Query psy934
Match_columns 143
No_of_seqs 102 out of 773
Neff 7.1
Searched_HMMs 29240
Date Sat Aug 17 00:48:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t1u_A Choline O-acetyltransfe 100.0 2.4E-40 8.2E-45 288.9 13.9 131 2-135 483-616 (639)
2 1nm8_A Carnitine O-acetyltrans 100.0 3.6E-40 1.2E-44 286.8 14.5 132 2-136 467-601 (616)
3 1xl7_A COT, peroxisomal carnit 100.0 1.9E-39 6.4E-44 282.2 16.0 130 2-135 475-610 (612)
4 2deb_A CPT II, carnitine O-pal 100.0 7.8E-39 2.7E-43 279.8 15.1 132 2-139 519-653 (653)
5 3qwm_A Iqsec1, IQ motif and SE 65.7 11 0.00038 26.5 4.9 45 84-131 81-127 (140)
6 2gjh_A Designed protein; oblig 57.2 11 0.00037 22.1 3.0 29 97-128 2-30 (62)
7 2hjd_A Quorum-sensing antiacti 44.7 31 0.0011 22.9 4.0 24 1-24 24-47 (102)
8 1rfy_A TRAM protein;, transcri 44.7 31 0.0011 22.9 4.0 24 1-24 24-47 (102)
9 2q0o_C Probable transcriptiona 42.3 34 0.0012 22.9 4.0 24 1-24 23-46 (107)
10 1r9f_A Core protein P19; prote 42.1 34 0.0012 23.3 4.0 55 76-142 79-133 (136)
11 3dwa_A SUBB, subtilase cytotox 40.2 42 0.0014 23.1 4.3 53 27-84 54-114 (126)
12 1rpu_A 19 kDa protein; RNAI, p 34.3 59 0.002 23.0 4.3 48 87-141 107-154 (172)
13 1qys_A TOP7; alpha-beta, novel 28.5 47 0.0016 21.2 2.8 30 96-128 45-74 (106)
14 3leq_A Uncharacterized protein 21.5 1.8E+02 0.006 19.3 5.0 49 84-136 76-124 (126)
15 3sjd_D Golgi to ER traffic pro 21.4 68 0.0023 18.1 2.2 12 1-12 14-25 (46)
16 2i9c_A Hypothetical protein RP 20.7 1.5E+02 0.0051 20.2 4.4 54 1-55 9-70 (123)
No 1
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A {Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A 2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Probab=100.00 E-value=2.4e-40 Score=288.91 Aligned_cols=131 Identities=41% Similarity=0.712 Sum_probs=124.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCC-CCcCchhHHhhcCCCCcee--ccCCCCCCCcc
Q psy934 2 KDKKKLDLFDAAIKKQTQIMTENIQGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKLSNEDNDFFF--QEVACKSDSFM 78 (143)
Q Consensus 2 s~~ek~~ll~~A~~~H~~~~~~a~~G~G~DRHL~gL~~~a~~~~~~~-~lF~d~~~~~~~~~~~~~l--S~~~~~~~~~~ 78 (143)
+.+||+++|++|+++|++++++|+.|+|||||||||++++++.|+++ +||.||+|.++++ |.| ||+++.....+
T Consensus 483 ~~~ek~~ll~~A~~~H~~~~~~a~~G~G~DRHL~gL~~~a~~~g~~~P~lF~dp~~~~~~~---~~LSTSq~~~~~~~~~ 559 (639)
T 1t1u_A 483 PASEKLQLLQTAMQAQTEYTVMAITGMAIDNHLLALRELARDLCKEPPEMFMDETYLMSNR---FVLSTSQVPTTMEMFC 559 (639)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCSCCHHHHSHHHHHHTC---CSEEEEECCCSSSEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCCcccccCchhhhhCC---CEEEecCCCCCccccc
Confidence 46899999999999999999999999999999999999999989999 9999999999999 999 56777777789
Q ss_pred ccccccCCCceeeecccCCeEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHHhhcc
Q psy934 79 GYGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESR 135 (143)
Q Consensus 79 gfgp~~~dGyGi~Y~i~~~~i~f~iss~~~~~~t~~~~F~~~L~~al~~m~~ll~~~ 135 (143)
|||||+||||||+|+|.+|+|.|+||+|++|+.|++.+|+++|++||.||++||...
T Consensus 560 gfgPv~~dGyGi~Y~i~~~~i~f~iss~~s~~~t~~~rf~~~L~~al~dm~~ll~~~ 616 (639)
T 1t1u_A 560 CYGPVVPNGYGACYNPQPEAITFCISSFHSCKETSSVEFAEAVGASLVDMRDLCSSR 616 (639)
T ss_dssp ECCCSSTTCEEEEEEECSSCEEEEEEEETTSTTCCHHHHHHHHHHHHHHHHHHHCC-
T ss_pred eEcccCCCceEEEEEEcCCeEEEEEEeCCCCcccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999854
No 2
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains, anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP: c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A* 1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Probab=100.00 E-value=3.6e-40 Score=286.85 Aligned_cols=132 Identities=38% Similarity=0.705 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCC-CCcCchhHHhhcCCCCcee--ccCCCCCCCcc
Q psy934 2 KDKKKLDLFDAAIKKQTQIMTENIQGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKLSNEDNDFFF--QEVACKSDSFM 78 (143)
Q Consensus 2 s~~ek~~ll~~A~~~H~~~~~~a~~G~G~DRHL~gL~~~a~~~~~~~-~lF~d~~~~~~~~~~~~~l--S~~~~~~~~~~ 78 (143)
+.+||+++|++|+++|++++++|+.|+|||||||||++++++.|+++ +||.||+|.++++ |.| ||++......+
T Consensus 467 ~~~ek~~ll~~A~~~H~~~~~~a~~G~G~DRHL~gL~~~a~~~g~~~P~lF~dp~~~~~~~---~~LSTSq~~~~~~~~~ 543 (616)
T 1nm8_A 467 TEHQKVELLRKAVQAHRGYTDRAIRGEAFDRHLLGLKLQAIEDLVSTPDIFMDTSYAIAMH---FHLSTSQVPAKTDCVM 543 (616)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHTTCCCCHHHHSHHHHHHTC---CSEEEEECCCSSSCEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCcccccCchhhhcCC---CEEeecCCCCCccCce
Confidence 46899999999999999999999999999999999999999989999 9999999999999 999 56777778889
Q ss_pred ccccccCCCceeeecccCCeEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHHhhccc
Q psy934 79 GYGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESRK 136 (143)
Q Consensus 79 gfgp~~~dGyGi~Y~i~~~~i~f~iss~~~~~~t~~~~F~~~L~~al~~m~~ll~~~~ 136 (143)
|||||+||||||+|+|.+|+|.|+||+|++|+.|++.+|+++|++||.||++||...+
T Consensus 544 gfgPv~~dGyGi~Y~i~~~~i~f~iss~~s~~~t~~~rf~~~L~~al~dm~~ll~~~~ 601 (616)
T 1nm8_A 544 FFGPVVPDGYGVCYNPMEAHINFSLSAYNSCAETNAARLAHYLEKALLDMRALLQSHP 601 (616)
T ss_dssp ECCCSSTTCEEEEEEECSSCEEEEEEEETTSTTCCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred EEecCCCCeeEEEEEecCCeEEEEEEeCCCCccccHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999998544
No 3
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine, hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3 c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*
Probab=100.00 E-value=1.9e-39 Score=282.20 Aligned_cols=130 Identities=27% Similarity=0.417 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCC-CCcCchhHHh---hcCCCCcee--ccCCCCCC
Q psy934 2 KDKKKLDLFDAAIKKQTQIMTENIQGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKL---SNEDNDFFF--QEVACKSD 75 (143)
Q Consensus 2 s~~ek~~ll~~A~~~H~~~~~~a~~G~G~DRHL~gL~~~a~~~~~~~-~lF~d~~~~~---~~~~~~~~l--S~~~~~~~ 75 (143)
+.+||+++|++|+++|++++++|+.|+|||||||||++++++.|+++ +||.||+|.+ +++ |.| ||+ ....
T Consensus 475 ~~~ek~~ll~~A~~~H~~~~~~a~~G~G~DRHL~gL~~~a~~~g~~~P~lF~d~~~~~sg~~~~---~~LSTS~~-~~~~ 550 (612)
T 1xl7_A 475 SLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGN---FVLSTSLV-GYLR 550 (612)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHTTCCCCGGGTSHHHHHTTTTTC---CSEEEEEC-CSSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcCCCCchhhcChhhhcccCCCC---CEEecCCC-CCCC
Confidence 46899999999999999999999999999999999999999989999 9999999999 777 999 456 4456
Q ss_pred CccccccccCCCceeeecccCCeEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHHhhcc
Q psy934 76 SFMGYGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESR 135 (143)
Q Consensus 76 ~~~gfgp~~~dGyGi~Y~i~~~~i~f~iss~~~~~~t~~~~F~~~L~~al~~m~~ll~~~ 135 (143)
..+|||||+||||||+|+|.+|+|.|+||+|++|+.|++.+|+++|++||.||++||...
T Consensus 551 ~~~gfgPv~~dGyGi~Y~i~~~~i~f~iss~~s~~~t~~~rf~~~L~~al~dm~~ll~~~ 610 (612)
T 1xl7_A 551 VQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTA 610 (612)
T ss_dssp CCCBCCCSSTTCEEEEEEEETTEEEEEEEEETTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEeccCCCeEEEEEEEcCCeEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHHhhc
Confidence 789999999999999999999999999999999999999999999999999999999753
No 4
>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A*
Probab=100.00 E-value=7.8e-39 Score=279.82 Aligned_cols=132 Identities=28% Similarity=0.437 Sum_probs=123.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCC-CCcCchhHHhhcCCCCcee--ccCCCCCCCcc
Q psy934 2 KDKKKLDLFDAAIKKQTQIMTENIQGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKLSNEDNDFFF--QEVACKSDSFM 78 (143)
Q Consensus 2 s~~ek~~ll~~A~~~H~~~~~~a~~G~G~DRHL~gL~~~a~~~~~~~-~lF~d~~~~~~~~~~~~~l--S~~~~~~~~~~ 78 (143)
+.+||+++|++|+++|++++++|+.|+|||||||||++++++.|+++ +||.||+|.++++ |.| ||++......+
T Consensus 519 ~~~ek~~ll~~A~~~H~~~~k~a~~G~G~DRHL~gL~~~a~~~g~~~P~lF~Dp~y~~~~~---~~LSTS~~~~~~~~~~ 595 (653)
T 2deb_A 519 SVGELQHMMAECSKYHGQLTKEAAMGQGFDRHLYALRYLATARGLNLPELYLDPAYQQMNH---NILSTSTLNSPAVSLG 595 (653)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHTTCCCCGGGGSHHHHHHTS---CSEEEEECCCTTEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcCCCCchhhcChhhhhhCC---cEEeecCCCCCccccc
Confidence 46899999999999999999999999999999999999999999999 8999999999999 999 56776667789
Q ss_pred ccccccCCCceeeecccCCeEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHHhhcccccc
Q psy934 79 GYGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESRKIST 139 (143)
Q Consensus 79 gfgp~~~dGyGi~Y~i~~~~i~f~iss~~~~~~t~~~~F~~~L~~al~~m~~ll~~~~~~~ 139 (143)
|||||+||||||+|+|.+|+|.|+||||+ .|++.+|+++|++||.||++||+..++.|
T Consensus 596 gfgPv~~dGyGi~Y~i~~~~i~f~iSs~~---~t~~~~F~~~L~~al~dm~~ll~~~~~~~ 653 (653)
T 2deb_A 596 GFAPVVPDGFGIAYAVHDDWIGCNVSSYS---GRNAREFLHCVQKCLEDIFDALEGKAIKT 653 (653)
T ss_dssp ECCCSSTTCEEEEEEECSSCEEEEEEECT---TSCHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred eeeccCCCceEEEEEecCCeEEEEEEeCC---CCCHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999996 68999999999999999999998776543
No 5
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=65.65 E-value=11 Score=26.50 Aligned_cols=45 Identities=18% Similarity=0.320 Sum_probs=33.5
Q ss_pred cCCCceeeecccC--CeEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHH
Q psy934 84 VPDGYGCSYNPRE--ATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNL 131 (143)
Q Consensus 84 ~~dGyGi~Y~i~~--~~i~f~iss~~~~~~t~~~~F~~~L~~al~~m~~l 131 (143)
+|+|+-|.-+... ....+.+++.. ..+-.+|.+.|+.|..++.++
T Consensus 81 ~p~~~~l~s~~~G~~~k~~i~~~A~s---~~ER~rwi~dL~esI~e~~em 127 (140)
T 3qwm_A 81 YPNGIRLTSSVPGADIKVLINFNAPN---PQDRKKFTDDLRESIAEVQEM 127 (140)
T ss_dssp CTTEEEEEECCTTSCCEEEEEEECSS---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEecCCCCcceEEEEEECCC---HHHHHHHHHHHHHHHHHHHHH
Confidence 7888888666532 45666666642 357889999999999999876
No 6
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=57.22 E-value=11 Score=22.07 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=22.2
Q ss_pred CeEEEEEEeccCCCCCcHHHHHHHHHHHHHHH
Q psy934 97 ATIVFCVSAFKSCLTTSAAKFATSLDESLSAI 128 (143)
Q Consensus 97 ~~i~f~iss~~~~~~t~~~~F~~~L~~al~~m 128 (143)
++++++|++.. ...+++|+..|-+.+.++
T Consensus 2 ervrisitart---kkeaekfaailikvfael 30 (62)
T 2gjh_A 2 ERVRISITART---KKEAEKFAAILIKVFAEL 30 (62)
T ss_dssp CEEEEEEECSS---HHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEecc---hhHHHHHHHHHHHHHHHh
Confidence 57889999863 457999999888776654
No 7
>2hjd_A Quorum-sensing antiactivator; helix coiled coil, signaling protein; 2.10A {Agrobacterium tumefaciens}
Probab=44.66 E-value=31 Score=22.91 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHh
Q psy934 1 MKDKKKLDLFDAAIKKQTQIMTEN 24 (143)
Q Consensus 1 ~s~~ek~~ll~~A~~~H~~~~~~a 24 (143)
|+..+...|=..|++.|..++.++
T Consensus 24 l~~sdlE~LtV~AIr~HRrLl~~a 47 (102)
T 2hjd_A 24 LSSADIETLTANAIRLHRQLLEKA 47 (102)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888899999999998876
No 8
>1rfy_A TRAM protein;, transcriptional repressor TRAM; inter- and intra-molcular two-helix coiled coil, homodimer; 1.60A {Agrobacterium tumefaciens} SCOP: a.2.13.1 PDB: 1us6_A 1upg_A
Probab=44.66 E-value=31 Score=22.91 Aligned_cols=24 Identities=8% Similarity=0.149 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHh
Q psy934 1 MKDKKKLDLFDAAIKKQTQIMTEN 24 (143)
Q Consensus 1 ~s~~ek~~ll~~A~~~H~~~~~~a 24 (143)
|+..+...|=..|++.|..++.++
T Consensus 24 l~~sdlE~LtV~AIr~HRrLl~~a 47 (102)
T 1rfy_A 24 LPPTDLETITIDAIRTHRRLVEKA 47 (102)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888899999999998876
No 9
>2q0o_C Probable transcriptional repressor TRAM; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=42.31 E-value=34 Score=22.90 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHh
Q psy934 1 MKDKKKLDLFDAAIKKQTQIMTEN 24 (143)
Q Consensus 1 ~s~~ek~~ll~~A~~~H~~~~~~a 24 (143)
|+..+...|=..|++.|..++..+
T Consensus 23 l~~seLE~LaI~AIReHRrLv~~a 46 (107)
T 2q0o_C 23 MTKSELEALAVSAIREHRRLLWAD 46 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888889999999988765
No 10
>1r9f_A Core protein P19; protein-RNA complex, dimer, double helix, viral protein/RNA complex; 1.85A {Tomato bushy stunt virus} SCOP: d.255.1.1
Probab=42.05 E-value=34 Score=23.30 Aligned_cols=55 Identities=18% Similarity=0.358 Sum_probs=32.6
Q ss_pred CccccccccCCCceeeecccCCeEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHHhhccccccccc
Q psy934 76 SFMGYGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESRKISTENR 142 (143)
Q Consensus 76 ~~~gfgp~~~dGyGi~Y~i~~~~i~f~iss~~~~~~t~~~~F~~~L~~al~~m~~ll~~~~~~~~~~ 142 (143)
.++|+. -.||.|.|.=-.+.++||.-. ...+ ..++-|.+.-+++|+..+..-+++
T Consensus 79 RF~G~~-----QigCTYSIR~RGvs~T~SGGS----rtLq---~L~eMAiR~K~~~LQ~a~~evE~~ 133 (136)
T 1r9f_A 79 RFFGFD-----QIGCTYSIRFRGVSITVSGGS----RTLQ---HLCEMAIRSKQEMLQMAPIEVESN 133 (136)
T ss_dssp TTCCSS-----CCEEEEEEEETTEEEEEEEEG----GGHH---HHHHHHHHHHHHHHTCC-------
T ss_pred Hhcccc-----ccceeEEEEEeeEEEEEcCCc----HHHH---HHHHHHHHHHHHHhccCcHHhhcc
Confidence 445554 469999999777888888742 2344 445566666777787777665543
No 11
>3dwa_A SUBB, subtilase cytotoxin, subunit B; HET: 1PE; 2.08A {Escherichia coli} PDB: 3dwp_A* 3dwq_A*
Probab=40.22 E-value=42 Score=23.06 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=33.2
Q ss_pred CCChHHHHHHHHHHHHhCCCC--C----CCcCchhHHhhcCCCCcee--ccCCCCCCCcccccccc
Q psy934 27 GEGIDLHLLGLRQTALEHNIP--C----ELFQDEAYKLSNEDNDFFF--QEVACKSDSFMGYGPVV 84 (143)
Q Consensus 27 G~G~DRHL~gL~~~a~~~~~~--~----~lF~d~~~~~~~~~~~~~l--S~~~~~~~~~~gfgp~~ 84 (143)
++|||-+|--.+.--.- |++ + .+++||.|.++.... =++ ++|++ ...||||..
T Consensus 54 ~~~Fd~~~~~A~YyYtT-G~~vrvY~~~nVWtdp~F~~~fS~N-eLv~istCss---~~~C~GP~~ 114 (126)
T 3dwa_A 54 GASFSTLYNQALYFYTT-GQPVRIYYEPGVWTYPPFVKALTSN-ALVGLSTCTT---STECFGPDR 114 (126)
T ss_dssp GGGHHHHHHHHHHHHHH-CCEEEEEEETTCCCCHHHHHHSCSC-EEEEEEEBSS---SSCBSSCCC
T ss_pred cccHHHHHHHhHhhhhc-CCcEEEEEecCcccChhHhhhhccc-ceEEEecccC---CCeeeCCcc
Confidence 46788888766654322 544 2 799999998865411 222 55543 457889973
No 12
>1rpu_A 19 kDa protein; RNAI, protein-RNA complex, RNA double helix, RNA length recognition, RNA binding protein/RNA complex; 2.50A {Carnation italian ringspot virus} SCOP: d.255.1.1
Probab=34.27 E-value=59 Score=22.97 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=32.0
Q ss_pred CceeeecccCCeEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy934 87 GYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESRKISTEN 141 (143)
Q Consensus 87 GyGi~Y~i~~~~i~f~iss~~~~~~t~~~~F~~~L~~al~~m~~ll~~~~~~~~~ 141 (143)
-.||.|.|.=-.+.++||.-. .. +...++-|.+.-+++|+-.+..-++
T Consensus 107 QigCTYSIRfRG~svT~SGGS----rt---Lq~L~eMAiR~K~~~LQltp~evE~ 154 (172)
T 1rpu_A 107 QVGCTYSIRFRGVSVTISGGS----RT---LQHLCEMAIRSKQELLQLTPVEVES 154 (172)
T ss_dssp CCEEEEEEEETTEEEEEEEEG----GG---HHHHHHHHHHHHHHHHTSSCSCC--
T ss_pred ccceeEEEEEeeEEEEecCCc----HH---HHHHHHHHHHHHHHHhccCcHHhhc
Confidence 368999999777888888742 22 4445556777777788776665443
No 13
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=28.45 E-value=47 Score=21.19 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=23.1
Q ss_pred CCeEEEEEEeccCCCCCcHHHHHHHHHHHHHHH
Q psy934 96 EATIVFCVSAFKSCLTTSAAKFATSLDESLSAI 128 (143)
Q Consensus 96 ~~~i~f~iss~~~~~~t~~~~F~~~L~~al~~m 128 (143)
..+++++|+++. ...+++|+..|-..+.++
T Consensus 45 akrvrisitart---kkeaekfaailikvfael 74 (106)
T 1qys_A 45 AKRVRISITART---KKEAEKFAAILIKVFAEL 74 (106)
T ss_dssp CSEEEEEEECSS---HHHHHHHHHHHHHHHHHT
T ss_pred CcEEEEEEEecc---hhHHHHHHHHHHHHHHHh
Confidence 468999999873 457999999888776654
No 14
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=21.45 E-value=1.8e+02 Score=19.31 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=32.2
Q ss_pred cCCCceeeecccCCeEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHHhhccc
Q psy934 84 VPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESRK 136 (143)
Q Consensus 84 ~~dGyGi~Y~i~~~~i~f~iss~~~~~~t~~~~F~~~L~~al~~m~~ll~~~~ 136 (143)
.++||-+-+.+.++.+...++.. ..+.......+++....+.+.|...+
T Consensus 76 ~~~G~l~v~~ag~~a~L~vla~~----~a~lG~v~~em~~~v~ri~~~L~~~~ 124 (126)
T 3leq_A 76 MGKGYLILTAAGPGAHLVVLTRQ----GADVGVVAYQMNMLVKKIGEHLSAPP 124 (126)
T ss_dssp CSSCEEEEEESSTTEEEEEEECT----TCCHHHHHHHHHHHHHHC--------
T ss_pred eCCCEEEEEEeCCCcEEEEEeCC----CCCHHHHHHHHHHHHHHHHHhcCCcC
Confidence 57899999999888665555443 45788888899999999988887654
No 15
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=21.43 E-value=68 Score=18.07 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=8.7
Q ss_pred CCHHHHHHHHHH
Q psy934 1 MKDKKKLDLFDA 12 (143)
Q Consensus 1 ~s~~ek~~ll~~ 12 (143)
++.+||..|+++
T Consensus 14 lsa~EkaRLrRE 25 (46)
T 3sjd_D 14 LTEAEKRRLLRE 25 (46)
T ss_dssp -CHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 356788888886
No 16
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=20.67 E-value=1.5e+02 Score=20.18 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHh----CCC---CC-CCcCchh
Q psy934 1 MKDKKKLDLFDAAIKKQTQIMTENIQGEGIDLHLLGLRQTALE----HNI---PC-ELFQDEA 55 (143)
Q Consensus 1 ~s~~ek~~ll~~A~~~H~~~~~~a~~G~G~DRHL~gL~~~a~~----~~~---~~-~lF~d~~ 55 (143)
|+.++.++.|.++..+|..-+. ..+..-+.||..-|..+..+ .|. .+ .|+.+|-
T Consensus 9 m~v~~Lv~~F~~~~i~q~eA~~-~~d~~~~Nr~~~kl~~~~~eLk~r~Gd~R~aLl~Ll~H~n 70 (123)
T 2i9c_A 9 MTTQDLVALFAKVTVEQDDALL-GNQISRFNRLFGVMAEIADELKARDGDQRTALLSLFEYPN 70 (123)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHSTTCGGGGGGGGGGSSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCC
Confidence 6788999999999999988776 55666689999888755332 132 24 7777764
Done!