RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9339
(258 letters)
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 206
Score = 35.0 bits (79), Expect = 0.005
Identities = 17/132 (12%), Positives = 32/132 (24%), Gaps = 3/132 (2%)
Query: 59 GFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKD 118
G + + + + T + + +I K+ S G
Sbjct: 63 GMGKVKVENHYDFQDIASVVALTQTYATAEPFIDAKYDIRVQKIGNNYKAYMRTSISGNW 122
Query: 119 ITNKL-FTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTC 177
TN + K + + + K ++ EV
Sbjct: 123 KTNTGSAMLEQIAMSDRYKLWVDACSEMFGGLDICAVKAVHGKDGKDYIFEVMDCSMPLI 182
Query: 178 --TTVNDRILIS 187
V DR LI+
Sbjct: 183 GEHQVEDRQLIT 194
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
ATP-binding domain {Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 31.1 bits (69), Expect = 0.088
Identities = 5/39 (12%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 140 YIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCT 178
+ A + D+ + + EVN + +
Sbjct: 134 SVKAAEAVGGGVVAVDLFESER-GLLVNEVNHTMEFKNS 171
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159
{Deinococcus radiodurans [TaxId: 1299]}
Length = 172
Score = 28.5 bits (63), Expect = 0.50
Identities = 11/59 (18%), Positives = 19/59 (32%)
Query: 177 CTTVNDRILISPAEKLLATADDLYKNLEETVFKLNAELGPKVQEQLAEVVKKAKSSLEE 235
I + A L T ++ A L + Q L E+ + + LE+
Sbjct: 114 DERDRRSASIRLTPQGRALVTHLLPAHLATTQRVLAPLSAQEQRTLEELAGRMLAGLEQ 172
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
Length = 228
Score = 28.5 bits (62), Expect = 0.69
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 147 HCFECYGYDIIIDNQLKPWLIEVNASPSLTCT 178
+ D ++D P+L E N P T
Sbjct: 161 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNM 192
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710
{Thermotoga maritima [TaxId: 2336]}
Length = 139
Score = 28.0 bits (62), Expect = 0.71
Identities = 8/53 (15%), Positives = 23/53 (43%)
Query: 183 RILISPAEKLLATADDLYKNLEETVFKLNAELGPKVQEQLAEVVKKAKSSLEE 235
+ K + + + E + K+ ++LG + ++ + +K+ K +E
Sbjct: 85 AYFLVITRKGEEVIEKVIERRENFIEKITSDLGKEKSSKILDYLKELKGVMER 137
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA
{Salmonella typhimurium [TaxId: 90371]}
Length = 140
Score = 27.7 bits (61), Expect = 0.84
Identities = 9/54 (16%), Positives = 25/54 (46%)
Query: 183 RILISPAEKLLATADDLYKNLEETVFKLNAELGPKVQEQLAEVVKKAKSSLEEM 236
I EK ++ + + +T ++ A + + E L +++ K + ++ E+
Sbjct: 87 AKRIKLTEKAEPLIAEMEEVIHKTRGEILAGISSEEIELLIKLIAKLEHNIMEL 140
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
C-domain {Enterococcus faecium [TaxId: 1352]}
Length = 211
Score = 27.8 bits (60), Expect = 0.97
Identities = 9/68 (13%), Positives = 16/68 (23%), Gaps = 1/68 (1%)
Query: 112 ESTRGKDITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGY-DIIIDNQLKPWLIEVN 170
E +G + + D+ + + + L EVN
Sbjct: 117 EPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDNGRIVLNEVN 176
Query: 171 ASPSLTCT 178
P T
Sbjct: 177 TLPGFTSY 184
>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId:
9606]}
Length = 217
Score = 27.2 bits (60), Expect = 1.6
Identities = 8/51 (15%), Positives = 18/51 (35%)
Query: 190 EKLLATADDLYKNLEETVFKLNAELGPKVQEQLAEVVKKAKSSLEEMKKNL 240
E++ L + E + L + + + KA+ +K +L
Sbjct: 22 EEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHL 72
>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 382
Score = 27.3 bits (60), Expect = 1.8
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 189 AEKLLATA-----DDLYKNLEETV--FKLNAELGPKVQEQLAEVVKKAKSSLEE 235
L ++ ++ + V F LG +QE+L E +K + + E
Sbjct: 16 LATYLQCMQHLVPEEQFRKSQAIVKRFGAPGGLGETLQEKLLERQEKTANWVSE 69
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain
{Escherichia coli, gene ddlB [TaxId: 562]}
Length = 210
Score = 27.0 bits (58), Expect = 2.1
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 155 DIIIDNQLKPWLIEVNASPSLT 176
D+++D+ + +L+E N SP +T
Sbjct: 161 DVMLDSDGQFYLLEANTSPGMT 182
>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine
O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
10090]}
Length = 382
Score = 26.9 bits (59), Expect = 2.3
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 189 AEKLLATA-----DDLYKNLEETVFKLNAELGPKVQEQLAEVVKKAKSSLEEM---KKNL 240
+K L + +D YK EE V K G ++ ++L E + ++ LEE L
Sbjct: 22 LKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYL 81
Query: 241 VDALPVVFESS 251
+P +
Sbjct: 82 DVRIPSQLNVN 92
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus
faecalis [TaxId: 1351]}
Length = 144
Score = 26.2 bits (57), Expect = 2.6
Identities = 8/58 (13%), Positives = 20/58 (34%)
Query: 183 RILISPAEKLLATADDLYKNLEETVFKLNAELGPKVQEQLAEVVKKAKSSLEEMKKNL 240
I EK + + + + L QLA+ + + + ++ E + +
Sbjct: 84 IKRIYATEKGKNVYPIIVRENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDWEFV 141
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 137
Score = 25.8 bits (56), Expect = 4.2
Identities = 7/53 (13%), Positives = 15/53 (28%)
Query: 183 RILISPAEKLLATADDLYKNLEETVFKLNAELGPKVQEQLAEVVKKAKSSLEE 235
I K D+ + + Q +V+ + ++LE
Sbjct: 84 AKHIVLTPKADVLIADIEAIAASVRNDVLTGIDESEQALCQQVLLRILANLEN 136
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO
{Bacillus subtilis [TaxId: 1423]}
Length = 143
Score = 25.7 bits (56), Expect = 4.3
Identities = 7/53 (13%), Positives = 20/53 (37%)
Query: 182 DRILISPAEKLLATADDLYKNLEETVFKLNAELGPKVQEQLAEVVKKAKSSLE 234
I +S ++ +++ + + + + L + Q A + K + E
Sbjct: 89 RVIDLSLTDEGDIKFEEVLAGRKAIMARYLSFLTEEEMLQAAHITAKLAQAAE 141
>d1cfza_ c.56.1.1 (A:) Hydrogenase maturating endopeptidase HybD
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 25.6 bits (56), Expect = 4.6
Identities = 7/59 (11%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 186 ISPAEKLLATADDLYKNLEETV--------FKLNAELGPKVQEQLAEVVKKAKSSLEEM 236
+ A+ +L+ + ++ + + L P V+ + +++ ++L E
Sbjct: 95 LGLAD-VLSALRFTGEFPKKLTLVGVIPESLEPHIGLTPTVEAMIEPALEQVLAALRES 152
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.389
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 940,652
Number of extensions: 43753
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 21
Length of query: 258
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,268,006
Effective search space: 221901050
Effective search space used: 221901050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)