999999
Q ss_pred CCCcc-----cCCccCHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEE
Q psy9339 93 DYNNI-----HGGKMNLQNLRLYLEST-RGKDITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWL 166 (258)
Q Consensus 93 ~~~~~-----~g~~~sl~~l~~~l~~~-~g~~~~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwL 166 (258)
+|... +|++|++..++.|++.. .+..+....+..|...|+.++.+++..+...++|||+||+|||+|++++|||
T Consensus 315 ~~~~~~s~~~~~~~w~~~~~~~yl~~~~~~~~~~~~~i~~~~~~iv~~v~~s~~~~~~~~n~FElyG~DfliD~~lkpwL 394 (497)
T KOG2157|consen 315 NYCHLSSLLSESCKWTLNSLLLYLRNIGSPCLELKLQIKPIITGIVLSVFASATTVPSLANCFELYGFDFLIDEALKPWL 394 (497)
T ss_pred CcccccccccCCCcccHHHHHHHHHhhcCCcccccccchhhhhhhhhhhhhhccccccccchhhhhCcceeecCCCCeEE
Confidence 98765 79999999999999862 2334456678888888999999998888888999999999999999999999
Q ss_pred EEeccCCCCCcCCccchhhhhh
Q psy9339 167 IEVNASPSLTCTTVNDRILISP 188 (258)
Q Consensus 167 LEVN~~P~l~~~~~~d~~~K~~ 188 (258)
||||++|++.+++..|..++..
T Consensus 395 iEiNssP~~~~t~~~d~~l~~~ 416 (497)
T KOG2157|consen 395 IEINASPDLTQTTKNDARLKSK 416 (497)
T ss_pred EEeecCCcccccchhhhHHHHH
Confidence 9999999999999988777664
No 4
>KOG2158|consensus
Probab=99.96 E-value=1.2e-30 Score=242.98 Aligned_cols=168 Identities=30% Similarity=0.481 Sum_probs=148.0
Q ss_pred cccceeeeccccCcccc-CCceeeEEEEEEEeeccCcEEEEEcceEEeecccCCCC-CcccccccccccccccccccCCC
Q psy9339 16 KIIFKIVNIEEEDMTVV-GGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDK-NITELDNMYVHLTNVSVQKHGAD 93 (258)
Q Consensus 16 ~~~~~IvQkYI~~PlLi-~grKFDiR~yVLvts~~Pl~vyly~~g~vR~a~~~y~~-~~~~l~~~~~HLTN~siqk~~~~ 93 (258)
.-+..++|+||.+|||+ |+.|||+|+|++++|++|+++|++++|++|||+++|.. ..+|..+.+||||||++|+.+.+
T Consensus 253 ~~Q~~~vQeyV~~pLli~dkyKfd~rvy~likSvdPlsIfva~eGlaRFcTeky~ePts~n~~~lymhlTnYslnk~nsn 332 (565)
T KOG2158|consen 253 EYQNKKVQEYVTYPLLISDKYKFDQRVYSLIKSVDPLSIFVASEGLARFCTEKYIEPTSANRSHLYMHLTNYSLNKPNSN 332 (565)
T ss_pred HHHHHHHHHHhcccccccccceeeeeeeeeeeccCcceEEEeccchhhhhhccccCCCcccHHHHHHHHHHhhhcCCCcc
Confidence 33557999999999999 99999999999999999999999999999999999976 46899999999999999999999
Q ss_pred CCcc-----cCCccCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhhhhc-----------cCCCcceeecceEE
Q psy9339 94 YNNI-----HGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMA-----------NDKHCFECYGYDII 157 (258)
Q Consensus 94 ~~~~-----~g~~~sl~~l~~~l~~~~g~~~~~~i~~~Ik~ii~~~l~a~~~~l~-----------~~~~~FellG~Dfl 157 (258)
|... .|+++.++....+++.. |.+ ...+|.+|+.+++++..|.-+.+. ..+.||+++|||++
T Consensus 333 y~hsd~sq~~gSkR~Lsti~~ql~s~-gvd-tk~vwsDik~v~iktvlA~~peLk~~y~~~fp~h~tgpacfqi~gfDi~ 410 (565)
T KOG2158|consen 333 YAHSDNSQVSGSKRQLSTINEQLDSL-GVD-TKFVWSDIKIVFIKTVLAESPELKEDYIDNFPYHKTGPACFQIIGFDIV 410 (565)
T ss_pred ccccCcccccchhHHHHHHHHHHHhc-Cch-HHHHHhhhhhhhcchhhhcCHHHHHHHHHhCCCCCcCCceEEEeccchh
Confidence 8532 48888888888888764 666 688999999999999999876442 35789999999999
Q ss_pred EeCCCceEEEEeccCCCCCcCCccchhh
Q psy9339 158 IDNQLKPWLIEVNASPSLTCTTVNDRIL 185 (258)
Q Consensus 158 lD~~~kpwLLEVN~~P~l~~~~~~d~~~ 185 (258)
.+.++.|.|+|||..|++......|...
T Consensus 411 ~~~k~~pillevnrapslr~~~~vd~e~ 438 (565)
T KOG2158|consen 411 KQRKVLPILLEVNRAPSLRIWKVVDVEE 438 (565)
T ss_pred hccccchHHHHhcccccccccccCCCch
Confidence 9999999999999999999887666554
No 5
>KOG2155|consensus
Probab=99.80 E-value=4.8e-20 Score=171.61 Aligned_cols=151 Identities=23% Similarity=0.251 Sum_probs=120.3
Q ss_pred ccceeeeccccCccccCCceeeEEEEEEEeeccCcEEEEEcceEEeecccCCCCCcccccccccccc--cccccccCCCC
Q psy9339 17 IIFKIVNIEEEDMTVVGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLT--NVSVQKHGADY 94 (258)
Q Consensus 17 ~~~~IvQkYI~~PlLi~grKFDiR~yVLvts~~Pl~vyly~~g~vR~a~~~y~~~~~~l~~~~~HLT--N~siqk~~~~~ 94 (258)
.-+.|||+||++|+|..|-|||||..||+.|++|+++|+|...++|+|..+|+. +++.|...|+| ||-.
T Consensus 443 tgPKiv~kYIe~P~LFr~gKFDlRYiVllrsi~Pl~~yvy~~FWiRfsnn~fsL--~~f~dyEtHFTVmNY~~------- 513 (631)
T KOG2155|consen 443 TGPKIVCKYIERPLLFRNGKFDLRYIVLLRSIAPLTAYVYNRFWIRFSNNEFSL--SNFEDYETHFTVMNYLE------- 513 (631)
T ss_pred cCchHHHHhcCCcceeecCccceEEEEEEccccchhhhheeheeeeecCCccch--hhhhhhhhhhhhhhHHH-------
Confidence 346899999999999988899999999999999999999999999999999975 59999999999 4321
Q ss_pred CcccCCccCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhhhh-----ccCCCcceeecceEEE--eCC--CceE
Q psy9339 95 NNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIM-----ANDKHCFECYGYDIII--DNQ--LKPW 165 (258)
Q Consensus 95 ~~~~g~~~sl~~l~~~l~~~~g~~~~~~i~~~Ik~ii~~~l~a~~~~l-----~~~~~~FellG~Dfll--D~~--~kpw 165 (258)
.=..+..++|..-+++....-.+..+-.+|..+|.+.+.+|+..- ...+++..+||+|+|+ |.. ++|-
T Consensus 514 ---kl~q~~ceeFi~~~ek~yp~~pw~dvq~~i~~aire~~eaaak~~~e~g~a~~p~sramygvDlml~~~~~pVmq~q 590 (631)
T KOG2155|consen 514 ---KLLQMKCEEFIGEFEKGYPCFPWEDVQCSIVPAIREPFEAAAKLNPECGAALLPNSRAMYGVDLMLAGDLTPVMQPQ 590 (631)
T ss_pred ---HHhhccHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHHhhhhccCCcccccCCchhhhhhhheeeeccCCCccccce
Confidence 112345556655555543333356777888888888888876432 2357888999999999 766 8999
Q ss_pred EEEeccCCCCCcCC
Q psy9339 166 LIEVNASPSLTCTT 179 (258)
Q Consensus 166 LLEVN~~P~l~~~~ 179 (258)
|||||.+|++...|
T Consensus 591 ILEVNFnPDc~RAC 604 (631)
T KOG2155|consen 591 ILEVNFNPDCKRAC 604 (631)
T ss_pred eEEEecCcchHHHh
Confidence 99999999997554
No 6
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.70 E-value=3.1e-16 Score=140.90 Aligned_cols=139 Identities=19% Similarity=0.169 Sum_probs=100.1
Q ss_pred HHHHHhhhccccccceeeeccccCccccCCceeeEEEEEEEeeccCcEEEEEcceEEeecccCCCCCccccccccccccc
Q psy9339 5 MLMNVIGSEAAKIIFKIVNIEEEDMTVVGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTN 84 (258)
Q Consensus 5 ~~~~~~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yVLvts~~Pl~vyly~~g~vR~a~~~y~~~~~~l~~~~~HLTN 84 (258)
-|.+.|. +....+.||||++| +...++||+||+|+.|.-... ..|...+..+|+|....- +||
T Consensus 101 ~l~~~l~-~~~~~~~yIiQq~I-~l~~~~gr~fD~RvlvqK~~~---G~W~vtg~~~Rva~~~~i------------vTN 163 (262)
T PF14398_consen 101 ELEQFLK-ELLGKRRYIIQQGI-PLATYDGRPFDFRVLVQKNGS---GKWQVTGIVARVAKPGSI------------VTN 163 (262)
T ss_pred HHHHHHH-HhcCCCcEEEeCCc-cccccCCCeEEEEEEEEECCC---CCEEEEEEEEEEcCCCCc------------eec
Confidence 3555663 33567799999999 466789999999999999763 346779999999987642 566
Q ss_pred ccccccCCCCCcccCCccCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhhhhccCCCc-ceeecceEEEeCCCc
Q psy9339 85 VSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMANDKHC-FECYGYDIIIDNQLK 163 (258)
Q Consensus 85 ~siqk~~~~~~~~~g~~~sl~~l~~~l~~~~g~~~~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~-FellG~DfllD~~~k 163 (258)
.+ .+|..++++++.... .....+..+|.+++..+..+... .... |-.+|+|+++|.+|+
T Consensus 164 ~~----------~GG~~~~~~~~l~~~------~~~~~~~~~l~~~a~~ia~~le~----~~~~~~gElGiDl~iD~~g~ 223 (262)
T PF14398_consen 164 LS----------QGGTALPFEEVLRQS------EEAEKIREELEDLALEIAQALEK----HFGGHLGELGIDLGIDKNGK 223 (262)
T ss_pred cC----------CCceecCHHHHHHhh------hhHHHHHHHHHHHHHHHHHHHHH----hcCCceeEEEEEEEEcCCCC
Confidence 54 246667776653322 11466777777776554444433 3222 777999999999999
Q ss_pred eEEEEeccCCCCCcCCc
Q psy9339 164 PWLIEVNASPSLTCTTV 180 (258)
Q Consensus 164 pwLLEVN~~P~l~~~~~ 180 (258)
+||||||+.|+-.....
T Consensus 224 iWliEvN~kP~~~~~~~ 240 (262)
T PF14398_consen 224 IWLIEVNSKPGKFDFRD 240 (262)
T ss_pred EEEEEEeCCCCcchhhc
Confidence 99999999999876553
No 7
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=97.91 E-value=4.2e-05 Score=65.26 Aligned_cols=44 Identities=25% Similarity=0.470 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCc
Q psy9339 124 FTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTC 177 (258)
Q Consensus 124 ~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~ 177 (258)
-+++++++.++..+. ...+.|+| +++.+..+|++|||.+|.+..
T Consensus 130 ~~e~~~~a~~~~~~l---------gl~~~giD-i~~~~~~~~v~EvN~~~~~~~ 173 (190)
T PF08443_consen 130 PEEIKELALKAARAL---------GLDFAGID-ILDTNDGPYVLEVNPNPGFRG 173 (190)
T ss_dssp -HHHHHHHHHHHHHT---------T-SEEEEE-EEEETTEEEEEEEETT---TT
T ss_pred CHHHHHHHHHHHHHh---------CCCEEEEE-EEecCCCeEEEEecCCchHhH
Confidence 345555554444333 25689999 566667899999999999864
No 8
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=97.64 E-value=0.00023 Score=63.14 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=24.5
Q ss_pred eecceEEEeCCCceEEEEeccCCCCCc
Q psy9339 151 CYGYDIIIDNQLKPWLIEVNASPSLTC 177 (258)
Q Consensus 151 llG~DfllD~~~kpwLLEVN~~P~l~~ 177 (258)
..|+||++|++++||++|||..|++..
T Consensus 234 ~~~vD~~~~~~g~~~viEiN~~p~~~~ 260 (277)
T TIGR00768 234 VVGIDLLESEDRGLLVNEVNPNPEFKN 260 (277)
T ss_pred eEEEEEEEcCCCCeEEEEEcCCcchhh
Confidence 579999999999999999999999753
No 9
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=97.53 E-value=0.00034 Score=63.75 Aligned_cols=25 Identities=48% Similarity=0.687 Sum_probs=23.2
Q ss_pred eecceEEEeCCCceEEEEeccCCCCC
Q psy9339 151 CYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 151 llG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
..|+||+.|+++ ||++|||++|++.
T Consensus 244 ~~gvD~~~~~~g-~~vlEvN~~pg~~ 268 (300)
T PRK10446 244 VAGVDILRANRG-PLVMEVNASPGLE 268 (300)
T ss_pred EEEEEEEEcCCC-cEEEEEECCCChh
Confidence 799999999887 9999999999985
No 10
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=97.43 E-value=0.0006 Score=59.09 Aligned_cols=52 Identities=27% Similarity=0.451 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 120 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 120 ~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
...+..+|++++.+++.+. .|--.-.+||.+|++++||+||||+.|+|...+
T Consensus 130 ~~~~~~~i~~~a~~a~~~l--------g~~~~~RiD~rv~~~g~~~~lEiNt~PGlt~~S 181 (203)
T PF07478_consen 130 SEELQEKIKEIAKKAFKAL--------GCRGYARIDFRVDEDGKPYFLEINTIPGLTPTS 181 (203)
T ss_dssp -HHHHHHHHHHHHHHHHHT--------TTCSEEEEEEEEETTTEEEEEEEESS-G-STTS
T ss_pred CHHHHHHHHHHHHHHHHHH--------cCCCceeEEEEeccCCceEEEeccCcccccCCC
Confidence 4567788888876666553 233456799999999999999999999998665
No 11
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=97.35 E-value=0.0015 Score=60.78 Aligned_cols=31 Identities=16% Similarity=0.416 Sum_probs=26.3
Q ss_pred ceeecceEEEeCC--CceEEEEeccCCCCCcCC
Q psy9339 149 FECYGYDIIIDNQ--LKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 149 FellG~DfllD~~--~kpwLLEVN~~P~l~~~~ 179 (258)
-+++|+|++.|.+ .+.+++|||..|++..-.
T Consensus 278 l~l~GvDvI~~~~~~~~~~VidVN~fP~~k~~p 310 (328)
T PLN02941 278 LRLFNFDMIREHGTGDRYYVIDINYFPGYAKMP 310 (328)
T ss_pred CceEEEEEEeecCCCCceEEEEecCCCccccCC
Confidence 5789999999974 478999999999997554
No 12
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.20 E-value=0.00081 Score=62.30 Aligned_cols=53 Identities=25% Similarity=0.459 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeC-CCceEEEEeccCCCCCcCC
Q psy9339 119 ITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDN-QLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 119 ~~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~-~~kpwLLEVN~~P~l~~~~ 179 (258)
.++.+.++|+++..++.++. .|--+-|+||++|+ .+++||+|||++|.|...+
T Consensus 239 lt~~~~~~i~~lA~~a~~al--------g~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~s 292 (317)
T COG1181 239 LTDEIHEEIKELALRAYKAL--------GCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMS 292 (317)
T ss_pred CCHHHHHHHHHHHHHHHHhc--------CCCceEEEEEEEECCCCCEEEEEEeCCCCCcccc
Confidence 46788899998876666553 45567899999999 8999999999999986555
No 13
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=97.03 E-value=0.0021 Score=60.51 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeC-CCceEEEEeccCCCCCcCCc
Q psy9339 120 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDN-QLKPWLIEVNASPSLTCTTV 180 (258)
Q Consensus 120 ~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~-~~kpwLLEVN~~P~l~~~~~ 180 (258)
.+.+..+|++++.++.++. +|.-+..+||++|. +++||++|||+.|+|...+.
T Consensus 270 ~~e~~~~i~~~A~~~~~aL--------g~~G~~RvDf~l~~~~g~~yvlEiNt~PG~t~~S~ 323 (364)
T PRK14570 270 DTKHLLDIKEYAFLTYKNL--------ELRGMARIDFLIEKDTGLIYLNEINTIPGFTDISM 323 (364)
T ss_pred CHHHHHHHHHHHHHHHHHh--------CCcceEEEEEEEECCCCcEEEEEeeCCCCCCcccH
Confidence 4566677887776666554 34567889999996 59999999999999977653
No 14
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=96.95 E-value=0.0027 Score=59.11 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 120 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 120 ~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
.+.+.++|++++.+++++. .|.-..++||++|+++++|++|||+.|++...+
T Consensus 265 ~~~~~~~i~~~a~~~~~~L--------g~~G~~rvDf~l~~~g~~~llEINt~Pg~t~~S 316 (343)
T PRK14568 265 SAEERSRVQETAKAIYRAL--------GCRGLARVDMFLQEDGTVVLNEVNTLPGFTSYS 316 (343)
T ss_pred CHHHHHHHHHHHHHHHHHh--------CCCcEEEEEEEEeCCCCEEEEEeeCCCCCCccC
Confidence 3556667777765555554 235678899999999999999999999997654
No 15
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=96.94 E-value=0.0018 Score=60.02 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 122 KLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 122 ~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
..|+++.+++.++..+ ..| ...|+|+++|.++.||+||||+.|.+.
T Consensus 228 p~~~el~~la~~A~~~--------~g~-~~~GvDii~~~~~g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 228 PHWERLLELAASCWEL--------TGL-GYMGVDMVLDKEEGPLVLELNARPGLA 273 (317)
T ss_pred hhHHHHHHHHHHHHHh--------cCC-CeEEEEEEEeCCCCEEEEEeCCCCCCC
Confidence 4677777776444332 234 789999999988999999999999996
No 16
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=96.84 E-value=0.0032 Score=58.33 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 120 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 120 ~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
.+.+..+|++++.++..+. +|--..++||++|.+++||+||||+.|++...+
T Consensus 256 ~~~~~~~i~~~a~~~~~aL--------g~~G~~rvDf~~~~~g~~~vlEiNt~Pg~t~~s 307 (333)
T PRK01966 256 SEELTEKIRELAIKAFKAL--------GCSGLARVDFFLTEDGEIYLNEINTMPGFTPIS 307 (333)
T ss_pred CHHHHHHHHHHHHHHHHHh--------CCcceEEEEEEEcCCCCEEEEEeeCCCCCCccc
Confidence 3456667777765555543 223468899999999999999999999997654
No 17
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=96.77 E-value=0.0039 Score=56.80 Aligned_cols=50 Identities=20% Similarity=0.301 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 122 KLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 122 ~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
.+..++++++.+++.+. +|--..++||.+|++++||++|||+.|+|..++
T Consensus 222 ~~~~~i~~~a~~~~~~L--------g~~G~~rvD~~~~~~g~~~vlEIN~~Pg~t~~s 271 (296)
T PRK14569 222 QKELEVRQLAKKAYDLL--------GCSGHARVDFIYDDRGNFYIMEINSSPGMTDNS 271 (296)
T ss_pred HHHHHHHHHHHHHHHHh--------CCceEEEEEEEEcCCCCEEEEEeeCCCCCCCcC
Confidence 34456666655544443 234668899999999999999999999997654
No 18
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.0064 Score=56.36 Aligned_cols=29 Identities=34% Similarity=0.370 Sum_probs=25.2
Q ss_pred cceeecceEEEeCCCceEEEEeccCCCCCc
Q psy9339 148 CFECYGYDIIIDNQLKPWLIEVNASPSLTC 177 (258)
Q Consensus 148 ~FellG~DfllD~~~kpwLLEVN~~P~l~~ 177 (258)
...++|+|++.+ +...+++|||.+|.+..
T Consensus 265 Gl~~~GVDiie~-~~g~~V~EVN~sP~~~~ 293 (318)
T COG0189 265 GLGLVGVDIIED-KDGLYVTEVNVSPTGKG 293 (318)
T ss_pred CCeEEEEEEEec-CCCcEEEEEeCCCcccc
Confidence 478899999999 77789999999997754
No 19
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=96.54 E-value=0.0064 Score=55.25 Aligned_cols=51 Identities=24% Similarity=0.380 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
+.+.++|++++.+++.+.. +.-..++||++|.+++||+||||.+|++...+
T Consensus 241 ~~~~~~i~~~a~~~~~~lg--------~~G~~~vD~~~~~~g~~~viEvN~~pg~~~~s 291 (315)
T TIGR01205 241 EELEEKIKELALKAYKALG--------CRGLARVDFFLDEEGEIYLNEINTIPGMTAIS 291 (315)
T ss_pred HHHHHHHHHHHHHHHHHhC--------CCceEEEEEEEeCCCCEEEEEeeCCCCCCCcc
Confidence 4555666766655555442 12458999999999999999999999998754
No 20
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=96.51 E-value=0.0083 Score=54.32 Aligned_cols=51 Identities=24% Similarity=0.485 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
..+..+|.+++.+++.+.. +.-..++||++|++++||+||||.+|.+...+
T Consensus 226 ~~~~~~l~~~a~~~~~~lg--------~~g~~~iD~~~~~~g~~~viEvN~~p~~~~~~ 276 (304)
T PRK01372 226 AEIEAELQELALKAYRALG--------CRGWGRVDFMLDEDGKPYLLEVNTQPGMTSHS 276 (304)
T ss_pred HHHHHHHHHHHHHHHHHhC--------CcceEEEEEEEcCCCCEEEEEecCCCCCCccc
Confidence 3455566666544444331 12346899999999999999999999997654
No 21
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=96.50 E-value=0.0069 Score=55.01 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
+....+|++++.+++.+. .|.-..++||++| +++||++|||..|++...+
T Consensus 222 ~~~~~~i~~~a~~~~~~l--------g~~g~~rvD~~~~-~~~~~viEiN~~Pg~~~~s 271 (299)
T PRK14571 222 PEEERLVKETALKAFVEA--------GCRGFGRVDGIFS-DGRFYFLEINTVPGLTELS 271 (299)
T ss_pred HHHHHHHHHHHHHHHHHh--------CCCceEEEEEEEE-CCcEEEEEeeCCCCCCccC
Confidence 456666777665555443 2335789999998 5799999999999998655
No 22
>PRK05246 glutathione synthetase; Provisional
Probab=96.28 E-value=0.011 Score=54.28 Aligned_cols=23 Identities=9% Similarity=-0.037 Sum_probs=16.9
Q ss_pred ccceeeeccccCccccCCceeeEEEEEE
Q psy9339 17 IIFKIVNIEEEDMTVVGGKKFDLRLYVL 44 (258)
Q Consensus 17 ~~~~IvQkYI~~PlLi~grKFDiR~yVL 44 (258)
..++++|+||+.+- + -|+|++|+
T Consensus 192 ~~~~lvQ~~I~~~~--~---~D~Rv~vv 214 (316)
T PRK05246 192 REPVMAQRYLPEIK--E---GDKRILLV 214 (316)
T ss_pred CCeEEEEeccccCC--C---CCEEEEEE
Confidence 46899999996321 2 29999876
No 23
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=96.25 E-value=0.01 Score=54.03 Aligned_cols=28 Identities=36% Similarity=0.566 Sum_probs=25.6
Q ss_pred ceeecceEEEeCCCceEEEEeccC--CCCCc
Q psy9339 149 FECYGYDIIIDNQLKPWLIEVNAS--PSLTC 177 (258)
Q Consensus 149 FellG~DfllD~~~kpwLLEVN~~--P~l~~ 177 (258)
+..+|.|+.+|+++ |.|||.|.+ |.+..
T Consensus 235 ~~~iGWDvait~~G-p~llE~N~~~~pgl~~ 264 (285)
T PF14397_consen 235 LGYIGWDVAITEDG-PVLLEGNARWDPGLMI 264 (285)
T ss_pred CCeEEEEEEEcCCC-cEEEEeeCCCCCCcHh
Confidence 57799999999999 999999999 98863
No 24
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=96.23 E-value=0.013 Score=54.60 Aligned_cols=51 Identities=24% Similarity=0.371 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 120 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 120 ~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
.+.+.++|++++.++..+. .|.-..++||+++ +++||++|||+.|.+..++
T Consensus 271 ~~~~~~~i~~~a~~~~~~L--------g~~G~~rvD~~~~-~~~~~vlEiNt~PG~t~~S 321 (347)
T PRK14572 271 SDQEMKRVQELAIRAHESL--------GCKGYSRTDFIIV-DGEPHILETNTLPGMTETS 321 (347)
T ss_pred CHHHHHHHHHHHHHHHHHh--------CCcceeEEEEEEE-CCcEEEEeeeCCCCCCccc
Confidence 3556677777765555443 2446688999997 5899999999999998665
No 25
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.98 E-value=0.021 Score=59.14 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 120 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 120 ~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
.+.+.++|++++.++.++. .|.-...+||++|++++||++|||+.|.|...+
T Consensus 711 ~~~~~~~i~~~a~~~~~aL--------g~~G~~riDf~v~~~g~~yv~EiNt~PG~t~~s 762 (809)
T PRK14573 711 SKESQEQVLELAERIYRLL--------QGKGSCRIDFFLDEEGNFWLSEMNPIPGMTEAS 762 (809)
T ss_pred CHHHHHHHHHHHHHHHHHh--------CCceEEEEEEEEcCCCCEEEEEeeCCCCCCccc
Confidence 4667778888876666554 256778899999999999999999999997655
No 26
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=95.81 E-value=0.018 Score=47.79 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=20.8
Q ss_pred CcceeecceEEEeCCCceEEEEeccCCC
Q psy9339 147 HCFECYGYDIIIDNQLKPWLIEVNASPS 174 (258)
Q Consensus 147 ~~FellG~DfllD~~~kpwLLEVN~~P~ 174 (258)
+..-+.|+||++++ ..||+||||..|.
T Consensus 133 gl~G~~giD~I~~~-~~~~viEINPR~t 159 (161)
T PF02655_consen 133 GLRGYVGIDFILDD-GGPYVIEINPRFT 159 (161)
T ss_dssp T--EEEEEEEEESS--SEEEEEEESS--
T ss_pred CCeeeEeEEEEEeC-CcEEEEEEcCCCC
Confidence 66788999999999 9999999999875
No 27
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=95.60 E-value=0.022 Score=50.80 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=24.9
Q ss_pred eecceEEEeCCCceEEEEeccCCCCCc
Q psy9339 151 CYGYDIIIDNQLKPWLIEVNASPSLTC 177 (258)
Q Consensus 151 llG~DfllD~~~kpwLLEVN~~P~l~~ 177 (258)
..|+||+.|+++.|+++|||..|++..
T Consensus 232 ~~~vD~~~~~~g~~~v~EvN~~p~~~~ 258 (280)
T TIGR02144 232 VVAIDIFESKERGLLVNEVNHVPEFKN 258 (280)
T ss_pred eEEEEEEEcCCCCEEEEEEeCCcchhh
Confidence 789999999999999999999999854
No 28
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=94.48 E-value=0.11 Score=42.68 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCC
Q psy9339 125 TNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPS 174 (258)
Q Consensus 125 ~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~ 174 (258)
+++++.+.+.+.+..- ..-.+++||++|++++.++||||..|+
T Consensus 138 ~~~~~~~~~~~~~~g~-------~~G~~~id~~~~~~g~~~~iEiN~R~~ 180 (184)
T PF13535_consen 138 EELRDLARKLLRALGY-------RNGFFHIDFIVDPDGELYFIEINPRFG 180 (184)
T ss_dssp HHHHHHHHHHHHHHT---------SEEEEEEEEEETCCEEEEEEEESS--
T ss_pred HHHHHHHHHHHHHcCC-------ceEEEEEEEEEeCCCCEEEEEECccCC
Confidence 4455555444444310 146789999999999999999999875
No 29
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=94.21 E-value=0.073 Score=52.87 Aligned_cols=51 Identities=20% Similarity=0.365 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCce--EEEEeccCCCCCcC
Q psy9339 119 ITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKP--WLIEVNASPSLTCT 178 (258)
Q Consensus 119 ~~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kp--wLLEVN~~P~l~~~ 178 (258)
.++.+++.++++..++.++. ...+-|+|+++++-.+| .+||||++|.|..-
T Consensus 475 vtd~~~~~~~~~A~~aa~~~---------gl~~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~h 527 (547)
T TIGR03103 475 VTEQLHPDLREAAERAARAL---------DIPVVGIDFLVPDVTGPDYVIIEANERPGLANH 527 (547)
T ss_pred cccccCHHHHHHHHHHHHHh---------CCCeEEEEEEeccCCCCCeEEEEecCCcccccc
Confidence 45678888888875555443 15679999999986777 89999999999744
No 30
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=93.41 E-value=0.33 Score=46.69 Aligned_cols=29 Identities=14% Similarity=0.058 Sum_probs=25.6
Q ss_pred cceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 148 CFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 148 ~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
+.-++.+|||++++++||+||+|..|.-.
T Consensus 270 ~~Gvl~~e~~it~~g~~~vlE~n~R~Gdp 298 (426)
T PRK13789 270 YRGLLYAGLMISPEGEPKVVEFNCRFGDP 298 (426)
T ss_pred ceEEEEEEEEEcCCCCEEEEEEecCCCCc
Confidence 45789999999999999999999999743
No 31
>PLN02257 phosphoribosylamine--glycine ligase
Probab=93.25 E-value=0.43 Score=46.07 Aligned_cols=32 Identities=16% Similarity=0.057 Sum_probs=26.6
Q ss_pred cceeecceEEEe-CCCceEEEEeccCCCCCcCC
Q psy9339 148 CFECYGYDIIID-NQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 148 ~FellG~DfllD-~~~kpwLLEVN~~P~l~~~~ 179 (258)
..-++.+|||++ +++.||+||+|+.|......
T Consensus 264 y~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdpe~~ 296 (434)
T PLN02257 264 FVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQ 296 (434)
T ss_pred cEEEEEEEEEEEcCCCCEEEEEEECCCCCCchh
Confidence 356788999999 78899999999999975333
No 32
>PRK06524 biotin carboxylase-like protein; Validated
Probab=92.58 E-value=0.33 Score=47.65 Aligned_cols=50 Identities=16% Similarity=0.028 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeC-CCceEEEEeccCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDN-QLKPWLIEVNASPSL 175 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~-~~kpwLLEVN~~P~l 175 (258)
+.+..++++++.++..+.. .-.|.-++++||++|. ++++|++|||..|+=
T Consensus 275 ~ei~eeIqeiA~ka~~aL~-----~lG~~Gv~rVDFfvd~ddgevYfnEINPR~~G 325 (493)
T PRK06524 275 PAQTRKAREMVRKLGDVLS-----REGYRGYFEVDLLHDLDADELYLGEVNPRLSG 325 (493)
T ss_pred HHHHHHHHHHHHHHHHHhh-----cCCCEEEEEEEEEEECCCCeEEEEEEeCCccc
Confidence 4556667776655444431 1246788999999995 689999999998875
No 33
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=92.50 E-value=0.61 Score=43.25 Aligned_cols=48 Identities=2% Similarity=0.027 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
..+.+++.+++.+.+.+. . ..-.+++||+++++++||++|||..|.=.
T Consensus 221 ~~~~~~~~~~a~~i~~~l----~----~~G~~~ve~~~~~dg~~~v~EinpR~~~s 268 (352)
T TIGR01161 221 DAIQARAEEIARRLMEEL----G----YVGVLAVEMFVLPDGRLLINELAPRVHNS 268 (352)
T ss_pred HHHHHHHHHHHHHHHHHc----C----ceeEEEEEEEEeCCCcEEEEEecCCCCCc
Confidence 344455555554444333 1 23578999999999999999999998743
No 34
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=92.21 E-value=0.53 Score=43.27 Aligned_cols=23 Identities=9% Similarity=-0.039 Sum_probs=16.9
Q ss_pred ccceeeeccccCccccCCceeeEEEEEE
Q psy9339 17 IIFKIVNIEEEDMTVVGGKKFDLRLYVL 44 (258)
Q Consensus 17 ~~~~IvQkYI~~PlLi~grKFDiR~yVL 44 (258)
.+.+++|+||+.+ .+ -|+|++|+
T Consensus 191 ~~~~~vQ~yI~~~---~~--~D~Rv~vv 213 (312)
T TIGR01380 191 REPVMAQRYLPEI---KE--GDKRILLI 213 (312)
T ss_pred CCcEEEEeccccc---cC--CCEEEEEE
Confidence 4689999999632 22 49999875
No 35
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=90.71 E-value=0.59 Score=44.71 Aligned_cols=47 Identities=13% Similarity=0.210 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
+.+..+|++.+.+++.+. . ..+ .+.+||++|++++||++|||..|+-
T Consensus 249 ~~~~~~i~~~a~~~~~~l----g-~~g---~~~ve~~~~~~g~~~viEiN~R~~~ 295 (450)
T PRK06111 249 EETRKAMGERAVQAAKAI----G-YTN---AGTIEFLVDEQKNFYFLEMNTRLQV 295 (450)
T ss_pred HHHHHHHHHHHHHHHHHc----C-CCC---ceeEEEEEcCCCCEEEEEEECCcCC
Confidence 345566666665555433 1 111 3568999999989999999998853
No 36
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=89.70 E-value=0.82 Score=43.99 Aligned_cols=47 Identities=13% Similarity=0.151 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
..+..+|++.+.+++.+.. +.-...+||++|.+++||+||||..|+.
T Consensus 249 ~~~~~~i~~~a~~~~~~lg--------~~G~~~vef~~~~~g~~~viEiNpR~~~ 295 (449)
T TIGR00514 249 PELRRKMGDAAVKAAVSIG--------YRGAGTVEFLLDKNGEFYFMEMNTRIQV 295 (449)
T ss_pred HHHHHHHHHHHHHHHHHCC--------CcceEEEEEEEeCCCCEEEEEEECCCCC
Confidence 4455666666655544432 2356778999998999999999998864
No 37
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=89.67 E-value=0.74 Score=41.61 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=30.9
Q ss_pred CCcceeecceEEEeCCCceEEEEeccCCCCCcCCccchhhhhhHHHH
Q psy9339 146 KHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILISPAEKL 192 (258)
Q Consensus 146 ~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~~~d~~~K~~~~~l 192 (258)
..|+-..|+|+++. ..||++|||..|...... +.+..+..+-.|
T Consensus 231 ~Gl~GYVGVDlVls--D~pYvIEINpR~TTp~vg-~sr~~~~sv~~L 274 (307)
T COG1821 231 PGLNGYVGVDLVLS--DEPYVIEINPRPTTPTVG-LSRVTPESVAEL 274 (307)
T ss_pred ccccceeeEEEEec--CCcEEEEecCCCCcceee-eeccccHHHHHH
Confidence 56788899999998 789999999988754222 334444444333
No 38
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=89.55 E-value=0.86 Score=45.66 Aligned_cols=48 Identities=15% Similarity=0.116 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 120 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 120 ~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
.+.+.+++++++.+++.+. .|.-.+.+||.+++++.+|++|||..|..
T Consensus 245 ~~~~~~~~~~~A~~~~~aL--------g~~Gv~~vEffv~~dG~v~v~EInpRpg~ 292 (577)
T PLN02948 245 PWKVAKLATDVAEKAVGSL--------EGAGVFGVELFLLKDGQILLNEVAPRPHN 292 (577)
T ss_pred CHHHHHHHHHHHHHHHHHh--------CCCeEEEEEEEEcCCCcEEEEEEeCCCCC
Confidence 3456667777765555443 25677899999999999999999999984
No 39
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=89.44 E-value=0.53 Score=48.48 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceE--------EEEeccCCCCC
Q psy9339 119 ITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPW--------LIEVNASPSLT 176 (258)
Q Consensus 119 ~~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpw--------LLEVN~~P~l~ 176 (258)
.++.+.+..++++.++.++.. -.+-|+|+++.+--+|| +||||++|.+.
T Consensus 659 vTd~ihp~~~~lA~~aa~alg---------l~i~GVDii~~di~~p~~~~~~~~~iiEvN~~P~l~ 715 (737)
T TIGR01435 659 MTDEMDDSYKQIAIRIATAVG---------AAICGVDLIIPDETIPDTDKHAIWGVIEANFNPAMH 715 (737)
T ss_pred cccccCHHHHHHHHHHHHhcC---------CCEEEEEEEecCCCCCccccccceEEEEEcCCcchh
Confidence 456778888888655554431 34789999998766655 89999999995
No 40
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=89.09 E-value=0.92 Score=42.27 Aligned_cols=47 Identities=13% Similarity=0.283 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
+...+++.+++.+++.+.. +.-.+++||+++++ .||++|||..|.-.
T Consensus 229 ~~~~~~i~~~a~~~~~~l~--------~~G~~~ie~~~~~~-~~~viEinpR~~~~ 275 (380)
T TIGR01142 229 EKALEEAQRIAKRITDALG--------GYGLFGVELFVKGD-EVIFSEVSPRPHDT 275 (380)
T ss_pred HHHHHHHHHHHHHHHHHcC--------CcceEEEEEEEECC-cEEEEEeecCCCCC
Confidence 4555666666655555542 24568999999876 79999999999854
No 41
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=88.91 E-value=1.2 Score=42.00 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=21.2
Q ss_pred ceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 149 FECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 149 FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
+-.+.+|||+++++ ||++|+|..|.=
T Consensus 227 ~Gvl~~e~~lt~~g-~~viEiN~R~G~ 252 (379)
T PRK13790 227 FGVLYIGAILTKDG-PKVIEFNARFGD 252 (379)
T ss_pred eeEEEEEEEEeCCC-eEEEEEEcccCC
Confidence 45677899998876 999999997743
No 42
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=88.36 E-value=1.1 Score=42.93 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
..+.++|.+.+.+++.+.. . --.+.+||++|.++++|++|||..|+-
T Consensus 249 ~~~~~~l~~~a~~~~~~lg-----~---~G~~~vEf~~~~~g~~~viEINpR~~~ 295 (451)
T PRK08591 249 EELRRKIGEAAVKAAKAIG-----Y---RGAGTIEFLYEKNGEFYFIEMNTRIQV 295 (451)
T ss_pred HHHHHHHHHHHHHHHHHcC-----C---CceEEEEEEEcCCCCEEEEEEECCCCc
Confidence 4455666666655554432 1 134668999998999999999998864
No 43
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=88.31 E-value=1.1 Score=41.99 Aligned_cols=47 Identities=6% Similarity=0.082 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
..+.+++++++.+.+.+. . +.-.+++||++++++++|++|+|..|.-
T Consensus 223 ~~~~~~~~~~a~~i~~~L----~----~~G~~~vEff~~~dg~~~v~EinpR~~~ 269 (372)
T PRK06019 223 AELQAQAEEIASRIAEEL----D----YVGVLAVEFFVTGDGELLVNEIAPRPHN 269 (372)
T ss_pred HHHHHHHHHHHHHHHHHc----C----ccceeEEEEEEcCCCeEEEEEecCCccC
Confidence 345555666654444432 1 2356899999999999999999999864
No 44
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=88.27 E-value=1.1 Score=42.22 Aligned_cols=51 Identities=8% Similarity=0.118 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASP 173 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P 173 (258)
+.+.+++.+.+-+.+.++...+.. ...--+.+|+++++++.+|++|||..+
T Consensus 262 esll~~v~~~~~~~v~a~~~~~~~--~~~Gp~~ie~~~~~d~~~~V~Eis~R~ 312 (358)
T PRK13278 262 ESLLPQVFEYGERFVETSKELVPP--GMIGPFCLESVVTDNLEIVVFEISARI 312 (358)
T ss_pred HhHHHHHHHHHHHHHHHHHHhcCc--cccCCceEEEEEcCCCCEEEEEEeCcc
Confidence 345555555555555665444421 233456778999999999999998877
No 45
>PRK05586 biotin carboxylase; Validated
Probab=88.21 E-value=1.2 Score=42.75 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
+.+.++|.+++.+++.+.. - . -...+||++|+++++|++|||..|+-.
T Consensus 249 ~~~~~~l~~~a~~i~~aLg----~-~---g~~~vEf~~~~~g~~~~iEvNpR~~~~ 296 (447)
T PRK05586 249 EELRKKMGEIAVKAAKAVN----Y-K---NAGTIEFLLDKDGNFYFMEMNTRIQVE 296 (447)
T ss_pred HHHHHHHHHHHHHHHHHcC----C-c---ceeEEEEEEcCCCCEEEEEEECCCCCC
Confidence 4455666666655554432 1 1 145699999999999999999988543
No 46
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=87.95 E-value=1.2 Score=41.62 Aligned_cols=46 Identities=9% Similarity=0.200 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
+...+++++++..++.+.. ..-.+.+||+++++ .||++|+|..|.-
T Consensus 242 ~~~~~~i~~~~~~~~~~L~--------~~G~~~ve~~~~~~-~~~viEinpR~~~ 287 (395)
T PRK09288 242 PAALEEAQEIAKKVTDALG--------GRGLFGVELFVKGD-EVYFSEVSPRPHD 287 (395)
T ss_pred HHHHHHHHHHHHHHHHHcC--------CeeEEEEEEEEeCC-eEEEEEecCCCCC
Confidence 4455566666655555442 35678899999887 8999999999874
No 47
>PRK12458 glutathione synthetase; Provisional
Probab=87.43 E-value=2.3 Score=39.65 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=16.4
Q ss_pred ceeecceEEEeCCCceEEEEecc-CCC
Q psy9339 149 FECYGYDIIIDNQLKPWLIEVNA-SPS 174 (258)
Q Consensus 149 FellG~DfllD~~~kpwLLEVN~-~P~ 174 (258)
....|+|++ .++|+|||. +|.
T Consensus 279 L~~~gVDli-----~~~l~EIN~~sp~ 300 (338)
T PRK12458 279 LFFVGLDIV-----GDKLVEVNVFSPG 300 (338)
T ss_pred CeEEeEEEE-----CCEEEEEeCCCcc
Confidence 356899998 347999998 884
No 48
>PRK06849 hypothetical protein; Provisional
Probab=87.36 E-value=0.69 Score=43.49 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.0
Q ss_pred eeecceEEEeCCCceEEEEeccCCC
Q psy9339 150 ECYGYDIIIDNQLKPWLIEVNASPS 174 (258)
Q Consensus 150 ellG~DfllD~~~kpwLLEVN~~P~ 174 (258)
-.+++||+.|+++++|+||||..+.
T Consensus 253 G~~~~df~~~~~g~~~~iEiNpR~~ 277 (389)
T PRK06849 253 GQISFDFIETENGDAYPIECNPRTT 277 (389)
T ss_pred eEEEEEEEECCCCCEEEEEecCCCC
Confidence 4677899999999999999998766
No 49
>PRK08462 biotin carboxylase; Validated
Probab=87.16 E-value=1.4 Score=42.34 Aligned_cols=47 Identities=13% Similarity=0.292 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
....++|.+.+.+++.+.. - . -...+||++|+++.||+||||..|+-
T Consensus 251 ~~~~~~i~~~a~~~~~alg----~-~---G~~~ve~~~~~~g~~~viEiNpR~~~ 297 (445)
T PRK08462 251 EKTRERLHETAIKAAKAIG----Y-E---GAGTFEFLLDSNLDFYFMEMNTRLQV 297 (445)
T ss_pred HHHHHHHHHHHHHHHHHcC----C-C---CcceEEEEEeCCCCEEEEEEECCcCc
Confidence 3455666666655554432 1 1 11236999998889999999999865
No 50
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=87.13 E-value=1.6 Score=42.51 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
+.+..+|++.+.+++.+.. ..+ ...+||++|.++++|++|||..+.-.
T Consensus 248 ~~~~~~i~~~a~~~~~aLg-----~~g---~~~vEf~~d~~g~~y~iEiNpRl~~~ 295 (472)
T PRK07178 248 PEQRAYIGDLAVRAAKAVG-----YEN---AGTVEFLLDADGEVYFMEMNTRVQVE 295 (472)
T ss_pred HHHHHHHHHHHHHHHHHcC-----CCc---eeEEEEEEeCCCCEEEEEEeCCcCCC
Confidence 4566667777655555542 111 34689999999999999999988553
No 51
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=87.02 E-value=0.59 Score=43.65 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=24.1
Q ss_pred cceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 148 CFECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 148 ~FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
+=-++++++-.|.+++|+|||||..|+=
T Consensus 256 l~g~~NiQ~r~d~~g~p~LLEINpR~sG 283 (329)
T PF15632_consen 256 LDGLFNIQFRYDEDGNPKLLEINPRPSG 283 (329)
T ss_pred CCceEEEEEEEcCCCCEEEEEeCCCCcc
Confidence 3456888999999999999999998874
No 52
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=86.92 E-value=1.5 Score=42.64 Aligned_cols=48 Identities=15% Similarity=0.238 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
+.+..+|++.+.+++.+.. ..+ ...+||++|.++++|++|||..++-.
T Consensus 249 ~~~~~~i~~~a~~~~~alg-----~~g---~~~vEf~~~~~~~~y~iEiN~R~~~~ 296 (478)
T PRK08463 249 DNLRKTMGVTAVAAAKAVG-----YTN---AGTIEFLLDDYNRFYFMEMNTRIQVE 296 (478)
T ss_pred HHHHHHHHHHHHHHHHHcC-----CCC---ceeEEEEEcCCCCEEEEEEECCcCCC
Confidence 4566677777655555542 122 24679999998999999999987654
No 53
>PRK07206 hypothetical protein; Provisional
Probab=84.84 E-value=1.9 Score=40.66 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 123 LFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 123 i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
..++|.+.+.+++.+.. -. +-.+.+||++++++ |||||||..|+=
T Consensus 246 ~~~~i~~~~~~~~~alg----~~---~G~~h~E~~~~~~g-~~liEin~R~~G 290 (416)
T PRK07206 246 EYQELVDYTKQALDALG----IK---NGPAHAEVMLTADG-PRLIEIGARLDG 290 (416)
T ss_pred HHHHHHHHHHHHHHHcC----Cc---cCCceEEEEEcCCC-CEEEEECCccCC
Confidence 45566666655555542 11 23367889998876 999999999874
No 54
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=84.70 E-value=6.2 Score=37.42 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCCccchhhhhhHHHHHHHHHHHHH
Q psy9339 122 KLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILISPAEKLLATADDLYK 201 (258)
Q Consensus 122 ~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~~~d~~~K~~~~~ll~~~~~~~~ 201 (258)
.+.+++.+++.+.+.++...+.+ ..---|.+|+++|+++++|++||| |-+...+++..........+
T Consensus 270 slle~v~e~ger~v~a~~~~~~p--g~iGpf~lQ~iv~~d~~~~V~EIn--pR~gGGtnl~~~aGs~y~~l--------- 336 (366)
T PRK13277 270 SLLEKVFEIGEKFVEATKELYPP--GIIGPFTLQTIVTPDLDFVVYDVA--PRIGGGTNVYMGVGSPYSKL--------- 336 (366)
T ss_pred HHHHHHHHHHHHHHHHhhhhcCc--ccccceEEEEEEcCCCcEEEEEEc--CCcCCCccceeecCCCcHHH---------
Confidence 45566666665566665543321 222346677889999999999995 45544444332222222211
Q ss_pred hhhhhhccCCCCCCcchHHHHHHHHH
Q psy9339 202 NLEETVFKLNAELGPKVQEQLAEVVK 227 (258)
Q Consensus 202 ~~~~~~f~~~~~~~~k~~~~l~~~~~ 227 (258)
.+..|-+.+.++-.|+.+.++
T Consensus 337 -----~~~~~ms~GrRIa~Eik~a~~ 357 (366)
T PRK13277 337 -----YFGKPMSTGRRIAMEIKRAIE 357 (366)
T ss_pred -----HhcCccccCCcchHHHHHHHH
Confidence 234344555666566666653
No 55
>PLN02735 carbamoyl-phosphate synthase
Probab=84.64 E-value=2 Score=46.27 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPS 174 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~ 174 (258)
+.+.++|++++.+...+. ++.-++.+||++|.++++|+||||..|+
T Consensus 832 ~e~~~~i~~~a~ki~~~L--------~~~G~~~vqf~v~~dg~~yviEiNpR~s 877 (1102)
T PLN02735 832 SSCLATIRDWTTKLAKRL--------NVCGLMNCQYAITPSGEVYIIEANPRAS 877 (1102)
T ss_pred HHHHHHHHHHHHHHHHHc--------CCcceeeEEEEEcCCCcEEEEEEeCCCC
Confidence 455566666554432222 2346678899999999999999999997
No 56
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=84.61 E-value=2.7 Score=39.91 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=22.6
Q ss_pred ceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 149 FECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 149 FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
.-.+.+||++++++ ||++|||..|.-
T Consensus 267 ~G~~~ie~~~t~~g-~~viEin~R~g~ 292 (423)
T TIGR00877 267 KGVLYAGLMLTKEG-PKVLEFNCRFGD 292 (423)
T ss_pred EeEEEEEEEEECCC-cEEEEEEccCCC
Confidence 45688999999887 999999999963
No 57
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=84.26 E-value=2.3 Score=41.28 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEe-CCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIID-NQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD-~~~kpwLLEVN~~P~l~ 176 (258)
..+.++|.+.+.+++.+.. . --...+||++| +++.+|+||||..|.-.
T Consensus 251 ~~~~~~l~~~a~~~~~alg-----~---~G~~~vEf~~~~~~g~~~~iEvNpR~~~~ 299 (467)
T PRK12833 251 PAQRDALCASAVRLARQVG-----Y---RGAGTLEYLFDDARGEFYFIEMNTRIQVE 299 (467)
T ss_pred HHHHHHHHHHHHHHHHHcC-----C---cCcceEEEEEecCCCCEEEEEEECCCCcc
Confidence 3455666666655554431 1 13366899998 47899999999988643
No 58
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=83.79 E-value=3.2 Score=40.06 Aligned_cols=50 Identities=8% Similarity=-0.019 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPS 174 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~ 174 (258)
+.+..++++++..++.+... . .....-++.++||+.+++ ||+||+|..+.
T Consensus 245 ~~~~~~i~~i~~~~~~~l~~--~-~~~~~G~l~~~~~lt~~g-p~ViE~n~R~g 294 (435)
T PRK06395 245 KDAPERAKHILNDIIRAMKD--E-NNPFKGIMYGQFMDTPNG-VKVIEINARFA 294 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHh--c-CCceEEEEEEEEEEeCCC-cEEEEEeCCCC
Confidence 45666666666555555432 1 122345678999997555 99999999876
No 59
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=83.70 E-value=1.5 Score=39.93 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=21.3
Q ss_pred ceeecceEEEeCCCceEEEEeccCCC
Q psy9339 149 FECYGYDIIIDNQLKPWLIEVNASPS 174 (258)
Q Consensus 149 FellG~DfllD~~~kpwLLEVN~~P~ 174 (258)
.-.+++||++|+ +++|+||+|..+.
T Consensus 247 ~G~~~vd~~~~~-g~~~viEiNpR~~ 271 (326)
T PRK12767 247 RGPLNIQCFVTD-GEPYLFEINPRFG 271 (326)
T ss_pred eeeEEEEEEEEC-CeEEEEEEeCCCC
Confidence 466889999997 8999999997654
No 60
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=83.44 E-value=3 Score=36.10 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=21.7
Q ss_pred CCcceeecceEEEeCCCceEEEEeccCCC
Q psy9339 146 KHCFECYGYDIIIDNQLKPWLIEVNASPS 174 (258)
Q Consensus 146 ~~~FellG~DfllD~~~kpwLLEVN~~P~ 174 (258)
-...-++.+.+|+.+++ |++||.|....
T Consensus 163 ~~y~GvLy~glMlt~~G-p~vlEfN~RfG 190 (194)
T PF01071_consen 163 IPYRGVLYAGLMLTEDG-PKVLEFNVRFG 190 (194)
T ss_dssp ---EEEEEEEEEEETTE-EEEEEEESSGS
T ss_pred CCcceeeeeeeEEeCCC-cEEEEEeCCCC
Confidence 34467899999999888 99999998653
No 61
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=83.01 E-value=2.7 Score=45.48 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
..+.++|.+.+.+.+.+.. . --...+||++|+++++|+||||..|+-.
T Consensus 249 ~e~r~~I~~~A~kla~aLg------y--~G~gtVEFlvd~dg~~yfIEVNPRiqve 296 (1143)
T TIGR01235 249 REVRDEIAEYAVKLAKAVN------Y--INAGTVEFLVDNDGKFYFIEVNPRIQVE 296 (1143)
T ss_pred HHHHHHHHHHHHHHHHHcC------C--cceEEEEEEEeCCCcEEEEEeecCCCcc
Confidence 4455666666655444431 1 1246799999999999999999999753
No 62
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=81.10 E-value=4 Score=38.78 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=21.2
Q ss_pred eeecceEEEeCCCceEEEEeccCCCC
Q psy9339 150 ECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 150 ellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
-.+.+||++++++ |||+|+|..|.-
T Consensus 266 G~~~ve~~~t~~g-~~viEin~R~g~ 290 (420)
T PRK00885 266 GVLYAGLMITKDG-PKVIEFNARFGD 290 (420)
T ss_pred eEEEEEEEEECCC-cEEEEEecccCC
Confidence 5578999999876 899999998863
No 63
>PRK14016 cyanophycin synthetase; Provisional
Probab=79.96 E-value=2.7 Score=43.25 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCC------ceEEEEeccCCCCCcC
Q psy9339 120 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQL------KPWLIEVNASPSLTCT 178 (258)
Q Consensus 120 ~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~------kpwLLEVN~~P~l~~~ 178 (258)
.+.+-++..+++.++.++ + ...+.|+|++.++-- ...++|||.+|.+...
T Consensus 397 td~i~~~~~~~a~~aa~~----~-----gl~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~~ 452 (727)
T PRK14016 397 TDEVHPENAAIAERAAKI----I-----GLDIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLRMH 452 (727)
T ss_pred ccccCHHHHHHHHHHHHh----c-----CCCEEEEEEEecCcccccccCCcEEEEEcCCcchhhc
Confidence 345666666665333322 2 278899999998632 3479999999999753
No 64
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=79.74 E-value=1.8 Score=45.38 Aligned_cols=48 Identities=27% Similarity=0.477 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceE------EEEeccCCCCC
Q psy9339 120 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPW------LIEVNASPSLT 176 (258)
Q Consensus 120 ~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpw------LLEVN~~P~l~ 176 (258)
++.+-++..+++..+.++ + ...+-|+|++..+--+|| +||||++|++.
T Consensus 396 td~i~~~~~~~a~~aa~~----~-----gl~i~gvD~i~~di~~~~~~~~~~iiEvN~~p~~~ 449 (864)
T TIGR02068 396 TDEIHPENAATAVRAAKI----I-----GLDIAGVDIVTEDISRPLRDTDGAIVEVNAAPGLR 449 (864)
T ss_pred ccccCHHHHHHHHHHHHH----h-----CCCeEEEEEEecCCCCCccccCcEEEEEcCCcchh
Confidence 456667666665333322 2 257789999998776676 99999999995
No 65
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=79.15 E-value=1.8 Score=44.75 Aligned_cols=49 Identities=24% Similarity=0.424 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCce--------EEEEeccCCCCC
Q psy9339 119 ITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKP--------WLIEVNASPSLT 176 (258)
Q Consensus 119 ~~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kp--------wLLEVN~~P~l~ 176 (258)
.++.+-+..++++.++.++.. ..+.|+|+++++--+| -+||||++|++.
T Consensus 673 vtd~ih~~~~~lA~~aa~~ig---------l~~~GvDii~~di~~p~~~~~~~~~IiEvN~~P~l~ 729 (752)
T PRK02471 673 MTDDMDDSYKQIAVKAAKALG---------AKICGVDLIIPDLTQPASPEHPNYGIIELNFNPAMY 729 (752)
T ss_pred cccccCHHHHHHHHHHHHhcC---------CCEEEEEEEeCCCcccccccCCCeEEEEecCCCchh
Confidence 455677777777655444431 5679999999874443 579999999995
No 66
>KOG2158|consensus
Probab=79.04 E-value=0.51 Score=45.76 Aligned_cols=41 Identities=39% Similarity=0.829 Sum_probs=34.9
Q ss_pred CCCcceeecceEEEeCCCceEEEEeccCCCCCcCCccchhhh
Q psy9339 145 DKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILI 186 (258)
Q Consensus 145 ~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~~~d~~~K 186 (258)
..-||+.+|+|.+. ...+||++|+|..|++..+...+.-.+
T Consensus 11 ~~v~~~~~~~~~~~-~~~~~w~~~~~~~p~~~~~~~~~~~~~ 51 (565)
T KOG2158|consen 11 ESVCFEVLGFDILL-RKLKPWLLEINRAPSFGTDQKIDYDVK 51 (565)
T ss_pred eeeehHhhhhhhhh-hhcccccchhhcCCCCCCCcCcchhhh
Confidence 35699999999999 999999999999999988876554443
No 67
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=78.98 E-value=1.8 Score=40.45 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=19.6
Q ss_pred cceeecceEEEeCCCceEEEEeccC
Q psy9339 148 CFECYGYDIIIDNQLKPWLIEVNAS 172 (258)
Q Consensus 148 ~FellG~DfllD~~~kpwLLEVN~~ 172 (258)
...++|+|+..|.+|++|+||.|++
T Consensus 67 ~~~~~g~Dl~r~~dG~w~VleDn~~ 91 (330)
T PF04174_consen 67 RLHFYGADLVRDPDGRWRVLEDNTR 91 (330)
T ss_dssp S-SEEEEEEEE-SSS-EEEEEEE-S
T ss_pred EEEEEEEeeeECCCCCEEEEEecCC
Confidence 4579999999999999999999996
No 68
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=77.82 E-value=3 Score=38.60 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=24.4
Q ss_pred ceeecceEEEeCC--CceEEEEeccCCCCCcCC
Q psy9339 149 FECYGYDIIIDNQ--LKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 149 FellG~DfllD~~--~kpwLLEVN~~P~l~~~~ 179 (258)
..+||||+++|.. ++.++|.||.-|++..-.
T Consensus 263 L~LFgfDvI~~~~t~~~~~VIDINyFPgY~~vp 295 (307)
T PF05770_consen 263 LTLFGFDVIRENGTGGRYYVIDINYFPGYKKVP 295 (307)
T ss_dssp -SEEEEEEEEGCCT-SSEEEEEEEES--TTTSC
T ss_pred cceeeeEEEEEcCCCCcEEEEEeccCCCccCCC
Confidence 6899999999965 489999999999997654
No 69
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=76.16 E-value=19 Score=33.20 Aligned_cols=24 Identities=33% Similarity=0.674 Sum_probs=20.5
Q ss_pred ceeecceEEEeCC-CceEEEEeccC
Q psy9339 149 FECYGYDIIIDNQ-LKPWLIEVNAS 172 (258)
Q Consensus 149 FellG~DfllD~~-~kpwLLEVN~~ 172 (258)
.+-|-+|+-++.+ .++||||+|.-
T Consensus 214 ~~~~v~DVyi~~~~~~v~LID~NPf 238 (299)
T PF07065_consen 214 LDNYVFDVYITRDKDKVWLIDFNPF 238 (299)
T ss_pred CCCEEEEEEEcCCCCeEEEEEecCC
Confidence 3448899999999 99999999973
No 70
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=75.88 E-value=7.7 Score=38.19 Aligned_cols=47 Identities=11% Similarity=0.155 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
..+.++|.+++.+++++.. ..+ ...+||++| ++++|++|||..++..
T Consensus 249 ~~~~~~l~~~A~~l~~alg-----y~g---~gtVEfl~~-~g~~yflEiNpRlqve 295 (499)
T PRK08654 249 PELRERMGEAAVKAAKAIN-----YEN---AGTVEFLYS-NGNFYFLEMNTRLQVE 295 (499)
T ss_pred HHHHHHHHHHHHHHHHHcC-----CCC---ceEEEEEEE-CCcEEEEEEECCCCCC
Confidence 4556667776655555442 112 234788886 5799999999998754
No 71
>PLN02735 carbamoyl-phosphate synthase
Probab=75.78 E-value=6 Score=42.78 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEe-CCCceEEEEeccCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIID-NQLKPWLIEVNASPS 174 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD-~~~kpwLLEVN~~P~ 174 (258)
+..+++|++.+.+++.+.. -. .-...+||++| +++++|+||||..++
T Consensus 275 ~~~~q~l~~~A~ki~~aLg----i~---~G~~nVqf~l~~~~g~~~ViEVNPR~s 322 (1102)
T PLN02735 275 DKEYQRLRDYSVAIIREIG----VE---CGGSNVQFAVNPVDGEVMIIEMNPRVS 322 (1102)
T ss_pred HHHHHHHHHHHHHHHHHhC----CC---cCceEEEEEEECCCCcEEEEEecCCCC
Confidence 4566677777655555542 10 13367899999 589999999996665
No 72
>PRK12999 pyruvate carboxylase; Reviewed
Probab=75.03 E-value=7.3 Score=42.32 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
..+.++|.+.+.+.+.+.. ..+ ...+||++|.++++|+||||..++..
T Consensus 253 ~~~~~~l~~~A~kl~~alg-----y~G---~gtVEflvd~dg~~yfIEINpRlqve 300 (1146)
T PRK12999 253 EELRERICEAAVKLARAVG-----YVN---AGTVEFLVDADGNFYFIEVNPRIQVE 300 (1146)
T ss_pred HHHHHHHHHHHHHHHHHcC-----CCc---eEEEEEEEECCCCEEEEEEECCCCCc
Confidence 4456666666655555442 112 34689999999999999999888653
No 73
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=73.14 E-value=8.6 Score=37.78 Aligned_cols=51 Identities=6% Similarity=0.064 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEe-CCCceEEEEeccCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIID-NQLKPWLIEVNASPS 174 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD-~~~kpwLLEVN~~P~ 174 (258)
+..+.++.+++..++.+...... ....-.+-.+||++ +++ |||||+|..+.
T Consensus 260 ~~~~~~~~~~v~~~l~al~~~~g--~~~~G~l~~elmlt~~~G-P~vIE~n~R~G 311 (486)
T PRK05784 260 EEEYEEAVEIVKRTIDAIYKETG--ERYVGVISGQMMLTELWG-PTVIEYYSRFG 311 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CCcEEEEEEEEEEecCCC-cEEEEEecccC
Confidence 34445555566555555543211 11124566789998 554 99999998776
No 74
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=70.49 E-value=9.5 Score=41.05 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPS 174 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~ 174 (258)
+...++|++++.+.+.+. . +.-.+.+||+++ +++||+||||..|+
T Consensus 798 ~~~~~~i~~~a~~i~~aL----g----~~G~~~vqf~~~-~~~~yViEiNpR~s 842 (1066)
T PRK05294 798 EEIIEEIREYTKKLALEL----N----VVGLMNVQFAVK-DDEVYVIEVNPRAS 842 (1066)
T ss_pred HHHHHHHHHHHHHHHHHc----C----CeeeEEEEEEEE-CCeEEEEEEecCCC
Confidence 445566666654444433 1 234688999998 56899999999886
No 75
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=66.41 E-value=12 Score=40.14 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPS 174 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~ 174 (258)
....++|++++.+.+++. . +--.+.+||++|+ +.||+||||..++
T Consensus 798 ~~~~~~i~~~a~ki~~aL----g----i~G~~~vqf~~~~-~~~yvIEvNpR~s 842 (1050)
T TIGR01369 798 AEIVDRIKDIVRKIAKEL----N----VKGLMNIQFAVKD-GEVYVIEVNPRAS 842 (1050)
T ss_pred HHHHHHHHHHHHHHHHHC----C----CcceEEEEEEEEC-CeEEEEEEeCCCC
Confidence 345556666554444433 1 1235778999985 7899999999986
No 76
>PRK02186 argininosuccinate lyase; Provisional
Probab=65.84 E-value=14 Score=38.98 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCC
Q psy9339 122 KLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPS 174 (258)
Q Consensus 122 ~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~ 174 (258)
....++.+.+.+++.+.. -. +-.+.+||+++++ .||+||||..|.
T Consensus 234 ~~~~~l~~~~~~~l~aLG----~~---~G~~hvE~~~t~~-g~~liEIn~R~~ 278 (887)
T PRK02186 234 PQRERIVRTVLRALDAVG----YA---FGPAHTELRVRGD-TVVIIEINPRLA 278 (887)
T ss_pred HHHHHHHHHHHHHHHHcC----CC---cCceEEEEEEECC-CEEEEEECCCCC
Confidence 345556666655555531 11 3457789999865 599999998765
No 77
>KOG2157|consensus
Probab=65.49 E-value=4.3 Score=39.99 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=45.0
Q ss_pred hhhccccccceeeeccccCccccCCceeeEEEEEEEeeccCcEEEEEcceEEeecccCCCC
Q psy9339 10 IGSEAAKIIFKIVNIEEEDMTVVGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDK 70 (258)
Q Consensus 10 ~~~~~~~~~~~IvQkYI~~PlLi~grKFDiR~yVLvts~~Pl~vyly~~g~vR~a~~~y~~ 70 (258)
|+.+.++.|.||++.+..+++++.-|++.+|+++.-.+ | .+.+++ -++.++...+.+
T Consensus 255 i~~~KfDlR~~vlvt~~~pl~~y~yreg~lRf~t~~y~--~-~~nl~n-~~~HLtN~siqK 311 (497)
T KOG2157|consen 255 IGGHKFDLRQYVLVTHFDPLLLYRYREGFLRFSTEPYG--P-LVNLQN-MSVHLTNVSIQK 311 (497)
T ss_pred cCCceeeeeEEEEeecccchhheeeccceEEEEeccCc--c-hhhhcc-cchhhhcccccc
Confidence 45667899999999999877778899999999988766 5 677776 667776665543
No 78
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=64.49 E-value=8.3 Score=34.33 Aligned_cols=77 Identities=25% Similarity=0.297 Sum_probs=50.7
Q ss_pred ecceEEEeCCC-ceEEEEecc------CCCCCcCCccchhhhhhHHHHHHHHHHHHH------hh--hhhhccCCCCCCc
Q psy9339 152 YGYDIIIDNQL-KPWLIEVNA------SPSLTCTTVNDRILISPAEKLLATADDLYK------NL--EETVFKLNAELGP 216 (258)
Q Consensus 152 lG~DfllD~~~-kpwLLEVN~------~P~l~~~~~~d~~~K~~~~~ll~~~~~~~~------~~--~~~~f~~~~~~~~ 216 (258)
=.+||+++++. .+|.+||.. .+.+.+++|+.|-.|.. +.|.+.+..-++ .. --..|.++..++|
T Consensus 114 SRiDfll~~~~~~~~~vEVK~vtL~~~~~a~FPDApT~RG~KHL-reL~~~~~~G~ra~vlf~v~r~d~~~F~P~~e~Dp 192 (235)
T COG1489 114 SRIDFLLDDDERPDCYVEVKSVTLVENGVAMFPDAPTARGQKHL-RELERLAKEGYRAVVLFLVLRSDITRFSPNREIDP 192 (235)
T ss_pred eeEEEEEcCCCCCceEEEEeeEEEeeCCEEECCCCcchhhHHHH-HHHHHHHHcCCceEEEEEEecCCCcEECcccccCH
Confidence 34899999877 899999976 45566777776665552 233333332111 11 1236999999999
Q ss_pred chHHHHHHHHHHh
Q psy9339 217 KVQEQLAEVVKKA 229 (258)
Q Consensus 217 k~~~~l~~~~~~~ 229 (258)
++-+.+.+.++..
T Consensus 193 ~fa~~l~~A~~~G 205 (235)
T COG1489 193 KFAELLREAIKAG 205 (235)
T ss_pred HHHHHHHHHHHcC
Confidence 9988888776543
No 79
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=63.31 E-value=5.7 Score=37.27 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=19.5
Q ss_pred ecceEEEeCCCceEEEEeccCCCCC
Q psy9339 152 YGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 152 lG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
=|+||++.+++ |++||||..+.=.
T Consensus 254 nGVDfvl~d~g-pyViEVNPR~qGt 277 (389)
T COG2232 254 NGVDFVLNDKG-PYVIEVNPRIQGT 277 (389)
T ss_pred cccceEeecCC-cEEEEecCcccch
Confidence 58999997765 9999999877543
No 80
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=60.24 E-value=29 Score=30.09 Aligned_cols=47 Identities=9% Similarity=0.064 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeC-CCceEEEEeccCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDN-QLKPWLIEVNASPSL 175 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~-~~kpwLLEVN~~P~l 175 (258)
+..+.+|++...+...+.. .--...+-|++|. +++.|+||||...+-
T Consensus 135 ~~~~~~l~~~a~~ia~~l~--------~~G~~tvef~~~~~~~~~y~lEvNpR~~~ 182 (211)
T PF02786_consen 135 DEERQKLREAAKKIARALG--------YVGAGTVEFAVDPDDGEFYFLEVNPRLQR 182 (211)
T ss_dssp HHHHHHHHHHHHHHHHHTT---------EEEEEEEEEEETTTTEEEEEEEESS--T
T ss_pred hHHHHHHHHHHHHHHHhhC--------eeecceEEEEEccCccceeeecccCCCCC
Confidence 4566666666544333321 1234567788997 999999999986554
No 81
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=57.72 E-value=23 Score=38.20 Aligned_cols=47 Identities=11% Similarity=0.107 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEe-CCCceEEEEeccCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIID-NQLKPWLIEVNASPS 174 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD-~~~kpwLLEVN~~P~ 174 (258)
+...+++++++.+.+.+.. - .+-.+.+||.+| .++++|++|||..|+
T Consensus 258 ~~~~~~l~~~a~ki~~aLg----~---~~G~~~vef~~~~~~g~~~viEiNPR~~ 305 (1066)
T PRK05294 258 DKEYQMLRDASIAIIREIG----V---ETGGCNVQFALNPKDGRYIVIEMNPRVS 305 (1066)
T ss_pred HHHHHHHHHHHHHHHHHcC----C---ccCceEEEEEEECCCCcEEEEEeecCCC
Confidence 3455566666544444431 1 124477899999 578999999996665
No 82
>PF03749 SfsA: Sugar fermentation stimulation protein; InterPro: IPR005224 The sugar fermentation stimulation protein is a probable regulatory factor involved in maltose metabolism. It contains a putative DNA-binding domain, and was isolated as a gene which enabled Escherichia coli W3110 (strain MK2001) to use maltose [].
Probab=55.29 E-value=16 Score=32.03 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=49.2
Q ss_pred ecceEEEeCCCceEEEEeccC------CCCCcCCccchhhhhhHHHHHHHHHHHHH------hhh--hhhccCCCCCCcc
Q psy9339 152 YGYDIIIDNQLKPWLIEVNAS------PSLTCTTVNDRILISPAEKLLATADDLYK------NLE--ETVFKLNAELGPK 217 (258)
Q Consensus 152 lG~DfllD~~~kpwLLEVN~~------P~l~~~~~~d~~~K~~~~~ll~~~~~~~~------~~~--~~~f~~~~~~~~k 217 (258)
-.+||++++++.++++||-+- =++.++.++.|-.|.. +.|...+..-++ ... -..|.++...+|.
T Consensus 104 sR~Dfll~~~~~~~~vEVKsvtL~~~~~a~FPDApT~RG~kHL-~eL~~l~~~G~ra~vlFvvqr~d~~~f~p~~~~Dp~ 182 (215)
T PF03749_consen 104 SRFDFLLEDNGGKCYVEVKSVTLVEDGIAMFPDAPTERGRKHL-RELAELAEEGYRAAVLFVVQRPDAERFRPNREIDPE 182 (215)
T ss_pred ccEEEEEEcCCCCEEEEEeeeEeccCCcccCCCccchHHHHHH-HHHHHHHhccCcEEEEEEEECCCCCEEeEChhcCHH
Confidence 449999999988999999763 2344566777766653 223222222111 111 1368888788899
Q ss_pred hHHHHHHHHHHh
Q psy9339 218 VQEQLAEVVKKA 229 (258)
Q Consensus 218 ~~~~l~~~~~~~ 229 (258)
+-+.|.++.+.+
T Consensus 183 fa~~l~~A~~~G 194 (215)
T PF03749_consen 183 FAEALREAAEAG 194 (215)
T ss_pred HHHHHHHHHHCC
Confidence 988888887654
No 83
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=55.21 E-value=22 Score=28.54 Aligned_cols=26 Identities=23% Similarity=0.126 Sum_probs=21.8
Q ss_pred eeecceEEEeCCCceEEEEeccCCCC
Q psy9339 150 ECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 150 ellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
.-+.+||.+.++|...|+|+|..=+.
T Consensus 93 ~~~vlDvg~~~~G~~~lVE~N~~~~s 118 (130)
T PF14243_consen 93 PAYVLDVGVTDDGGWALVEANDGWSS 118 (130)
T ss_pred CeEEEEEEEeCCCCEEEEEecCcccc
Confidence 34888999999999999999985444
No 84
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=54.71 E-value=28 Score=37.63 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 122 KLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 122 ~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
...++|++.+.+.+.+. .- --++.+||++++ +.+|+||||..|+-
T Consensus 797 ~~~~~i~~~a~ki~~~L----~~----~G~~niqf~v~~-~~~yviEiNpR~s~ 841 (1068)
T PRK12815 797 EQQEKIRDYAIKIAKKL----GF----RGIMNIQFVLAN-DEIYVLEVNPRASR 841 (1068)
T ss_pred HHHHHHHHHHHHHHHHc----CC----ccEEEEEEEEEC-CcEEEEEEeCCCCc
Confidence 34555665554443332 11 246789999986 58999999998863
No 85
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=54.59 E-value=27 Score=37.75 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCC-CceEEEEeccCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQ-LKPWLIEVNASPS 174 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~-~kpwLLEVN~~P~ 174 (258)
+..++++++++.+.+.+.. +.-.+.+||++|.+ +++|++|||..++
T Consensus 258 ~~~~~~l~~~a~ki~~~Lg--------~~G~~~vef~l~~~~g~~~ViEINPR~~ 304 (1068)
T PRK12815 258 DDEYQMLRSASLKIISALG--------VVGGCNIQFALDPKSKQYYLIEVNPRVS 304 (1068)
T ss_pred HHHHHHHHHHHHHHHHHcC--------CCCceEEEEEEECCCCcEEEEEEecCcc
Confidence 3455566666544444431 13456789999975 7899999996654
No 86
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=52.88 E-value=31 Score=37.17 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeC-CCceEEEEeccCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDN-QLKPWLIEVNASPSL 175 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~-~~kpwLLEVN~~P~l 175 (258)
+..++++++++.+.+.+. .- --.+.+||.+|. ++++|++|||..|+-
T Consensus 257 ~~~~~~l~~~a~~i~~~L----g~----~G~~~Vef~l~~~~g~~~viEiNPR~~~ 304 (1050)
T TIGR01369 257 DKEYQMLRDASIKIIREL----GI----EGGCNVQFALNPDSGRYYVIEVNPRVSR 304 (1050)
T ss_pred HHHHHHHHHHHHHHHHHc----CC----cceeEEEEEEECCCCcEEEEEeecCcCc
Confidence 345556666654444443 21 122778999996 589999999987764
No 87
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=50.79 E-value=18 Score=35.17 Aligned_cols=50 Identities=22% Similarity=0.172 Sum_probs=39.3
Q ss_pred ccccceeeecccc---CccccCC----ceeeEEEEEEEeeccCcEEEEEcceEEeecccC
Q psy9339 15 AKIIFKIVNIEEE---DMTVVGG----KKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVK 67 (258)
Q Consensus 15 ~~~~~~IvQkYI~---~PlLi~g----rKFDiR~yVLvts~~Pl~vyly~~g~vR~a~~~ 67 (258)
.+-..||.|.-++ -|..++| |..|+|.|++.+. -.+++.-+|+.|++...
T Consensus 401 a~p~~~IaQ~~~~lST~Pt~v~~~l~pr~vdlR~f~~~~~---~~~~v~pGGLtRVal~~ 457 (488)
T COG2308 401 ADPENYIAQPVLQLSTVPTFVDGGLAPRHVDLRPFALADR---DGVQVMPGGLTRVALRE 457 (488)
T ss_pred hChhhhcccccccccccceEECCeeccccccceeEEEEcC---CceEEcccceeeeeecC
Confidence 4456788887665 5666654 7999999999985 45889999999999773
No 88
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=50.65 E-value=12 Score=34.25 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.0
Q ss_pred ecceEEEeCCCceEEEEeccCCC
Q psy9339 152 YGYDIIIDNQLKPWLIEVNASPS 174 (258)
Q Consensus 152 lG~DfllD~~~kpwLLEVN~~P~ 174 (258)
=.|||++..+.+.|+||||.--+
T Consensus 196 KrFDFvi~~~~k~y~IE~NFY~~ 218 (286)
T PF04556_consen 196 KRFDFVIKTNKKIYLIETNFYGS 218 (286)
T ss_pred eEEEEEEEcCCEEEEEEEeeecC
Confidence 45899999999999999998554
No 89
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=50.18 E-value=23 Score=38.85 Aligned_cols=47 Identities=13% Similarity=0.055 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeC-CCceEEEEeccCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDN-QLKPWLIEVNASPSL 175 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~-~~kpwLLEVN~~P~l 175 (258)
..+.++|.+.+.....+.. +.-...+||++|. ++.||+||||..++-
T Consensus 247 ~~~~~~l~~~a~~l~~aLg--------y~G~~~VEfild~~~g~~y~lEVNpRlq~ 294 (1201)
T TIGR02712 247 PETRQALLAAAERLGEAVN--------YRSAGTVEFIYDEARDEFYFLEVNTRLQV 294 (1201)
T ss_pred HHHHHHHHHHHHHHHHhcC--------ccceEEEEEEEECCCCCEEEEEEECCcCc
Confidence 3455556666544444331 1134678999996 588999999999864
No 90
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=49.78 E-value=18 Score=31.52 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=20.3
Q ss_pred cceeecceEEEeCCCceEEEEeccC
Q psy9339 148 CFECYGYDIIIDNQLKPWLIEVNAS 172 (258)
Q Consensus 148 ~FellG~DfllD~~~kpwLLEVN~~ 172 (258)
..++.|+|.+...+|+-+++|||.+
T Consensus 153 GlDI~~v~ai~~kdGke~Iievnds 177 (203)
T PF02750_consen 153 GLDICAVDAIHGKDGKEYIIEVNDS 177 (203)
T ss_dssp --SEEEEEEEEETTS-EEEEEEE-T
T ss_pred CccEEEEEEEEcCCCCEEEEEecCC
Confidence 4789999999999999999999986
No 91
>TIGR00230 sfsA sugar fermentation stimulation protein. probable regulatory factor involved in maltose metabolism contains a putative DNA binding domain. Isolated as a gene which enabled E.coli strain MK2001 to use maltose.
Probab=49.31 E-value=22 Score=31.56 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=50.7
Q ss_pred ecceEEEeCCCceEEEEeccC------CCCCcCCccchhhhhhHHHHHHHHHHHHHhh----hh----hhccCCCCCCcc
Q psy9339 152 YGYDIIIDNQLKPWLIEVNAS------PSLTCTTVNDRILISPAEKLLATADDLYKNL----EE----TVFKLNAELGPK 217 (258)
Q Consensus 152 lG~DfllD~~~kpwLLEVN~~------P~l~~~~~~d~~~K~~~~~ll~~~~~~~~~~----~~----~~f~~~~~~~~k 217 (258)
-.+||++..+.+.++|||-+- =++.++.++.|-.|.. ..|...++. ++-+ ++ ..|.++...+|.
T Consensus 117 SRiDfll~~~~~~~~vEVKsvtL~~~~~A~FPDApT~RG~kHL-~eL~~l~~~-~ra~vlF~vqr~d~~~f~p~~~~Dp~ 194 (232)
T TIGR00230 117 SRIDFLLGESNERMYVEVKSATLKKEILALFPDAPTERGRKHL-RELEEILKE-SRAVVLFVVALPSVRAFSPNREGDEE 194 (232)
T ss_pred CcEEEEEecCCCcEEEEEccEEeCCCCEEECCCCccHHHHHHH-HHHHHHHHh-CCEEEEEEEeCCCCCEEeeCcccCHH
Confidence 678999975444789999663 2234566777777763 334444444 4321 11 258888888999
Q ss_pred hHHHHHHHHHHhh
Q psy9339 218 VQEQLAEVVKKAK 230 (258)
Q Consensus 218 ~~~~l~~~~~~~~ 230 (258)
+.+.|.++.+.+-
T Consensus 195 fa~~l~~A~~~GV 207 (232)
T TIGR00230 195 YYRLLRRAHEAGV 207 (232)
T ss_pred HHHHHHHHHHCCC
Confidence 9999998886654
No 92
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=42.08 E-value=29 Score=35.73 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=16.7
Q ss_pred ecceEEEeCCCceEEEEeccCCCC
Q psy9339 152 YGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 152 lG~DfllD~~~kpwLLEVN~~P~l 175 (258)
=|+|++.=+....|||||.----.
T Consensus 62 ~~~d~~~~~~~~~~~~e~kd~~~~ 85 (699)
T PRK14535 62 SGVDIIALHESTLWLIEIKDYYRL 85 (699)
T ss_pred ceeeEEEEcCCcEEEEEechhhhh
Confidence 467876655558899999764433
No 93
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=38.32 E-value=1.2e+02 Score=28.91 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.3
Q ss_pred ceeec-ceEEEeCCCceEEEEeccC
Q psy9339 149 FECYG-YDIIIDNQLKPWLIEVNAS 172 (258)
Q Consensus 149 FellG-~DfllD~~~kpwLLEVN~~ 172 (258)
-.++| |||..|.+|++-|+|.|+.
T Consensus 96 ~sLygRfDl~~dg~g~iKLlEyNAD 120 (387)
T COG0754 96 PSLYGRFDLAYDGDGPIKLLEYNAD 120 (387)
T ss_pred cceeeeeEEEecCCCCeEEEEecCC
Confidence 34554 8999999999999999983
No 94
>PF13635 DUF4143: Domain of unknown function (DUF4143)
Probab=34.42 E-value=36 Score=25.01 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=16.8
Q ss_pred cceEEEeCCCceEEEEecc
Q psy9339 153 GYDIIIDNQLKPWLIEVNA 171 (258)
Q Consensus 153 G~DfllD~~~kpwLLEVN~ 171 (258)
-+||++...++.+.|||-.
T Consensus 71 EVDfv~~~~~~~~~IEVK~ 89 (90)
T PF13635_consen 71 EVDFVIENGGRIIPIEVKY 89 (90)
T ss_pred EEEEEEEeCCEEEEEEEEE
Confidence 4799999888999999965
No 95
>KOG2983|consensus
Probab=31.35 E-value=39 Score=30.90 Aligned_cols=22 Identities=36% Similarity=0.745 Sum_probs=19.3
Q ss_pred eeecceEEEeCCCceEEEEecc
Q psy9339 150 ECYGYDIIIDNQLKPWLIEVNA 171 (258)
Q Consensus 150 ellG~DfllD~~~kpwLLEVN~ 171 (258)
+-|-||+-++..+|+|||.+|.
T Consensus 229 edfvfDVYi~k~~kv~lID~Np 250 (334)
T KOG2983|consen 229 EDFVFDVYITKERKVWLIDFNP 250 (334)
T ss_pred CCeeEEEEecCCCcEEEEeccC
Confidence 4588899999999999999886
No 96
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=30.29 E-value=1.4e+02 Score=30.27 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 120 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 120 ~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
.+...+.|.+..+.+-+++-- ..-. .+-|++|.++.-|.||+|+.-+.+
T Consensus 248 ~~~~R~amg~aAv~~a~avgY---~gAG-----TVEFivd~~~~f~FlEMNTRLQVE 296 (645)
T COG4770 248 TEETREAMGEAAVAAAKAVGY---VGAG-----TVEFIVDADGNFYFLEMNTRLQVE 296 (645)
T ss_pred CHHHHHHHHHHHHHHHHhcCC---CcCc-----eEEEEEcCCCcEEEEEeecceecc
Confidence 355556666555444444321 1122 356789999999999999966554
No 97
>PF13020 DUF3883: Domain of unknown function (DUF3883)
Probab=30.07 E-value=51 Score=24.34 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.8
Q ss_pred eeecceEEEeC-CCceEEEEeccCC
Q psy9339 150 ECYGYDIIIDN-QLKPWLIEVNASP 173 (258)
Q Consensus 150 ellG~DfllD~-~~kpwLLEVN~~P 173 (258)
.-.|+||.+-+ ++...+|||-+.-
T Consensus 27 ~~~gyDi~~~~~~g~~~~IEVKst~ 51 (91)
T PF13020_consen 27 DGLGYDIKSFDEDGEERFIEVKSTT 51 (91)
T ss_pred CCCCeEEEEEeCCCCEEEEEEEEEe
Confidence 34899999988 8999999998865
No 98
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=28.78 E-value=1.1e+02 Score=29.94 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=18.4
Q ss_pred ceEEEeCCCceEEEEeccCCCCC
Q psy9339 154 YDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 154 ~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
+.|++|.++++++||+|+.-+-.
T Consensus 274 vEfl~~~~~~~yfiEmN~Rlqve 296 (449)
T COG0439 274 VEFLYDSNGEFYFIEMNTRLQVE 296 (449)
T ss_pred EEEEEeCCCCEEEEEEecccccC
Confidence 45678889999999999865543
No 99
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=28.71 E-value=2.6e+02 Score=23.40 Aligned_cols=49 Identities=4% Similarity=0.093 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCc-eEEEEeccCCCCC
Q psy9339 120 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLK-PWLIEVNASPSLT 176 (258)
Q Consensus 120 ~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~k-pwLLEVN~~P~l~ 176 (258)
.+.+..+++++..+.+.+. ...-+|++.|.++++++ .|+=|+-..|.-+
T Consensus 115 ~~~~~~~a~~ia~~i~~~l--------~~vGv~~VE~Fv~~~g~~v~vNEiaPRpHnS 164 (172)
T PF02222_consen 115 SDEVEEEAKEIARKIAEAL--------DYVGVLAVEFFVTKDGDEVLVNEIAPRPHNS 164 (172)
T ss_dssp -HHHHHHHHHHHHHHHHHH--------TSSEEEEEEEEEETTSTEEEEEEEESS--GG
T ss_pred CHHHHHHHHHHHHHHHHHc--------CcEEEEEEEEEEecCCCEEEEEeccCCccCc
Confidence 3456666666654444433 23578999999999998 9999998877643
No 100
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=28.35 E-value=46 Score=31.94 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=19.7
Q ss_pred eeec-ceEEEeCCCceEEEEecc
Q psy9339 150 ECYG-YDIIIDNQLKPWLIEVNA 171 (258)
Q Consensus 150 ellG-~DfllD~~~kpwLLEVN~ 171 (258)
.++| |||.+|.++.+-|||.|+
T Consensus 106 slyGRfDfa~dg~g~~KllE~NA 128 (397)
T PHA02117 106 GLYGRFDLIMTPNGGPKMLEYNA 128 (397)
T ss_pred cEEEEEEEEEcCCCCeEEEEecC
Confidence 4665 899999999999999998
No 101
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=26.35 E-value=58 Score=31.33 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=18.2
Q ss_pred ceEEEeCC-CceEEEEeccCCCCC
Q psy9339 154 YDIIIDNQ-LKPWLIEVNASPSLT 176 (258)
Q Consensus 154 ~DfllD~~-~kpwLLEVN~~P~l~ 176 (258)
++|.+|.+ ++.|+||||..++=+
T Consensus 270 iQ~av~~~~~~~~viEvNpRvSrs 293 (400)
T COG0458 270 IQFAVDPGGGELYVIEINPRVSRS 293 (400)
T ss_pred eeEEEcCCCceEEEEEecCCcCcc
Confidence 56788876 599999999877654
No 102
>PRK00347 putative DNA-binding transcriptional regulator; Reviewed
Probab=25.29 E-value=75 Score=28.21 Aligned_cols=78 Identities=21% Similarity=0.197 Sum_probs=48.8
Q ss_pred ecceEEEeCCC-ceEEEEeccC------CCCCcCCccchhhhhhHHHHHHHHHHHHH------hhh--hhhccCCCCCCc
Q psy9339 152 YGYDIIIDNQL-KPWLIEVNAS------PSLTCTTVNDRILISPAEKLLATADDLYK------NLE--ETVFKLNAELGP 216 (258)
Q Consensus 152 lG~DfllD~~~-kpwLLEVN~~------P~l~~~~~~d~~~K~~~~~ll~~~~~~~~------~~~--~~~f~~~~~~~~ 216 (258)
-.+||+++.+. ..+++||-+- =++.++.|+.|-.|.. +.|...+..=++ ... -..|.++...+|
T Consensus 117 SR~Dfll~~~~~~~~~vEVKsvtL~~~~~A~FPDapT~RG~kHl-~eL~~l~~~G~ra~vlFvvqr~d~~~F~P~~~~Dp 195 (234)
T PRK00347 117 SRIDFLLTADDRPDCYVEVKSVTLEENGLAMFPDAVTERGQKHL-RELIELAKEGHRAVLLFLVQRSDIKRFSPADEIDP 195 (234)
T ss_pred CcEEEEEecCCCCcEEEEEcCEEeCCCCEEECCCCCcHHHHHHH-HHHHHHHHCCCcEEEEEEEeCCCCCEEeECcccCH
Confidence 56899997654 5689999542 2334666777777763 223332222111 111 135888888899
Q ss_pred chHHHHHHHHHHhh
Q psy9339 217 KVQEQLAEVVKKAK 230 (258)
Q Consensus 217 k~~~~l~~~~~~~~ 230 (258)
.+.+.|.++.+.+-
T Consensus 196 ~fa~~l~~A~~~GV 209 (234)
T PRK00347 196 KYAELLREAVKAGV 209 (234)
T ss_pred HHHHHHHHHHHCCC
Confidence 99999888876543
No 103
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=25.26 E-value=2.9e+02 Score=26.91 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=31.3
Q ss_pred HHHHHHHH-HHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCC
Q psy9339 121 NKLFTNIS-WLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPS 174 (258)
Q Consensus 121 ~~i~~~Ik-~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~ 174 (258)
+.+++++. +++..++.+...- .....-+|=.=+|++.++ |.+||.|..-.
T Consensus 240 ~e~~~~~~~~Iv~ptv~gm~~E---G~~f~GvLy~glMlt~~G-PkViEfN~RFG 290 (428)
T COG0151 240 DEVVERAVEEIVEPTVEGMAKE---GYPFRGVLYAGLMLTADG-PKVIEFNARFG 290 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc---CCCceEEEEeEEEEcCCC-cEEEEEecccC
Confidence 45555554 5555555554332 222234555678999999 99999999644
No 104
>COG4443 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.95 E-value=32 Score=24.64 Aligned_cols=15 Identities=27% Similarity=0.667 Sum_probs=10.6
Q ss_pred CccccCCc--eeeEEEE
Q psy9339 28 DMTVVGGK--KFDLRLY 42 (258)
Q Consensus 28 ~PlLi~gr--KFDiR~y 42 (258)
|..-.+|| |||||.|
T Consensus 28 n~vSwNg~~~KyDiR~W 44 (72)
T COG4443 28 NRVSWNGRPPKYDIRAW 44 (72)
T ss_pred hhcccCCCCCcCccccc
Confidence 34556776 8999875
No 105
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=22.70 E-value=54 Score=27.71 Aligned_cols=37 Identities=14% Similarity=0.007 Sum_probs=18.9
Q ss_pred ccceeeeccccCccccCCceeeEEEEEEEeeccCcEEEEEcceEEeeccc
Q psy9339 17 IIFKIVNIEEEDMTVVGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTV 66 (258)
Q Consensus 17 ~~~~IvQkYI~~PlLi~grKFDiR~yVLvts~~Pl~vyly~~g~vR~a~~ 66 (258)
.+..++|+||+. .-+| |.|+.++=-. +.+++.|....
T Consensus 69 ~~~~mvQ~flp~--i~~G---DkRii~~nG~--------~~~av~R~P~~ 105 (173)
T PF02955_consen 69 ERPVMVQPFLPE--IKEG---DKRIILFNGE--------PSHAVRRIPAK 105 (173)
T ss_dssp TS-EEEEE--GG--GGG----EEEEEEETTE--------E-SEEEEE--S
T ss_pred CccEEEEecccc--ccCC---CEEEEEECCE--------EhHHeecCCCC
Confidence 478999999953 3466 7788655432 23366777653
No 106
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=22.58 E-value=84 Score=17.34 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=10.1
Q ss_pred ceEEEeCCCceEE
Q psy9339 154 YDIIIDNQLKPWL 166 (258)
Q Consensus 154 ~DfllD~~~kpwL 166 (258)
.++..|.+++.|+
T Consensus 8 ~~i~~D~~G~lWi 20 (24)
T PF07494_consen 8 YSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEE-TTSCEEE
T ss_pred EEEEEcCCcCEEE
Confidence 3678899999997
No 107
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=21.14 E-value=1.1e+02 Score=25.58 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=17.0
Q ss_pred eeeEEEEEEEeeccCcEEEEEcceEEe
Q psy9339 36 KFDLRLYVLVTSFRPLKCYLFKLGFCR 62 (258)
Q Consensus 36 KFDiR~yVLvts~~Pl~vyly~~g~vR 62 (258)
.=|+++.|.++. -|.+||+|++....
T Consensus 117 ~eDlqvlViiSr-pPvkvf~y~dw~~p 142 (167)
T PF02041_consen 117 HEDLQVLVIISR-PPVKVFIYDDWSMP 142 (167)
T ss_dssp SS-EEEEEEEES-SS--EEEESSTTS-
T ss_pred CcceEEEEEecC-CCeEEEEeccccCc
Confidence 468999887754 59999999986543
No 108
>PHA02762 hypothetical protein; Provisional
Probab=20.96 E-value=1.1e+02 Score=21.06 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=18.7
Q ss_pred eEEEeCCCceEEEEeccCCCCC
Q psy9339 155 DIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 155 DfllD~~~kpwLLEVN~~P~l~ 176 (258)
.+++|.++--.++|+|.+|--+
T Consensus 2 ki~idn~fgnlii~~~rs~~ks 23 (62)
T PHA02762 2 KILIDNDFGNLIIEFKRNVEKS 23 (62)
T ss_pred eEEecCCCccEEEEEecCcccc
Confidence 4689999999999999998654
No 109
>KOG4276|consensus
Probab=20.85 E-value=74 Score=24.68 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=34.1
Q ss_pred eeeEEEEEEEeeccCcEEEEEcceEEeecccCCCC----Cccccccccccccccccc
Q psy9339 36 KFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDK----NITELDNMYVHLTNVSVQ 88 (258)
Q Consensus 36 KFDiR~yVLvts~~Pl~vyly~~g~vR~a~~~y~~----~~~~l~~~~~HLTN~siq 88 (258)
-+|+..||..++.. |-|..||.|-+...|-- +.++..+...|.-..++.
T Consensus 11 ~iDLG~~vip~~y~----lrh~rgygRsalRnW~fQgS~DgktWt~l~vH~DD~sl~ 63 (113)
T KOG4276|consen 11 AIDLGLEVIPTAYT----LRHARGYGRSALRNWKFQGSKDGKTWTDLRVHVDDKSLC 63 (113)
T ss_pred EEecCceEeeeeee----eeecccccHHHhhheeeeccccCCcceeEEEEecccccc
Confidence 36888898888742 56789999999887632 345666777776654443
No 110
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=20.84 E-value=94 Score=29.65 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=25.4
Q ss_pred CCceeeEEEEEEEee-------ccCcEEEEEcceEEeecc
Q psy9339 33 GGKKFDLRLYVLVTS-------FRPLKCYLFKLGFCRFCT 65 (258)
Q Consensus 33 ~grKFDiR~yVLvts-------~~Pl~vyly~~g~vR~a~ 65 (258)
++.|+|-+.|-++.. .+|.-+|+|.+||+.-..
T Consensus 99 ~~~~~d~~s~Wlvk~P~~~~pk~DpVlIYlHGGGY~l~~~ 138 (374)
T PF10340_consen 99 NQKKYDSQSYWLVKAPNRFKPKSDPVLIYLHGGGYFLGTT 138 (374)
T ss_pred cccccccceEEEEeCCcccCCCCCcEEEEEcCCeeEecCC
Confidence 356788888888861 479999999999986443
No 111
>COG5321 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.25 E-value=87 Score=25.66 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=13.7
Q ss_pred EEeCCCceEEEEeccC
Q psy9339 157 IIDNQLKPWLIEVNAS 172 (258)
Q Consensus 157 llD~~~kpwLLEVN~~ 172 (258)
.+..+|.+|++||.++
T Consensus 55 als~kGeiwIiEiKss 70 (164)
T COG5321 55 ALSPKGEIWIIEIKSS 70 (164)
T ss_pred eecCCCcEEEEEeecc
Confidence 4678999999999874
Done!