RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy934
         (143 letters)



>gnl|CDD|216101 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltransferase. 
          Length = 590

 Score =  127 bits (320), Expect = 5e-35
 Identities = 48/124 (38%), Positives = 66/124 (53%), Gaps = 2/124 (1%)

Query: 3   DKKKLDLFDAAIKKQTQIMTENIQGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKLSNE 61
            ++K  L   A KK  +   E + G+GID HL GL+  A E  +   ELF D ++ LS  
Sbjct: 463 KEEKRQLLKKACKKHVKYTKEAMTGKGIDRHLFGLKLLAKELGVESPELFLDPSWSLSTH 522

Query: 62  DNDFFFQEVACKSDSFMGYGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSL 121
                 Q V  ++D   G+GPVV DGYG  YN     I F +S+F SC  T A +FA  L
Sbjct: 523 FVLSTSQ-VPTETDIGGGFGPVVDDGYGICYNINGDRIHFHISSFHSCPETDADRFAKYL 581

Query: 122 DESL 125
           +++L
Sbjct: 582 EKAL 585


>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.
          Length = 396

 Score = 29.3 bits (66), Expect = 0.68
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 16/62 (25%)

Query: 7   LDLFDAAIKKQTQ-IMTENIQGE-GIDLHLLGLRQTALEHNIPCELFQDEAYKLSNEDND 64
           L+   AAI   T   + E IQGE GI              NIP E F   A +L  E+N 
Sbjct: 176 LEALKAAITPNTAAFLVEPIQGEAGI--------------NIPPEGFLKAARELCKEENV 221

Query: 65  FF 66
            F
Sbjct: 222 LF 223


>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional.
          Length = 395

 Score = 28.9 bits (65), Expect = 0.98
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 6/46 (13%)

Query: 7   LDLFDAAIKKQT-QIMTENIQGEG-----IDLHLLGLRQTALEHNI 46
           +   +  I  +T  +M E +QGEG         +  LR    +H +
Sbjct: 169 IASVEKLITDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGL 214


>gnl|CDD|219991 pfam08728, CRT10, CRT10.  CRT10 is a transcriptional regulator of
           ribonucleotide reductase (RNR) genes. RNR catalyzes the
           rate limiting step in dNTP synthesis. Mutations in CRT10
           have been shown to enhance hydroxyurea resistance.
          Length = 562

 Score = 28.6 bits (64), Expect = 1.3
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 6/32 (18%)

Query: 43  EHNIPCELFQDEAYKLSNEDNDFFFQEVACKS 74
            HNIPC  F      +SN DN F    VAC S
Sbjct: 224 LHNIPCVSF------VSNTDNGFGHITVACAS 249


>gnl|CDD|197517 smart00104, ANATO, Anaphylatoxin homologous domain.  C3a, C4a and
           C5a anaphylatoxins are protein fragments generated
           enzymatically in serum during activation of complement
           molecules C3, C4, and C5. They induce smooth muscle
           contraction. These fragments are homologous to a
           three-fold repeat in fibulins.
          Length = 35

 Score = 25.4 bits (56), Expect = 2.3
 Identities = 7/25 (28%), Positives = 7/25 (28%)

Query: 85  PDGYGCSYNPREATIVFCVSAFKSC 109
           P G  C           C  AF  C
Sbjct: 10  PMGETCEERAARINSGDCRKAFLQC 34


>gnl|CDD|238712 cd01424, MGS_CPS_II, Methylglyoxal synthase-like domain from type
          II glutamine-dependent carbamoyl phosphate synthetase
          (CSP). CSP, a CarA and CarB heterodimer, catalyzes the
          production of carbamoyl phosphate which is subsequently
          employed in the metabolic pathways responsible for the
          synthesis of pyrimidine nucleotides or arginine. The
          MGS-like domain is the C-terminal domain of CarB and
          appears to play a regulatory role in CPS function by
          binding allosteric effector molecules, including UMP
          and ornithine.
          Length = 110

 Score = 26.3 bits (59), Expect = 3.4
 Identities = 5/12 (41%), Positives = 9/12 (75%)

Query: 37 LRQTALEHNIPC 48
          +R+ ALE+ +P 
Sbjct: 87 IRRAALEYKVPY 98


>gnl|CDD|179933 PRK05093, argD, bifunctional
           N-succinyldiaminopimelate-
           aminotransferase/acetylornithine transaminase protein;
           Reviewed.
          Length = 403

 Score = 27.2 bits (61), Expect = 3.5
 Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 18/86 (20%)

Query: 7   LDLFDAAIKKQT-QIMTENIQGEG-----IDLHLLGLRQTALEHNIPCELFQDEAYKLSN 60
           L    A I   T  ++ E IQGEG         L GLR+   +HN    L  DE      
Sbjct: 174 LAAVKAVIDDHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHN--ALLIFDEVQTGMG 231

Query: 61  EDNDFFFQEVACKSDSFMGYGPVVPD 86
              D F         ++M YG V PD
Sbjct: 232 RTGDLF---------AYMHYG-VTPD 247


>gnl|CDD|233196 TIGR00933, 2a38, potassium uptake protein, TrkH family.  The
           proteins of the Trk family are derived from
           Gram-negative and Gram-positive bacteria, yeast and
           wheat. The proteins of E. coli K12 TrkH and TrkG as well
           as several yeast proteins have been functionally
           characterized.The E. coli TrkH and TrkG proteins are
           complexed to two peripheral membrane proteins, TrkA, an
           NAD-binding protein, and TrkE, an ATP-binding protein.
           This complex forms the potassium uptake system
           [Transport and binding proteins, Cations and iron
           carrying compounds].
          Length = 390

 Score = 26.8 bits (60), Expect = 4.8
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 98  TIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNL 131
            ++F +S     L +S   F TSL E +SA G +
Sbjct: 332 ALIFLLSIL--ELISSGYDFLTSLFEVVSAFGTV 363


>gnl|CDD|216663 pfam01723, Chorion_1, Chorion protein.  This family consists of the
           chorion superfamily proteins classes A, B, CA, CB and
           high-cysteine HCB from silk, gypsy and polyphemus moths.
           The chorion proteins make up the moths egg shell a
           complex extracellular structure.
          Length = 176

 Score = 26.0 bits (57), Expect = 7.6
 Identities = 10/35 (28%), Positives = 13/35 (37%)

Query: 79  GYGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTS 113
           GY  +  DG G  +N R    +    A    L  S
Sbjct: 33  GYDGLGYDGLGYGWNGRGCGGLGDDIAAAGALAAS 67


>gnl|CDD|173572 PTZ00380, PTZ00380, microtubule-associated protein (MAP);
           Provisional.
          Length = 121

 Score = 25.5 bits (55), Expect = 9.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 94  PREATIVFCVSAFKSCLTTSAAKFATSLDESLSAI 128
           PR+AT+    +A +  L TSA K   +++ S  A+
Sbjct: 48  PRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAV 82


>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional.
          Length = 389

 Score = 26.0 bits (58), Expect = 9.4
 Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 8/49 (16%)

Query: 12  AAIKKQTQ-IMTENIQGE-GI----DLHLLGLRQTALEHNIPCELFQDE 54
           AAI   T  I+ E IQGE GI    D  L GLRQ   E+ +   L  DE
Sbjct: 170 AAITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGL--LLIFDE 216


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0718    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,835,888
Number of extensions: 580802
Number of successful extensions: 450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 448
Number of HSP's successfully gapped: 18
Length of query: 143
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 56
Effective length of database: 7,078,804
Effective search space: 396413024
Effective search space used: 396413024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)