RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy934
         (143 letters)



>d1nm8a2 c.43.1.3 (A:386-599) Carnitine acetyltransferase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 214

 Score =  121 bits (305), Expect = 4e-36
 Identities = 49/134 (36%), Positives = 77/134 (57%), Gaps = 2/134 (1%)

Query: 2   KDKKKLDLFDAAIKKQTQIMTENIQGEGIDLHLLGLRQTALEHNIP-CELFQDEAYKLSN 60
            + +K++L   A++         I+GE  D HLLGL+  A+E  +   ++F D +Y ++ 
Sbjct: 82  TEHQKVELLRKAVQAHRGYTDRAIRGEAFDRHLLGLKLQAIEDLVSTPDIFMDTSYAIAM 141

Query: 61  EDNDFFFQEVACKSDSFMGYGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATS 120
                   +V  K+D  M +GPVVPDGYG  YNP EA I F +SA+ SC  T+AA+ A  
Sbjct: 142 -HFHLSTSQVPAKTDCVMFFGPVVPDGYGVCYNPMEAHINFSLSAYNSCAETNAARLAHY 200

Query: 121 LDESLSAIGNLVES 134
           L+++L  +  L++S
Sbjct: 201 LEKALLDMRALLQS 214


>d1t1ua2 c.43.1.3 (A:402-616) Choline O-acetyltransferase {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 215

 Score =  121 bits (305), Expect = 4e-36
 Identities = 54/135 (40%), Positives = 73/135 (54%), Gaps = 2/135 (1%)

Query: 1   MKDKKKLDLFDAAIKKQTQIMTENIQGEGIDLHLLGLRQTALEHNIP-CELFQDEAYKLS 59
           M   +KL L   A++ QT+     I G  ID HLL LR+ A +      E+F DE Y +S
Sbjct: 82  MPASEKLQLLQTAMQAQTEYTVMAITGMAIDNHLLALRELARDLCKEPPEMFMDETYLMS 141

Query: 60  NEDNDFFFQEVACKSDSFMGYGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFAT 119
           N       Q V    + F  YGPVVP+GYG  YNP+   I FC+S+F SC  TS+ +FA 
Sbjct: 142 NRFVLSTSQ-VPTTMEMFCCYGPVVPNGYGACYNPQPEAITFCISSFHSCKETSSVEFAE 200

Query: 120 SLDESLSAIGNLVES 134
           ++  SL  + +L  S
Sbjct: 201 AVGASLVDMRDLCSS 215


>d1xl7a2 c.43.1.3 (A:393-610) Peroxisomal carnitine
           O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 218

 Score =  118 bits (298), Expect = 5e-35
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 2/134 (1%)

Query: 3   DKKKLDLFDAAIKKQTQIMTENIQGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKLSNE 61
             ++      A  K  ++M +   G+G D HLLGL   A E  +P  ELF+D  +  S  
Sbjct: 84  LLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGG 143

Query: 62  DNDFFFQEVACKS-DSFMGYGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATS 120
             +F                 P+V +GYG  Y+ R+   V   S+++SC  T A K    
Sbjct: 144 GGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQM 203

Query: 121 LDESLSAIGNLVES 134
           +  +   +  L+ +
Sbjct: 204 IFHAFHDMIQLMNT 217


>d2gwga1 c.1.9.15 (A:1-342) 4-oxalomesaconate hydratase LigJ
           {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 342

 Score = 27.1 bits (58), Expect = 0.92
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 29  GIDLHLLGLRQTALEHNIPCELFQDEAYKLSNEDNDFFFQEVACKSDSFMGYGPVVP 85
           G DL +   R + + H+I      + +   +   N+  ++      D+F+G   +  
Sbjct: 62  GSDLTVFSPRASFMAHHIGDF---NVSSTWAAICNELCYRVSQLFPDNFIGAAMLPQ 115


>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl
           O-methyltransferase {Thermotoga maritima [TaxId: 2336]}
          Length = 213

 Score = 25.3 bits (54), Expect = 2.9
 Identities = 13/98 (13%), Positives = 27/98 (27%), Gaps = 5/98 (5%)

Query: 21  MTENIQGEGIDLHLLGLRQTALEHNIPCELFQDEAYKLSNEDNDFFFQEVACKSDSFMGY 80
           +   ++  G+  H+      A    IP E F  ++Y LS    D          +     
Sbjct: 5   LFWILKKYGVSDHIA----KAFL-EIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSS 59

Query: 81  GPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFA 118
            P +   +       +   V  +           ++  
Sbjct: 60  QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVV 97


>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A
           (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}
          Length = 217

 Score = 24.6 bits (53), Expect = 5.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 111 TTSAAKFATSLDESLSAIGNLVE 133
           TT A   A ++ E+ S I  LV 
Sbjct: 188 TTPAYMLAQNIAEAASGIDKLVS 210


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0368    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 488,295
Number of extensions: 20399
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 11
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.3 bits)