RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy934
(143 letters)
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A
{Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A
2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Length = 639
Score = 114 bits (285), Expect = 2e-30
Identities = 53/135 (39%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Query: 3 DKKKLDLFDAAIKKQTQIMTENIQGEGIDLHLLGLRQTALEHNIP-CELFQDEAYKLSNE 61
+KL L A++ QT+ I G ID HLL LR+ A + E+F DE Y +SN
Sbjct: 484 ASEKLQLLQTAMQAQTEYTVMAITGMAIDNHLLALRELARDLCKEPPEMFMDETYLMSN- 542
Query: 62 DNDFFFQEVACKSDSFMGYGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSL 121
+V + F YGPVVP+GYG YNP+ I FC+S+F SC TS+ +FA ++
Sbjct: 543 RFVLSTSQVPTTMEMFCCYGPVVPNGYGACYNPQPEAITFCISSFHSCKETSSVEFAEAV 602
Query: 122 DESLSAIGNLVESRK 136
SL + +L SR+
Sbjct: 603 GASLVDMRDLCSSRQ 617
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains,
anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP:
c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A*
1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Length = 616
Score = 113 bits (283), Expect = 3e-30
Identities = 49/133 (36%), Positives = 77/133 (57%), Gaps = 2/133 (1%)
Query: 3 DKKKLDLFDAAIKKQTQIMTENIQGEGIDLHLLGLRQTALEHNIP-CELFQDEAYKLSNE 61
+ +K++L A++ I+GE D HLLGL+ A+E + ++F D +Y ++
Sbjct: 468 EHQKVELLRKAVQAHRGYTDRAIRGEAFDRHLLGLKLQAIEDLVSTPDIFMDTSYAIAM- 526
Query: 62 DNDFFFQEVACKSDSFMGYGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSL 121
+V K+D M +GPVVPDGYG YNP EA I F +SA+ SC T+AA+ A L
Sbjct: 527 HFHLSTSQVPAKTDCVMFFGPVVPDGYGVCYNPMEAHINFSLSAYNSCAETNAARLAHYL 586
Query: 122 DESLSAIGNLVES 134
+++L + L++S
Sbjct: 587 EKALLDMRALLQS 599
>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central
six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus
norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A*
Length = 653
Score = 106 bits (265), Expect = 8e-28
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Query: 3 DKKKLDLFDAAIKKQTQIMTENIQGEGIDLHLLGLRQTALEHNIP-CELFQDEAYKLSNE 61
+ + K Q+ E G+G D HL LR A + EL+ D AY+ N
Sbjct: 520 VGELQHMMAECSKYHGQLTKEAAMGQGFDRHLYALRYLATARGLNLPELYLDPAYQQMNH 579
Query: 62 DNDFFFQEVACKSDSFMGYGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSL 121
+ + + S G+ PVVPDG+G +Y + I VS++ +A +F +
Sbjct: 580 NILSTST-LNSPAVSLGGFAPVVPDGFGIAYAVHDDWIGCNVSSYSG---RNAREFLHCV 635
Query: 122 DESLSAIGNLVESRKIST 139
+ L I + +E + I T
Sbjct: 636 QKCLEDIFDALEGKAIKT 653
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine,
hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3
c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*
Length = 612
Score = 103 bits (258), Expect = 7e-27
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 2/136 (1%)
Query: 4 KKKLDLFDAAIKKQTQIMTENIQGEGIDLHLLGLRQTALEHNIP-CELFQDEAYKLSNED 62
++ A K ++M + G+G D HLLGL A E +P ELF+D + S
Sbjct: 477 LERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGG 536
Query: 63 NDFFFQEVACKSDSFMG-YGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSL 121
+F G P+V +GYG Y+ R+ V S+++SC T A K +
Sbjct: 537 GNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMI 596
Query: 122 DESLSAIGNLVESRKI 137
+ + L+ + +
Sbjct: 597 FHAFHDMIQLMNTAHL 612
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.073
Identities = 26/174 (14%), Positives = 45/174 (25%), Gaps = 66/174 (37%)
Query: 9 LFDAAIKKQTQIMTENI---QGEGIDLHLLGLR------QTALEHNIPCELFQDEAYKL- 58
LF A + Q++ I QG D + LR + +L + A L
Sbjct: 145 LFRAVGEGNAQLVA--IFGGQGN-TDDYFEELRDLYQTYHVLVG-----DLIKFSAETLS 196
Query: 59 ----SNEDNDFFFQEV-----------ACKSDSFMGYGPV-VPDGYG----CSYNPREAT 98
+ D + F + ++ P+ P G Y
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP-LIGVIQLAHY------ 249
Query: 99 IVFC---------VSAFKSCLTT------SAAKFATS------LDESLSAIGNL 131
+V + ++ T +A A + AI L
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Score = 28.1 bits (62), Expect = 1.3
Identities = 22/83 (26%), Positives = 28/83 (33%), Gaps = 22/83 (26%)
Query: 54 EAYKLSNEDNDFFFQEVACKSDSFMGYGPVVPDGYGCSY------NPREATIVFCVSAFK 107
+ YK S Q+V ++D+ D YG S NP TI F K
Sbjct: 1634 DLYKTSKA-----AQDVWNRADNHFK------DTYGFSILDIVINNPVNLTIHF--GGEK 1680
Query: 108 SCLTT---SAAKFATSLDESLSA 127
SA F T +D L
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKT 1703
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 29.8 bits (68), Expect = 0.23
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 7 LDLFDAAIKKQTQ-IMTENIQGEG----IDLH-LLGLRQTALEHNI 46
++ + + + E IQGE L R+ E++
Sbjct: 173 VEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDA 218
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 29.8 bits (68), Expect = 0.29
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 7 LDLFDAAIKKQTQ-IMTENIQGEG----IDLH-LLGLRQTALEHNI 46
+D + ++T I+ E IQGEG L L++ E ++
Sbjct: 162 IDSVYKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDV 207
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 29.4 bits (67), Expect = 0.32
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 7 LDLFDAAIKKQT-QIMTENIQGEG----IDLH-LLGLRQTALEHNI 46
L A + T ++ E IQGEG L GLR EH
Sbjct: 191 LHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQA 236
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 29.0 bits (66), Expect = 0.42
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 7 LDLFDAAIKKQTQ-IMTENIQGEG----IDLH-LLGLRQTALEHNI 46
+ + + ++T I+ E++QGEG + LR+ E +I
Sbjct: 169 ISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDI 214
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 27.7 bits (62), Expect = 1.4
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 18/62 (29%)
Query: 72 CKSDSFMGYGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNL 131
+ G V GY + TS K+ + S + +G L
Sbjct: 107 APDGMYFERGIVGAHGYMSEF------------------FTSPEKYLVRIPRSQAELGFL 148
Query: 132 VE 133
+E
Sbjct: 149 IE 150
>3hl6_A Pathogenicity island protein; unknown functio; 2.50A
{Staphylococcus aureus subsp}
Length = 225
Score = 27.4 bits (60), Expect = 1.9
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 1 MKDKKKLDLFDAAIKKQTQIMTENIQGEGIDLHLLGLRQTALEHNIPCELFQDE------ 54
+KD K F+ A K T+ + +I+G + L +Q ++ + +LF+DE
Sbjct: 59 IKDCKVRQSFELASPKHTEGLIRSIEGHYVGYELHDGKQLSISDMMASQLFEDEYFMYGL 118
Query: 55 -AYKLSNEDNDFFFQEVACKSDSFMG 79
Y SN + F E +D+ G
Sbjct: 119 QTYAESNNSDVFKCLENGFDTDTLEG 144
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 27.1 bits (61), Expect = 2.3
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 7 LDLFDAAIKKQTQ-IMTENIQGE-GI----DLHLLGLRQTALEHNI 46
L+ AAI T + E IQGE GI L + + N+
Sbjct: 172 LEALKAAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENV 217
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 3.8
Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 23/106 (21%)
Query: 5 KKLDLF--DAAIKKQT-QIMTENIQGEGIDLHLLGLRQTAL--EHN------IPCELFQD 53
+L +F A I ++ ++ + + + L + +L + IP ++ +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLE 434
Query: 54 EAYKLSNED-------NDFFFQEVACKSDSFMGYGPVVPDGYGCSY 92
KL NE + + + D P D Y S+
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDD----LIPPYLDQYFYSH 476
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein,
structural genomics, NPPSFA; 1.98A {Homo sapiens}
Length = 143
Score = 25.9 bits (58), Expect = 4.0
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 37 LRQTALEHNIPC 48
+R+TA++ IP
Sbjct: 117 IRRTAVDSGIPL 128
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 26.3 bits (59), Expect = 4.2
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 7 LDLFDAAIKKQTQ-IMTENIQGE-GI----DLHLLGLRQTALEHNI 46
++ A+ ++T ++ E +QGE G+ L R+ E
Sbjct: 175 VEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGA 220
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 25.9 bits (58), Expect = 6.4
Identities = 3/12 (25%), Positives = 9/12 (75%)
Query: 37 LRQTALEHNIPC 48
+R++AL++ +
Sbjct: 1029 IRRSALQYKVHY 1040
>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A
{Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A
Length = 138
Score = 25.2 bits (55), Expect = 7.2
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 83 VVPDGYGCSYNPREA 97
P+G+ +Y P
Sbjct: 94 ECPEGHVVTYTPMAP 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.382
Gapped
Lambda K H
0.267 0.0819 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,018,733
Number of extensions: 107255
Number of successful extensions: 244
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 22
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.6 bits)