Query psy9339
Match_columns 258
No_of_seqs 183 out of 1147
Neff 6.8
Searched_HMMs 29240
Date Sat Aug 17 00:46:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9339.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9339hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tig_A TTL protein; ATP-grAsp, 100.0 2.1E-46 7.3E-51 349.1 16.6 185 17-217 180-371 (380)
2 3se7_A VANA; alpha-beta struct 97.8 0.00032 1.1E-08 63.5 13.4 52 120-179 265-316 (346)
3 1e4e_A Vancomycin/teicoplanin 97.8 0.00043 1.5E-08 62.4 14.0 51 121-179 266-316 (343)
4 4fu0_A D-alanine--D-alanine li 97.4 0.00033 1.1E-08 63.8 7.1 52 120-179 272-323 (357)
5 1i7n_A Synapsin II; synapse, p 97.3 0.0004 1.4E-08 62.7 6.6 30 149-178 256-287 (309)
6 2p0a_A Synapsin-3, synapsin II 97.2 0.00034 1.2E-08 64.2 5.6 30 149-178 273-304 (344)
7 1pk8_A RAT synapsin I; ATP bin 97.2 0.00039 1.3E-08 65.3 6.0 31 148-178 367-399 (422)
8 3k3p_A D-alanine--D-alanine li 97.0 0.0015 5E-08 60.5 7.7 52 120-179 296-347 (383)
9 2i87_A D-alanine-D-alanine lig 97.0 0.0016 5.5E-08 59.2 7.8 51 121-179 267-317 (364)
10 3tqt_A D-alanine--D-alanine li 97.0 0.0016 5.6E-08 59.9 7.9 52 120-179 276-327 (372)
11 4eg0_A D-alanine--D-alanine li 97.0 0.0011 3.8E-08 59.0 6.5 51 121-179 240-290 (317)
12 3e5n_A D-alanine-D-alanine lig 96.9 0.0018 6.2E-08 59.8 7.8 53 120-180 294-346 (386)
13 3i12_A D-alanine-D-alanine lig 96.9 0.0021 7.3E-08 58.6 7.9 51 121-179 276-326 (364)
14 2q7d_A Inositol-tetrakisphosph 96.8 0.0022 7.6E-08 58.6 7.4 31 149-179 286-317 (346)
15 1iow_A DD-ligase, DDLB, D-ALA\ 96.8 0.0025 8.6E-08 55.6 7.4 50 121-178 231-280 (306)
16 1z2n_X Inositol 1,3,4-trisphos 96.8 0.002 6.9E-08 57.0 6.3 46 125-179 259-305 (324)
17 1ehi_A LMDDL2, D-alanine:D-lac 96.7 0.0061 2.1E-07 55.8 9.1 51 121-179 277-327 (377)
18 2fb9_A D-alanine:D-alanine lig 96.6 0.0037 1.3E-07 55.9 6.7 49 122-179 248-296 (322)
19 3r5x_A D-alanine--D-alanine li 96.4 0.0073 2.5E-07 53.0 7.3 50 121-179 225-274 (307)
20 3lwb_A D-alanine--D-alanine li 96.3 0.0066 2.3E-07 55.7 6.6 51 120-179 291-341 (373)
21 2r85_A PURP protein PF1517; AT 96.0 0.0084 2.9E-07 52.9 5.9 51 123-176 241-291 (334)
22 3ax6_A Phosphoribosylaminoimid 95.9 0.015 5E-07 52.8 7.1 49 121-177 218-266 (380)
23 2pvp_A D-alanine-D-alanine lig 95.8 0.012 4.2E-07 53.8 5.9 49 121-178 282-330 (367)
24 1uc8_A LYSX, lysine biosynthes 95.5 0.017 5.9E-07 49.3 5.7 26 150-176 232-257 (280)
25 3t7a_A Inositol pyrophosphate 95.3 0.12 4.1E-06 46.7 10.6 29 149-178 267-295 (330)
26 2z04_A Phosphoribosylaminoimid 95.2 0.039 1.3E-06 49.6 7.2 29 149-177 231-259 (365)
27 3q2o_A Phosphoribosylaminoimid 94.4 0.074 2.5E-06 48.4 6.9 48 121-176 235-282 (389)
28 3k5i_A Phosphoribosyl-aminoimi 94.4 0.066 2.3E-06 49.3 6.5 48 121-176 248-295 (403)
29 3vot_A L-amino acid ligase, BL 94.1 0.089 3E-06 48.4 6.9 48 121-175 246-293 (425)
30 3aw8_A PURK, phosphoribosylami 94.0 0.13 4.6E-06 46.2 7.8 49 121-178 220-268 (369)
31 2vpq_A Acetyl-COA carboxylase; 93.8 0.1 3.5E-06 48.3 6.7 47 121-175 248-295 (451)
32 1ulz_A Pyruvate carboxylase N- 93.8 0.11 3.9E-06 48.0 6.9 47 121-175 248-294 (451)
33 4e4t_A Phosphoribosylaminoimid 93.7 0.13 4.3E-06 47.8 7.1 48 121-176 260-307 (419)
34 1kjq_A GART 2, phosphoribosylg 93.6 0.12 4.2E-06 46.6 6.6 47 121-176 240-286 (391)
35 3df7_A Putative ATP-grAsp supe 93.2 0.12 4.1E-06 45.8 5.7 29 147-177 225-253 (305)
36 2dwc_A PH0318, 433AA long hypo 92.6 0.19 6.5E-06 46.2 6.4 47 121-176 253-299 (433)
37 1vkz_A Phosphoribosylamine--gl 92.5 0.24 8.1E-06 45.5 6.9 52 121-176 242-293 (412)
38 3glk_A Acetyl-COA carboxylase 92.2 0.26 8.8E-06 47.5 7.1 48 121-176 321-368 (540)
39 3ouz_A Biotin carboxylase; str 92.1 0.28 9.6E-06 45.4 6.9 48 121-176 253-300 (446)
40 2ip4_A PURD, phosphoribosylami 92.0 0.29 9.8E-06 44.8 6.8 26 149-175 259-284 (417)
41 1w96_A ACC, acetyl-coenzyme A 91.9 0.3 1E-05 46.9 7.0 48 121-176 327-375 (554)
42 3jrx_A Acetyl-COA carboxylase 91.7 0.31 1.1E-05 47.5 7.0 48 121-176 337-384 (587)
43 3orq_A N5-carboxyaminoimidazol 91.5 0.24 8.1E-06 45.0 5.6 27 149-175 251-277 (377)
44 2yrx_A Phosphoribosylglycinami 91.2 0.32 1.1E-05 45.1 6.4 27 149-176 286-312 (451)
45 4dim_A Phosphoribosylglycinami 91.2 0.4 1.4E-05 43.4 6.9 47 121-175 236-282 (403)
46 2yw2_A Phosphoribosylamine--gl 91.2 0.3 1E-05 44.7 6.0 26 149-175 265-290 (424)
47 3mjf_A Phosphoribosylamine--gl 90.7 0.32 1.1E-05 45.1 5.8 25 150-174 271-295 (431)
48 2w70_A Biotin carboxylase; lig 90.5 0.48 1.6E-05 43.7 6.7 46 121-175 250-295 (449)
49 2qk4_A Trifunctional purine bi 90.0 0.49 1.7E-05 43.8 6.4 26 149-175 292-317 (452)
50 3vmm_A Alanine-anticapsin liga 89.7 0.38 1.3E-05 45.4 5.5 46 121-174 286-332 (474)
51 3eth_A Phosphoribosylaminoimid 89.5 0.67 2.3E-05 42.1 6.7 47 121-176 200-246 (355)
52 2xcl_A Phosphoribosylamine--gl 89.4 0.23 7.8E-06 45.5 3.6 27 149-176 265-291 (422)
53 3lp8_A Phosphoribosylamine-gly 89.2 0.69 2.4E-05 43.0 6.8 26 149-175 286-311 (442)
54 2dzd_A Pyruvate carboxylase; b 88.9 0.73 2.5E-05 42.7 6.6 46 121-175 254-299 (461)
55 3n6x_A Putative glutathionylsp 87.2 0.44 1.5E-05 45.2 4.0 47 17-67 400-453 (474)
56 3ln6_A Glutathione biosynthesi 86.7 0.71 2.4E-05 46.2 5.4 48 120-176 670-725 (750)
57 2pn1_A Carbamoylphosphate synt 86.4 0.69 2.4E-05 40.5 4.6 25 149-174 249-273 (331)
58 3u9t_A MCC alpha, methylcroton 85.4 0.53 1.8E-05 46.5 3.7 47 121-175 275-321 (675)
59 3n6r_A Propionyl-COA carboxyla 84.9 0.72 2.5E-05 45.6 4.4 48 121-176 249-296 (681)
60 2qf7_A Pyruvate carboxylase pr 84.3 1.5 5.3E-05 45.9 6.7 48 121-176 268-316 (1165)
61 3ln7_A Glutathione biosynthesi 84.1 1 3.6E-05 45.1 5.2 48 120-176 676-731 (757)
62 1a9x_A Carbamoyl phosphate syn 82.2 2.1 7.2E-05 44.4 6.7 45 121-174 803-847 (1073)
63 4ffl_A PYLC; amino acid, biosy 80.7 2 7E-05 38.1 5.4 24 150-174 222-246 (363)
64 1a9x_A Carbamoyl phosphate syn 79.0 3.4 0.00012 42.8 7.0 47 121-174 258-305 (1073)
65 3hbl_A Pyruvate carboxylase; T 76.5 3.9 0.00013 42.8 6.6 47 121-176 252-298 (1150)
66 2r7k_A 5-formaminoimidazole-4- 74.5 4.5 0.00015 36.7 5.7 51 123-175 267-317 (361)
67 3va7_A KLLA0E08119P; carboxyla 74.2 5 0.00017 42.4 6.7 47 121-175 277-324 (1236)
68 1gsa_A Glutathione synthetase; 73.4 2.9 0.0001 35.7 4.1 23 17-44 192-214 (316)
69 2pbz_A Hypothetical protein; N 49.1 20 0.00068 31.8 4.9 26 147-174 245-270 (320)
70 4e9m_A Nucleotide-binding olig 45.2 1 3.6E-05 35.8 -3.7 17 161-177 105-121 (144)
71 3n6x_A Putative glutathionylsp 35.0 27 0.00091 33.0 3.6 27 149-175 142-169 (474)
72 2q7d_A Inositol-tetrakisphosph 29.9 33 0.0011 30.6 3.2 21 18-44 194-214 (346)
73 3le4_A Microprocessor complex 28.0 81 0.0028 22.1 4.2 30 42-71 33-62 (79)
No 1
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=100.00 E-value=2.1e-46 Score=349.10 Aligned_cols=185 Identities=27% Similarity=0.476 Sum_probs=133.9
Q ss_pred ccceeeeccccCcccc--CCceeeEEEEEEEeeccCcEEEEEcceEEeecccCCCCCccccccccccccccccccc-CCC
Q psy9339 17 IIFKIVNIEEEDMTVV--GGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKH-GAD 93 (258)
Q Consensus 17 ~~~~IvQkYI~~PlLi--~grKFDiR~yVLvts~~Pl~vyly~~g~vR~a~~~y~~~~~~l~~~~~HLTN~siqk~-~~~ 93 (258)
...+|||+||++|+|+ +|||||||+|||||| |+++|+|++|++|+|+.+|++ ++++|.++||||+|+||+ +++
T Consensus 180 ~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts--~l~vy~y~~g~~Rfa~~~y~~--~~~~~~~~HLTN~~iqk~~~~~ 255 (380)
T 3tig_A 180 GQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSD--TNFQDMTSHLTNHCIQKEHSKN 255 (380)
T ss_dssp TSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT--TCCEEECSCCEEEECC-----------------------------
T ss_pred CCcEEEEecccCceeecCCCceeEEEEEEEEcC--CCEEEEEcCCEEEecCCCcCc--cchhhhhhhccccccccccccc
Confidence 4689999999999999 999999999999998 999999999999999999985 578899999999999996 567
Q ss_pred CCcc-cCCccCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhhhhcc---CCCcceeecceEEEeCCCceEEEEe
Q psy9339 94 YNNI-HGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMAN---DKHCFECYGYDIIIDNQLKPWLIEV 169 (258)
Q Consensus 94 ~~~~-~g~~~sl~~l~~~l~~~~g~~~~~~i~~~Ik~ii~~~l~a~~~~l~~---~~~~FellG~DfllD~~~kpwLLEV 169 (258)
|+.. +|++|++++|+.||++..|.++.+.+|++|+++|++++.|+++.+.. ..+|||+||+|||||++++||||||
T Consensus 256 y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a~~~~i~~~~~~~~~FEl~G~D~lid~~l~~wllEV 335 (380)
T 3tig_A 256 YGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKYLPYHSFQLFGFDFMVDKNLKVWLIEV 335 (380)
T ss_dssp -------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHHHHHHHCCTTSSSEECEEEEEEEEEBTTCCEEEEEE
T ss_pred cccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEeEEEEEcCCCcEEEEEE
Confidence 8764 58899999999999876677777889999999999999999887765 3689999999999999999999999
Q ss_pred ccCCCCCcCCccchhhhhhHHHHHHHHHHHHHhhhhhhccCCCCCCcc
Q psy9339 170 NASPSLTCTTVNDRILISPAEKLLATADDLYKNLEETVFKLNAELGPK 217 (258)
Q Consensus 170 N~~P~l~~~~~~d~~~K~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~k 217 (258)
|.+|++... .+.+ ++++++++++++.|+++....+.
T Consensus 336 N~~P~~~q~---------~i~~---l~~~~~~iavdp~f~~~~~~~~~ 371 (380)
T 3tig_A 336 NGAPACAQK---------LYAE---LCKGIVDLAISSVFPLNEENHKP 371 (380)
T ss_dssp ESSCCCCTT---------THHH---HHHHHHHHTTTTTSCCCC-----
T ss_pred eCCCCccHH---------hHHH---HHHHHHHHhcccccCCccccCCC
Confidence 999999631 3343 35889999999999999655543
No 2
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=97.78 E-value=0.00032 Score=63.46 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 120 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 120 ~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
...+.++|.+++.+++.+. .|.-..++||++|++++||++|||+.|.+...+
T Consensus 265 ~~~~~~~i~~~a~~~~~~l--------g~~G~~~vD~~~~~~g~~~vlEiN~rPG~t~~s 316 (346)
T 3se7_A 265 STTSRSLVQDTAKAVYRAL--------GCRGLSRVDLFLTEDGKVVLNEVNTFPGMTSYS 316 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEECTTSCEEEEEEESSCCCSTTC
T ss_pred CHHHHHHHHHHHHHHHHHh--------CCceEEEEEEEEeCCCCEEEEEEeCCCCCCccc
Confidence 3556667777765555554 233679999999999999999999999997655
No 3
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=97.77 E-value=0.00043 Score=62.43 Aligned_cols=51 Identities=20% Similarity=0.200 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
+.+.+++++++.+++.+. .+.-..++||++|++++||+||||+.|++...+
T Consensus 266 ~~~~~~i~~~a~~~~~al--------g~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s 316 (343)
T 1e4e_A 266 AEERGRIQETVKKIYKTL--------GCRGLARVDMFLQDNGRIVLNEVNTLPGFTSYS 316 (343)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCEEEEEEEEEECTTCCEEEEEEESSCCCSTTC
T ss_pred HHHHHHHHHHHHHHHHHc--------CCceEEEEEEEEeCCCCEEEEEeeCCCCCCccc
Confidence 455666777765555543 234679999999999999999999999997544
No 4
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=97.35 E-value=0.00033 Score=63.83 Aligned_cols=52 Identities=19% Similarity=0.157 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 120 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 120 ~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
.+.+.++|+++..+++.+. +|.-+.++||++|+++++|++|||+.|+|...+
T Consensus 272 ~~~~~~~i~~~A~~~~~aL--------g~~G~~~VDf~~~~dg~~~vlEvNt~PG~t~~S 323 (357)
T 4fu0_A 272 DAEAEKRIQEAAVTIYKAL--------GCSGFSRVDMFYTPSGEIVFNEVNTIPGFTSHS 323 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTC
T ss_pred CHHHHHHHHHHHHHHHHHh--------CCcceEEEEEEEeCCCCEEEEEEeCCCCCCccc
Confidence 4566677777776655554 234568899999999999999999999997655
No 5
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=97.27 E-value=0.0004 Score=62.73 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=27.6
Q ss_pred ceeecceEEEeCCCceEEEEecc--CCCCCcC
Q psy9339 149 FECYGYDIIIDNQLKPWLIEVNA--SPSLTCT 178 (258)
Q Consensus 149 FellG~DfllD~~~kpwLLEVN~--~P~l~~~ 178 (258)
..+.|+|++.+.+++++++|||. +|.+...
T Consensus 256 ldi~GVDll~~~~g~~~V~EVN~~~~P~~~~~ 287 (309)
T 1i7n_A 256 LDICAVKAVHGKDGKDYIFEVMDCSMPLIGEH 287 (309)
T ss_dssp CSEEEEEEEEETTSCEEEEEEECTTCCCCSSC
T ss_pred CCEEEEEEEEcCCCCEEEEEECCCCCCCccch
Confidence 78899999999999999999999 9999743
No 6
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=97.22 E-value=0.00034 Score=64.16 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=27.4
Q ss_pred ceeecceEEEeCCCceEEEEecc--CCCCCcC
Q psy9339 149 FECYGYDIIIDNQLKPWLIEVNA--SPSLTCT 178 (258)
Q Consensus 149 FellG~DfllD~~~kpwLLEVN~--~P~l~~~ 178 (258)
..+.|+|++.+.+++++++|||. +|.+...
T Consensus 273 ldi~GVDll~~~~G~~~VlEVN~~~~P~~~~~ 304 (344)
T 2p0a_A 273 LDICAVKAVHSKDGRDYIIEVMDSSMPLIGEH 304 (344)
T ss_dssp CSEEEEEEEEETTSCEEEEEEECTTCCCCGGG
T ss_pred CCEEEEEEEEcCCCCEEEEEEcCCCCCcccch
Confidence 78899999999999999999999 9999743
No 7
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=97.20 E-value=0.00039 Score=65.33 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=27.9
Q ss_pred cceeecceEEEeCCCceEEEEecc--CCCCCcC
Q psy9339 148 CFECYGYDIIIDNQLKPWLIEVNA--SPSLTCT 178 (258)
Q Consensus 148 ~FellG~DfllD~~~kpwLLEVN~--~P~l~~~ 178 (258)
...+.|+|++.+++++++++|||. +|.+...
T Consensus 367 GldiaGVDlL~s~dG~~~VlEVN~s~~P~~~g~ 399 (422)
T 1pk8_A 367 GLDICAVEALHGKDGRDHIIEVVGSSMPLIGDH 399 (422)
T ss_dssp CCSEEEEEEEEETTSCEEEEEEECTTCCCCTTC
T ss_pred CCCEEEEEEEEcCCCCEEEEEECCCCCCCccch
Confidence 378999999999999999999999 9999743
No 8
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=96.99 E-value=0.0015 Score=60.47 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 120 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 120 ~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
.+.+.++|++++.+++.+. .|.-..++||++|++++||++|||+.|.+...+
T Consensus 296 ~~~~~~~i~~~a~~~~~aL--------g~~G~~~vDf~~~~~g~~~vlEINtrPG~t~~S 347 (383)
T 3k3p_A 296 DPVIVEKMRDYAATAFRTL--------GCCGLSRCDFFLTEDGKVYLNELNTMPGFTQWS 347 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCC--C
T ss_pred CHHHHHHHHHHHHHHHHHc--------CCceEEEEEEEEECCCCEEEEEeeCCCCCCccc
Confidence 3556667777765555543 233578899999999999999999999997655
No 9
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=96.99 E-value=0.0016 Score=59.16 Aligned_cols=51 Identities=16% Similarity=0.297 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
..+.+++++++.+++.+. .+.-..++||++|++++||+||||+.|++...+
T Consensus 267 ~~~~~~i~~~a~~~~~al--------g~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s 317 (364)
T 2i87_A 267 EDVQLTLRNMALEAFKAT--------DCSGLVRADFFVTEDNQIYINETNAMPGFTAFS 317 (364)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTS
T ss_pred HHHHHHHHHHHHHHHHHc--------CCCcEEEEEEEEecCCCEEEEEEeCCCCCCchh
Confidence 456667777765555544 223678999999999999999999999986544
No 10
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=96.99 E-value=0.0016 Score=59.90 Aligned_cols=52 Identities=21% Similarity=0.348 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 120 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 120 ~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
...+.++|++++.+++.+. .|.-..++||++|++++||++|||+.|.|...+
T Consensus 276 ~~~~~~~i~~~a~~~~~aL--------g~~G~~rvDf~~~~dg~~~vlEINt~PG~t~~S 327 (372)
T 3tqt_A 276 SESVTKQIQQIAIDAFKMV--------HCSGMARVDFFVTPNNKVLVNEINTIPGFTNIS 327 (372)
T ss_dssp CHHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTC
T ss_pred CHHHHHHHHHHHHHHHHHh--------CCccEEEEEEEEeCCCcEEEEEEECCCCcCccC
Confidence 3556677777776655553 234578999999999999999999999998655
No 11
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=96.98 E-value=0.0011 Score=58.96 Aligned_cols=51 Identities=18% Similarity=0.342 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
....+++.+++.+++.+. .|.-..++||++|++++||+||||+.|.+...+
T Consensus 240 ~~~~~~l~~~a~~~~~~l--------g~~G~~~vD~~~~~~g~~~vlEiN~~pg~t~~s 290 (317)
T 4eg0_A 240 AEQETELKRIARRAFDVL--------GCTDWGRADFMLDAAGNAYFLEVNTAPGMTDHS 290 (317)
T ss_dssp HHHHHHHHHHHHHHHHTT--------TCCSEEEEEEEECTTCCEEEEEEESSCCCSTTS
T ss_pred HHHHHHHHHHHHHHHHHh--------CCCceEEEEEEEeCCCCEEEEEeeCCCCCCccc
Confidence 445566666654444433 223478899999999999999999999997655
No 12
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=96.94 E-value=0.0018 Score=59.77 Aligned_cols=53 Identities=19% Similarity=0.247 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCCc
Q psy9339 120 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTV 180 (258)
Q Consensus 120 ~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~~ 180 (258)
...+.++|.+++.+++.+. .|.-+.++||++|++++||++|||+.|.+...+-
T Consensus 294 ~~~~~~~i~~~a~~~~~aL--------g~~G~~~vDf~~~~dg~~~vlEiN~~PG~t~~S~ 346 (386)
T 3e5n_A 294 DAQTQQRIQQIAVQAYQAL--------GCAGMARVDVFLCADGRIVINEVNTLPGFTRISV 346 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHH--------TCCSEEEEEEEECTTCCEEEEEEESSCCCSTTCH
T ss_pred CHHHHHHHHHHHHHHHHHh--------CCccEEEEEEEEECCCcEEEEEeECCCCCCccCH
Confidence 3556677777766655554 2234688999999999999999999999976653
No 13
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=96.91 E-value=0.0021 Score=58.59 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
..+.++|.+++.+++.+. .|.-..++||++|++++||++|||+.|.+...+
T Consensus 276 ~~~~~~i~~~a~~~~~al--------g~~G~~~vD~~~~~~g~~~vlEiN~~Pg~t~~s 326 (364)
T 3i12_A 276 SEVNDKIRAIAIQAYQTL--------GCAGMARVDVFLTADNEVVINEINTLPGFTNIS 326 (364)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTC
T ss_pred HHHHHHHHHHHHHHHHHh--------CCceEEEEEEEEecCCCEEEEEeeCCCCCCCCC
Confidence 456666777765555543 234578899999999999999999999997655
No 14
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=96.84 E-value=0.0022 Score=58.55 Aligned_cols=31 Identities=32% Similarity=0.509 Sum_probs=27.1
Q ss_pred ceeecceEEEeC-CCceEEEEeccCCCCCcCC
Q psy9339 149 FECYGYDIIIDN-QLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 149 FellG~DfllD~-~~kpwLLEVN~~P~l~~~~ 179 (258)
..++|+|+++|+ +++||+||||..|++....
T Consensus 286 l~~~gvDii~~~~~g~~~VlEVN~~PG~~g~~ 317 (346)
T 2q7d_A 286 VSLFGIDIIINNQTGQHAVIDINAFPGYEGVS 317 (346)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEEESCCCTTCT
T ss_pred CceEeeEEEeecCCCCEEEEEEeCCccccccc
Confidence 347899999997 7899999999999998654
No 15
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=96.83 E-value=0.0025 Score=55.62 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCT 178 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~ 178 (258)
..+.+++.+++.+++.+. ++.-.+++||++|++++||++|||..|.....
T Consensus 231 ~~~~~~i~~~a~~~~~~l--------g~~G~~~vD~~~~~~g~~~~iEiN~rpg~~~~ 280 (306)
T 1iow_A 231 ASQEANLQALVLKAWTTL--------GCKGWGRIDVMLDSDGQFYLLEANTSPGMTSH 280 (306)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCCSEEEEEEEECTTSCEEEEEEESSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHc--------CCceEEEEEEEEcCCCCEEEEEecCCCCCCCC
Confidence 445566666665555443 22457899999999999999999999998654
No 16
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=96.75 E-value=0.002 Score=57.05 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCcceeecceEEEe-CCCceEEEEeccCCCCCcCC
Q psy9339 125 TNISWLIVHSLKSVSYIMANDKHCFECYGYDIIID-NQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 125 ~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD-~~~kpwLLEVN~~P~l~~~~ 179 (258)
+++.+++.++..+. ++ ...|+||++| +++++|+||||..|++....
T Consensus 259 ~~i~~~a~~~~~~l--------g~-~~~~vD~~~~~~~g~~~vlEvN~~Pg~~~~~ 305 (324)
T 1z2n_X 259 AEMRDLAYKVRCAL--------GV-QLCGIDFIKENEQGNPLVVDVNVFPSYGGKV 305 (324)
T ss_dssp HHHHHHHHHHHHHH--------TC-SEEEEEEECGGGCSSCEEEEEEESCCTTSCB
T ss_pred HHHHHHHHHHHHHh--------CC-cEEeeEEEEEcCCCCEEEEEEcCCCCcCCCC
Confidence 35555554444443 12 2589999999 56999999999999997654
No 17
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=96.68 E-value=0.0061 Score=55.79 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
....++|++++.+++.+. .|.-..++||++|.+++||+||||+.|++...+
T Consensus 277 ~~~~~~i~~~a~~~~~al--------g~~G~~~vD~~~~~~g~~~vlEiN~rpg~t~~s 327 (377)
T 1ehi_A 277 PEVTKEVKQMALDAYKVL--------NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMS 327 (377)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTC
T ss_pred HHHHHHHHHHHHHHHHHc--------CCCcEEEEEEEEeCCCCEEEEEEeCCCCCCccc
Confidence 456667777765555543 233678999999999999999999999987654
No 18
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=96.57 E-value=0.0037 Score=55.94 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 122 KLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 122 ~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
.+.+++++++.+++.+. .|.-..++||++| +++||++|||+.|++...+
T Consensus 248 ~~~~~i~~~a~~~~~al--------g~~G~~~vD~~~~-~g~~~vlEiN~rpg~t~~s 296 (322)
T 2fb9_A 248 GTQETVQELALKAYKVL--------GVRGMARVDFFLA-EGELYLNELNTIPGFTPTS 296 (322)
T ss_dssp THHHHHHHHHHHHHHHH--------TCCSEEEEEEEEE-TTEEEEEEEESSCCCSSSC
T ss_pred HHHHHHHHHHHHHHHHh--------CCceEEEEEEEEE-CCcEEEEEEECCCCCCccc
Confidence 34556666665555543 2236789999999 9999999999999997554
No 19
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=96.38 E-value=0.0073 Score=52.97 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
....+++.+++.+++.+. .+.-..++||++| +++||+||||..|.+...+
T Consensus 225 ~~~~~~i~~~a~~~~~~l--------g~~G~~~vD~~~~-~g~~~vlEiN~rpg~~~~s 274 (307)
T 3r5x_A 225 AELKERVNKASLACYKAL--------KCSVYARVDMMVK-DGIPYVMEVNTLPGMTQAS 274 (307)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCCSEEEEEEEEE-TTEEEEEEEESSCCCSTTS
T ss_pred HHHHHHHHHHHHHHHHHh--------CCCceEEEEEEEE-CCeEEEEEEcCCCCCCccC
Confidence 345556666654444443 1223678999999 6999999999999997654
No 20
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=96.26 E-value=0.0066 Score=55.68 Aligned_cols=51 Identities=16% Similarity=0.311 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcCC
Q psy9339 120 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 179 (258)
Q Consensus 120 ~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~~ 179 (258)
...+.++|++++.+++.+. .|.-+.++||++|+++. |++|||+.|.+...+
T Consensus 291 ~~~~~~~i~~~a~~~~~aL--------g~~G~~~vDf~~~~dg~-~vlEIN~~PG~t~~S 341 (373)
T 3lwb_A 291 DDQVAEAIRQLAIRAFAAI--------DCRGLARVDFFLTDDGP-VINEINTMPGFTTIS 341 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHT--------TCCSEEEEEEEEETTEE-EEEEEESSCCCSTTS
T ss_pred CHHHHHHHHHHHHHHHHHh--------CCccEEEEEEEEECCCC-EEEEecCCCCCCccc
Confidence 4566777777776666554 23357899999999999 999999999987654
No 21
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=96.03 E-value=0.0084 Score=52.90 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 123 LFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 123 i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
+.+++.+++.+++.+.... ...+.-.+++||++|++++||+||||..|...
T Consensus 241 ~~~~i~~~a~~~~~~l~~~---~~~~~G~~~vd~~~~~~g~~~viEiN~R~g~~ 291 (334)
T 2r85_A 241 LLMDVIEAGERVVKAAEEL---MGGLWGPFCLEGVFTPDLEFVVFEISARIVAG 291 (334)
T ss_dssp GHHHHHHHHHHHHHHHHHH---SSCCCEEEEEEEEECTTSCEEEEEEECSCCGG
T ss_pred HHHHHHHHHHHHHHHHHhh---cccccccEEEEEEECCCCCEEEEEEeCCcCCC
Confidence 4455566655555544211 11456789999999999999999999999874
No 22
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=95.90 E-value=0.015 Score=52.79 Aligned_cols=49 Identities=10% Similarity=0.159 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCc
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTC 177 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~ 177 (258)
+.+.+++.+++.+++.+. .+.-.+++||++|++++||++|||..|....
T Consensus 218 ~~~~~~~~~~a~~~~~~l--------g~~G~~~vd~~~~~~g~~~viEiN~R~~~~~ 266 (380)
T 3ax6_A 218 EKYSKIAREIATSVVEAL--------EGVGIFGIEMFLTKQGEILVNEIAPRPHNSG 266 (380)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEEETTSCEEEEEEESSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHC--------CCeEEEEEEEEEeCCCcEEEEEecCCCCCCc
Confidence 445566666665555544 1235799999999999999999999998753
No 23
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=95.77 E-value=0.012 Score=53.81 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCT 178 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~ 178 (258)
+.+.++|++++.+++++. .|.-..++||++| +++||++|||+.|++...
T Consensus 282 ~~~~~~i~~~a~~~~~aL--------g~~G~~~vDf~~~-~g~~~vlEiN~rpg~t~~ 330 (367)
T 2pvp_A 282 NALEEQLKENFKKLYSDL--------FDGAIIRCDFFVI-ENEVYLNEINPIPGSLAN 330 (367)
T ss_dssp HHHHHHHHHHHHHHHTTT--------STTCCEEEEEEEE-TTEEEEEEEESSCGGGGG
T ss_pred HHHHHHHHHHHHHHHHHc--------CCCCEEEEEEEEE-CCeEEEEEEeCCCCCCcc
Confidence 455666666654444332 2345689999999 899999999999998543
No 24
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=95.53 E-value=0.017 Score=49.34 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=23.4
Q ss_pred eeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 150 ECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 150 ellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
..+|+||++|+++ ||+||||..|++.
T Consensus 232 g~~~vD~~~~~~g-~~~iEiN~r~g~~ 257 (280)
T 1uc8_A 232 GVVAVDLFESERG-LLVNEVNHTMEFK 257 (280)
T ss_dssp SEEEEEEEEETTE-EEEEEEETTCCCT
T ss_pred CeEEEEEEEeCCC-eEEEEEeCCCCcc
Confidence 4789999999996 9999999999875
No 25
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=95.33 E-value=0.12 Score=46.69 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=24.3
Q ss_pred ceeecceEEEeCCCceEEEEeccCCCCCcC
Q psy9339 149 FECYGYDIIIDNQLKPWLIEVNASPSLTCT 178 (258)
Q Consensus 149 FellG~DfllD~~~kpwLLEVN~~P~l~~~ 178 (258)
-.+.|+|++-+. ++|+++|||.-|-....
T Consensus 267 ~~v~GVDlLrs~-~~~~V~EVNg~~fvk~~ 295 (330)
T 3t7a_A 267 QTVCGFDLLRAN-GQSYVCDVNGFSFVKNS 295 (330)
T ss_dssp BSEEEEEEEEET-TEEEEEEEEESCCCSSC
T ss_pred CceEEEEEEEEC-CccEEEEeCCCccccCc
Confidence 367999999985 67999999999988754
No 26
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=95.21 E-value=0.039 Score=49.59 Aligned_cols=29 Identities=7% Similarity=0.028 Sum_probs=25.4
Q ss_pred ceeecceEEEeCCCceEEEEeccCCCCCc
Q psy9339 149 FECYGYDIIIDNQLKPWLIEVNASPSLTC 177 (258)
Q Consensus 149 FellG~DfllD~~~kpwLLEVN~~P~l~~ 177 (258)
.-.+++||++|++++||+||||..|....
T Consensus 231 ~G~~~vd~~~~~~g~~~~iEiN~R~~~~~ 259 (365)
T 2z04_A 231 VGVFTVEFFLLKDGRVLINEFAPRVHNTG 259 (365)
T ss_dssp CEEEEEEEEECTTSCEEEEEEESSCCGGG
T ss_pred EEEEEEEEEEeCCCcEEEEEeccCcCCCc
Confidence 35789999999999999999999998743
No 27
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=94.40 E-value=0.074 Score=48.43 Aligned_cols=48 Identities=6% Similarity=0.038 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
..+.+++.+++.+++.+. .+.-.+++||++|.++++|++|||..|+..
T Consensus 235 ~~~~~~~~~~a~~~~~~l--------g~~G~~~ve~~~~~dg~~~viEiNpR~~~s 282 (389)
T 3q2o_A 235 EELSQKAIAYAKVLADEL--------ELVGTLAVEMFATADGEIYINELAPRPHNS 282 (389)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTSCEEEEEEESSCCGG
T ss_pred HHHHHHHHHHHHHHHHHc--------CCeeEEEEEEEEeCCCCEEEEEeeCCCCCc
Confidence 345555666654444443 223579999999999999999999999864
No 28
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=94.37 E-value=0.066 Score=49.32 Aligned_cols=48 Identities=8% Similarity=0.093 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
..+.+++.+++.+++.+. .+.-++++||++|.++++|++|||..|...
T Consensus 248 ~~~~~~~~~~a~~i~~~L--------g~~G~~~ve~~~~~dg~~~v~EiNpR~~~s 295 (403)
T 3k5i_A 248 DAINQKAQELARKAVAAF--------DGKGVFGVEMFLLEDDSIMLCEIASRIHNS 295 (403)
T ss_dssp HHHHHHHHHHHHHHHHTS--------CCSEEEEEEEEEETTSCEEEEEEESSCCGG
T ss_pred HHHHHHHHHHHHHHHHHc--------CCeeEEEEEEEEeCCCcEEEEEeecCCCCC
Confidence 345555665554444332 234679999999999999999999999864
No 29
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=94.14 E-value=0.089 Score=48.36 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
+....++.+.+.+++.+.. - ..-.+.+||++|.+|+||+||||..|.-
T Consensus 246 ~~~~~~i~~~~~~~~~alg----~---~~G~~~ve~~~~~dG~~~~iEiN~R~gG 293 (425)
T 3vot_A 246 EETRLAIVKEVTGAVSALG----I---HQGPAHTELRLDKDGTPYVIEVGARIGG 293 (425)
T ss_dssp HHHHHHHHHHHHHHHHHTT----C---CSEEEEEEEEECTTCCEEEEEEESSCGG
T ss_pred HHHHHHHHHHHHHHHHHcC----C---CcceEEEEEEEEeCCcEEEEEEecCCCC
Confidence 3445556666555544431 0 1356889999999999999999999964
No 30
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=94.05 E-value=0.13 Score=46.16 Aligned_cols=49 Identities=4% Similarity=0.016 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCCcC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCT 178 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~~~ 178 (258)
....+++.+++.+++.+. .+.-.+++||++|+ ++||+||||..|.....
T Consensus 220 ~~~~~~~~~~a~~~~~~l--------g~~G~~~vd~~~~~-~~~~viEiN~R~~~~~~ 268 (369)
T 3aw8_A 220 EALQKKAEAYALRAMEAL--------DYVGVLALEFFQVG-EELLFNEMAPRVHNSGH 268 (369)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEEET-TEEEEEEEESSCCGGGT
T ss_pred HHHHHHHHHHHHHHHHHC--------CCeeEEEEEEEEEC-CcEEEEEEeCCcCCccc
Confidence 344555666555554443 12357889999999 89999999999987543
No 31
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=93.85 E-value=0.1 Score=48.31 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEe-CCCceEEEEeccCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIID-NQLKPWLIEVNASPSL 175 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD-~~~kpwLLEVN~~P~l 175 (258)
..+.+++.+.+.+++.+. . .--.+++||++| ++++||+||||..|.-
T Consensus 248 ~~~~~~i~~~a~~~~~~l----g----~~G~~~ve~~~~~~~g~~~viEiN~R~~~ 295 (451)
T 2vpq_A 248 DETRREMGNAAVRAAKAV----N----YENAGTIEFIYDLNDNKFYFMEMNTRIQV 295 (451)
T ss_dssp HHHHHHHHHHHHHHHHHT----T----CCEEEEEEEEEETTTTEEEEEEEECSCCT
T ss_pred HHHHHHHHHHHHHHHHHc----C----CcceEEEEEEEECCCCCEEEEEeeCCCCC
Confidence 345566666665555542 1 124688999999 8999999999999864
No 32
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=93.76 E-value=0.11 Score=48.00 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
..+.+++.+.+.+++.+. . ..-.+++||++|.+++||+||||..|.-
T Consensus 248 ~~~~~~i~~~a~~~~~~l----g----~~G~~~ve~~~~~~g~~~viEiN~R~~~ 294 (451)
T 1ulz_A 248 PEKREYYGNIVTKAAKEI----G----YYNAGTMEFIADQEGNLYFIEMNTRIQV 294 (451)
T ss_dssp HHHHHHHHHHHHHHHHHT----T----CCEEEEEEEEECTTCCEEEEEEECSCCT
T ss_pred HHHHHHHHHHHHHHHHHc----C----CCcceEEEEEEeCCCCEEEEEeeCCCCc
Confidence 344555666655555442 1 1235789999999999999999999864
No 33
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=93.73 E-value=0.13 Score=47.79 Aligned_cols=48 Identities=6% Similarity=-0.036 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
..+.+++.+++.+++.+. .+.-++++||++|.++++|++|||..|.-.
T Consensus 260 ~~~~~~~~~~a~~i~~~l--------g~~G~~~vE~~~~~dG~~~v~EiNpR~~~s 307 (419)
T 4e4t_A 260 TARVEEAQQAAVRIADTL--------GYVGVLCVEFFVLEDGSFVANEMAPRPHNS 307 (419)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEEETTCCEEEEEEESSCCGG
T ss_pred HHHHHHHHHHHHHHHHHC--------CCeeEEEEEEEEeCCCCEEEEEEeCCCCCC
Confidence 344555666554444443 124578999999999999999999999854
No 34
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=93.56 E-value=0.12 Score=46.58 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
..+.+++.+++..++.+.. +.-.+++||++|++ +||+||||..|.-.
T Consensus 240 ~~~~~~~~~~a~~~~~~lg--------~~G~~~ve~~~~~~-~~~viEiN~R~~~~ 286 (391)
T 1kjq_A 240 PLALERAQEIARKVVLALG--------GYGLFGVELFVCGD-EVIFSEVSPRPHDT 286 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------SSEEEEEEEEEETT-EEEEEEEESSCCGG
T ss_pred HHHHHHHHHHHHHHHHHcC--------CeeEEEEEEEEeCC-cEEEEEEECCCCCC
Confidence 3455566666655555442 24679999999988 99999999998843
No 35
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=93.19 E-value=0.12 Score=45.80 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=24.2
Q ss_pred CcceeecceEEEeCCCceEEEEeccCCCCCc
Q psy9339 147 HCFECYGYDIIIDNQLKPWLIEVNASPSLTC 177 (258)
Q Consensus 147 ~~FellG~DfllD~~~kpwLLEVN~~P~l~~ 177 (258)
.+.-..|+||++| ++||++|||..|....
T Consensus 225 g~~G~~~vD~~~~--~~~~viEiNpR~~~~~ 253 (305)
T 3df7_A 225 GLNGYVGVDIVYS--DQPYVIEINARLTTPV 253 (305)
T ss_dssp TCCEEEEEEEEES--SSEEEEEEESSCCGGG
T ss_pred CCcCceEEEEEEC--CCEEEEEEcCCCCCCH
Confidence 3346799999997 7899999999999853
No 36
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=92.61 E-value=0.19 Score=46.24 Aligned_cols=47 Identities=17% Similarity=0.314 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
..+.+++.+++..++.+.. +.-.+++||++|++ +||+||||..|.-.
T Consensus 253 ~~~~~~i~~~a~~~~~~lg--------~~G~~~ve~~~~~~-~~~viEiN~R~~~~ 299 (433)
T 2dwc_A 253 EKAEREVYRIAKRITDVLG--------GLGIFGVEMFVKGD-KVWANEVSPRPHDT 299 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------SSEECEEEEEEETT-EEEEEEEESSCCGG
T ss_pred HHHHHHHHHHHHHHHHHcC--------CeeEEEEEEEEeCC-cEEEEEEeCCcCCC
Confidence 4455666666655555442 24678999999988 99999999999853
No 37
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=92.47 E-value=0.24 Score=45.47 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
+.+.+++++++..++.+... ....+--.+++||++++++ ||+||||..|+-.
T Consensus 242 ~~~~~~i~~~a~~~~~~l~~---~g~~~~G~~~ve~~~~~~g-~~viEiN~R~g~~ 293 (412)
T 1vkz_A 242 SDTIKKIEELFDKTLWGVEK---EGYAYRGFLYLGLMLHDGD-PYILEYNVRLGDP 293 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---TTCCCEEEEEEEEEEETTE-EEEEEEESSCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHh---cCCCcEEEEEEEEEEECCC-cEEEEEecCCCCC
Confidence 45556666666555555421 0112336788999999998 9999999999754
No 38
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=92.24 E-value=0.26 Score=47.46 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
..+.++|.+++.++..+.. +.-..++||++|.++++|+||||..|+-.
T Consensus 321 ~~~~~~l~~~a~~~~~alG--------~~G~~~VEf~~d~dg~~~~lEiNpR~~~~ 368 (540)
T 3glk_A 321 LAIFEFMEQCAIRLAKTVG--------YVSAGTVEYLYSQDGSFHFLELNPRLQVE 368 (540)
T ss_dssp HHHHHHHHHHHHHHHHHHT--------CCEEEEEEEEEETTSCEEEEEEECSCCTT
T ss_pred HHHHHHHHHHHHHHHHHcC--------CccceEEEEEEcCCCCEEEEEEECCCCCc
Confidence 4455666666655554431 12457899999999999999999999753
No 39
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=92.07 E-value=0.28 Score=45.36 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
..+.++|.+.+.+++.+.. .--.+++||++|+++++|+||||..|+-.
T Consensus 253 ~~~~~~l~~~a~~~~~~lg--------~~G~~~ve~~~~~~g~~~~iEiNpR~~g~ 300 (446)
T 3ouz_A 253 EKTRTRLHETAIKAAKAIG--------YEGAGTFEFLVDKNLDFYFIEMNTRLQVE 300 (446)
T ss_dssp HHHHHHHHHHHHHHHHHTT--------CCEEEEEEEEECTTCCEEEEEEESSCCTT
T ss_pred HHHHHHHHHHHHHHHHHcC--------CCCceEEEEEEeCCCCEEEEEeECCCCCc
Confidence 3455556666554444431 11357799999999999999999999753
No 40
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=92.00 E-value=0.29 Score=44.78 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=23.1
Q ss_pred ceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 149 FECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 149 FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
.-.+++||++|+++ ||++|||..|.-
T Consensus 259 ~G~~~ve~~~~~~g-~~viEiN~R~g~ 284 (417)
T 2ip4_A 259 RGVVYAGLMLTREG-PKVLEFNARFGD 284 (417)
T ss_dssp CEEEEEEEEECSSC-EEEEEEESSCCT
T ss_pred eEEEEEEEEEeCCC-eEEEEEecCCCC
Confidence 35688999999999 999999999974
No 41
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=91.87 E-value=0.3 Score=46.85 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEe-CCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIID-NQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD-~~~kpwLLEVN~~P~l~ 176 (258)
..+.++|.+++..++.+.. . --.+++||++| .+++||+||||..|+-.
T Consensus 327 ~~~~~~i~~~a~~~~~alg-----~---~G~~~ve~~~~~~dg~~~~iEiN~R~~g~ 375 (554)
T 1w96_A 327 AETFHEMEKAAVRLGKLVG-----Y---VSAGTVEYLYSHDDGKFYFLELNPRLQVE 375 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHT-----C---CEEEEEEEEECTTTCCEEEEEEECSCCTT
T ss_pred HHHHHHHHHHHHHHHHHcC-----C---cceEEEEEEEECCCCCEEEEEeeCCCCcc
Confidence 3455566666555554431 1 13579999998 88999999999988654
No 42
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=91.67 E-value=0.31 Score=47.45 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
..+.++|.+++.++..+.. +.-..++||++|.++++|+||||..|+-.
T Consensus 337 ~~~~~~i~~~A~~~a~alG--------y~G~~~VEfl~d~dG~~yflEINpRl~~e 384 (587)
T 3jrx_A 337 LAIFEFMEQCAIRLAKTVG--------YVSAGTVEYLYSQDGSFHFLELNPRLQVE 384 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHT--------CCEEEEEEEEECSSSCEEEEEEESSCCTT
T ss_pred HHHHHHHHHHHHHHHHHcC--------CcceeEEEEEEeCCCCEEEEEEeCCCCCc
Confidence 4455666666655555441 12457899999999999999999999753
No 43
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=91.47 E-value=0.24 Score=45.02 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=24.6
Q ss_pred ceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 149 FECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 149 FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
.-++++||++|.++++|++|||..|.-
T Consensus 251 ~G~~~ve~~~~~~g~~~v~EinpR~~~ 277 (377)
T 3orq_A 251 IGTFTVEFFIDSNNQLYVNEIAPRPHN 277 (377)
T ss_dssp CEEEEEEEEEETTCCEEEEEEESSCCG
T ss_pred eEEEEEEEEEeCCCcEEEEEeeCCcCC
Confidence 458999999999999999999999984
No 44
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=91.25 E-value=0.32 Score=45.06 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=23.5
Q ss_pred ceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 149 FECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 149 FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
.-.+++||++|+++ ||+||||..|.-.
T Consensus 286 ~G~~~ve~~~~~~g-~~viEiN~R~g~~ 312 (451)
T 2yrx_A 286 LGVLYAGLMATANG-PKVIEFNARFGDP 312 (451)
T ss_dssp EEEEEEEEEEETTE-EEEEEEESSCCTT
T ss_pred eeEEEEEEEEeCCC-cEEEEEecCCCCc
Confidence 45788999999999 9999999999743
No 45
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=91.21 E-value=0.4 Score=43.37 Aligned_cols=47 Identities=11% Similarity=0.204 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
..+.++|.+++.+++.+.. .. .-.+++||++| +++||+||||..|+-
T Consensus 236 ~~~~~~l~~~a~~~~~~lg-----~~--gg~~~ve~~~~-~~~~~~iEiN~R~~~ 282 (403)
T 4dim_A 236 DDIIEKTKTEVKKAIKALG-----LN--NCAVNVDMILK-DNEVYIIELTGRVGA 282 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHT-----CC--SEEEEEEEEEE-TTEEEEEEEESSCCS
T ss_pred HHHHHHHHHHHHHHHHHcC-----CC--CCcEEEEEEEE-CCcEEEEEEcCCCCC
Confidence 4455666666655555441 11 12468999998 789999999998875
No 46
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=91.20 E-value=0.3 Score=44.71 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=23.1
Q ss_pred ceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 149 FECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 149 FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
.-.+++||++|+++ ||++|||..|.-
T Consensus 265 ~G~~~ve~~~~~~g-~~viEiN~R~g~ 290 (424)
T 2yw2_A 265 RGFLYAGLMITKEG-PKVLEFNVRLGD 290 (424)
T ss_dssp EEEEEEEEEEETTE-EEEEEEESSCCT
T ss_pred eeEEEEEEEEeCCC-cEEEEEecCCCC
Confidence 45788999999999 999999999973
No 47
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=90.75 E-value=0.32 Score=45.13 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=23.2
Q ss_pred eeecceEEEeCCCceEEEEeccCCC
Q psy9339 150 ECYGYDIIIDNQLKPWLIEVNASPS 174 (258)
Q Consensus 150 ellG~DfllD~~~kpwLLEVN~~P~ 174 (258)
-.+.+||++|++++||+||+|..|.
T Consensus 271 G~~~ve~~~~~~g~~~viEiN~R~G 295 (431)
T 3mjf_A 271 GFLYAGLMISADGQPKVIEFNCRFG 295 (431)
T ss_dssp EEEEEEEEECTTSCEEEEEECGGGS
T ss_pred EEEEEEEEEeCCCCeEEEEEecCCC
Confidence 5688999999999999999999997
No 48
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=90.48 E-value=0.48 Score=43.72 Aligned_cols=46 Identities=13% Similarity=0.142 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
..+.+++.+.+.+++.+. . . --.+++||++|+ +.||+||||..|.-
T Consensus 250 ~~~~~~i~~~a~~~~~~l----g--~--~G~~~ve~~~~~-~~~~viEiN~R~~~ 295 (449)
T 2w70_A 250 PELRRYIGERCAKACVDI----G--Y--RGAGTFEFLFEN-GEFYFIEMNTRIQV 295 (449)
T ss_dssp HHHHHHHHHHHHHHHHHH----T--C--CEEEEEEEEEET-TEEEEEEEECSCCT
T ss_pred HHHHHHHHHHHHHHHHHc----C--C--CceEEEEEEEEC-CCEEEEEEECCCCc
Confidence 344555666655555543 1 1 135889999998 89999999999864
No 49
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=89.99 E-value=0.49 Score=43.78 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=23.2
Q ss_pred ceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 149 FECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 149 FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
.-.+++||++|+++ ||++|||..|.-
T Consensus 292 ~G~~~ve~~~~~~g-~~viEiN~R~~~ 317 (452)
T 2qk4_A 292 TGILYAGIMLTKNG-PKVLEFNCRFGD 317 (452)
T ss_dssp CEEEEEEEEEETTE-EEEEEEESSCCT
T ss_pred eeEEEEEEEEeCCC-cEEEEEeccCCC
Confidence 35689999999999 999999999984
No 50
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=89.74 E-value=0.38 Score=45.36 Aligned_cols=46 Identities=17% Similarity=0.110 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeec-ceEEEeCCCceEEEEeccCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYG-YDIIIDNQLKPWLIEVNASPS 174 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG-~DfllD~~~kpwLLEVN~~P~ 174 (258)
....++|.+.+.+++++.. . .-..+ +||++|.++++|+||||..|+
T Consensus 286 ~~~~~~l~~~a~~~~~alG-----~---~g~~~~vef~~~~dg~~~~iEvNpR~~ 332 (474)
T 3vmm_A 286 EEAKKKIVEAAKKANEGLG-----L---QNCATHTEIKLMKNREPGLIESAARFA 332 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHT-----C---CSEEEEEEEEEEGGGEEEEEEEESSCC
T ss_pred HHHHHHHHHHHHHHHHHcC-----C---CCccEEEEEEEcCCCCEEEEEEeCCCC
Confidence 3455566666655555541 1 11233 899999999999999998876
No 51
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=89.51 E-value=0.67 Score=42.07 Aligned_cols=47 Identities=4% Similarity=0.030 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
+.+..++++++.+++.+. .+.-++++||+++++ .+|++|||..|.-+
T Consensus 200 ~~~~~~~~~~a~~i~~aL--------g~~G~~~vEf~~~~~-~~~v~EinpR~~~s 246 (355)
T 3eth_A 200 AQQQARAEEMLSAIMQEL--------GYVGVMAMECFVTPQ-GLLINELAPRVHNS 246 (355)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEEETT-EEEEEEEESSCCGG
T ss_pred HHHHHHHHHHHHHHHHHC--------CCeeEEEEEEEEECC-cEEEEEeeCCCCCC
Confidence 445566666665555443 234689999999974 89999999999864
No 52
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=89.43 E-value=0.23 Score=45.48 Aligned_cols=27 Identities=15% Similarity=0.019 Sum_probs=23.6
Q ss_pred ceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 149 FECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 149 FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
.-.+++||++|+++ ||++|||..|.-.
T Consensus 265 ~G~~~vd~~~~~~g-~~viEiN~R~g~~ 291 (422)
T 2xcl_A 265 TGVLYAGLMLTENG-SKVIEFNARFGDP 291 (422)
T ss_dssp EEEEEEEEEEETTE-EEEEEEESSCCTT
T ss_pred EEEEEeeEEEeCCC-cEEEEEecCCCCc
Confidence 46688999999999 9999999999754
No 53
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=89.20 E-value=0.69 Score=43.01 Aligned_cols=26 Identities=27% Similarity=0.106 Sum_probs=23.1
Q ss_pred ceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 149 FECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 149 FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
.-.+.+||++|+++ ||+||+|..|.-
T Consensus 286 ~G~~~ve~~~~~~g-~~viEiN~R~g~ 311 (442)
T 3lp8_A 286 RGLLFAGIIIKKNE-PKLLEYNVRFGD 311 (442)
T ss_dssp EEEEEEEEEEETTE-EEEEEEESSCCT
T ss_pred eeEEEEEEEEeCCC-eEEEEEecCCCC
Confidence 35788999999998 999999999984
No 54
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=88.86 E-value=0.73 Score=42.68 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
..+.+++.+.+.+++.+.. .. -..++||++|+ +.||+||||..|+.
T Consensus 254 ~~~~~~i~~~a~~~~~~lg-----~~---g~~~ve~~~~~-~~~~viEiN~R~~~ 299 (461)
T 2dzd_A 254 DELRQRICEAAVQLMRSVG-----YV---NAGTVEFLVSG-DEFYFIEVNPRIQV 299 (461)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----CC---EEEEEEEEEET-TEEEEEEEESSCCG
T ss_pred HHHHHHHHHHHHHHHHHcC-----CC---cceEEEEEEeC-CCEEEEEEECCCCC
Confidence 3455556666555554431 11 13579999998 89999999999864
No 55
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=87.21 E-value=0.44 Score=45.25 Aligned_cols=47 Identities=23% Similarity=0.236 Sum_probs=36.2
Q ss_pred ccceeeecccc---CccccCC----ceeeEEEEEEEeeccCcEEEEEcceEEeecccC
Q psy9339 17 IIFKIVNIEEE---DMTVVGG----KKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVK 67 (258)
Q Consensus 17 ~~~~IvQkYI~---~PlLi~g----rKFDiR~yVLvts~~Pl~vyly~~g~vR~a~~~ 67 (258)
...||+|++|. -|.+.+| |++|+|+|++.. + ..++..+|+.|+|..+
T Consensus 400 p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~g--~--~~~v~pGgltRva~~~ 453 (474)
T 3n6x_A 400 PANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSG--K--TVSLVPGALCRVALRE 453 (474)
T ss_dssp GGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEES--S--SEEECSCCEEEEECST
T ss_pred CCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEcC--C--ceEEecceEEEEecCC
Confidence 35699999996 2344454 799999999984 2 3677899999999764
No 56
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=86.72 E-value=0.71 Score=46.24 Aligned_cols=48 Identities=25% Similarity=0.250 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeC--------CCceEEEEeccCCCCC
Q psy9339 120 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDN--------QLKPWLIEVNASPSLT 176 (258)
Q Consensus 120 ~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~--------~~kpwLLEVN~~P~l~ 176 (258)
.+.+-+++++++.++.++. .+.+-|+|+++++ .+...+||||.+|++.
T Consensus 670 td~i~p~~~~~a~~aa~~i---------gl~~~GvDli~~di~~~~~~~~~~~~iiEvN~~pg~~ 725 (750)
T 3ln6_A 670 TNTMDPTYKQLAAEMAEAM---------GAWVCGVDLIIPNATQAYSKDKKNATCIELNFNPLMY 725 (750)
T ss_dssp TTTSCHHHHHHHHHHHHHH---------TCSSCEEEEEESCSSSCCCTTTTCCEEEEEESSCCCH
T ss_pred cccCCHHHHHHHHHHHHHh---------CCCeEEEEEEecCccccccccCCCeEEEEEcCCcchh
Confidence 3456677777765555444 1567899999986 4566899999999994
No 57
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=86.35 E-value=0.69 Score=40.47 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=20.6
Q ss_pred ceeecceEEEeCCCceEEEEeccCCC
Q psy9339 149 FECYGYDIIIDNQLKPWLIEVNASPS 174 (258)
Q Consensus 149 FellG~DfllD~~~kpwLLEVN~~P~ 174 (258)
.-.+++||+ +.+++||++|||..|.
T Consensus 249 ~G~~~vd~~-~~~g~~~~iEiN~R~~ 273 (331)
T 2pn1_A 249 VGPLDFDLF-DVAGTLYLSEINPRFG 273 (331)
T ss_dssp CEEEEEEEE-EETTEEEEEEEESSCC
T ss_pred cceEEEEEE-EcCCCEEEEEEeCCCC
Confidence 457899998 5788999999998744
No 58
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=85.39 E-value=0.53 Score=46.50 Aligned_cols=47 Identities=11% Similarity=0.199 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
..+.++|.+++.+++.+.. ..-.+++||++|+++++|+||||..|+-
T Consensus 275 ~~~~~~l~~~a~~~~~alg--------~~G~~~vEf~~~~dG~~~~iEiNpR~~~ 321 (675)
T 3u9t_A 275 AELRRAMGEAAVRAAQAIG--------YVGAGTVEFLLDERGQFFFMEMNTRLQV 321 (675)
T ss_dssp HHHHHHHHHHHHHHHHHTT--------CCSEEEEECCBCTTSCBCBCEEESSCCT
T ss_pred HHHHHHHHHHHHHHHHHcC--------CccceEEEEEEcCCCCEEEEeccccccC
Confidence 4455666666655555431 1246889999999999999999999975
No 59
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=84.94 E-value=0.72 Score=45.60 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
..+.++|.+.+.+++.+.. .--..++||++|+++++|+||||..|+-.
T Consensus 249 ~~~~~~l~~~a~~~~~alg--------~~G~~~vEf~~d~dg~~~~lEiNpR~~~~ 296 (681)
T 3n6r_A 249 EATRRAMGEQAVALAKAVG--------YASAGTVEFIVDGQKNFYFLEMNTRLQVE 296 (681)
T ss_dssp HHHHHHHHHHHHHHHHTTT--------CCSEEEEEEEECTTSCCCCCEEECSCCTT
T ss_pred HHHHHHHHHHHHHHHHHcC--------CCceEEEEEEEeCCCCEEEEecccccCCC
Confidence 4455666666655444331 11356799999999999999999999754
No 60
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=84.29 E-value=1.5 Score=45.94 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEe-CCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIID-NQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD-~~~kpwLLEVN~~P~l~ 176 (258)
..+.++|.+++..++.+.. . --..++||++| +++++|+||||..|+-.
T Consensus 268 ~~~~~~i~~~a~~i~~alg------~--~G~~~vEf~vd~~dg~~~~iEiNpR~~~~ 316 (1165)
T 2qf7_A 268 EAQRQELAAYSLKIAGATN------Y--IGAGTVEYLMDADTGKFYFIEVNPRIQVE 316 (1165)
T ss_dssp HHHHHHHHHHHHHHHHHTT------C--CEEEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred HHHHHHHHHHHHHHHHHcC------C--CcceeEEEEEECCCCCEEEEEEEcCCCCC
Confidence 3455566666555554431 1 13568999999 88999999999998753
No 61
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=84.09 E-value=1 Score=45.09 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeC--------CCceEEEEeccCCCCC
Q psy9339 120 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDN--------QLKPWLIEVNASPSLT 176 (258)
Q Consensus 120 ~~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~--------~~kpwLLEVN~~P~l~ 176 (258)
.+.+-++.++++..+.++. .+.+-|+|+++++ .+.+.+||||.+|++.
T Consensus 676 td~i~p~~~~~a~~aa~~l---------Gl~~~GvDli~~di~~p~~~~~~~~~iiEvN~~P~~~ 731 (757)
T 3ln7_A 676 TDEMHESYKQLAVGITKAM---------GAAVCGVDLIIPDLKQPATPNLTSWGVIEANFNPMMM 731 (757)
T ss_dssp TTTSCHHHHHHHHHHHHHH---------TCSEEEEEEEESCSSSCCCSSTTTCEEEEEESSCCHH
T ss_pred cccCCHHHHHHHHHHHHHh---------CCCEEEEEEEecCccccccccCCCeEEEEEcCCcchh
Confidence 3456677777765544443 3678999999984 3467899999999984
No 62
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=82.18 E-value=2.1 Score=44.43 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPS 174 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~ 174 (258)
..+.+++.+++.++..+. ++--++++||+++ ++.+|+||||..|+
T Consensus 803 ~~~~~~i~~~a~~i~~aL--------g~~G~~~vdf~v~-~~~~~viEvNpR~~ 847 (1073)
T 1a9x_A 803 QEIQDVMRQQVQKLAFEL--------QVRGLMNVQFAVK-NNEVYLIEVNPRAA 847 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEEC-SSCEEEEEEECSCC
T ss_pred HHHHHHHHHHHHHHHHHc--------CCcceEEEEEEEE-CCeEEEEEEECCCc
Confidence 345556666554444332 2236899999997 78999999999987
No 63
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=80.74 E-value=2 Score=38.14 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.4
Q ss_pred eeecceEEEeCCCceEEEEeccC-CC
Q psy9339 150 ECYGYDIIIDNQLKPWLIEVNAS-PS 174 (258)
Q Consensus 150 ellG~DfllD~~~kpwLLEVN~~-P~ 174 (258)
-.+++||++|+++ ||+||||.. |.
T Consensus 222 G~~~vef~~~~~~-~~viEiN~R~~g 246 (363)
T 4ffl_A 222 GIMDVEAIFGPKG-LRVIEIDARFPS 246 (363)
T ss_dssp EEEEEEEEEETTE-EEEEEEECSCCS
T ss_pred ceeeeeeEEeCCe-EEEEEEeCCCCC
Confidence 4789999999764 999999997 44
No 64
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=79.04 E-value=3.4 Score=42.84 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeC-CCceEEEEeccCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDN-QLKPWLIEVNASPS 174 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~-~~kpwLLEVN~~P~ 174 (258)
+...++|.+.+.+++.+.. . ..-..++||++|. ++++|+||||..|+
T Consensus 258 ~~~~~~l~~~a~~i~~~lg-----~--~~G~~~vdf~~~~~~g~~~viEiNpR~~ 305 (1073)
T 1a9x_A 258 DKEYQIMRNASMAVLREIG-----V--ETGGSNVQFAVNPKNGRLIVIEMNPRVS 305 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHT-----C--CSEEEEEEEEECTTTCCEEEEEEESSCC
T ss_pred HHHHHHHHHHHHHHHHHcC-----c--ccCceEEEEEEECCCCCEEEEEecCCCC
Confidence 4455666666655555541 0 0146889999997 79999999996655
No 65
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=76.47 E-value=3.9 Score=42.83 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 176 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l~ 176 (258)
..+.++|.+.+.+++.+.. +.-..++||++|++ ++|+||||..|+-.
T Consensus 252 ~~~~~~l~~~a~~~~~alG--------~~G~~~vEflvd~d-~~y~iEINpR~~g~ 298 (1150)
T 3hbl_A 252 PTLRQRICDAAIQLMENIK--------YVNAGTVEFLVSGD-EFFFIEVNPRVQVE 298 (1150)
T ss_dssp HHHHHHHHHHHHHHHHHTT--------CCEEEEEEEEEETT-EEEEEEEECSCCTT
T ss_pred HHHHHHHHHHHHHHHHHcC--------CCceEEEEEEEECC-eEEEEEEeCCCCCC
Confidence 3455556666555544431 11356789999998 99999999999743
No 66
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=74.50 E-value=4.5 Score=36.72 Aligned_cols=51 Identities=8% Similarity=0.055 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCCCceEEEEeccCCCC
Q psy9339 123 LFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 175 (258)
Q Consensus 123 i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~~kpwLLEVN~~P~l 175 (258)
+.+++.+++.+.+.+....+. +...-.+++++.++.++++|++|||..|.=
T Consensus 267 ~~~~a~~~a~~v~~al~~~~~--~~~~G~~~vE~fvt~dg~i~V~EIapR~gG 317 (361)
T 2r7k_A 267 LLPQVFEMGDKLVAKAKELVP--PGMIGPFCLQSLCNENLELVVFEMSARVDG 317 (361)
T ss_dssp GHHHHHHHHHHHHHHHHHHST--TCCCEEEEEEEEECTTSCEEEEEEESSBCG
T ss_pred HHHHHHHHHHHHHHHHHhhcc--CCccceEEEEEEEcCCCCEEEEEEcCCCCC
Confidence 344555555555555432221 244678999999999999999999887763
No 67
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=74.22 E-value=5 Score=42.38 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcceeecceEEEeCC-CceEEEEeccCCCC
Q psy9339 121 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQ-LKPWLIEVNASPSL 175 (258)
Q Consensus 121 ~~i~~~Ik~ii~~~l~a~~~~l~~~~~~FellG~DfllD~~-~kpwLLEVN~~P~l 175 (258)
..+.++|.+.+.+++.+.. .--..++||++|.+ +++|+||||..++-
T Consensus 277 ~~~~~~l~~~a~~~~~alg--------~~G~~~VEfivd~d~g~~y~iEINpRl~g 324 (1236)
T 3va7_A 277 EATRAKMRAASERLGSLLK--------YKCAGTVEFIYDEQRDEFYFLEVNARLQV 324 (1236)
T ss_dssp HHHHHHHHHHHHHHHHHTT--------CEEEEEEEEEEETTTTEEEEEEEECSCCT
T ss_pred HHHHHHHHHHHHHHHHHcC--------CcceEEEEEEEECCCCcEEEEEEECCCCC
Confidence 4555666666655544431 12457899999985 99999999998864
No 68
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=73.38 E-value=2.9 Score=35.68 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=17.8
Q ss_pred ccceeeeccccCccccCCceeeEEEEEE
Q psy9339 17 IIFKIVNIEEEDMTVVGGKKFDLRLYVL 44 (258)
Q Consensus 17 ~~~~IvQkYI~~PlLi~grKFDiR~yVL 44 (258)
...+++|+||+.+ +.+|+|++++
T Consensus 192 ~~~~lvqe~i~~~-----~~~~~~v~~~ 214 (316)
T 1gsa_A 192 TRYCMAQNYLPAI-----KDGDKRVLVV 214 (316)
T ss_dssp TSCEEEEECCGGG-----GGCEEEEEEE
T ss_pred CceEEEecccCCC-----CCCCEEEEEE
Confidence 3679999999632 3699999875
No 69
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=49.09 E-value=20 Score=31.84 Aligned_cols=26 Identities=4% Similarity=-0.075 Sum_probs=20.4
Q ss_pred CcceeecceEEEeCCCceEEEEeccCCC
Q psy9339 147 HCFECYGYDIIIDNQLKPWLIEVNASPS 174 (258)
Q Consensus 147 ~~FellG~DfllD~~~kpwLLEVN~~P~ 174 (258)
...-.+++| +++++++|++|||..|.
T Consensus 245 g~~G~~~vE--~~~dg~~~v~EIapR~~ 270 (320)
T 2pbz_A 245 GVIGPFALH--FAYDGSFKAIGIASRID 270 (320)
T ss_dssp CCCSEEEEE--EECSSSCEEEEEESSBC
T ss_pred CceeeEEEE--EcCCCcEEEEEecCCCC
Confidence 335567888 68899999999988754
No 70
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=45.22 E-value=1 Score=35.81 Aligned_cols=17 Identities=53% Similarity=1.081 Sum_probs=11.2
Q ss_pred CCceEEEEeccCCCCCc
Q psy9339 161 QLKPWLIEVNASPSLTC 177 (258)
Q Consensus 161 ~~kpwLLEVN~~P~l~~ 177 (258)
+++|||-|++.+|+-..
T Consensus 105 dl~pwl~ei~~~p~~~~ 121 (144)
T 4e9m_A 105 DLRPWLLEIGFSPSLLT 121 (144)
T ss_dssp GGHHHHHHTTCC-----
T ss_pred chhHHHHHhCCCcHHHh
Confidence 57999999999998753
No 71
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=34.98 E-value=27 Score=32.99 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=23.6
Q ss_pred ceeecceEEEeCCCceEEEEecc-CCCC
Q psy9339 149 FECYGYDIIIDNQLKPWLIEVNA-SPSL 175 (258)
Q Consensus 149 FellG~DfllD~~~kpwLLEVN~-~P~l 175 (258)
-.+.|+|+..|.+|+-|+||-|. .|+=
T Consensus 142 ~~i~~~Dl~r~~dG~~~vlEdn~~~PSG 169 (474)
T 3n6x_A 142 AHIAGVDLVRTGENDFYVLEDNLRTPSG 169 (474)
T ss_dssp CSEEEEEEEECSSSCEEEEEEECSSCCC
T ss_pred EEEEEEEEEECCCCCEEEEEeCCCCCch
Confidence 45889999999999999999999 4663
No 72
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=29.86 E-value=33 Score=30.61 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=16.8
Q ss_pred cceeeeccccCccccCCceeeEEEEEE
Q psy9339 18 IFKIVNIEEEDMTVVGGKKFDLRLYVL 44 (258)
Q Consensus 18 ~~~IvQkYI~~PlLi~grKFDiR~yVL 44 (258)
..++||+||.. +| .|+|+||+
T Consensus 194 ~~~lvQefI~~----~G--~dirv~Vv 214 (346)
T 2q7d_A 194 PPCVVQNFINH----NA--VLYKVFVV 214 (346)
T ss_dssp CCEEEEECCCC----TT--EEEEEEEE
T ss_pred CCEEEEEeeCC----CC--eEEEEEEE
Confidence 46899999964 35 69999996
No 73
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=27.97 E-value=81 Score=22.10 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=26.4
Q ss_pred EEEEeeccCcEEEEEcceEEeecccCCCCC
Q psy9339 42 YVLVTSFRPLKCYLFKLGFCRFCTVKYDKN 71 (258)
Q Consensus 42 yVLvts~~Pl~vyly~~g~vR~a~~~y~~~ 71 (258)
|+.++..+.+-+|+|+.--|-..+.+|...
T Consensus 33 W~~v~H~SGmP~YlH~~trV~T~SrPY~lG 62 (79)
T 3le4_A 33 WIMTFHNSGVPVYLHRESRVVTWSRPYFLG 62 (79)
T ss_dssp EEEEECTTSSEEEEETTTTEEESSCCCCCT
T ss_pred cEEEEecCCceEEEeccceEEeccCCeEec
Confidence 899999889999999998888889999753
Done!