Query psy9348
Match_columns 308
No_of_seqs 137 out of 604
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 16:47:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2379 GckA Putative glycerat 100.0 2.6E-91 5.6E-96 666.5 31.5 284 2-307 8-294 (422)
2 PF13660 DUF4147: Domain of un 100.0 4.6E-87 9.9E-92 612.7 23.2 238 2-248 1-238 (238)
3 KOG3935|consensus 100.0 1.2E-48 2.6E-53 365.8 17.7 236 53-308 48-284 (446)
4 PRK08674 bifunctional phosphog 85.5 14 0.00031 35.5 12.1 83 124-236 77-159 (337)
5 PF01949 DUF99: Protein of unk 82.5 3.8 8.1E-05 36.9 6.2 120 106-243 43-172 (187)
6 PRK11557 putative DNA-binding 71.3 83 0.0018 29.0 12.1 93 42-189 128-220 (278)
7 PRK10886 DnaA initiator-associ 68.4 72 0.0016 28.7 10.6 53 121-192 105-157 (196)
8 TIGR02584 cas_NE0113 CRISPR-as 67.4 9.7 0.00021 34.9 4.7 45 92-136 77-128 (209)
9 PF03610 EIIA-man: PTS system 66.3 50 0.0011 26.5 8.4 69 44-138 1-70 (116)
10 cd07949 PCA_45_Doxase_B_like_1 63.4 39 0.00085 32.0 8.3 72 101-174 153-225 (276)
11 PF00070 Pyr_redox: Pyridine n 62.6 31 0.00066 25.6 6.1 20 44-63 1-20 (80)
12 PRK00766 hypothetical protein; 62.4 27 0.00059 31.6 6.6 114 108-243 51-177 (194)
13 PF06258 Mito_fiss_Elm1: Mitoc 58.0 68 0.0015 30.9 9.0 105 43-160 57-174 (311)
14 PRK11337 DNA-binding transcrip 56.6 1.7E+02 0.0037 27.2 12.8 93 42-189 140-232 (292)
15 cd05017 SIS_PGI_PMI_1 The memb 55.6 1.1E+02 0.0023 24.6 8.6 22 44-66 1-22 (119)
16 TIGR00736 nifR3_rel_arch TIM-b 52.5 18 0.0004 33.5 3.9 90 112-234 122-214 (231)
17 COG1105 FruK Fructose-1-phosph 52.1 1.3E+02 0.0029 29.2 9.8 100 44-165 52-160 (310)
18 cd00006 PTS_IIA_man PTS_IIA, P 51.2 95 0.0021 25.2 7.7 68 44-138 2-70 (122)
19 PRK13364 protocatechuate 4,5-d 50.3 66 0.0014 30.6 7.4 72 101-174 153-225 (278)
20 PF09587 PGA_cap: Bacterial ca 49.0 56 0.0012 29.9 6.6 48 114-167 171-219 (250)
21 cd01012 YcaC_related YcaC rela 48.4 19 0.00041 30.6 3.2 36 261-296 88-125 (157)
22 COG2515 Acd 1-aminocyclopropan 48.2 31 0.00068 33.6 4.8 51 92-142 147-198 (323)
23 PF15109 TMEM125: TMEM125 prot 47.1 13 0.00029 30.2 1.8 37 150-188 60-98 (112)
24 TIGR00824 EIIA-man PTS system, 46.6 1.5E+02 0.0032 24.2 8.0 68 44-138 3-72 (116)
25 TIGR03642 cas_csx13 CRISPR-ass 45.2 25 0.00054 29.7 3.3 36 103-138 60-102 (124)
26 PF13241 NAD_binding_7: Putati 44.3 26 0.00056 27.8 3.2 35 40-78 4-39 (103)
27 CHL00162 thiG thiamin biosynth 44.2 1.3E+02 0.0028 28.6 8.2 123 30-167 6-140 (267)
28 TIGR03822 AblA_like_2 lysine-2 42.6 90 0.002 30.0 7.2 133 109-290 120-264 (321)
29 PRK14615 4-diphosphocytidyl-2- 41.7 36 0.00077 32.4 4.2 46 115-166 245-290 (296)
30 TIGR00274 N-acetylmuramic acid 41.4 29 0.00063 33.1 3.6 49 122-189 123-171 (291)
31 PRK13365 protocatechuate 4,5-d 40.7 1.1E+02 0.0024 29.0 7.4 73 101-175 154-227 (279)
32 COG1454 EutG Alcohol dehydroge 40.2 94 0.002 31.0 7.0 108 48-176 10-124 (377)
33 cd02201 FtsZ_type1 FtsZ is a G 38.2 1.2E+02 0.0026 28.9 7.2 89 44-138 2-98 (304)
34 TIGR01470 cysG_Nterm siroheme 38.2 30 0.00064 31.2 2.9 33 43-79 10-42 (205)
35 PRK05638 threonine synthase; V 37.8 71 0.0015 32.1 5.9 65 123-187 341-417 (442)
36 PRK13366 protocatechuate 4,5-d 36.7 1.7E+02 0.0037 27.9 7.9 73 101-175 154-227 (284)
37 KOG3857|consensus 36.3 1E+02 0.0022 30.9 6.4 97 48-164 51-153 (465)
38 PRK06719 precorrin-2 dehydroge 36.2 33 0.00073 29.5 2.8 23 41-63 11-34 (157)
39 COG0074 SucD Succinyl-CoA synt 36.2 2.5E+02 0.0054 27.2 8.8 103 40-167 6-119 (293)
40 cd05007 SIS_Etherase N-acetylm 36.1 3.5E+02 0.0075 25.2 9.8 50 121-189 114-163 (257)
41 cd03174 DRE_TIM_metallolyase D 36.0 3.3E+02 0.0071 24.5 11.0 25 146-170 14-38 (265)
42 PHA02591 hypothetical protein; 35.7 54 0.0012 25.7 3.5 38 136-178 36-81 (83)
43 COG3564 Uncharacterized protei 35.2 18 0.0004 29.4 0.9 40 109-148 6-49 (116)
44 PRK06756 flavodoxin; Provision 35.1 1.2E+02 0.0026 25.2 6.0 37 260-296 83-126 (148)
45 PF01488 Shikimate_DH: Shikima 33.6 40 0.00087 28.0 2.8 22 43-64 13-34 (135)
46 PF00289 CPSase_L_chain: Carba 33.3 73 0.0016 25.9 4.2 37 263-299 4-40 (110)
47 COG1611 Predicted Rossmann fol 33.2 61 0.0013 29.5 4.1 51 91-147 14-65 (205)
48 COG3077 RelB DNA-damage-induci 32.1 33 0.00072 27.3 1.9 63 218-288 12-74 (88)
49 PRK06718 precorrin-2 dehydroge 31.8 43 0.00093 30.0 2.9 20 44-63 12-31 (202)
50 cd07950 Gallate_Doxase_N The N 31.0 1.8E+02 0.004 27.4 7.1 71 102-175 155-227 (277)
51 PF13606 Ank_3: Ankyrin repeat 31.0 37 0.00079 20.9 1.6 15 154-168 15-29 (30)
52 PRK13373 putative dioxygenase; 30.4 1.1E+02 0.0025 30.1 5.7 46 94-139 145-192 (344)
53 TIGR02638 lactal_redase lactal 30.4 2.7E+02 0.0058 27.3 8.4 101 50-170 12-120 (379)
54 cd05212 NAD_bind_m-THF_DH_Cycl 29.9 1.8E+02 0.0039 24.7 6.2 51 220-292 10-60 (140)
55 PRK14101 bifunctional glucokin 29.7 6.8E+02 0.015 26.3 12.1 50 120-189 510-559 (638)
56 cd05008 SIS_GlmS_GlmD_1 SIS (S 29.4 2.5E+02 0.0055 22.1 6.9 22 44-66 1-22 (126)
57 PRK06703 flavodoxin; Provision 28.3 1.8E+02 0.0038 24.2 5.9 67 201-289 45-118 (151)
58 TIGR03879 near_KaiC_dom probab 28.0 89 0.0019 23.9 3.6 29 162-190 30-67 (73)
59 COG3660 Predicted nucleoside-d 27.9 4.9E+02 0.011 25.3 9.2 93 44-141 71-175 (329)
60 PRK10696 tRNA 2-thiocytidine b 27.6 45 0.00098 30.8 2.4 19 123-141 26-44 (258)
61 cd01457 vWA_ORF176_type VWA OR 27.1 3.5E+02 0.0076 23.5 7.9 87 107-202 28-117 (199)
62 cd04871 ACT_PSP_2 ACT domains 27.1 1.1E+02 0.0023 23.5 4.0 28 146-173 7-34 (84)
63 cd01461 vWA_interalpha_trypsin 26.9 3.5E+02 0.0077 22.1 7.6 84 111-202 22-109 (171)
64 PF13549 ATP-grasp_5: ATP-gras 26.8 91 0.002 28.6 4.2 40 221-288 11-50 (222)
65 cd04728 ThiG Thiazole synthase 26.6 5.5E+02 0.012 24.2 12.9 122 32-168 1-127 (248)
66 PRK13936 phosphoheptose isomer 26.6 4.5E+02 0.0098 23.2 12.6 35 121-167 107-141 (197)
67 PF13738 Pyr_redox_3: Pyridine 26.5 44 0.00096 28.6 2.0 22 43-64 168-189 (203)
68 PRK13938 phosphoheptose isomer 26.4 4.7E+02 0.01 23.4 8.7 35 121-167 109-143 (196)
69 COG1318 Predicted transcriptio 26.4 88 0.0019 28.0 3.8 49 142-190 36-96 (182)
70 PRK00208 thiG thiazole synthas 26.2 5.6E+02 0.012 24.2 13.6 121 32-168 2-127 (250)
71 cd05014 SIS_Kpsf KpsF-like pro 25.4 3.4E+02 0.0074 21.4 10.3 22 44-66 2-23 (128)
72 TIGR02763 chlamy_scaf chlamydi 25.1 48 0.001 27.3 1.7 32 217-248 28-60 (114)
73 PRK11191 RNase E inhibitor pro 25.1 1.6E+02 0.0036 25.2 5.1 47 240-288 15-61 (138)
74 PF09623 Cas_NE0113: CRISPR-as 24.9 69 0.0015 29.6 3.0 44 93-136 72-122 (224)
75 cd02191 FtsZ FtsZ is a GTPase 24.5 3.8E+02 0.0083 25.6 8.1 82 44-132 2-91 (303)
76 TIGR00315 cdhB CO dehydrogenas 24.5 3.6E+02 0.0079 23.6 7.3 75 43-132 29-107 (162)
77 PRK11302 DNA-binding transcrip 23.9 2.6E+02 0.0057 25.6 6.8 38 121-170 171-208 (284)
78 PRK04964 hypothetical protein; 23.9 85 0.0018 23.5 2.7 38 208-245 13-50 (66)
79 TIGR03127 RuMP_HxlB 6-phospho 23.7 4.6E+02 0.01 22.3 10.8 48 5-65 5-52 (179)
80 TIGR02873 spore_ylxY probable 23.6 3.1E+02 0.0067 25.8 7.2 31 190-234 82-112 (268)
81 PF06877 RraB: Regulator of ri 23.6 1.3E+02 0.0029 23.5 4.1 51 240-292 7-57 (104)
82 TIGR03025 EPS_sugtrans exopoly 23.6 2.8E+02 0.0061 27.6 7.3 99 43-174 126-225 (445)
83 cd07367 CarBb CarBb is the B s 23.1 4.2E+02 0.0091 24.8 8.0 70 102-173 144-216 (268)
84 COG1335 PncA Amidases related 22.8 1.3E+02 0.0029 26.2 4.3 36 261-296 133-170 (205)
85 cd05005 SIS_PHI Hexulose-6-pho 22.8 1.9E+02 0.0041 24.8 5.2 115 3-189 6-120 (179)
86 COG2022 ThiG Uncharacterized e 22.6 5.9E+02 0.013 24.1 8.6 125 29-167 5-133 (262)
87 PF09675 Chlamy_scaf: Chlamydi 22.6 50 0.0011 27.4 1.4 31 218-248 29-60 (114)
88 cd01015 CSHase N-carbamoylsarc 22.6 1.4E+02 0.003 25.7 4.4 36 261-296 114-151 (179)
89 PF03807 F420_oxidored: NADP o 22.6 74 0.0016 24.1 2.3 21 44-64 1-21 (96)
90 PF13580 SIS_2: SIS domain; PD 22.6 2.8E+02 0.0061 22.9 6.1 25 113-138 92-116 (138)
91 PF00023 Ank: Ankyrin repeat H 22.5 66 0.0014 19.7 1.7 16 154-169 15-30 (33)
92 PRK14188 bifunctional 5,10-met 22.3 3.7E+02 0.0079 25.9 7.5 52 219-292 139-190 (296)
93 KOG1257|consensus 22.3 2.2E+02 0.0049 29.9 6.2 23 43-65 311-333 (582)
94 PF09866 DUF2093: Uncharacteri 22.2 1.3E+02 0.0028 20.8 3.1 34 123-166 2-35 (42)
95 PRK13367 protocatechuate 4,5-d 22.0 3.3E+02 0.0071 27.7 7.3 44 101-144 154-198 (420)
96 PRK13937 phosphoheptose isomer 21.9 3.2E+02 0.0069 23.9 6.6 35 121-167 102-136 (188)
97 cd07366 3MGA_Dioxygenase Subun 21.9 1.2E+02 0.0027 29.5 4.2 65 102-174 209-275 (328)
98 PRK13370 mhpB 3-(2,3-dihydroxy 21.9 3.1E+02 0.0068 26.5 7.0 69 102-175 143-212 (313)
99 TIGR01137 cysta_beta cystathio 21.8 4.3E+02 0.0094 26.2 8.2 99 103-234 248-366 (454)
100 TIGR03884 sel_bind_Methan sele 21.4 1.3E+02 0.0028 23.2 3.3 22 268-289 26-47 (74)
101 TIGR00502 nagB glucosamine-6-p 21.1 1E+02 0.0022 28.5 3.4 37 103-139 7-45 (259)
102 TIGR01346 isocit_lyase isocitr 21.0 1.3E+02 0.0029 31.3 4.4 80 153-233 167-274 (527)
103 COG2893 ManX Phosphotransferas 21.0 4.7E+02 0.01 22.4 7.2 67 44-137 3-72 (143)
104 TIGR03614 RutB pyrimidine util 20.9 1.3E+02 0.0028 27.2 4.0 36 261-296 151-188 (226)
105 PF06786 UPF0253: Uncharacteri 20.9 94 0.002 23.3 2.4 38 208-245 13-50 (66)
106 PTZ00318 NADH dehydrogenase-li 20.5 1.7E+02 0.0036 28.9 5.0 67 44-123 175-241 (424)
107 PF10727 Rossmann-like: Rossma 20.5 49 0.0011 27.8 1.0 21 44-64 12-32 (127)
108 TIGR00730 conserved hypothetic 20.4 1.3E+02 0.0029 26.5 3.8 46 93-144 2-48 (178)
No 1
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-91 Score=666.53 Aligned_cols=284 Identities=39% Similarity=0.560 Sum_probs=269.5
Q ss_pred HHHHHHHHHHHHhcChhhHHHhhcccccceeeeecceecccCcEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCc
Q psy9348 2 QEIKLIYEAAVSAVNGQNLIQANVRLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSV 81 (308)
Q Consensus 2 ~~~~~i~~aav~av~P~~~v~~~l~~~~~~L~v~~~~~~l~~~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~ 81 (308)
+.+.++|+++|+++||+++++.+|... +..+|++|||||||+++||++++++| +....|+||+|||+.
T Consensus 8 ~~l~~~~~aav~aadP~r~~~~~lp~~-----------~p~gr~~Vig~GKAs~~MA~a~~~~~-~~~~~GvVVt~~g~~ 75 (422)
T COG2379 8 AFLLELFDAAVAAADPYRALAAHLPVL-----------PPKGRTIVIGAGKASAEMARAFEEHW-KGPLAGVVVTPYGYG 75 (422)
T ss_pred HHHHHHHHHHHHhcCHHHHHHhhCCCC-----------CCCCceEEEecchhHHHHHHHHHHHh-ccccCceEeccCccC
Confidence 467899999999999999999999862 12469999999999999999999999 556789999999987
Q ss_pred cccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHH
Q psy9348 82 GILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLV 161 (308)
Q Consensus 82 ~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll 161 (308)
.+.++++|+|+ +||+||++|+.|+++++++++.++++|+|||||||||||||++|.+||||+|++.+|+.||
T Consensus 76 -------~~~~~ieViea-~HPvPDe~s~~asrrlL~~v~~l~e~D~Vi~LISGGGSaL~e~P~eGitL~d~~avn~~LL 147 (422)
T COG2379 76 -------GPCPRIEVIEA-GHPVPDEASLKASRRLLELVSGLTEDDLVIVLISGGGSALLELPAEGITLEDLIAVNRALL 147 (422)
T ss_pred -------CCCCceeEEeC-CCCCCCchhHHHHHHHHHHhcCCCCCcEEEEEEeCCchhhccCCccCCCHHHHHHHHHHHH
Confidence 45579999997 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHhhcccccchHhhhhcCCeEEEEEEecCCCCCCCccccCcccCCCCCHHHHHHHHHHhCCCccchHH
Q psy9348 162 QSGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKS 241 (308)
Q Consensus 162 ~sGA~I~EiN~VRkhLS~vKGG~La~~~~pa~v~sLilSDV~Gd~l~~IaSGPt~pd~~t~~da~~il~~y~l~~~lp~~ 241 (308)
+|||+|+|||+||||||+|||||||++++|++|++||+|||||||++.||||||+||+||++||++||+||++| +|++
T Consensus 148 ~sGA~I~emNtVRkhLS~VKGGrLA~a~~pA~VvsliiSDVpGDd~~~IASGPTv~D~tt~~DAlavl~ry~i~--~p~~ 225 (422)
T COG2379 148 KSGAPISEMNTVRKHLSRVKGGRLAAAAKPAKVVSLIISDVPGDDPSVIASGPTVPDPTTREDALAVLERYGIA--LPES 225 (422)
T ss_pred HcCCChHHHHHHHHHHhhccchHHHHhcCCCeEEEEEEccCCCCCHhhcccCCCCCCCCchHHHHHHHHHhccc--ccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 9999
Q ss_pred HHHHHcc---CCCCCCCCCCCCeeEEEEechHHHHHHHHHHHHHCCCcEEEcCCCccchHHHHHHHhhc
Q psy9348 242 VMTILSH---ETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDICRGYVD 307 (308)
Q Consensus 242 v~~~L~~---~~~~~~~~~~~~~~~~iig~n~~al~aA~~~A~~~G~~~~il~~~l~Gea~~va~~~a~ 307 (308)
|++||+. ..+++.+++|++++|+||+||..+|+++++.++++||+++||++.++|||||||+++|.
T Consensus 226 v~~~l~~~~~~t~~~~d~~~~~v~~~iIasn~~sleaaa~~~~~~G~~a~Il~d~ieGEArevg~v~as 294 (422)
T COG2379 226 VRAHLESERAETPKPGDERFANVENRIIASNRLSLEAAASEARALGFKAVILGDTIEGEAREVGRVHAS 294 (422)
T ss_pred HHHHHhhhcccCCCCCccccccceeEEEechHHHHHHHHHHHHhcCCeeEEeeccccccHHHHHHHHHH
Confidence 9999995 34677778999999999999999999999999999999999999999999999999975
No 2
>PF13660 DUF4147: Domain of unknown function (DUF4147); PDB: 1X3L_A 2B8N_A.
Probab=100.00 E-value=4.6e-87 Score=612.66 Aligned_cols=238 Identities=44% Similarity=0.649 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHhcChhhHHHhhcccccceeeeecceecccCcEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCc
Q psy9348 2 QEIKLIYEAAVSAVNGQNLIQANVRLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSV 81 (308)
Q Consensus 2 ~~~~~i~~aav~av~P~~~v~~~l~~~~~~L~v~~~~~~l~~~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~ 81 (308)
+++++||++||++++|+++++++++.+++.|. ....++..+++|||||||||++||+++++++|+++.+|+|++|+|+.
T Consensus 1 ~~~~~i~~a~l~av~P~~~v~~~l~~~~~~l~-~~~~~~~~~~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~vv~~~g~~ 79 (238)
T PF13660_consen 1 EDALAIFEAALEAVDPYRAVRRALRLEGNSLI-RQYDLSKYGRIYVVGFGKAAAPMAEAAEEILGDRIVGGLVVVPYGHE 79 (238)
T ss_dssp --HHHHHHHHHHCTSHHHHHHCCCCCHSSEEE-TTEEEE--SSEEEEEESTTHHHHHHHHHHHCGGCEEEEEEEEETT--
T ss_pred ChHHHHHHHHHHHhCHHHHHHHHcCCcccccc-cccccCCCCCEEEEEeCHHHHHHHHHHHHHhcccccCceEEeCCccc
Confidence 57999999999999999999999999999888 44444455699999999999999999999999999999999999986
Q ss_pred cccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHH
Q psy9348 82 GILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLV 161 (308)
Q Consensus 82 ~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll 161 (308)
.+.++++|++| +||+||++|++|+++|++++++++++|+||||||||||||||+|.+||||+||+++|++|+
T Consensus 80 -------~~~~~i~v~~~-~HP~Pd~~s~~aa~~il~~~~~~~~~dlvl~LiSGGgSALl~~P~~gisLed~~~~~~~Ll 151 (238)
T PF13660_consen 80 -------SPLPRIEVLEG-GHPLPDENSVRAARRILELARELTEDDLVLVLISGGGSALLELPADGISLEDKQELTKLLL 151 (238)
T ss_dssp ----------TTSEEEEE--SSS--HHHHHHHHHHHHHHCC--TTSEEEEEE-TTHHHHS--B-TT--HHHHHHHHHHHH
T ss_pred -------CCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCChHHhhcCCCCCCCHHHHHHHHHHHH
Confidence 34569999998 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHhhcccccchHhhhhcCCeEEEEEEecCCCCCCCccccCcccCCCCCHHHHHHHHHHhCCCccchHH
Q psy9348 162 QSGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKS 241 (308)
Q Consensus 162 ~sGA~I~EiN~VRkhLS~vKGG~La~~~~pa~v~sLilSDV~Gd~l~~IaSGPt~pd~~t~~da~~il~~y~l~~~lp~~ 241 (308)
+|||+|+|||+||||||+|||||||++++|+++++||+||||||||++||||||+||++||+||++||+||++|+++|++
T Consensus 152 ~sGa~I~EiN~VRkhLS~vKGG~La~~~~~a~v~sLilSDV~Gd~l~~IaSGPt~pd~st~~da~~il~ky~l~~~lP~s 231 (238)
T PF13660_consen 152 RSGADIHEINTVRKHLSRVKGGRLARAAAPARVVSLILSDVPGDDLSVIASGPTVPDPSTFEDALAILEKYGLWDRLPES 231 (238)
T ss_dssp HCT--HHHHHHHHHTTBSSTTTHHHHCHTTSEEEEEEE--STT--TTTGGG-TTS-----HHHHHHHHHHTT-TTTS-HH
T ss_pred HCCCCHHHHHHHHHHHhcCCchHHHHHhcCCeEEEEEecCCCCCChhhcccCCccCCCCCHHHHHHHHHHcCCcccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcc
Q psy9348 242 VMTILSH 248 (308)
Q Consensus 242 v~~~L~~ 248 (308)
|+++|++
T Consensus 232 V~~~L~~ 238 (238)
T PF13660_consen 232 VRNYLER 238 (238)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999974
No 3
>KOG3935|consensus
Probab=100.00 E-value=1.2e-48 Score=365.84 Aligned_cols=236 Identities=33% Similarity=0.415 Sum_probs=204.2
Q ss_pred hHHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhcCCCCCEEEEE
Q psy9348 53 AVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTKDDVVLVL 132 (308)
Q Consensus 53 Aa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~L 132 (308)
|+.+|+ -....|+....+|.+.+|... ++ .+.. - .+.|+ -+|...+.....++.+.|++...
T Consensus 48 AVL~~~-m~~~~L~~~p~G~ql~vp~kq---Fq---~r~~-~-~lvG~---------~KA~l~~~~~aee~~~q~i~~~~ 109 (446)
T KOG3935|consen 48 AVLGMA-MESFTLTNLPAGGQLTVPLKQ---FQ---SRIS-G-SLVGA---------AKALLYTIFDAEETRPQEICWSG 109 (446)
T ss_pred Hhccch-hhhhhhccCCCCCeeccchhh---hh---cccc-c-hhhhH---------HHHHHHHHHHHHhcchhheeEEE
Confidence 888888 566667776677777776421 10 1110 0 01122 26777777777888888999999
Q ss_pred EeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhcccccchHhhhhcCC-eEEEEEEecCCCCCCCccc
Q psy9348 133 ISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLAEIVYPA-TLVSLIISDIVGDPLQDIA 211 (308)
Q Consensus 133 ISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~vKGG~La~~~~pa-~v~sLilSDV~Gd~l~~Ia 211 (308)
||||||+|+++| +.|||||++++.+|.+.||+|+|+|++|+.+|.+|||+|++.++++ .+++||+|||+|||+++||
T Consensus 110 isg~G~~~~p~p--p~TLe~k~~l~~~l~krGasIqe~n~~ria~s~~kgg~la~~a~~a~~~V~lilSDviGdPvElIA 187 (446)
T KOG3935|consen 110 ISGGGSALLPMP--PRTLEAKIRLEIALCKRGASIQEFNPMRIADSFFKGGCLANVAHMAKCSVALILSDVIGDPVELIA 187 (446)
T ss_pred eecCceeccCCC--CccHHHHHHHHHHHhcCCCchhhhhhHHHHHHHhccchHHhhhhhhcceEEEEehhhcCChhhhee
Confidence 999999999999 9999999999999999999999999999999999999999999998 7899999999999999999
Q ss_pred cCcccCCCCCHHHHHHHHHHhCCCccchHHHHHHHccCCCCCCCCCCCCeeEEEEechHHHHHHHHHHHHHCCCcEEEcC
Q psy9348 212 SGPTVLNEDLWSDARDIVIKYGLQNKVSKSVMTILSHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILS 291 (308)
Q Consensus 212 SGPt~pd~~t~~da~~il~~y~l~~~lp~~v~~~L~~~~~~~~~~~~~~~~~~iig~n~~al~aA~~~A~~~G~~~~il~ 291 (308)
||||+.+.....+++.||++|++|..||.+|+++|++.+.++.+....+..|+|||||-.|+.+|+++|+.+||+++|+|
T Consensus 188 sGPTv~p~h~~~~~~~IL~~~~i~~eLp~~vk~Vle~~e~~~~p~~~~h~~nfiigSNv~Al~~Aa~~ae~lGY~~~Vls 267 (446)
T KOG3935|consen 188 SGPTVIPAHQQDKFINILESLKINLELPVNVKNVLENHEKEQLPENTSHFQNFIIGSNVFALRAAAEYAESLGYNSTVLS 267 (446)
T ss_pred cCCccCchhhcchHHHHHHHcccchhcCHHHHHHHhccccccCCCCccceEEEEecccHHHHHHHHHHHHhcCCccceee
Confidence 99999998889999999999999999999999999997655555566788999999999999999999999999999999
Q ss_pred CCccchHHHHHHHhhcC
Q psy9348 292 SDIEGLGDDICRGYVDL 308 (308)
Q Consensus 292 ~~l~Gea~~va~~~a~~ 308 (308)
+.+|||+.++|++|+.|
T Consensus 268 ~a~qGdva~ia~~y~~l 284 (446)
T KOG3935|consen 268 SALQGDVAEIAKKYAEL 284 (446)
T ss_pred hhhcccHHHHHHHHHHH
Confidence 99999999999999864
No 4
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=85.45 E-value=14 Score=35.55 Aligned_cols=83 Identities=25% Similarity=0.414 Sum_probs=48.7
Q ss_pred CCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhcccccchHhhhhcCCeEEEEEEecCC
Q psy9348 124 TKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIV 203 (308)
Q Consensus 124 ~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~vKGG~La~~~~pa~v~sLilSDV~ 203 (308)
+++|+||+ ||-.|+. ++..+..+...+.|++| ++-..+|.|++.+.......+.+.
T Consensus 77 ~~~dlvI~-iS~SG~T-----------~e~~~a~~~a~~~ga~v---------IaIT~~~~L~~~a~~~~~~~i~ip--- 132 (337)
T PRK08674 77 DEKTLVIA-VSYSGNT-----------EETLSAVEQALKRGAKI---------IAITSGGKLKEMAKEHGLPVIIVP--- 132 (337)
T ss_pred CCCcEEEE-EcCCCCC-----------HHHHHHHHHHHHCCCeE---------EEECCCchHHHHHHhcCCeEEEeC---
Confidence 67776655 6655543 56677777788888743 333346788887754344444443
Q ss_pred CCCCCccccCcccCCCCCHHHHHHHHHHhCCCc
Q psy9348 204 GDPLQDIASGPTVLNEDLWSDARDIVIKYGLQN 236 (308)
Q Consensus 204 Gd~l~~IaSGPt~pd~~t~~da~~il~~y~l~~ 236 (308)
++. +|...-...+.-.+.+|.+.|+.+
T Consensus 133 ~~~------~~r~s~~~ll~~l~~~l~~~Gl~~ 159 (337)
T PRK08674 133 GGY------QPRAALGYLFTPLLKILEKLGLIP 159 (337)
T ss_pred CCC------cchhhHHHHHHHHHHHHHHcCCCc
Confidence 111 333322223556778889888755
No 5
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=82.47 E-value=3.8 Score=36.90 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=66.2
Q ss_pred CHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCCh-----H--HHHHHHHhhc
Q psy9348 106 DEASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANI-----K--ELNKVRKKLS 178 (308)
Q Consensus 106 d~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I-----~--EiN~VRkhLS 178 (308)
.-++..||++|+++++...-.|+=++|++|=.= -|..+-|..++.+.+ |.++ + ++..+++.|-
T Consensus 43 tvdG~DaT~~i~~m~~~~~r~~i~~v~LdGit~-------agFNiiD~~~l~~~t---g~PVI~V~~~~p~~~~i~~AL~ 112 (187)
T PF01949_consen 43 TVDGMDATEAIIEMVKRLFRPDIRVVMLDGITF-------AGFNIIDIERLYEET---GLPVIVVMRKEPNLEGIESALR 112 (187)
T ss_dssp -TT-S-HHHHHHHHHCCTTTTTEEEEEESSSEE-------TTTEE--HHHHHHHH------EEEEESS---HHHHHHCCT
T ss_pred EECCchHHHHHHHHHHhcccCcceEEEECCEeE-------EeeEEecHHHHHHHH---CCCEEEEEEeCCCHHHHHHHHH
Confidence 346789999999999998889999999998322 354555666666554 2222 1 2225555555
Q ss_pred c-cccc--hHhhhhcCCeEEEEEEecCCCCCCCccccCcccCCCCCHHHHHHHHHHhCCCccchHHHH
Q psy9348 179 D-VKGG--QLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSVM 243 (308)
Q Consensus 179 ~-vKGG--~La~~~~pa~v~sLilSDV~Gd~l~~IaSGPt~pd~~t~~da~~il~~y~l~~~lp~~v~ 243 (308)
+ +.+. |+..+-.-....-+.+.+ |.++-+=..| -+.++|.+++++|-+..++|+.+|
T Consensus 113 ~hF~d~~~R~~~i~~~g~~~~v~~~~--~~~vyv~~~G------i~~~~A~~li~~~t~~g~iPEPLR 172 (187)
T PF01949_consen 113 KHFPDWEERLEIIEKLGPREPVSTPT--GGPVYVQSWG------IDLEEARELIRRTTLHGKIPEPLR 172 (187)
T ss_dssp T-STTHHHHHHHHHHC---EEE-------TTEEEEEES------S-HHHHHHHHHHC-SSSSS-HHHH
T ss_pred HhCCCHHHHHHHHHhCCCcEEeeecc--cccEEEEEec------CCHHHHHHHHHHHhccCCCcccHH
Confidence 5 4455 555443223333333333 3333333333 257899999999999999999875
No 6
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=71.27 E-value=83 Score=29.02 Aligned_cols=93 Identities=19% Similarity=0.210 Sum_probs=57.1
Q ss_pred cCcEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHh
Q psy9348 42 KNNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVK 121 (308)
Q Consensus 42 ~~~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~ 121 (308)
.++|||+|.| .+..+|+.+...|.. + |. ++... .|... ....+.
T Consensus 128 a~~I~i~G~G-~s~~~A~~~~~~l~~-~--g~-------------------~~~~~-------~d~~~------~~~~~~ 171 (278)
T PRK11557 128 ARRIILTGIG-ASGLVAQNFAWKLMK-I--GI-------------------NAVAE-------RDMHA------LLATVQ 171 (278)
T ss_pred CCeEEEEecC-hhHHHHHHHHHHHhh-C--CC-------------------eEEEc-------CChHH------HHHHHH
Confidence 3599999999 568899998887631 1 10 11111 22211 123456
Q ss_pred cCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhcccccchHhhhh
Q psy9348 122 HCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLAEIV 189 (308)
Q Consensus 122 ~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~vKGG~La~~~ 189 (308)
.++++|++| .||-.|.. ++..++.+..-+.|++|- .+..-++..+++.+
T Consensus 172 ~~~~~Dv~I-~iS~sg~~-----------~~~~~~~~~ak~~ga~iI-------~IT~~~~s~la~~a 220 (278)
T PRK11557 172 ALSPDDLLL-AISYSGER-----------RELNLAADEALRVGAKVL-------AITGFTPNALQQRA 220 (278)
T ss_pred hCCCCCEEE-EEcCCCCC-----------HHHHHHHHHHHHcCCCEE-------EEcCCCCCchHHhC
Confidence 789999655 55655532 567777788888888774 34555666666654
No 7
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=68.39 E-value=72 Score=28.69 Aligned_cols=53 Identities=30% Similarity=0.446 Sum_probs=36.4
Q ss_pred hcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhcccccchHhhhhcCC
Q psy9348 121 KHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLAEIVYPA 192 (308)
Q Consensus 121 ~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~vKGG~La~~~~pa 192 (308)
...+++|++|+ ||+.|.+ ++..+..+...+.|+++- .++.-.++.|++....+
T Consensus 105 ~~~~~gDvli~-iS~SG~s-----------~~v~~a~~~Ak~~G~~vI-------~IT~~~~s~l~~l~~~~ 157 (196)
T PRK10886 105 ALGHAGDVLLA-ISTRGNS-----------RDIVKAVEAAVTRDMTIV-------ALTGYDGGELAGLLGPQ 157 (196)
T ss_pred HcCCCCCEEEE-EeCCCCC-----------HHHHHHHHHHHHCCCEEE-------EEeCCCCChhhhccccC
Confidence 34477887776 7777663 678888888888888763 45556677777765333
No 8
>TIGR02584 cas_NE0113 CRISPR-associated protein, NE0113 family. Members of this minor CRISPR-associated (Cas) protein family are found in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum.
Probab=67.43 E-value=9.7 Score=34.90 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=35.0
Q ss_pred CceEEEec-CCCCCCCHhh----HHHHHHHHHHHhcCC--CCCEEEEEEeCC
Q psy9348 92 SEIEIREC-ARNNLPDEAS----CQNTQLIQNFVKHCT--KDDVVLVLISGG 136 (308)
Q Consensus 92 ~~i~v~eg-a~HP~Pd~~s----~~Aa~~il~~~~~~~--~~Dlvl~LISGG 136 (308)
.+|.+++. .+-|++|-.+ -.|++-|.+.+.+++ ++..|.|.||||
T Consensus 77 ~~i~~i~~~~g~~l~Dirt~~dn~~aa~~I~~~v~~Lt~d~~~~lH~sIAGG 128 (209)
T TIGR02584 77 LRIYLIPTGQRKPLADIRTPADNEAAANFIVQTVAPLCAAQDHQLHASIAGG 128 (209)
T ss_pred ceEEEecCCCCCCccccCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEecCc
Confidence 35667753 2248888776 688899999999997 556999999999
No 9
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=66.35 E-value=50 Score=26.54 Aligned_cols=69 Identities=23% Similarity=0.385 Sum_probs=49.2
Q ss_pred cEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhcC
Q psy9348 44 NVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHC 123 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~ 123 (308)
+++|++=|.-|.+|.+.++.++|+.. .++..+..- ||+..-+--+++.+.+++.
T Consensus 1 giii~sHG~~A~g~~~~~~~i~G~~~----------------------~~i~~~~~~----~~~~~~~~~~~l~~~i~~~ 54 (116)
T PF03610_consen 1 GIIIASHGSLAEGLLESAEMILGEDQ----------------------DNIEAVDLY----PDESIEDFEEKLEEAIEEL 54 (116)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHTSTC----------------------SSEEEEEET----TTSCHHHHHHHHHHHHHHC
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCc----------------------ccEEEEECc----CCCCHHHHHHHHHHHHHhc
Confidence 37889999999999999999998620 245555431 4444445667888999999
Q ss_pred CCCCEEEEEE-eCCcc
Q psy9348 124 TKDDVVLVLI-SGGGS 138 (308)
Q Consensus 124 ~~~Dlvl~LI-SGGgS 138 (308)
.++|-+|+|. -+|||
T Consensus 55 ~~~~~vlil~Dl~ggs 70 (116)
T PF03610_consen 55 DEGDGVLILTDLGGGS 70 (116)
T ss_dssp CTTSEEEEEESSTTSH
T ss_pred cCCCcEEEEeeCCCCc
Confidence 8777777773 45555
No 10
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=63.42 E-value=39 Score=32.00 Aligned_cols=72 Identities=22% Similarity=0.156 Sum_probs=51.2
Q ss_pred CCCCCC-HhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHH
Q psy9348 101 RNNLPD-EASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVR 174 (308)
Q Consensus 101 ~HP~Pd-~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VR 174 (308)
.+|+|+ +...+=++.|-+++++.+.+.-|+++-|||-|==|..|..|..=++.-+..-..++ | +..++-.+-
T Consensus 153 ~~p~~~~~~~~~lG~al~~~i~~~~~d~rv~iiaSG~lSH~l~~~~~g~~~~~fD~~~~~~l~-~-d~~~L~~~~ 225 (276)
T cd07949 153 QHPLPSPKRCFKLGQAIGRAIESYPEDLRVVVLGTGGLSHQLDGERAGFINKDFDRYCLDKMV-D-NPEWLTKYS 225 (276)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCCCcccchHHHHHHHHHHHh-c-CHHHHHcCC
Confidence 388999 78899999999999998888889999999999888766444222444444444444 3 555554433
No 11
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=62.56 E-value=31 Score=25.63 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=18.2
Q ss_pred cEEEEEechhHHHHHHHHHH
Q psy9348 44 NVYLIGFGKAVLGMAVEIEA 63 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~ 63 (308)
++.|||.|-.++.||..+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~ 20 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE 20 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 58899999999999999965
No 12
>PRK00766 hypothetical protein; Provisional
Probab=62.43 E-value=27 Score=31.63 Aligned_cols=114 Identities=15% Similarity=0.185 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHhcC-CCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHH-------HhCCCChHH-HHHHHHhhc
Q psy9348 108 ASCQNTQLIQNFVKHC-TKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLL-------VQSGANIKE-LNKVRKKLS 178 (308)
Q Consensus 108 ~s~~Aa~~il~~~~~~-~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~L-------l~sGA~I~E-iN~VRkhLS 178 (308)
++..||++|.+++.+. -..|+=++|++|=.= -|...-|..++.+.+ +++-=+.+. -+++|||++
T Consensus 51 dG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~-------agFNvvD~~~l~~~tg~PVI~V~r~~p~~~~ie~AL~k~f~ 123 (194)
T PRK00766 51 DGLDATEAIIEMVNSSRHKGQLRVIMLDGITY-------GGFNVVDIEELYRETGLPVIVVMRKKPDFEAIESALKKHFS 123 (194)
T ss_pred CCccHHHHHHHHHHhcccccceEEEEECCEee-------eeeEEecHHHHHHHHCCCEEEEEecCCCHHHHHHHHHHHCC
Confidence 4679999999999884 446999999988322 244445555555554 222223233 257777776
Q ss_pred ccccchHhh--hhcCCeEEEEEEecCCCCCCCccccCcccC--CCCCHHHHHHHHHHhCCCccchHHHH
Q psy9348 179 DVKGGQLAE--IVYPATLVSLIISDIVGDPLQDIASGPTVL--NEDLWSDARDIVIKYGLQNKVSKSVM 243 (308)
Q Consensus 179 ~vKGG~La~--~~~pa~v~sLilSDV~Gd~l~~IaSGPt~p--d~~t~~da~~il~~y~l~~~lp~~v~ 243 (308)
.=.- |+.. .+.+ ...+... +|.+- -.-+.++|.++++++-...++|+.++
T Consensus 124 ~~~~-R~~~~~~~g~--~~~~~~~------------~~vyvs~~gi~l~~A~~lv~~~~~~~riPEPlR 177 (194)
T PRK00766 124 DWEE-RIKLIKKAGK--IVELITR------------GPLYIQAAGIDPETAAEIVRLTSTRSLIPEPLR 177 (194)
T ss_pred CHHH-HHHHHHhCCC--ceEeccC------------CCEEEEEcCCCHHHHHHHHHHhccCCCCchhhH
Confidence 5221 3332 2322 2222111 33221 12368999999999998888998765
No 13
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=58.03 E-value=68 Score=30.90 Aligned_cols=105 Identities=17% Similarity=0.118 Sum_probs=71.6
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcccccc-------------eEEEecCCCccccCCCCCCCCceEEEecCCCCCCCHhh
Q psy9348 43 NNVYLIGFGKAVLGMAVEIEAMFRPQRLK-------------GILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEAS 109 (308)
Q Consensus 43 ~~i~vvg~GKAa~~MA~a~~~~lg~~i~~-------------G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~~s 109 (308)
.+-+|||.|..+..-+..+.+..|.+... -+||+|..... +..+|+-...|+-|++-.+.-
T Consensus 57 ~pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~i~~P~~~~~~FDlvi~p~HD~~------~~~~Nvl~t~ga~~~i~~~~l 130 (311)
T PF06258_consen 57 WPDLIISAGRRTAPAALALRRASGGRTKTVQIMDPRLPPRPFDLVIVPEHDRL------PRGPNVLPTLGAPNRITPERL 130 (311)
T ss_pred CCcEEEECCCchHHHHHHHHHHcCCCceEEEEcCCCCCccccCEEEECcccCc------CCCCceEecccCCCcCCHHHH
Confidence 47889999999999999999999874211 35556543321 234677777788899888888
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHH
Q psy9348 110 CQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLL 160 (308)
Q Consensus 110 ~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~L 160 (308)
.+++++..+.+..+ +...+.||| ||-|.-+ .++-++..++.+.|
T Consensus 131 ~~a~~~~~~~~~~l-~~p~~avLI-GG~s~~~-----~~~~~~~~~l~~~l 174 (311)
T PF06258_consen 131 AEAAAAWAPRLAAL-PRPRVAVLI-GGDSKHY-----RWDEEDAERLLDQL 174 (311)
T ss_pred HHHHHhhhhhhccC-CCCeEEEEE-CcCCCCc-----ccCHHHHHHHHHHH
Confidence 88888888877764 456666665 5555544 35556555555443
No 14
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=56.60 E-value=1.7e+02 Score=27.21 Aligned_cols=93 Identities=22% Similarity=0.312 Sum_probs=55.7
Q ss_pred cCcEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHh
Q psy9348 42 KNNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVK 121 (308)
Q Consensus 42 ~~~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~ 121 (308)
.++|+++|.| .+..+|..+...+- ++ |+ ++.++ +|..... ....
T Consensus 140 A~~I~i~G~G-~S~~~A~~l~~~l~-~~--g~-------------------~~~~~-------~d~~~~~------~~~~ 183 (292)
T PRK11337 140 ARQRDLYGAG-GSAAIARDVQHKFL-RI--GV-------------------RCQAY-------DDAHIML------MSAA 183 (292)
T ss_pred CCeEEEEEec-HHHHHHHHHHHHHh-hC--CC-------------------eEEEc-------CCHHHHH------HHHh
Confidence 3589999999 56778888776552 11 11 11111 2222111 1124
Q ss_pred cCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhcccccchHhhhh
Q psy9348 122 HCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLAEIV 189 (308)
Q Consensus 122 ~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~vKGG~La~~~ 189 (308)
.++++|++|+ ||-.|.. .+..++.+..-+.|++|- -+..-.++.|++.+
T Consensus 184 ~~~~~Dl~I~-iS~sG~t-----------~~~~~~~~~ak~~g~~ii-------~IT~~~~s~la~~a 232 (292)
T PRK11337 184 LLQEGDVVLV-VSHSGRT-----------SDVIEAVELAKKNGAKII-------CITNSYHSPIAKLA 232 (292)
T ss_pred cCCCCCEEEE-EeCCCCC-----------HHHHHHHHHHHHCCCeEE-------EEeCCCCChhHHhC
Confidence 5788998755 7766543 456777788888888774 34555667777654
No 15
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=55.59 E-value=1.1e+02 Score=24.62 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=16.3
Q ss_pred cEEEEEechhHHHHHHHHHHHhc
Q psy9348 44 NVYLIGFGKAVLGMAVEIEAMFR 66 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~~lg 66 (308)
+||++|.| .+...|+.+...+.
T Consensus 1 ~I~i~G~G-~S~~~a~~~~~~l~ 22 (119)
T cd05017 1 NIVILGMG-GSGIGGDLLESLLL 22 (119)
T ss_pred CEEEEEcC-HHHHHHHHHHHHHH
Confidence 58999999 55567777776653
No 16
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=52.51 E-value=18 Score=33.49 Aligned_cols=90 Identities=17% Similarity=0.133 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhcccccch--H-hhh
Q psy9348 112 NTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQ--L-AEI 188 (308)
Q Consensus 112 Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~vKGG~--L-a~~ 188 (308)
-..++++.+++. +-.|.+=|+-|. +-++..++.+.|.++|++.- |+...+.|. . .++
T Consensus 122 ~l~~iv~av~~~--~~PVsvKiR~~~-----------~~~~~~~~a~~l~~aGad~i-------~Vd~~~~g~~~a~~~~ 181 (231)
T TIGR00736 122 LLKEFLTKMKEL--NKPIFVKIRGNC-----------IPLDELIDALNLVDDGFDGI-------HVDAMYPGKPYADMDL 181 (231)
T ss_pred HHHHHHHHHHcC--CCcEEEEeCCCC-----------CcchHHHHHHHHHHcCCCEE-------EEeeCCCCCchhhHHH
Confidence 345555555533 345666666553 33567789999999999954 223333343 1 111
Q ss_pred hcCCeEEEEEEecCCCCCCCccccCcccCCCCCHHHHHHHHHHhCC
Q psy9348 189 VYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGL 234 (308)
Q Consensus 189 ~~pa~v~sLilSDV~Gd~l~~IaSGPt~pd~~t~~da~~il~~y~l 234 (308)
.+.- ++-+ +++-+||+| +-.|++||.+.++ ||-
T Consensus 182 I~~i-------~~~~-~~ipIIgNG----gI~s~eda~e~l~-~GA 214 (231)
T TIGR00736 182 LKIL-------SEEF-NDKIIIGNN----SIDDIESAKEMLK-AGA 214 (231)
T ss_pred HHHH-------HHhc-CCCcEEEEC----CcCCHHHHHHHHH-hCC
Confidence 1110 1111 124489999 5678999999998 875
No 17
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=52.09 E-value=1.3e+02 Score=29.23 Aligned_cols=100 Identities=22% Similarity=0.222 Sum_probs=60.8
Q ss_pred cEEEEEechhHHHHHHHHHHHhccc-ccceEEEecCCCccccCCCCCCCCceEEEecCC-------CCCCCHhhHHHHHH
Q psy9348 44 NVYLIGFGKAVLGMAVEIEAMFRPQ-RLKGILSVPFGSVGILKPQFNKNSEIEIRECAR-------NNLPDEASCQNTQL 115 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~~lg~~-i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~-------HP~Pd~~s~~Aa~~ 115 (308)
+....|| +...+-+-+++.|.+. +...++-++..++ .++++.++.. -|=| +-+.+--++
T Consensus 52 ~~~a~Gf--lGg~tg~~~~~~l~~~gi~~~fv~v~g~TR----------invki~~~~~~~~Tein~~Gp-~is~~~~~~ 118 (310)
T COG1105 52 PVTALGF--LGGFTGEFFVALLKDEGIPDAFVEVKGDTR----------INVKILDEEDGEETEINFPGP-EISEAELEQ 118 (310)
T ss_pred CceEEEe--cCCccHHHHHHHHHhcCCCceEEEccCCCe----------eeEEEEecCCCcEEEecCCCC-CCCHHHHHH
Confidence 4444443 3334444455555443 6667777765443 3566666421 0112 234445567
Q ss_pred HHHHHhc-CCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCC
Q psy9348 116 IQNFVKH-CTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGA 165 (308)
Q Consensus 116 il~~~~~-~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA 165 (308)
+++.++. +.++|. |.+|| ++| ++++-+...++.+.+-+.|+
T Consensus 119 ~l~~~~~~l~~~d~--VvlsG------SlP-~g~~~d~y~~li~~~~~~g~ 160 (310)
T COG1105 119 FLEQLKALLESDDI--VVLSG------SLP-PGVPPDAYAELIRILRQQGA 160 (310)
T ss_pred HHHHHHHhcccCCE--EEEeC------CCC-CCCCHHHHHHHHHHHHhcCC
Confidence 7777777 889998 66777 356 79999999999888776654
No 18
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=51.18 E-value=95 Score=25.19 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=44.6
Q ss_pred cEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhcC
Q psy9348 44 NVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHC 123 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~ 123 (308)
+++|++=|+-|.+|.+++..++|+. .++..+... ||..--+-.+++.+++++.
T Consensus 2 ~ili~sHG~~A~gi~~~~~~i~G~~-----------------------~~i~~~~~~----~~~~~~~~~~~i~~~i~~~ 54 (122)
T cd00006 2 GIIIATHGGFASGLLNSAEMILGEQ-----------------------ENVEAIDFP----PGESPDDLLEKIKAALAEL 54 (122)
T ss_pred eEEEEcCHHHHHHHHHHHHHhcCCC-----------------------CCeEEEEeC----CCCCHHHHHHHHHHHHHHh
Confidence 4788999999999999999998754 134445432 3333345567778888888
Q ss_pred CCCCEEEEEEe-CCcc
Q psy9348 124 TKDDVVLVLIS-GGGS 138 (308)
Q Consensus 124 ~~~Dlvl~LIS-GGgS 138 (308)
..+|-+|+|.= -|||
T Consensus 55 ~~~~~viil~Dl~GGS 70 (122)
T cd00006 55 DSGEGVLILTDLFGGS 70 (122)
T ss_pred CCCCcEEEEEeCCCCC
Confidence 76555555542 2444
No 19
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=50.31 E-value=66 Score=30.59 Aligned_cols=72 Identities=19% Similarity=0.146 Sum_probs=52.0
Q ss_pred CCCCC-CHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHH
Q psy9348 101 RNNLP-DEASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVR 174 (308)
Q Consensus 101 ~HP~P-d~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VR 174 (308)
.+|+| -+...+=++.|-+++++.+.+.-|+++-|||-|==|.-+..|..=++.-+..-.++++ +..++-..-
T Consensus 153 ~~p~~~~~r~~~lG~al~~~i~~~~~d~rV~iIaSG~LSH~l~~~p~G~~~~~fD~~~l~~l~~--d~~~l~~~~ 225 (278)
T PRK13364 153 QHPLPSARRCYKLGQAIGRAIASWPSDERVVVIGTGGLSHQLDGERAGFINKDFDLQCMDSLVS--DPEWLTQYS 225 (278)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCCCCCcccCCHHHHHHHHHHHHh--CHHHHHcCC
Confidence 46888 5677899999999999877777899999999998777666663335554444444443 666665554
No 20
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=49.00 E-value=56 Score=29.91 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=36.1
Q ss_pred HHHHHHHhcCC-CCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCCh
Q psy9348 114 QLIQNFVKHCT-KDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANI 167 (308)
Q Consensus 114 ~~il~~~~~~~-~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I 167 (308)
+++.+.++++. +.|+|||.+-.|.. -..-+.++.+++.+.|..+||||
T Consensus 171 ~~i~~~i~~~r~~~D~vIv~~HwG~e------~~~~p~~~q~~~a~~lidaGaDi 219 (250)
T PF09587_consen 171 ERIKEDIREARKKADVVIVSLHWGIE------YENYPTPEQRELARALIDAGADI 219 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEEeccCCC------CCCCCCHHHHHHHHHHHHcCCCE
Confidence 55555555554 68999999999855 22333588899999999999986
No 21
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=48.37 E-value=19 Score=30.56 Aligned_cols=36 Identities=6% Similarity=0.207 Sum_probs=26.3
Q ss_pred eeEEEEec--hHHHHHHHHHHHHHCCCcEEEcCCCccc
Q psy9348 261 VHNHIIGN--NRAALLGAKWKAESLGFQTVILSSDIEG 296 (308)
Q Consensus 261 ~~~~iig~--n~~al~aA~~~A~~~G~~~~il~~~l~G 296 (308)
+++.+|.. ....+..-+..|..+||++++++++..+
T Consensus 88 i~~lii~G~~T~~CV~~Ta~~a~~~g~~v~v~~Da~as 125 (157)
T cd01012 88 RKQVVLAGLETHVCVLQTALDLLEEGYEVFVVADACGS 125 (157)
T ss_pred CCEEEEEEeeccHHHHHHHHHHHHCCCEEEEEeeCCCC
Confidence 44445544 3456677788888999999999888766
No 22
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=48.16 E-value=31 Score=33.56 Aligned_cols=51 Identities=24% Similarity=0.111 Sum_probs=37.5
Q ss_pred CceEEEecCCCCCCCHhhHHHHHHHHHHHhcCC-CCCEEEEEEeCCcccccc
Q psy9348 92 SEIEIRECARNNLPDEASCQNTQLIQNFVKHCT-KDDVVLVLISGGGSACLS 142 (308)
Q Consensus 92 ~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~~-~~Dlvl~LISGGgSALl~ 142 (308)
+..-+-+|++||+=.-.-++.+.+|.+.++++. -|-+|++--|||.+|.+.
T Consensus 147 kpyvIp~GG~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~ 198 (323)
T COG2515 147 KPYVIPEGGSSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLL 198 (323)
T ss_pred CCcEeccCCcCccccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHH
Confidence 456667777799999999999999999999854 444555555555566543
No 23
>PF15109 TMEM125: TMEM125 protein family
Probab=47.12 E-value=13 Score=30.16 Aligned_cols=37 Identities=27% Similarity=0.405 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHH--HhhcccccchHhhh
Q psy9348 150 LEDKLKTIKLLVQSGANIKELNKVR--KKLSDVKGGQLAEI 188 (308)
Q Consensus 150 Ledk~~~~~~Ll~sGA~I~EiN~VR--khLS~vKGG~La~~ 188 (308)
|-.+.-+-++|+.| .||.||+|| +|+..+|-|+.+-.
T Consensus 60 LLAL~vLlKQLLSS--AvQDMnCir~r~~i~~LkSGG~~D~ 98 (112)
T PF15109_consen 60 LLALLVLLKQLLSS--AVQDMNCIRSRRRIDLLKSGGGADP 98 (112)
T ss_pred HHHHHHHHHHHHHH--HHhhhhhhccHHHHHHHhcCCCcch
Confidence 34455667777776 589999996 68999999987644
No 24
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=46.58 E-value=1.5e+02 Score=24.15 Aligned_cols=68 Identities=21% Similarity=0.334 Sum_probs=46.2
Q ss_pred cEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhcC
Q psy9348 44 NVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHC 123 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~ 123 (308)
+++|++=|.-|.+|..+++-++|+. ++++.+.- + |++.--+-.+++.+.+++.
T Consensus 3 ~ili~sHG~~A~gl~~s~~~i~G~~-----------------------~~i~~i~~--~--~~~~~~~~~~~l~~~i~~~ 55 (116)
T TIGR00824 3 AIIISGHGQAAIALLKSAEMIFGEQ-----------------------NNVGAVPF--V--PGENAETLQEKYNAALADL 55 (116)
T ss_pred EEEEEecHHHHHHHHHHHHHHcCCc-----------------------CCeEEEEc--C--CCcCHHHHHHHHHHHHHhc
Confidence 4788999999999999999998754 23455531 1 3344444667888888888
Q ss_pred CCCCEEEEE--EeCCcc
Q psy9348 124 TKDDVVLVL--ISGGGS 138 (308)
Q Consensus 124 ~~~Dlvl~L--ISGGgS 138 (308)
.++|-+||| +-||.-
T Consensus 56 ~~~~~vivltDl~GGSp 72 (116)
T TIGR00824 56 DTEEEVLFLVDIFGGSP 72 (116)
T ss_pred CCCCCEEEEEeCCCCCH
Confidence 766644444 677764
No 25
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=45.18 E-value=25 Score=29.66 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=27.6
Q ss_pred CCCCHhh----HHHHHHHHHHHhcCCCCC---EEEEEEeCCcc
Q psy9348 103 NLPDEAS----CQNTQLIQNFVKHCTKDD---VVLVLISGGGS 138 (308)
Q Consensus 103 P~Pd~~s----~~Aa~~il~~~~~~~~~D---lvl~LISGGgS 138 (308)
|++|-.+ ..+.+.|.+.+++++.+. .+.+.||||=.
T Consensus 60 ~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK 102 (124)
T TIGR03642 60 KFDDILSDEDILTFMSIAAKEVKKERENYGCERIIVNISGGRK 102 (124)
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecCCHH
Confidence 5666555 667778888888887765 79999999943
No 26
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=44.32 E-value=26 Score=27.76 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=22.7
Q ss_pred cccC-cEEEEEechhHHHHHHHHHHHhcccccceEEEecC
Q psy9348 40 LIKN-NVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPF 78 (308)
Q Consensus 40 ~l~~-~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~ 78 (308)
++++ ++.|||.|+.|..-++.+.+. | ..=.|+.|.
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~-g---A~v~vis~~ 39 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEA-G---AKVTVISPE 39 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCC-T---BEEEEEESS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-C---CEEEEECCc
Confidence 4444 999999999999777766552 1 223455554
No 27
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=44.20 E-value=1.3e+02 Score=28.65 Aligned_cols=123 Identities=18% Similarity=0.233 Sum_probs=80.2
Q ss_pred ceeeeecceecccCcEEEEEechh-HHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEe--cCCCCCCC
Q psy9348 30 NKLIIRDQTVLIKNNVYLIGFGKA-VLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRE--CARNNLPD 106 (308)
Q Consensus 30 ~~L~v~~~~~~l~~~i~vvg~GKA-a~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~e--ga~HP~Pd 106 (308)
+.|+|+++.|. .| +++|-||. +....+.+.+.-|..+. .+-+-...... .. ....-++++. + -|.+|+
T Consensus 6 d~l~i~g~~f~--SR-L~lGTgky~s~~~~~~ai~aSg~evv-TvalRR~~~~~-~~---~~~~~l~~i~~~~-~~~LPN 76 (267)
T CHL00162 6 DKLKIGNKSFN--SR-LMLGTGKYKSLKDAIQSIEASGCEIV-TVAIRRLNNNL-LN---DNSNLLNGLDWNK-LWLLPN 76 (267)
T ss_pred CceEECCEEee--cc-eEEecCCCCCHHHHHHHHHHhCCcEE-EEEEEEeccCc-CC---CcchHHHhhchhc-cEECCc
Confidence 46889998886 24 47999998 77777777777776543 22222211100 00 0001122222 3 478898
Q ss_pred HhhHHHHHHHHHHH---hcCC------CCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCCh
Q psy9348 107 EASCQNTQLIQNFV---KHCT------KDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANI 167 (308)
Q Consensus 107 ~~s~~Aa~~il~~~---~~~~------~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I 167 (308)
..+..-+++.+..+ +++. ..|.+=+=|-|----|++-| .+..+.++.|.+-|...
T Consensus 77 TaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~------~etl~Aae~Lv~eGF~V 140 (267)
T CHL00162 77 TAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDP------IGTLKAAEFLVKKGFTV 140 (267)
T ss_pred CcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCCh------HHHHHHHHHHHHCCCEE
Confidence 88777777655444 7777 67888888899888899888 56778899999999754
No 28
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=42.55 E-value=90 Score=30.02 Aligned_cols=133 Identities=13% Similarity=0.136 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCCCCH--HHHHHHHHHHHhCCCChHHHHHHHHhh-------cc
Q psy9348 109 SCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSL--EDKLKTIKLLVQSGANIKELNKVRKKL-------SD 179 (308)
Q Consensus 109 s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitL--edk~~~~~~Ll~sGA~I~EiN~VRkhL-------S~ 179 (308)
+.+--+++++.+++. ..+--|++||| ++..+ +++.++.+.|.+-| .+..+|-|- ++
T Consensus 120 ~~~e~~~~i~~i~~~--~~I~~VilSGG---------DPl~~~~~~L~~ll~~l~~i~----~v~~iri~Tr~~v~~p~r 184 (321)
T TIGR03822 120 SPAELDAAFAYIADH--PEIWEVILTGG---------DPLVLSPRRLGDIMARLAAID----HVKIVRFHTRVPVADPAR 184 (321)
T ss_pred CHHHHHHHHHHHHhC--CCccEEEEeCC---------CcccCCHHHHHHHHHHHHhCC----CccEEEEeCCCcccChhh
Confidence 334445666666542 23445779998 34443 57778888886643 222233331 11
Q ss_pred cccchHhhhhcCCeEEEEEEecCCCCCCCccccCcccCCCCCHHHHHHHHHHhCCCccchHHHHHHHccCCCCCCCCCCC
Q psy9348 180 VKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSVMTILSHETPHQDTKYFE 259 (308)
Q Consensus 180 vKGG~La~~~~pa~v~sLilSDV~Gd~l~~IaSGPt~pd~~t~~da~~il~~y~l~~~lp~~v~~~L~~~~~~~~~~~~~ 259 (308)
+- -.+++.+..+.....|.-|... + .-+ .....+|++.|.+.|+. +
T Consensus 185 it-~ell~~L~~~g~~v~i~l~~~h-~-~el--------~~~~~~ai~~L~~~Gi~--v--------------------- 230 (321)
T TIGR03822 185 VT-PALIAALKTSGKTVYVALHANH-A-REL--------TAEARAACARLIDAGIP--M--------------------- 230 (321)
T ss_pred cC-HHHHHHHHHcCCcEEEEecCCC-h-hhc--------CHHHHHHHHHHHHcCCE--E---------------------
Confidence 21 2445554333321223334321 1 111 12244555555666641 0
Q ss_pred CeeEEEEe---chHHHHHHHHHHHHHCCCcEEEc
Q psy9348 260 NVHNHIIG---NNRAALLGAKWKAESLGFQTVIL 290 (308)
Q Consensus 260 ~~~~~iig---~n~~al~aA~~~A~~~G~~~~il 290 (308)
.++.+++. +|...+....+.+.++|..+..+
T Consensus 231 ~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl 264 (321)
T TIGR03822 231 VSQSVLLRGVNDDPETLAALMRAFVECRIKPYYL 264 (321)
T ss_pred EEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEE
Confidence 23344554 67778888899999999776554
No 29
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=41.73 E-value=36 Score=32.37 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=30.5
Q ss_pred HHHHHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCC
Q psy9348 115 LIQNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGAN 166 (308)
Q Consensus 115 ~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~ 166 (308)
++.+.+.+. .-+-+.+||.||+++.+..+ -++.+++.+.|.+.|+.
T Consensus 245 ~~~~~~~~~---GAlga~mSGSGptvfaL~~~---~~~a~~i~~~l~~~g~~ 290 (296)
T PRK14615 245 RLKETLLRH---GAAAALMSGSGSSVFGLFRR---RAQAEAAFEMLKGHNIR 290 (296)
T ss_pred HHHHHHHhc---CCCEEEEeccCcceEEEeCC---HHHHHHHHHHHhhhccc
Confidence 444444433 34667899999999998643 35556777777776643
No 30
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=41.41 E-value=29 Score=33.13 Aligned_cols=49 Identities=24% Similarity=0.254 Sum_probs=34.4
Q ss_pred cCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhcccccchHhhhh
Q psy9348 122 HCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLAEIV 189 (308)
Q Consensus 122 ~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~vKGG~La~~~ 189 (308)
.++++|+||+ ||..|+ -.+.....+...+.|+.+-- ++...++.|++.+
T Consensus 123 ~l~~~DvvI~-IS~SG~-----------T~~vi~al~~Ak~~Ga~tIa-------IT~~~~s~La~~a 171 (291)
T TIGR00274 123 HLTKNDVVVG-IAASGR-----------TPYVIAGLQYARSLGALTIS-------IACNPKSAASEIA 171 (291)
T ss_pred CCCCCCEEEE-EeCCCC-----------cHHHHHHHHHHHHCCCeEEE-------EECCCCChhHHhC
Confidence 5789998887 555555 25677888888888977654 4456667777654
No 31
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=40.73 E-value=1.1e+02 Score=28.99 Aligned_cols=73 Identities=16% Similarity=0.133 Sum_probs=51.2
Q ss_pred CCCCC-CHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9348 101 RNNLP-DEASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRK 175 (308)
Q Consensus 101 ~HP~P-d~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRk 175 (308)
.+|+| -++..+-++.|-+++++.+.+.-|+++-|||-|==|.-+..|..-++.-+-.-..++ | +..++-....
T Consensus 154 ~~p~~~~~~~~~lG~al~~~i~~~~~d~rV~iIaSG~LSH~l~~~~~g~~~~~~D~~f~~~l~-~-d~~~l~~~~~ 227 (279)
T PRK13365 154 QYPLPTARRCYRLGQALRRAIESYPEDLRVVVVGTGGLSHQIHGERSGFNNTEWDMEFLDRFQ-H-APETLTDLTH 227 (279)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCCCccCCCHHHHHHHHHHHh-h-CHHHHHcCCH
Confidence 47887 467789999999999998888899999999999777643334222454443333334 5 7766666655
No 32
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=40.17 E-value=94 Score=31.00 Aligned_cols=108 Identities=20% Similarity=0.278 Sum_probs=67.8
Q ss_pred EEechhHHHHHHHHHHHhcccccceEEEecCCCccccCCC------CCCCC-ceEEEecCCCCCCCHhhHHHHHHHHHHH
Q psy9348 48 IGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQ------FNKNS-EIEIRECARNNLPDEASCQNTQLIQNFV 120 (308)
Q Consensus 48 vg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~------~~~~~-~i~v~ega~HP~Pd~~s~~Aa~~il~~~ 120 (308)
+=||.-+..........+| ..+-+|||-.+... .... +.... .+.++.. --|-|+...++++-+..
T Consensus 10 i~fG~g~l~~l~~~~~~~g--~~r~liVTd~~~~~-~g~~~~v~~~L~~~~i~~~if~~-v~p~P~~~~v~~~~~~~--- 82 (377)
T COG1454 10 ILFGRGSLKELGEEVKRLG--AKRALIVTDRGLAK-LGLLDKVLDSLDAAGIEYEVFDE-VEPEPTIETVEAGAEVA--- 82 (377)
T ss_pred EEecCChHHHHHHHHHhcC--CCceEEEECCcccc-chhHHHHHHHHHhcCCeEEEecC-CCCCCCHHHHHHHHHHH---
Confidence 3366667777777777665 33567777654211 0000 01111 3557765 58889888887776555
Q ss_pred hcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHh
Q psy9348 121 KHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKK 176 (308)
Q Consensus 121 ~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkh 176 (308)
++.++ |.+|.| ||||+| |..+....|...+-++.+.=-++|-
T Consensus 83 ~~~~~-D~iIal--GGGS~~-----------D~AK~i~~~~~~~~~~~~~~~i~~~ 124 (377)
T COG1454 83 REFGP-DTIIAL--GGGSVI-----------DAAKAIALLAENPGSVLDYEGIGKV 124 (377)
T ss_pred HhcCC-CEEEEe--CCccHH-----------HHHHHHHHHhhCCchhhhhcccccc
Confidence 44444 666665 999975 8889999999998666665556654
No 33
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=38.21 E-value=1.2e+02 Score=28.87 Aligned_cols=89 Identities=15% Similarity=0.217 Sum_probs=46.3
Q ss_pred cEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEE------EecCCCCCCCHhhHHHHHHHH
Q psy9348 44 NVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEI------RECARNNLPDEASCQNTQLIQ 117 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v------~ega~HP~Pd~~s~~Aa~~il 117 (308)
+|.|||+|.|...+...+.+. +.+- -.++.+.-... .+... +...++.+ =.|+ ..-|. .+.+++++..
T Consensus 2 ~i~viGvGg~G~n~v~~l~~~-~~~~-~~~~a~ntD~~-~L~~~-~~~~k~~ig~~~t~g~Ga-g~~~~-~g~~~a~~~~ 75 (304)
T cd02201 2 KIKVIGVGGGGGNAVNRMIES-GLEG-VEFIAANTDAQ-ALAKS-KAPNKIQLGKELTRGLGA-GGDPE-VGRKAAEESR 75 (304)
T ss_pred eEEEEEeCCcHHHHHHHHHHc-CCCC-ceEEEEECCHH-HHhcC-CCCcEEEcCCCCCCCCCC-CCCHH-HHHHHHHHHH
Confidence 588999999999999998774 2211 23444432211 01110 11123322 0122 33444 4455666555
Q ss_pred HHHhcC-CCCCEEEEEEe-CCcc
Q psy9348 118 NFVKHC-TKDDVVLVLIS-GGGS 138 (308)
Q Consensus 118 ~~~~~~-~~~Dlvl~LIS-GGgS 138 (308)
+.+++. ..-|.|++.-| |||.
T Consensus 76 ~~I~~~l~~~d~v~i~aglGGGT 98 (304)
T cd02201 76 EEIKEALEGADMVFITAGMGGGT 98 (304)
T ss_pred HHHHHHHhCCCEEEEeeccCCCc
Confidence 555443 45777766666 6655
No 34
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=38.21 E-value=30 Score=31.20 Aligned_cols=33 Identities=18% Similarity=0.025 Sum_probs=25.1
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcccccceEEEecCC
Q psy9348 43 NNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFG 79 (308)
Q Consensus 43 ~~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g 79 (308)
.+|.|||.|+.+...++.+.+ .|.++ .|+.|.-
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~-~ga~V---tVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLK-AGAQL---RVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHH-CCCEE---EEEcCCC
Confidence 399999999999999999887 44343 3555643
No 35
>PRK05638 threonine synthase; Validated
Probab=37.77 E-value=71 Score=32.07 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=37.7
Q ss_pred CCCCCEEEEEEeCCcccc-ccCCCCCCCHHHHHHHHHHHHhCC-CChH----HHH------HHHHhhcccccchHhh
Q psy9348 123 CTKDDVVLVLISGGGSAC-LSSPKSPLSLEDKLKTIKLLVQSG-ANIK----ELN------KVRKKLSDVKGGQLAE 187 (308)
Q Consensus 123 ~~~~Dlvl~LISGGgSAL-l~~P~~gitLedk~~~~~~Ll~sG-A~I~----EiN------~VRkhLS~vKGG~La~ 187 (308)
+.+++.|+++++|+|--= -+.-.+.+.++++...+=.+|+.| .... .|+ +|++||.+++--+|..
T Consensus 341 i~~~~~Vv~i~tG~g~k~~~~~~~~~~~~~~~r~~IL~~L~~~~~~~~el~~~l~~~~s~~~v~~hL~~Le~~GLV~ 417 (442)
T PRK05638 341 IEKGDKVVLVVTGSGLKGYGEGGREKFTIGGTKLEILKILSEREMYGYEIWKALGKPLKYQAVYQHIKELEELGLIE 417 (442)
T ss_pred CCCCCeEEEEeCCCCCCCCCCCchhhhcccchHHHHHHHHhhCCccHHHHHHHHcccCCcchHHHHHHHHHHCCCEE
Confidence 466889999999988432 222233355555544433344443 2222 233 7888888887666664
No 36
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=36.65 E-value=1.7e+02 Score=27.90 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=54.9
Q ss_pred CCCCCC-HhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9348 101 RNNLPD-EASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRK 175 (308)
Q Consensus 101 ~HP~Pd-~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRk 175 (308)
..|.|+ ++..+=++.|-+++++.+.+.-|+++=|||-|==|..|..|..=++.-+..-..++ + +..++.....
T Consensus 154 ~~p~~~~~r~~~lG~al~~~i~~~~~d~rV~iIaSGgLSH~l~~p~~g~~~~~fD~~~l~~l~-~-d~~~l~~l~~ 227 (284)
T PRK13366 154 QYPVPSGRRCFALGQAIRRAVESYDEDLNVQIWGTGGMSHQLQGPRAGLINREWDNAFLDRLI-A-DPDGLSKMPH 227 (284)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEecCccccCCCCCCCCCCcHHHHHHHHHHHh-c-CHHHHHcCCH
Confidence 467777 56789999999999998888889999999999998888666433555544444443 4 7877776654
No 37
>KOG3857|consensus
Probab=36.33 E-value=1e+02 Score=30.86 Aligned_cols=97 Identities=24% Similarity=0.269 Sum_probs=57.6
Q ss_pred EEechhHHHHHHHHHHHhcccccceEEEecCCCccc--c----CCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHh
Q psy9348 48 IGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGI--L----KPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVK 121 (308)
Q Consensus 48 vg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~--~----~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~ 121 (308)
+=|||++..=...=.+-+|-+ +.+++|-.+.... . +.+....=+++||.. .-|-|+.+|+.++-+ +++
T Consensus 51 ~rfG~gv~~Evg~dikn~gaK--k~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~-v~~ePtv~s~~~ale---fak 124 (465)
T KOG3857|consen 51 SRFGKGVLAEVGDDIKNLGAK--KTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDK-VQPEPTVGSVTAALE---FAK 124 (465)
T ss_pred hhhcchhHHHHHHHHHhcCcc--ceEEeeCCChhhcccHHHHHHHHHHcCCceEEecC-ccCCCchhhHHHHHH---HHH
Confidence 458998876555555556543 5677765553210 0 000011136899987 799999999987754 444
Q ss_pred cCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCC
Q psy9348 122 HCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSG 164 (308)
Q Consensus 122 ~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sG 164 (308)
+ +.-| .|+--||||++ |-.+...+|...|
T Consensus 125 ~-~~fD--s~vaiGGGSa~-----------DtaKaaaL~Asn~ 153 (465)
T KOG3857|consen 125 K-KNFD--SFVAIGGGSAH-----------DTAKAAALLASNG 153 (465)
T ss_pred h-cccc--eEEEEcCcchh-----------hhHHHHHHhhcCC
Confidence 4 3333 34556999986 4455556666655
No 38
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=36.20 E-value=33 Score=29.51 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=19.9
Q ss_pred ccC-cEEEEEechhHHHHHHHHHH
Q psy9348 41 IKN-NVYLIGFGKAVLGMAVEIEA 63 (308)
Q Consensus 41 l~~-~i~vvg~GKAa~~MA~a~~~ 63 (308)
+++ +|.|||.|+.+..-++.+.+
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~ 34 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKD 34 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHh
Confidence 444 99999999999999988877
No 39
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=36.19 E-value=2.5e+02 Score=27.17 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=63.8
Q ss_pred cccCcEEEEEe-chhHHHHHHHHHHHhcccccceEEEecC-CCccccCC-C--------CCCCCceEEEecCCCCCCCHh
Q psy9348 40 LIKNNVYLIGF-GKAVLGMAVEIEAMFRPQRLKGILSVPF-GSVGILKP-Q--------FNKNSEIEIRECARNNLPDEA 108 (308)
Q Consensus 40 ~l~~~i~vvg~-GKAa~~MA~a~~~~lg~~i~~G~Vv~p~-g~~~~~~~-~--------~~~~~~i~v~ega~HP~Pd~~ 108 (308)
+.+.++.|-|| ||.+-.+++...+. |-++..|+ +|. |....... . .....+..++.- |
T Consensus 6 ~k~tkvivqGitg~~gtfh~~~~l~y-Gt~~V~Gv--tPgkgG~~~~g~PVf~tV~EA~~~~~a~~svI~V-----p--- 74 (293)
T COG0074 6 NKDTKVIVQGITGKQGTFHTEQMLAY-GTKIVGGV--TPGKGGQTILGLPVFNTVEEAVKETGANASVIFV-----P--- 74 (293)
T ss_pred cCCCeEEEeccccccchHHHHHHHHh-CCceeecc--cCCCCceEEcCccHHHHHHHHHHhhCCCEEEEec-----C---
Confidence 33458888886 89999999998887 87766663 342 11100000 0 000112333321 2
Q ss_pred hHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCCh
Q psy9348 109 SCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANI 167 (308)
Q Consensus 109 s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I 167 (308)
.--|++.++|.+.. +..++++|| ++|+..|..++-+.+.+.|..|
T Consensus 75 ~~~aadai~EAida---~i~liv~IT-----------EgIP~~D~~~~~~~a~~~g~~i 119 (293)
T COG0074 75 PPFAADAILEAIDA---GIKLVVIIT-----------EGIPVLDMLELKRYAREKGTRL 119 (293)
T ss_pred cHHHHHHHHHHHhC---CCcEEEEEe-----------CCCCHHHHHHHHHHHHhcCCEE
Confidence 23566777766544 467777776 7899999999999999888544
No 40
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=36.15 E-value=3.5e+02 Score=25.16 Aligned_cols=50 Identities=22% Similarity=0.261 Sum_probs=33.3
Q ss_pred hcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhcccccchHhhhh
Q psy9348 121 KHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLAEIV 189 (308)
Q Consensus 121 ~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~vKGG~La~~~ 189 (308)
..++++|+| +.||..|+. .+.....+...+.|+++- -++.-.+..|++.+
T Consensus 114 ~~l~~~Dvv-I~IS~SG~T-----------~~vi~al~~Ak~~Ga~~I-------~It~~~~s~L~~~a 163 (257)
T cd05007 114 INLTERDVV-IGIAASGRT-----------PYVLGALRYARARGALTI-------GIACNPGSPLLQLA 163 (257)
T ss_pred cCCCCCCEE-EEEeCCCCC-----------HHHHHHHHHHHHCCCeEE-------EEECCCCChhHHhC
Confidence 556899988 777777763 456777777788888763 33445556666553
No 41
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=36.02 E-value=3.3e+02 Score=24.53 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCChHHH
Q psy9348 146 SPLSLEDKLKTIKLLVQSGANIKEL 170 (308)
Q Consensus 146 ~gitLedk~~~~~~Ll~sGA~I~Ei 170 (308)
..+|.++|.++.+.|.+.|.++-|+
T Consensus 14 ~~~s~e~~~~i~~~L~~~GV~~IEv 38 (265)
T cd03174 14 ATFSTEDKLEIAEALDEAGVDSIEV 38 (265)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 3479999999999999999887664
No 42
>PHA02591 hypothetical protein; Provisional
Probab=35.66 E-value=54 Score=25.65 Aligned_cols=38 Identities=24% Similarity=0.415 Sum_probs=28.7
Q ss_pred CccccccCCCCCCCHHHHHHHHHHHHhCCCChHHH--------HHHHHhhc
Q psy9348 136 GGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKEL--------NKVRKKLS 178 (308)
Q Consensus 136 GgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~Ei--------N~VRkhLS 178 (308)
|||-.|-- +-+|...+.+.|.+.|.++++| .+|||-++
T Consensus 36 ~~~ryfi~-----~~dd~~~vA~eL~eqGlSqeqIA~~LGVsqetVrKYL~ 81 (83)
T PHA02591 36 GQTRYFVE-----SEDDLISVTHELARKGFTVEKIASLLGVSVRKVRRYLE 81 (83)
T ss_pred CCEEEEEe-----ccchHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHh
Confidence 55555433 3478999999999999999997 56777654
No 43
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.23 E-value=18 Score=29.37 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHhcCC-CCCEEEEEEeCC---ccccccCCCCCC
Q psy9348 109 SCQNTQLIQNFVKHCT-KDDVVLVLISGG---GSACLSSPKSPL 148 (308)
Q Consensus 109 s~~Aa~~il~~~~~~~-~~Dlvl~LISGG---gSALl~~P~~gi 148 (308)
.+.|+.+.++++.++. +.-.++|-=||| ||+=||.|..+.
T Consensus 6 ~V~aT~aAl~Li~~l~~~hgpvmFHQSGGCCDGSsPMCYP~~~f 49 (116)
T COG3564 6 RVLATPAALDLIAELQAEHGPVMFHQSGGCCDGSSPMCYPRADF 49 (116)
T ss_pred ceecCHHHHHHHHHHHHhcCCEEEeccCCccCCCCCccccccce
Confidence 4567778888888874 667899999999 899999998763
No 44
>PRK06756 flavodoxin; Provisional
Probab=35.14 E-value=1.2e+02 Score=25.21 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=24.2
Q ss_pred CeeEEEEec-------hHHHHHHHHHHHHHCCCcEEEcCCCccc
Q psy9348 260 NVHNHIIGN-------NRAALLGAKWKAESLGFQTVILSSDIEG 296 (308)
Q Consensus 260 ~~~~~iig~-------n~~al~aA~~~A~~~G~~~~il~~~l~G 296 (308)
+....++|+ ...+++...+..++.|++++--.-.++|
T Consensus 83 ~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~ 126 (148)
T PRK06756 83 GKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVEL 126 (148)
T ss_pred CCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEec
Confidence 444566766 3577888888899999887543333333
No 45
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=33.56 E-value=40 Score=27.97 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.6
Q ss_pred CcEEEEEechhHHHHHHHHHHH
Q psy9348 43 NNVYLIGFGKAVLGMAVEIEAM 64 (308)
Q Consensus 43 ~~i~vvg~GKAa~~MA~a~~~~ 64 (308)
.++.|+|+|.++-..+.++.+.
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~ 34 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAAL 34 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHT
T ss_pred CEEEEECCHHHHHHHHHHHHHc
Confidence 3999999999999999988775
No 46
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=33.35 E-value=73 Score=25.89 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=26.8
Q ss_pred EEEEechHHHHHHHHHHHHHCCCcEEEcCCCccchHH
Q psy9348 263 NHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGD 299 (308)
Q Consensus 263 ~~iig~n~~al~aA~~~A~~~G~~~~il~~~l~Gea~ 299 (308)
-++|+|.....-.+.+.++++||+++.+.+.-+-.+.
T Consensus 4 kvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~ 40 (110)
T PF00289_consen 4 KVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVST 40 (110)
T ss_dssp EEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGH
T ss_pred EEEEECCCHHHHHHHHHHHHhCCcceeccCchhcccc
Confidence 4577776666666788899999999998776554443
No 47
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=33.19 E-value=61 Score=29.45 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=38.8
Q ss_pred CCceEEEecCCCCCCCHh-hHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCC
Q psy9348 91 NSEIEIRECARNNLPDEA-SCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSP 147 (308)
Q Consensus 91 ~~~i~v~ega~HP~Pd~~-s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~g 147 (308)
..++-|+-|+ -|.+++. -.+.|+++=+.+..-+ +++++||+.-+|+++.++
T Consensus 14 ~~~i~V~~gs-~~~~~~~~~~~~a~~lg~~la~~g-----~~V~tGG~~GiMea~~~g 65 (205)
T COG1611 14 IRQIVVICGS-ARGIEPEEYYELARELGRELAKRG-----LLVITGGGPGVMEAVARG 65 (205)
T ss_pred cceEEEEEeC-CCCCCCHHHHHHHHHHHHHHHhCC-----cEEEeCCchhhhhHHHHH
Confidence 3568888875 5544444 8888888877776655 889999999999999776
No 48
>COG3077 RelB DNA-damage-inducible protein J [DNA replication, recombination, and repair]
Probab=32.09 E-value=33 Score=27.28 Aligned_cols=63 Identities=16% Similarity=0.225 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHhCCCccchHHHHHHHccCCCCCCCCCCCCeeEEEEechHHHHHHHHHHHHHCCCcEE
Q psy9348 218 NEDLWSDARDIVIKYGLQNKVSKSVMTILSHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTV 288 (308)
Q Consensus 218 d~~t~~da~~il~~y~l~~~lp~~v~~~L~~~~~~~~~~~~~~~~~~iig~n~~al~aA~~~A~~~G~~~~ 288 (308)
|....++|.+||+++|| .+...|+-+|.+-..+..- .|. ..+-+|..-+++..+.-+ .|..+.
T Consensus 12 D~~vK~eA~~Vl~~mGl--t~S~airm~L~~va~~~~l-Pfd----l~~p~N~~tl~ai~e~~~-~~~~v~ 74 (88)
T COG3077 12 DDEVKEEATAVLEEMGL--TISDAIRMFLTKVAREGAL-PFD----LRLPSNAETLQAIKELDK-AGKGVE 74 (88)
T ss_pred cHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHcCCC-Ccc----ccCcccHHHHHHHHHHHh-cCCCch
Confidence 55678999999999999 7778898888763111100 111 112227777776555443 444443
No 49
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=31.79 E-value=43 Score=30.05 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=18.9
Q ss_pred cEEEEEechhHHHHHHHHHH
Q psy9348 44 NVYLIGFGKAVLGMAVEIEA 63 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~ 63 (308)
+|.|||.|+.|...++.+.+
T Consensus 12 ~vLVIGgG~va~~ka~~Ll~ 31 (202)
T PRK06718 12 RVVIVGGGKVAGRRAITLLK 31 (202)
T ss_pred EEEEECCCHHHHHHHHHHHH
Confidence 99999999999999998887
No 50
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=31.02 E-value=1.8e+02 Score=27.44 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=48.0
Q ss_pred CCCC-CHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCC-CCHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9348 102 NNLP-DEASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSP-LSLEDKLKTIKLLVQSGANIKELNKVRK 175 (308)
Q Consensus 102 HP~P-d~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~g-itLedk~~~~~~Ll~sGA~I~EiN~VRk 175 (308)
+|+| -+...+=++.|-+++++.+.+.-|+++-|||-|==|..+..| +. ++.-+-.-..++ + +...+-..-.
T Consensus 155 ~~l~~~~~~~~lG~al~~~i~~~~~d~rv~iIaSG~lSH~l~~~~~g~~~-~~~D~~f~~~l~-~-d~~~l~~~~~ 227 (277)
T cd07950 155 FPLPTARRCYKLGQALRRAIESYPEDLKVAVVGTGGLSHQVHGERAGFNN-TEWDMEFLDLIE-N-DPESLAAMTH 227 (277)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEcCccccCCCCCCCCCCC-HHHHHHHHHHHH-h-CHHHHHcCCH
Confidence 6774 456778899999999998778889999999999877643223 33 444444444444 3 6666555443
No 51
>PF13606 Ank_3: Ankyrin repeat
Probab=31.01 E-value=37 Score=20.94 Aligned_cols=15 Identities=27% Similarity=0.713 Sum_probs=13.0
Q ss_pred HHHHHHHHhCCCChH
Q psy9348 154 LKTIKLLVQSGANIK 168 (308)
Q Consensus 154 ~~~~~~Ll~sGA~I~ 168 (308)
.++.+.|++.|++|.
T Consensus 15 ~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 15 IEIVKYLLEHGADVN 29 (30)
T ss_pred HHHHHHHHHcCCCCC
Confidence 578899999999985
No 52
>PRK13373 putative dioxygenase; Provisional
Probab=30.44 E-value=1.1e+02 Score=30.10 Aligned_cols=46 Identities=15% Similarity=0.069 Sum_probs=37.6
Q ss_pred eEEEe-cCCCCCCCH-hhHHHHHHHHHHHhcCCCCCEEEEEEeCCccc
Q psy9348 94 IEIRE-CARNNLPDE-ASCQNTQLIQNFVKHCTKDDVVLVLISGGGSA 139 (308)
Q Consensus 94 i~v~e-ga~HP~Pd~-~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSA 139 (308)
|.|+- ...+|+|.- ++.+=++.|-+.+++.+++.-|+|+=|||=|=
T Consensus 145 VPV~vN~~~~P~p~~~R~~~lG~ai~~ai~~~~~d~rV~~~~sGgLSH 192 (344)
T PRK13373 145 IPVFTNVFSPPVMPYRRAYAFGAALRNAAEALDADLRVAFMATGGMSH 192 (344)
T ss_pred EEEEEecccCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEecCcccC
Confidence 44443 335888774 77888999999999998899999999999887
No 53
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=30.44 E-value=2.7e+02 Score=27.26 Aligned_cols=101 Identities=17% Similarity=0.203 Sum_probs=55.2
Q ss_pred echhHHHHHHHHHHHhcccccceEEEecCCCccc-----cCCCCCC-CCceEEEecCCCCCCCHhhHHHHHHHHHHHhcC
Q psy9348 50 FGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGI-----LKPQFNK-NSEIEIRECARNNLPDEASCQNTQLIQNFVKHC 123 (308)
Q Consensus 50 ~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~-----~~~~~~~-~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~ 123 (308)
||+-+..-.....+.+|. .+.+|++-.+.... ....+.. .-.+.++.+ .-|-|+...+ +++.+.+++.
T Consensus 12 fG~g~l~~l~~~l~~~g~--~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~-v~~~p~~~~v---~~~~~~~~~~ 85 (379)
T TIGR02638 12 FGAGAIEDIVDEVKRRGF--KKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDE-VKPNPTITVV---KAGVAAFKAS 85 (379)
T ss_pred ECcCHHHHHHHHHHhcCC--CEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECC-CCCCcCHHHH---HHHHHHHHhc
Confidence 677676666555555663 25677775432110 0000011 012455544 3566665555 4566666665
Q ss_pred CCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCC--CChHHH
Q psy9348 124 TKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSG--ANIKEL 170 (308)
Q Consensus 124 ~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sG--A~I~Ei 170 (308)
+. |.+|- -||||.+ |..+....+..++ .++.++
T Consensus 86 ~~-D~Iia--iGGGSvi-----------D~aKaia~~~~~~~~~~~~~~ 120 (379)
T TIGR02638 86 GA-DYLIA--IGGGSPI-----------DTAKAIGIISNNPEFADVRSL 120 (379)
T ss_pred CC-CEEEE--eCChHHH-----------HHHHHHHHHHhCCCCCCHHHh
Confidence 55 66554 4899875 6777777777775 555554
No 54
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=29.89 E-value=1.8e+02 Score=24.70 Aligned_cols=51 Identities=8% Similarity=0.050 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHhCCCccchHHHHHHHccCCCCCCCCCCCCeeEEEEechHHHHHHHHHHHHHCCCcEEEcCC
Q psy9348 220 DLWSDARDIVIKYGLQNKVSKSVMTILSHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSS 292 (308)
Q Consensus 220 ~t~~da~~il~~y~l~~~lp~~v~~~L~~~~~~~~~~~~~~~~~~iig~n~~al~aA~~~A~~~G~~~~il~~ 292 (308)
-|.+-++++|++|++ .|..-+-.++|.+...-+..+....+.|+++.+..+
T Consensus 10 ~t~~a~~~ll~~~~~----------------------~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~ 60 (140)
T cd05212 10 PVAKAVKELLNKEGV----------------------RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW 60 (140)
T ss_pred cHHHHHHHHHHHcCC----------------------CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCC
Confidence 356667777777775 244556789999999888888889999999988764
No 55
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=29.69 E-value=6.8e+02 Score=26.32 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=34.1
Q ss_pred HhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhcccccchHhhhh
Q psy9348 120 VKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLAEIV 189 (308)
Q Consensus 120 ~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~vKGG~La~~~ 189 (308)
...++++|++|+ ||-.|.. .+..++.+..-+.|++|--|-. ....|++.+
T Consensus 510 ~~~l~~~DvvI~-iS~sG~t-----------~e~i~~~~~Ak~~Ga~vIaIT~--------~~spLa~~a 559 (638)
T PRK14101 510 AALLGKGDVIVA-VSKSGRA-----------PELLRVLDVAMQAGAKVIAITS--------SNTPLAKRA 559 (638)
T ss_pred HhcCCCCCEEEE-EeCCCCC-----------HHHHHHHHHHHHCCCeEEEEcC--------CCChhHhhC
Confidence 456789997765 7766542 5577888888889988866542 245666654
No 56
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=29.38 E-value=2.5e+02 Score=22.10 Aligned_cols=22 Identities=14% Similarity=0.378 Sum_probs=17.2
Q ss_pred cEEEEEechhHHHHHHHHHHHhc
Q psy9348 44 NVYLIGFGKAVLGMAVEIEAMFR 66 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~~lg 66 (308)
+||++|.| .+..+|..+...+.
T Consensus 1 ~I~i~G~G-~S~~~a~~~~~~l~ 22 (126)
T cd05008 1 RILIVGCG-TSYHAALVAKYLLE 22 (126)
T ss_pred CEEEEEcc-HHHHHHHHHHHHHH
Confidence 58999999 77777777776654
No 57
>PRK06703 flavodoxin; Provisional
Probab=28.28 E-value=1.8e+02 Score=24.24 Aligned_cols=67 Identities=9% Similarity=-0.058 Sum_probs=37.1
Q ss_pred cCCCCCCCccccCcccCCCCCHHHHHHHHHHhCCCccchHHHHHHHccCCCCCCCCCCCCeeEEEEec---h----HHHH
Q psy9348 201 DIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSVMTILSHETPHQDTKYFENVHNHIIGN---N----RAAL 273 (308)
Q Consensus 201 DV~Gd~l~~IaSGPt~pd~~t~~da~~il~~y~l~~~lp~~v~~~L~~~~~~~~~~~~~~~~~~iig~---n----~~al 273 (308)
|+...+.=+|+| ||+-+. .+|+.+..+++.-... .+.+....++|+ + ..+.
T Consensus 45 ~l~~~d~viigs-pt~~~g-----------------~~p~~~~~f~~~l~~~----~l~~k~~~vfg~g~~~y~~~~~a~ 102 (151)
T PRK06703 45 ELLAYDGIILGS-YTWGDG-----------------DLPYEAEDFHEDLENI----DLSGKKVAVFGSGDTAYPLFCEAV 102 (151)
T ss_pred HHhcCCcEEEEE-CCCCCC-----------------cCcHHHHHHHHHHhcC----CCCCCEEEEEccCCCChHHHHHHH
Confidence 455556667777 887442 3344455444321100 122334567765 2 3555
Q ss_pred HHHHHHHHHCCCcEEE
Q psy9348 274 LGAKWKAESLGFQTVI 289 (308)
Q Consensus 274 ~aA~~~A~~~G~~~~i 289 (308)
+...+..+++|++.+-
T Consensus 103 ~~l~~~l~~~G~~~~~ 118 (151)
T PRK06703 103 TIFEERLVERGAELVQ 118 (151)
T ss_pred HHHHHHHHHCCCEEcc
Confidence 6677888999997643
No 58
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=27.97 E-value=89 Score=23.95 Aligned_cols=29 Identities=31% Similarity=0.633 Sum_probs=24.9
Q ss_pred hCCCChHHH--------HHHHHhhcc-cccchHhhhhc
Q psy9348 162 QSGANIKEL--------NKVRKKLSD-VKGGQLAEIVY 190 (308)
Q Consensus 162 ~sGA~I~Ei--------N~VRkhLS~-vKGG~La~~~~ 190 (308)
..|.++.|| |+||+|+++ .+-|.|.+.++
T Consensus 30 ~eGlS~kEIAe~LGIS~~TVk~~l~~~~~~~~~~~~~~ 67 (73)
T TIGR03879 30 EAGKTASEIAEELGRTEQTVRNHLKGETKAGGLVKLAY 67 (73)
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhcCcccchHHHHHH
Confidence 489999987 899999999 78898888765
No 59
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=27.95 E-value=4.9e+02 Score=25.31 Aligned_cols=93 Identities=11% Similarity=0.146 Sum_probs=55.1
Q ss_pred cEEEEEechhHHHHHHHHHHHhccc---------cc---ceEEEecCCCccccCCCCCCCCceEEEecCCCCCCCHhhHH
Q psy9348 44 NVYLIGFGKAVLGMAVEIEAMFRPQ---------RL---KGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQ 111 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~~lg~~---------i~---~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~ 111 (308)
+-.+|+.|..+...+--+.+..|+- +- --+|++|+........ ....+|--+.|+-||+-++..-.
T Consensus 71 Pdl~I~aGrrta~l~~~lkk~~~~~~vVqI~~Prlp~~~fDlvivp~HD~~~~~s--~~~~Nilpi~Gs~h~Vt~~~lAa 148 (329)
T COG3660 71 PDLIITAGRRTAPLAFYLKKKFGGIKVVQIQDPRLPYNHFDLVIVPYHDWREELS--DQGPNILPINGSPHNVTSQRLAA 148 (329)
T ss_pred CceEEecccchhHHHHHHHHhcCCceEEEeeCCCCCcccceEEeccchhhhhhhh--ccCCceeeccCCCCcccHHHhhh
Confidence 7889999999999999999988771 11 1467777643211111 12357778888889998875433
Q ss_pred HHHHHHHHHhcCCCCCEEEEEEeCCccccc
Q psy9348 112 NTQLIQNFVKHCTKDDVVLVLISGGGSACL 141 (308)
Q Consensus 112 Aa~~il~~~~~~~~~Dlvl~LISGGgSALl 141 (308)
.=+.--+++ +.---.+.++-||-+-=+
T Consensus 149 ~~e~~~~~~---p~~rq~vAVlVGg~nk~f 175 (329)
T COG3660 149 LREAFKHLL---PLPRQRVAVLVGGNNKAF 175 (329)
T ss_pred hHHHHHhhC---CCCCceEEEEecCCCCCC
Confidence 222222222 322334445556655333
No 60
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=27.65 E-value=45 Score=30.84 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=16.3
Q ss_pred CCCCCEEEEEEeCCccccc
Q psy9348 123 CTKDDVVLVLISGGGSACL 141 (308)
Q Consensus 123 ~~~~Dlvl~LISGGgSALl 141 (308)
+.++|-+++.+|||-.|+.
T Consensus 26 i~~~~kilVa~SGG~DS~~ 44 (258)
T PRK10696 26 IEEGDRVMVCLSGGKDSYT 44 (258)
T ss_pred CCCCCEEEEEecCCHHHHH
Confidence 4689999999999988764
No 61
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=27.14 E-value=3.5e+02 Score=23.53 Aligned_cols=87 Identities=15% Similarity=0.173 Sum_probs=44.8
Q ss_pred HhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCC-hH-HHHHHH-Hhhcccccc
Q psy9348 107 EASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGAN-IK-ELNKVR-KKLSDVKGG 183 (308)
Q Consensus 107 ~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~-I~-EiN~VR-khLS~vKGG 183 (308)
+...++.+++...+.....+-+.+++.++...-+ .+++.+...++...+...|-+ +. -|+.+- ..+.+.+++
T Consensus 28 ~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~~-----~~~~~~~v~~~~~~~~p~G~T~l~~~l~~a~~~~~~~~~~~ 102 (199)
T cd01457 28 EEAQESTRALARKCEEYDSDGITVYLFSGDFRRY-----DNVNSSKVDQLFAENSPDGGTNLAAVLQDALNNYFQRKENG 102 (199)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEecCCcccc-----CCcCHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHHHhhc
Confidence 4566677777777777777777777777765333 234444444444333233332 22 222221 111111111
Q ss_pred hHhhhhcCCeEEEEEEecC
Q psy9348 184 QLAEIVYPATLVSLIISDI 202 (308)
Q Consensus 184 ~La~~~~pa~v~sLilSDV 202 (308)
.-.|...+-+++||=
T Consensus 103 ----~~~p~~~~vIiiTDG 117 (199)
T cd01457 103 ----ATCPEGETFLVITDG 117 (199)
T ss_pred ----cCCCCceEEEEEcCC
Confidence 112346888999994
No 62
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=27.07 E-value=1.1e+02 Score=23.53 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCChHHHHHH
Q psy9348 146 SPLSLEDKLKTIKLLVQSGANIKELNKV 173 (308)
Q Consensus 146 ~gitLedk~~~~~~Ll~sGA~I~EiN~V 173 (308)
.+++-+-..++++.|-+.|++|..|+.+
T Consensus 7 ~~~~a~~ia~Vs~~lA~~~~NI~~I~~l 34 (84)
T cd04871 7 RPLTAEQLAAVTRVVADQGLNIDRIRRL 34 (84)
T ss_pred CcCCHHHHHHHHHHHHHcCCCHHHHHHh
Confidence 3578899999999999999999999884
No 63
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=26.87 E-value=3.5e+02 Score=22.14 Aligned_cols=84 Identities=12% Similarity=0.143 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCCCCC-EEEEEEeCCccccccCCC--CCCCHHHHHHHHHHHH-hCCCChHHHHHHHHhhcccccchHh
Q psy9348 111 QNTQLIQNFVKHCTKDD-VVLVLISGGGSACLSSPK--SPLSLEDKLKTIKLLV-QSGANIKELNKVRKKLSDVKGGQLA 186 (308)
Q Consensus 111 ~Aa~~il~~~~~~~~~D-lvl~LISGGgSALl~~P~--~gitLedk~~~~~~Ll-~sGA~I~EiN~VRkhLS~vKGG~La 186 (308)
.+-+.+..++..++++| +=++..|.....+...+. ..-++++..+..+.+. ..|.++.+ .++.-+..++.
T Consensus 22 ~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~T~l~~--al~~a~~~l~~---- 95 (171)
T cd01461 22 QTKEALLTALKDLPPGDYFNIIGFSDTVEEFSPSSVSATAENVAAAIEYVNRLQALGGTNMND--ALEAALELLNS---- 95 (171)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEeCCCceeecCcceeCCHHHHHHHHHHHHhcCCCCCcCHHH--HHHHHHHhhcc----
Confidence 34445566677787766 566777776655543321 1222333333333332 34445543 44444443332
Q ss_pred hhhcCCeEEEEEEecC
Q psy9348 187 EIVYPATLVSLIISDI 202 (308)
Q Consensus 187 ~~~~pa~v~sLilSDV 202 (308)
.......-+++||=
T Consensus 96 --~~~~~~~iillTDG 109 (171)
T cd01461 96 --SPGSVPQIILLTDG 109 (171)
T ss_pred --CCCCccEEEEEeCC
Confidence 12346788899994
No 64
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=26.83 E-value=91 Score=28.61 Aligned_cols=40 Identities=25% Similarity=0.516 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHhCCCccchHHHHHHHccCCCCCCCCCCCCeeEEEEechHHHHHHHHHHHHHCCCcEE
Q psy9348 221 LWSDARDIVIKYGLQNKVSKSVMTILSHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTV 288 (308)
Q Consensus 221 t~~da~~il~~y~l~~~lp~~v~~~L~~~~~~~~~~~~~~~~~~iig~n~~al~aA~~~A~~~G~~~~ 288 (308)
+..++.++|+.||+ .. +.+.+..|...|.+ .|+++||+++
T Consensus 11 ~e~e~~~lL~~yGI--~~----------------------~~~~~~~~~~ea~~----~a~~ig~Pvv 50 (222)
T PF13549_consen 11 TEAEAKELLAAYGI--PV----------------------PPTRLVTSAEEAVA----AAEEIGFPVV 50 (222)
T ss_dssp -HHHHHHHHHTTT------------------------------EEESSHHHHHH----HHHHH-SSEE
T ss_pred CHHHHHHHHHHcCc--CC----------------------CCeeEeCCHHHHHH----HHHHhCCCEE
Confidence 37899999999998 11 22345555555544 5677799864
No 65
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=26.64 E-value=5.5e+02 Score=24.25 Aligned_cols=122 Identities=18% Similarity=0.262 Sum_probs=75.5
Q ss_pred eeeecceecccCcEEEEEechh-HHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEe-cCCCCCCCHhh
Q psy9348 32 LIIRDQTVLIKNNVYLIGFGKA-VLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRE-CARNNLPDEAS 109 (308)
Q Consensus 32 L~v~~~~~~l~~~i~vvg~GKA-a~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~e-ga~HP~Pd~~s 109 (308)
|.|+++.|. .| +++|-||. ...+.+.+.+.-|..+. .+-+-....... ....-++.+. ..-|.+|+.++
T Consensus 1 ~~i~~~~~~--SR-l~~Gtgky~s~~~~~~ai~aSg~~iv-Tva~rR~~~~~~-----~~~~~~~~i~~~~~~~lpNTaG 71 (248)
T cd04728 1 LTIGGKTFS--SR-LLLGTGKYPSPAIMKEAIEASGAEIV-TVALRRVNIGDP-----GGESFLDLLDKSGYTLLPNTAG 71 (248)
T ss_pred CeECCEEee--cc-eEEecCCCCCHHHHHHHHHHhCCCEE-EEEEEecccCCC-----CcchHHhhccccCCEECCCCCC
Confidence 356677664 24 47999998 77777777777776543 222222211000 0011122222 12478888877
Q ss_pred HHHHHH---HHHHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChH
Q psy9348 110 CQNTQL---IQNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIK 168 (308)
Q Consensus 110 ~~Aa~~---il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~ 168 (308)
..-+++ +-++.+++...|.+=+=|-|----|++-| .+..+-++.|.+-|...-
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~------~~tv~aa~~L~~~Gf~vl 127 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDP------IETLKAAEILVKEGFTVL 127 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCH------HHHHHHHHHHHHCCCEEE
Confidence 766665 44566788888888877777776776655 677888888988887653
No 66
>PRK13936 phosphoheptose isomerase; Provisional
Probab=26.55 E-value=4.5e+02 Score=23.20 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=23.7
Q ss_pred hcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCCh
Q psy9348 121 KHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANI 167 (308)
Q Consensus 121 ~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I 167 (308)
...+++|++|+ ||..|.. .+..++.+.+.+.|++|
T Consensus 107 ~~~~~~Dv~i~-iS~sG~t-----------~~~~~~~~~ak~~g~~i 141 (197)
T PRK13936 107 ALGQPGDVLLA-ISTSGNS-----------ANVIQAIQAAHEREMHV 141 (197)
T ss_pred HhCCCCCEEEE-EeCCCCc-----------HHHHHHHHHHHHCCCeE
Confidence 44578888777 7776652 55667777777777665
No 67
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=26.47 E-value=44 Score=28.59 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=17.8
Q ss_pred CcEEEEEechhHHHHHHHHHHH
Q psy9348 43 NNVYLIGFGKAVLGMAVEIEAM 64 (308)
Q Consensus 43 ~~i~vvg~GKAa~~MA~a~~~~ 64 (308)
++|.|||.|+.|..+|..+.+.
T Consensus 168 k~V~VVG~G~SA~d~a~~l~~~ 189 (203)
T PF13738_consen 168 KRVVVVGGGNSAVDIAYALAKA 189 (203)
T ss_dssp SEEEEE--SHHHHHHHHHHTTT
T ss_pred CcEEEEcChHHHHHHHHHHHhh
Confidence 4999999999999999888775
No 68
>PRK13938 phosphoheptose isomerase; Provisional
Probab=26.43 E-value=4.7e+02 Score=23.37 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=21.8
Q ss_pred hcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCCh
Q psy9348 121 KHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANI 167 (308)
Q Consensus 121 ~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I 167 (308)
..++++|++|+ ||..|.. ++..+..+...+.|+++
T Consensus 109 ~~~~~~DllI~-iS~SG~t-----------~~vi~a~~~Ak~~G~~v 143 (196)
T PRK13938 109 GSARPGDTLFA-ISTSGNS-----------MSVLRAAKTARELGVTV 143 (196)
T ss_pred hcCCCCCEEEE-EcCCCCC-----------HHHHHHHHHHHHCCCEE
Confidence 55678887554 5555531 55666666666666655
No 69
>COG1318 Predicted transcriptional regulators [Transcription]
Probab=26.36 E-value=88 Score=28.04 Aligned_cols=49 Identities=31% Similarity=0.427 Sum_probs=36.3
Q ss_pred cCCCCCCCHHHHHHHHHH---HHhCCCChHHHH--------HHHHhhcc-cccchHhhhhc
Q psy9348 142 SSPKSPLSLEDKLKTIKL---LVQSGANIKELN--------KVRKKLSD-VKGGQLAEIVY 190 (308)
Q Consensus 142 ~~P~~gitLedk~~~~~~---Ll~sGA~I~EiN--------~VRkhLS~-vKGG~La~~~~ 190 (308)
.-|...+|--|-.....- .-..|.+|.||- |||+||-. .|.|+|++..|
T Consensus 36 ~~~~~~lTWvdSLavAAga~arekag~Ti~EIAeelG~TeqTir~hlkgetkAG~lv~etY 96 (182)
T COG1318 36 KDPYERLTWVDSLAVAAGALAREKAGMTISEIAEELGRTEQTVRNHLKGETKAGQLVRETY 96 (182)
T ss_pred hCcccccchhhHHHHHHHHHHHHHccCcHHHHHHHhCCCHHHHHHHHhcchhhhhHHHHHH
Confidence 345666666555444332 267899999995 89999976 99999999986
No 70
>PRK00208 thiG thiazole synthase; Reviewed
Probab=26.24 E-value=5.6e+02 Score=24.22 Aligned_cols=121 Identities=17% Similarity=0.233 Sum_probs=71.0
Q ss_pred eeeecceecccCcEEEEEechh-HHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEe-cCCCCCCCHhh
Q psy9348 32 LIIRDQTVLIKNNVYLIGFGKA-VLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRE-CARNNLPDEAS 109 (308)
Q Consensus 32 L~v~~~~~~l~~~i~vvg~GKA-a~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~e-ga~HP~Pd~~s 109 (308)
|.|+++.|. .| +++|-||. .....+.+.+.-|..+. .+-+-...... ....-++.+. -.-|.+|+.++
T Consensus 2 l~i~~~~~~--SR-l~~Gtgky~s~~~~~~ai~asg~~iv-TvalrR~~~~~------~~~~~~~~i~~~~~~~lpNTaG 71 (250)
T PRK00208 2 LTIAGKTFS--SR-LLLGTGKYPSPQVMQEAIEASGAEIV-TVALRRVNLGQ------GGDNLLDLLPPLGVTLLPNTAG 71 (250)
T ss_pred cEECCEEee--cc-ceEecCCCCCHHHHHHHHHHhCCCeE-EEEEEeecCCC------CcchHHhhccccCCEECCCCCC
Confidence 667787775 24 47999998 66666666666765543 22221111110 0001122222 12588899887
Q ss_pred HHHHHHHH---HHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChH
Q psy9348 110 CQNTQLIQ---NFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIK 168 (308)
Q Consensus 110 ~~Aa~~il---~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~ 168 (308)
..-+++.+ ++.+++...+.+=+=+-|----|++-| .+..+-.+.|.+-|...-
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~------~~tv~aa~~L~~~Gf~vl 127 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDP------IETLKAAEILVKEGFVVL 127 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCH------HHHHHHHHHHHHCCCEEE
Confidence 77776544 566777778877666666544444433 666777788888887653
No 71
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=25.42 E-value=3.4e+02 Score=21.40 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=18.7
Q ss_pred cEEEEEechhHHHHHHHHHHHhc
Q psy9348 44 NVYLIGFGKAVLGMAVEIEAMFR 66 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~~lg 66 (308)
+||++|.| .+..+|+.+...+-
T Consensus 2 ~I~i~G~G-~S~~~a~~~~~~l~ 23 (128)
T cd05014 2 KVVVTGVG-KSGHIARKIAATLS 23 (128)
T ss_pred eEEEEeCc-HhHHHHHHHHHHhh
Confidence 79999999 77788888888773
No 72
>TIGR02763 chlamy_scaf chlamydiaphage internal scaffolding protein. Members of this protein family are encoded by genes in chlamydiaphage such as Chp2, viruses with around eight genes that infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein, initially designated VP3 (as if a structural protein of mature viral particles), is displaced from procapsids as DNA is packaged, and therefore is described as a scafolding protein.
Probab=25.07 E-value=48 Score=27.27 Aligned_cols=32 Identities=13% Similarity=0.028 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHH-HHhCCCccchHHHHHHHcc
Q psy9348 217 LNEDLWSDARDIV-IKYGLQNKVSKSVMTILSH 248 (308)
Q Consensus 217 pd~~t~~da~~il-~~y~l~~~lp~~v~~~L~~ 248 (308)
|++-.|++|+.++ +.+...+.||..||+.+..
T Consensus 28 ~sp~D~qeAln~Vie~~eaFdsLPAkvRe~FgN 60 (114)
T TIGR02763 28 PSPLDYQEALNIVIEGEEAFDSLPAKVRENFGN 60 (114)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhHHHHHHhCC
Confidence 4455699999877 4477788999999998866
No 73
>PRK11191 RNase E inhibitor protein; Provisional
Probab=25.06 E-value=1.6e+02 Score=25.17 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=34.0
Q ss_pred HHHHHHHccCCCCCCCCCCCCeeEEEEechHHHHHHHHHHHHHCCCcEE
Q psy9348 240 KSVMTILSHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTV 288 (308)
Q Consensus 240 ~~v~~~L~~~~~~~~~~~~~~~~~~iig~n~~al~aA~~~A~~~G~~~~ 288 (308)
..|.+.|.+....++ ....+.+++-..+..-++.++..|.++||.+.
T Consensus 15 ~eVi~~L~edGsd~~--~~~~IEH~~~f~d~~~lek~a~~a~klGyeV~ 61 (138)
T PRK11191 15 REIIEELLEDGSDPD--ALYTIEHHFSADDFDKLEKAAVEAFKLGYEVT 61 (138)
T ss_pred HHHHHHHHHcCCCcC--CCEEEEEEEecCCHHHHHHHHHHHHHcCCeee
Confidence 445555554322222 33468899999999999999999999999974
No 74
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=24.94 E-value=69 Score=29.64 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=29.6
Q ss_pred ceEEEec-CCCCCCCHhh----HHHHHHHHHHHhcCCC--CCEEEEEEeCC
Q psy9348 93 EIEIREC-ARNNLPDEAS----CQNTQLIQNFVKHCTK--DDVVLVLISGG 136 (308)
Q Consensus 93 ~i~v~eg-a~HP~Pd~~s----~~Aa~~il~~~~~~~~--~Dlvl~LISGG 136 (308)
.+.++.. .+.|++|-.| ..+++.|.+.+++++. +..|.+.||||
T Consensus 72 ~i~vi~~~~g~~l~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~lh~sIAGG 122 (224)
T PF09623_consen 72 HIHVIIDVNGLPLDDIRTEEDNEAFADFIYRLIRELKQDPGRRLHVSIAGG 122 (224)
T ss_pred ccEEEecCCCccccccCCHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 4544432 2367777655 4556677777788654 57999999999
No 75
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=24.55 E-value=3.8e+02 Score=25.61 Aligned_cols=82 Identities=16% Similarity=0.183 Sum_probs=43.4
Q ss_pred cEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEecC-------CCCCCCHhhHHHHHHH
Q psy9348 44 NVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECA-------RNNLPDEASCQNTQLI 116 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega-------~HP~Pd~~s~~Aa~~i 116 (308)
+|.|||+|.|...++..+.+. +.+-.. ++.+.-.... +... .. .-+++-|. ...-| +.+-++++++
T Consensus 2 ~i~viGvGg~G~n~v~~~~~~-~~~~~~-~iainTd~~~-L~~~-~a--~~ki~iG~~~t~g~GaG~~~-~~G~~~a~e~ 74 (303)
T cd02191 2 KIAVIGFGGAGGNIVDKFLEY-DKEGRS-AVAVNTDAQD-LLGL-EA--ENRVLIGQARTKGLGAGANP-ELGAEAAEEV 74 (303)
T ss_pred EEEEEEECchHHHHHHHHHHc-CCCCcc-EEEEECcHHH-HhcC-CC--CcEEecCCccccCCCCCCCH-HHHHHHHHHH
Confidence 588999999999999998773 211112 3333322110 1000 11 12233220 12334 4667888888
Q ss_pred HHHHhcC-CCCCEEEEE
Q psy9348 117 QNFVKHC-TKDDVVLVL 132 (308)
Q Consensus 117 l~~~~~~-~~~Dlvl~L 132 (308)
.+.+++. ..-|.|+++
T Consensus 75 ~~~I~~~le~~D~v~i~ 91 (303)
T cd02191 75 QEAIDNIPVHVDMVFIT 91 (303)
T ss_pred HHHHHHHHcCCCEEEEE
Confidence 8777766 445654444
No 76
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=24.47 E-value=3.6e+02 Score=23.61 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=37.9
Q ss_pred CcEEEEEechh---HHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEecCCCCCC-CHhhHHHHHHHHH
Q psy9348 43 NNVYLIGFGKA---VLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLP-DEASCQNTQLIQN 118 (308)
Q Consensus 43 ~~i~vvg~GKA---a~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~P-d~~s~~Aa~~il~ 118 (308)
++++|+|.|=. +......+.+.+|- -++.++.++... ..+++. .||.. .+-+...++.-.+
T Consensus 29 RPvIivG~ga~~~~a~e~l~~laEklgi----PVvtT~~~~~~~------~~kgv~-----~~~~~lg~~g~~~~~p~~e 93 (162)
T TIGR00315 29 RPLLIVGPENLEDEEKELIVKFIEKFDL----PVVATADTYRAL------IEAGIE-----SEEMNLHEITQFLADPSWE 93 (162)
T ss_pred CcEEEECCCcCcccHHHHHHHHHHHHCC----CEEEcCcccccc------ccCCee-----cCCCCHHHHHHhccCchhh
Confidence 48888888764 33334444444433 356676554210 012232 14411 1333334444445
Q ss_pred HHhcCCCCCEEEEE
Q psy9348 119 FVKHCTKDDVVLVL 132 (308)
Q Consensus 119 ~~~~~~~~Dlvl~L 132 (308)
.+..-++.|+|||+
T Consensus 94 ~~~g~g~~Dlvlfv 107 (162)
T TIGR00315 94 GFDGEGNYDLVLFL 107 (162)
T ss_pred hccCCCCcCEEEEe
Confidence 55555788888887
No 77
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=23.89 E-value=2.6e+02 Score=25.60 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=23.5
Q ss_pred hcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHH
Q psy9348 121 KHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKEL 170 (308)
Q Consensus 121 ~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~Ei 170 (308)
..++++|++| +||-+|. -++..++.+..-+.|++|--|
T Consensus 171 ~~~~~~D~vI-~iS~sG~-----------t~~~~~~~~~ak~~g~~vI~I 208 (284)
T PRK11302 171 MNSSDGDVVV-LISHTGR-----------TKSLVELAQLARENGATVIAI 208 (284)
T ss_pred HhCCCCCEEE-EEeCCCC-----------CHHHHHHHHHHHHcCCeEEEE
Confidence 4456777666 4555554 145666777777788776444
No 78
>PRK04964 hypothetical protein; Provisional
Probab=23.87 E-value=85 Score=23.49 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=28.1
Q ss_pred CccccCcccCCCCCHHHHHHHHHHhCCCccchHHHHHH
Q psy9348 208 QDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSVMTI 245 (308)
Q Consensus 208 ~~IaSGPt~pd~~t~~da~~il~~y~l~~~lp~~v~~~ 245 (308)
..||||-.-+-|....=+++.|+..--.+.||++||+.
T Consensus 13 a~IgSGd~gYiP~Ai~ca~k~L~~IAad~~Lp~~vRe~ 50 (66)
T PRK04964 13 AEIGSGDLGYVPDALGCVLKALNEIAADEALPESVREK 50 (66)
T ss_pred HHhcCCccccCcHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 35888877666555666778888877778888888764
No 79
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=23.65 E-value=4.6e+02 Score=22.29 Aligned_cols=48 Identities=8% Similarity=0.047 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcChhhHHHhhcccccceeeeecceecccCcEEEEEechhHHHHHHHHHHHh
Q psy9348 5 KLIYEAAVSAVNGQNLIQANVRLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMF 65 (308)
Q Consensus 5 ~~i~~aav~av~P~~~v~~~l~~~~~~L~v~~~~~~l~~~i~vvg~GKAa~~MA~a~~~~l 65 (308)
.+-++...+..++... .+.+..-. -.++||++|.|. +..+|+.+...+
T Consensus 5 ~~~l~~t~~~l~~~~~-~~~~~~l~-----------~a~~I~i~G~G~-S~~~A~~~~~~l 52 (179)
T TIGR03127 5 LDEISQVASRIDEEEL-DKLADKII-----------KAKRIFVAGAGR-SGLVGKAFAMRL 52 (179)
T ss_pred HHHHHHHHHhCCHHHH-HHHHHHHH-----------hCCEEEEEecCH-HHHHHHHHHHHH
Confidence 3455666777776543 33332211 135999999995 467888887766
No 80
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=23.59 E-value=3.1e+02 Score=25.77 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=21.5
Q ss_pred cCCeEEEEEEecCCCCCCCccccCcccCCCCCHHHHHHHHHHhCC
Q psy9348 190 YPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGL 234 (308)
Q Consensus 190 ~pa~v~sLilSDV~Gd~l~~IaSGPt~pd~~t~~da~~il~~y~l 234 (308)
.+.+.+.|-+-| || ++......+.+|++|++
T Consensus 82 ~~~k~VaLTFDd-----------g~---~~~~t~~iL~iLkk~~v 112 (268)
T TIGR02873 82 PEKPMVALLINV-----------AW---GNEYLPEILQILKKHDV 112 (268)
T ss_pred CCCCEEEEEEeC-----------CC---CcchHHHHHHHHHHCCC
Confidence 356788888866 22 11234689999999997
No 81
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=23.58 E-value=1.3e+02 Score=23.52 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=29.1
Q ss_pred HHHHHHHccCCCCCCCCCCCCeeEEEEechHHHHHHHHHHHHHCCCcEEEcCC
Q psy9348 240 KSVMTILSHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSS 292 (308)
Q Consensus 240 ~~v~~~L~~~~~~~~~~~~~~~~~~iig~n~~al~aA~~~A~~~G~~~~il~~ 292 (308)
..|...|++....++ .-..+.+++.-.+..-+++++..+.++||.+.....
T Consensus 7 ~~vl~~L~~~Gddl~--~~r~ieh~~~f~~~~~~~~f~~~~~~~g~~v~~~~~ 57 (104)
T PF06877_consen 7 REVLEALEEDGDDLS--KPRPIEHWFYFEDEEDAEKFAEELEKLGYEVESAEE 57 (104)
T ss_dssp HHHHHHHHHHT--TT--S-EEEEEEEEES-HHHHHHHHHHHHHHS---B----
T ss_pred HHHHHHHHhcCCCCC--CCeEEEEEEEeCCHHHHHHHHHHHHHCCCEEEEeec
Confidence 345555554322222 123578889999999999999999999999766543
No 82
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=23.55 E-value=2.8e+02 Score=27.56 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=58.2
Q ss_pred CcEEEEEechhHHHHHHHHHHHhc-ccccceEEEecCCCccccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHh
Q psy9348 43 NNVYLIGFGKAVLGMAVEIEAMFR-PQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVK 121 (308)
Q Consensus 43 ~~i~vvg~GKAa~~MA~a~~~~lg-~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~ 121 (308)
.++.|+|.|.++..+++.+.+.-. ..-.-|++--. +... ..+. +.|+ -.+ .+++.++++
T Consensus 126 ~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd~------------~~~~-~~i~--g~pV--lg~---~~~l~~~i~ 185 (445)
T TIGR03025 126 RRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDDR------------PSDR-VEVA--GLPV--LGK---LDDLVELVR 185 (445)
T ss_pred CcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeCC------------cccc-cccC--CCcc--cCC---HHHHHHHHH
Confidence 489999999999999888875321 11122444211 1111 1122 1333 222 245778888
Q ss_pred cCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHH
Q psy9348 122 HCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVR 174 (308)
Q Consensus 122 ~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VR 174 (308)
+.+-+.+++. .| ..+-++..++.+.+.+.|.++..+-.++
T Consensus 186 ~~~id~ViIa-----------~p--~~~~~~~~~ll~~~~~~gv~V~~vP~~~ 225 (445)
T TIGR03025 186 AHRVDEVIIA-----------LP--LSEEARILELLLQLRDLGVDVRLVPDLF 225 (445)
T ss_pred hCCCCEEEEe-----------cC--cccHHHHHHHHHHHHhcCCEEEEeCchh
Confidence 8776665543 23 3445778889999999998666444444
No 83
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=23.08 E-value=4.2e+02 Score=24.76 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=47.2
Q ss_pred CCC-CCHhhHHHHHHHHHHHhc-CCCCCEEEEEEeCCccccccCCCCC-CCHHHHHHHHHHHHhCCCChHHHHHH
Q psy9348 102 NNL-PDEASCQNTQLIQNFVKH-CTKDDVVLVLISGGGSACLSSPKSP-LSLEDKLKTIKLLVQSGANIKELNKV 173 (308)
Q Consensus 102 HP~-Pd~~s~~Aa~~il~~~~~-~~~~Dlvl~LISGGgSALl~~P~~g-itLedk~~~~~~Ll~sGA~I~EiN~V 173 (308)
.|. |-++..+-++.|-+++++ .+.+.-|+++-|||-|==+..|..+ +. ++.-+....++++| +..++-..
T Consensus 144 ~p~~~~~~~~~lG~al~~~i~~~~~~d~rV~iiaSGgLSH~l~~~~~~~~~-~efD~~i~~~l~~g-d~~~L~~~ 216 (268)
T cd07367 144 DPAPSPRRCWALGKVLAQYVEKRRPAGERVAVIAAGGLSHWLGVPRHGEVN-EAFDRMFLDLLEGG-NGERLAGM 216 (268)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcccccCCCCCCcccccC-HHHHHHHHHHHHcC-CHHHHHhC
Confidence 466 455778899999999987 3456779999999999887655444 32 44555555556666 55554433
No 84
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.81 E-value=1.3e+02 Score=26.19 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=27.8
Q ss_pred eeEEEEec--hHHHHHHHHHHHHHCCCcEEEcCCCccc
Q psy9348 261 VHNHIIGN--NRAALLGAKWKAESLGFQTVILSSDIEG 296 (308)
Q Consensus 261 ~~~~iig~--n~~al~aA~~~A~~~G~~~~il~~~l~G 296 (308)
+.++++.. ...++++.+..|..+||++.++.+...+
T Consensus 133 i~~l~v~G~~td~CV~~T~~~A~~~gy~v~v~~da~~~ 170 (205)
T COG1335 133 IDTVVVCGIATDICVLATARDAFDLGYQVTLVEDATAG 170 (205)
T ss_pred CCEEEEeeeehhHHHHHHHHHHHHCCCeEEEehhhccc
Confidence 44455544 6688999999999999999999776644
No 85
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=22.77 E-value=1.9e+02 Score=24.84 Aligned_cols=115 Identities=15% Similarity=0.219 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcChhhHHHhhcccccceeeeecceecccCcEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCcc
Q psy9348 3 EIKLIYEAAVSAVNGQNLIQANVRLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVG 82 (308)
Q Consensus 3 ~~~~i~~aav~av~P~~~v~~~l~~~~~~L~v~~~~~~l~~~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~ 82 (308)
...+-++...+..++..+- +.+..- .-.++||++|.|.. ..+|+.+...|- ++ |.
T Consensus 6 ~~~~~l~~t~~~l~~~~l~-~~~~~i-----------~~a~~I~i~G~G~S-~~~A~~~~~~l~-~~--g~--------- 60 (179)
T cd05005 6 LILEEIENVADKIDEEELD-KLISAI-----------LNAKRIFVYGAGRS-GLVAKAFAMRLM-HL--GL--------- 60 (179)
T ss_pred HHHHHHHHHHHhcCHHHHH-HHHHHH-----------HhCCeEEEEecChh-HHHHHHHHHHHH-hC--CC---------
Confidence 3344566677777766543 322211 11359999999965 578888777662 11 10
Q ss_pred ccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHh
Q psy9348 83 ILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQ 162 (308)
Q Consensus 83 ~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~ 162 (308)
++.++. .+ ....++++|++|+ ||-.|. -.+..++.+..-+
T Consensus 61 ----------~~~~~~---~~---------------~~~~~~~~D~vI~-iS~sG~-----------t~~~i~~~~~ak~ 100 (179)
T cd05005 61 ----------NVYVVG---ET---------------TTPAIGPGDLLIA-ISGSGE-----------TSSVVNAAEKAKK 100 (179)
T ss_pred ----------eEEEeC---CC---------------CCCCCCCCCEEEE-EcCCCC-----------cHHHHHHHHHHHH
Confidence 111111 00 0235688888755 454443 2567778888888
Q ss_pred CCCChHHHHHHHHhhcccccchHhhhh
Q psy9348 163 SGANIKELNKVRKKLSDVKGGQLAEIV 189 (308)
Q Consensus 163 sGA~I~EiN~VRkhLS~vKGG~La~~~ 189 (308)
.|++|- -+..-.+..|++.+
T Consensus 101 ~g~~iI-------~IT~~~~s~la~~a 120 (179)
T cd05005 101 AGAKVV-------LITSNPDSPLAKLA 120 (179)
T ss_pred CCCeEE-------EEECCCCCchHHhC
Confidence 888762 34555667777654
No 86
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=22.64 E-value=5.9e+02 Score=24.12 Aligned_cols=125 Identities=16% Similarity=0.165 Sum_probs=79.1
Q ss_pred cceeeeecceecccCcEEEEEechhH-HHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEecCCCCCCCH
Q psy9348 29 KNKLIIRDQTVLIKNNVYLIGFGKAV-LGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDE 107 (308)
Q Consensus 29 ~~~L~v~~~~~~l~~~i~vvg~GKAa-~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~ 107 (308)
++.|+|+|++|+ .-+++|-||.. ...-+.+.+.-|..+. .+-+-.......... .-..-++-. + -+.+|+.
T Consensus 5 ~d~l~i~g~~f~---SRLllGTgky~s~~~~~~av~asg~~iv-TvAlRR~~~~~~~~~--~~l~~l~~~-~-~~~LPNT 76 (262)
T COG2022 5 DDMLTIAGKTFD---SRLLLGTGKYPSPAVLAEAVRASGSEIV-TVALRRVNATRPGGD--GILDLLIPL-G-VTLLPNT 76 (262)
T ss_pred ccceeecCeeee---eeEEEecCCCCCHHHHHHHHHhcCCceE-EEEEEeecccCCCcc--hHHHHhhhc-C-cEeCCCc
Confidence 456899999986 33589999998 5544555555665543 222222211000000 000111111 1 4677887
Q ss_pred hhHHHHHHH---HHHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCCh
Q psy9348 108 ASCQNTQLI---QNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANI 167 (308)
Q Consensus 108 ~s~~Aa~~i---l~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I 167 (308)
.+..-+++. -++.+++...|.+=+=+.|----|++-| -+..+..+.|.+-|...
T Consensus 77 aGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~------~etl~Aae~Lv~eGF~V 133 (262)
T COG2022 77 AGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDP------IETLKAAEQLVKEGFVV 133 (262)
T ss_pred cccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCCh------HHHHHHHHHHHhCCCEE
Confidence 776666644 4667888889999999999999999988 46678889999999754
No 87
>PF09675 Chlamy_scaf: Chlamydia-phage Chp2 scaffold (Chlamy_scaf); InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Vp3. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=22.61 E-value=50 Score=27.40 Aligned_cols=31 Identities=6% Similarity=0.105 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHH-hCCCccchHHHHHHHcc
Q psy9348 218 NEDLWSDARDIVIK-YGLQNKVSKSVMTILSH 248 (308)
Q Consensus 218 d~~t~~da~~il~~-y~l~~~lp~~v~~~L~~ 248 (308)
++-.|++|+.++.+ +.+.+.||.+||+.+..
T Consensus 29 ~~~DyqeAln~V~e~~eaFd~LPa~iRe~F~N 60 (114)
T PF09675_consen 29 SPFDYQEALNMVAEANEAFDELPAHIRERFNN 60 (114)
T ss_pred CHHhHHHHHHHHHHHHHHHHHchHHHHHHhCC
Confidence 34459999998865 77889999999999976
No 88
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=22.60 E-value=1.4e+02 Score=25.70 Aligned_cols=36 Identities=14% Similarity=0.298 Sum_probs=26.4
Q ss_pred eeEEEEec--hHHHHHHHHHHHHHCCCcEEEcCCCccc
Q psy9348 261 VHNHIIGN--NRAALLGAKWKAESLGFQTVILSSDIEG 296 (308)
Q Consensus 261 ~~~~iig~--n~~al~aA~~~A~~~G~~~~il~~~l~G 296 (308)
+++++|.. ....+..-+..|.++||++++++++...
T Consensus 114 i~~vvi~G~~t~~CV~~Ta~~A~~~Gy~v~vv~Da~a~ 151 (179)
T cd01015 114 VDTLIVAGCSTSGCIRATAVDAMQHGFRPIVVRECVGD 151 (179)
T ss_pred CCEEEEeeecccHhHHHHHHHHHHCCCeEEEeeccccC
Confidence 33444444 4566677778899999999999988765
No 89
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=22.59 E-value=74 Score=24.08 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=17.9
Q ss_pred cEEEEEechhHHHHHHHHHHH
Q psy9348 44 NVYLIGFGKAVLGMAVEIEAM 64 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~~ 64 (308)
+|-++|+|+-+..|++.+.+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~ 21 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS 21 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT
T ss_pred CEEEECCCHHHHHHHHHHHHC
Confidence 477899999999999998764
No 90
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=22.55 E-value=2.8e+02 Score=22.91 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=13.9
Q ss_pred HHHHHHHHhcCCCCCEEEEEEeCCcc
Q psy9348 113 TQLIQNFVKHCTKDDVVLVLISGGGS 138 (308)
Q Consensus 113 a~~il~~~~~~~~~Dlvl~LISGGgS 138 (308)
++.+++. ....++|+||++=+.|-|
T Consensus 92 ~~~~~~~-~~~~~gDvli~iS~SG~s 116 (138)
T PF13580_consen 92 ARQLLAL-YDIRPGDVLIVISNSGNS 116 (138)
T ss_dssp HHHHHHH-TT--TT-EEEEEESSS-S
T ss_pred HHHHHHH-cCCCCCCEEEEECCCCCC
Confidence 4445444 337999998887777777
No 91
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=22.51 E-value=66 Score=19.68 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=13.3
Q ss_pred HHHHHHHHhCCCChHH
Q psy9348 154 LKTIKLLVQSGANIKE 169 (308)
Q Consensus 154 ~~~~~~Ll~sGA~I~E 169 (308)
.++.+.|++.|++|..
T Consensus 15 ~~~v~~Ll~~ga~~~~ 30 (33)
T PF00023_consen 15 PDIVKLLLKHGADINA 30 (33)
T ss_dssp HHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHCcCCCCC
Confidence 5688999999999863
No 92
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.29 E-value=3.7e+02 Score=25.89 Aligned_cols=52 Identities=8% Similarity=-0.118 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHhCCCccchHHHHHHHccCCCCCCCCCCCCeeEEEEechHHHHHHHHHHHHHCCCcEEEcCC
Q psy9348 219 EDLWSDARDIVIKYGLQNKVSKSVMTILSHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSS 292 (308)
Q Consensus 219 ~~t~~da~~il~~y~l~~~lp~~v~~~L~~~~~~~~~~~~~~~~~~iig~n~~al~aA~~~A~~~G~~~~il~~ 292 (308)
|-|..-++++|+.|++ .+..-+-.+||.+...=..++....+.||++.++.+
T Consensus 139 PcTp~ai~~ll~~~~i----------------------~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~ 190 (296)
T PRK14188 139 PCTPLGCMMLLRRVHG----------------------DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHS 190 (296)
T ss_pred CCCHHHHHHHHHHhCC----------------------CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECC
Confidence 4578888999999886 123345578895555555555666678999999853
No 93
>KOG1257|consensus
Probab=22.28 E-value=2.2e+02 Score=29.86 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=19.1
Q ss_pred CcEEEEEechhHHHHHHHHHHHh
Q psy9348 43 NNVYLIGFGKAVLGMAVEIEAMF 65 (308)
Q Consensus 43 ~~i~vvg~GKAa~~MA~a~~~~l 65 (308)
+++.++|+|-|+.+||.-+...+
T Consensus 311 ~~ilf~GAG~A~~GIA~l~v~~m 333 (582)
T KOG1257|consen 311 HVILFLGAGEAALGIANLIVMAM 333 (582)
T ss_pred ceEEEecCchHHhhHHHHHHHHH
Confidence 38999999999999998865543
No 94
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=22.24 E-value=1.3e+02 Score=20.75 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=25.4
Q ss_pred CCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCC
Q psy9348 123 CTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGAN 166 (308)
Q Consensus 123 ~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~ 166 (308)
+.+++.|++-+|| ..|+|+|+.-.+-.+.+.=++
T Consensus 2 l~pG~~V~CAVTg----------~~IpLd~LrYWsv~~QEaYa~ 35 (42)
T PF09866_consen 2 LSPGSFVRCAVTG----------QPIPLDELRYWSVDRQEAYAS 35 (42)
T ss_pred ccCCCEEEEEeeC----------CcccHHHhccCChhhhhcccC
Confidence 4688999999998 578899988776555544333
No 95
>PRK13367 protocatechuate 4,5-dioxygenase; Provisional
Probab=22.02 E-value=3.3e+02 Score=27.69 Aligned_cols=44 Identities=16% Similarity=0.223 Sum_probs=36.6
Q ss_pred CCCCC-CHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCC
Q psy9348 101 RNNLP-DEASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSP 144 (308)
Q Consensus 101 ~HP~P-d~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P 144 (308)
..|+| -++..+=++.|-+++++.+++.-|+++-|||-|==|.-+
T Consensus 154 q~Plps~~r~~~LG~AL~~aie~~~~d~rVlIIgSGgLSH~L~~~ 198 (420)
T PRK13367 154 QFPIPSARRCYKLGQALRRAIESYPEDLKVAIVATGGLSHQVHGE 198 (420)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHhcCcCCCEEEEEeCccccCCCCC
Confidence 37887 567788999999999988878889999999999877543
No 96
>PRK13937 phosphoheptose isomerase; Provisional
Probab=21.88 E-value=3.2e+02 Score=23.91 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=22.2
Q ss_pred hcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCCh
Q psy9348 121 KHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANI 167 (308)
Q Consensus 121 ~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I 167 (308)
..++++|++|+ ||..|.. .+..+..+...+.|+++
T Consensus 102 ~~~~~~Dl~i~-iS~sG~t-----------~~~~~~~~~ak~~g~~~ 136 (188)
T PRK13937 102 ALGRPGDVLIG-ISTSGNS-----------PNVLAALEKARELGMKT 136 (188)
T ss_pred hhCCCCCEEEE-EeCCCCc-----------HHHHHHHHHHHHCCCeE
Confidence 35688887655 5555432 56677777777777655
No 97
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=21.87 E-value=1.2e+02 Score=29.53 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=44.4
Q ss_pred CC-CCC-HhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHH
Q psy9348 102 NN-LPD-EASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVR 174 (308)
Q Consensus 102 HP-~Pd-~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VR 174 (308)
+| +|+ +...+=++.|-+++++.+.+.-|+|+-|||-|==+.. ++.-+..-.++++| +..++..+-
T Consensus 209 ~p~~ps~~r~y~lG~aL~~ai~~~~~d~rV~IIaSGgLSH~l~~-------~eFD~~~l~~l~~g-D~~~L~~~~ 275 (328)
T cd07366 209 PPNQPSARRCFEFGRAVARAIRSWPGDARVGVIASGGLSHFVID-------EEFDRRILDALRNR-DAEFLSSLP 275 (328)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCCh-------HHHHHHHHHHHHcC-CHHHHHcCC
Confidence 44 444 5788999999999999877889999999999976511 44444444444554 555444433
No 98
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional
Probab=21.85 E-value=3.1e+02 Score=26.49 Aligned_cols=69 Identities=23% Similarity=0.214 Sum_probs=44.4
Q ss_pred CCCCC-HhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHH
Q psy9348 102 NNLPD-EASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRK 175 (308)
Q Consensus 102 HP~Pd-~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRk 175 (308)
+|.|+ +...+-++.|-+.++++.+ -|+|+-|||=|==.+.|.- .-.|. .+.+.|++-...=.+.+.+|+
T Consensus 143 ~p~~s~~r~~~lG~aI~~ai~~~d~--rVlvIaSGdLSH~~~~~~~--~~~d~-~~~erl~~~~~~~~~~~~~~~ 212 (313)
T PRK13370 143 APLPPFRRVRLLGEAVGRFLATLDK--RVLFLGSGGLSHDPPVPEL--ATADP-EVRERLIAGRNPTPEERAARQ 212 (313)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCC--CEEEEEeCCCcCCCchHhH--hhccH-HHHHHHHccCCccHHHHHHHH
Confidence 56665 6788888999999998843 3999999999987655532 11222 445555544434444455554
No 99
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=21.77 E-value=4.3e+02 Score=26.15 Aligned_cols=99 Identities=20% Similarity=0.224 Sum_probs=60.5
Q ss_pred CCCCHhhHHHHHHHHH-------------------HHh-cCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHh
Q psy9348 103 NLPDEASCQNTQLIQN-------------------FVK-HCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQ 162 (308)
Q Consensus 103 P~Pd~~s~~Aa~~il~-------------------~~~-~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~ 162 (308)
-+||++.++|.+.+.+ +++ .+++++.+++++.++|--.+.-..+ | +++.+
T Consensus 248 ~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~~~~~~~~~~~~~~vv~~~~d~g~~y~~~~~~-----~-----~w~~~ 317 (454)
T TIGR01137 248 KTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKAAEDELTEDQVIVVLLPDSIRNYMTKFLN-----D-----EWMKD 317 (454)
T ss_pred EECHHHHHHHHHHHHHHhCccCcHHHHHHHHHHHHHHHhhcCCCCEEEEEECCCCccccCcccC-----h-----HHHHh
Confidence 5788888888887765 344 4677889999999999777765433 2 34555
Q ss_pred CCCChHHHHHHHHhhcccccchHhhhhcCCeEEEEEEecCCCCCCCccccCcccCCCCCHHHHHHHHHHhCC
Q psy9348 163 SGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGL 234 (308)
Q Consensus 163 sGA~I~EiN~VRkhLS~vKGG~La~~~~pa~v~sLilSDV~Gd~l~~IaSGPt~pd~~t~~da~~il~~y~l 234 (308)
.|....|-=+.++-|++++=+.+.. . .=.+++..+|.+++++.+.+.+.
T Consensus 318 ~~~~~~~~~~~~~~l~~~~v~~im~-----------------~------~~~~v~~~~tl~ea~~~m~~~~~ 366 (454)
T TIGR01137 318 NGFLDDEVLTVFDVLKNATVKDLHL-----------------P------APVTVHPTETVGDAIEILREYGF 366 (454)
T ss_pred cCCcccccccHHHHhccCCHHHhCc-----------------C------CCeEECCCCcHHHHHHHHHHcCC
Confidence 5543222222222344444333321 1 12456666789999999987664
No 100
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=21.37 E-value=1.3e+02 Score=23.23 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHHHHCCCcEEE
Q psy9348 268 NNRAALLGAKWKAESLGFQTVI 289 (308)
Q Consensus 268 ~n~~al~aA~~~A~~~G~~~~i 289 (308)
+.++|++.+.++|+++|-+.+|
T Consensus 26 d~d~Al~eM~e~A~~lGAnAVV 47 (74)
T TIGR03884 26 NVDEIVENLREKVKAKGGMGLI 47 (74)
T ss_pred CHHHHHHHHHHHHHHcCCCEEE
Confidence 5789999999999999999865
No 101
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=21.09 E-value=1e+02 Score=28.55 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=30.2
Q ss_pred CCCCHhhHHHHHHHHHHHhc-CC-CCCEEEEEEeCCccc
Q psy9348 103 NLPDEASCQNTQLIQNFVKH-CT-KDDVVLVLISGGGSA 139 (308)
Q Consensus 103 P~Pd~~s~~Aa~~il~~~~~-~~-~~Dlvl~LISGGgSA 139 (308)
+-+++-+-.+++.|.+.+++ .. +++.+.+.+|||.|-
T Consensus 7 ~~~~~l~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstP 45 (259)
T TIGR00502 7 QTYEELSKWAARHIANRINEFKPTAARPFVLGLPTGGTP 45 (259)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCccccCceEEEEcCCCCh
Confidence 34667778999999999999 44 378899999999874
No 102
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=21.02 E-value=1.3e+02 Score=31.31 Aligned_cols=80 Identities=24% Similarity=0.245 Sum_probs=55.2
Q ss_pred HHHHHHHHHhCCC---ChH---------------HHHHHHHhhcccccchHhhhhc----------CCeEEEEEEecCCC
Q psy9348 153 KLKTIKLLVQSGA---NIK---------------ELNKVRKKLSDVKGGQLAEIVY----------PATLVSLIISDIVG 204 (308)
Q Consensus 153 k~~~~~~Ll~sGA---~I~---------------EiN~VRkhLS~vKGG~La~~~~----------pa~v~sLilSDV~G 204 (308)
..++++.+.+.|| .|+ ++--+.-|+.+|+.-|+++... -++--+||-|||--
T Consensus 167 v~~~vk~~ieaGAaGI~IEDq~~~~KkcGh~~gk~Lvp~~e~v~RI~AAr~Aad~~g~d~vI~ARTDA~~A~LitS~iD~ 246 (527)
T TIGR01346 167 VFKLQKAFIERGAAGVHWEDQLSSEKKCGHMAGKVLIPVQEHVNRLVAARLAADIMGVPTLVVARTDAEAATLITSDVDE 246 (527)
T ss_pred HHHHHHHHHHcCCeEEEEEcCCCcccccCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEEecCccccccccccCCc
Confidence 5678888888877 442 2445556777777777764321 22334799999998
Q ss_pred CCCCccccCcccCCCCCHHHHHHHHHHhC
Q psy9348 205 DPLQDIASGPTVLNEDLWSDARDIVIKYG 233 (308)
Q Consensus 205 d~l~~IaSGPt~pd~~t~~da~~il~~y~ 233 (308)
.|=..|. |-|-|+..+..|++.-.+.|+
T Consensus 247 rDh~fI~-G~tn~~~~~l~~~l~~a~a~~ 274 (527)
T TIGR01346 247 RDHPFIT-GATNPNLKPLADVLARAMASG 274 (527)
T ss_pred ccchhhc-CCCCCCCCCHHHHHHHHHHcc
Confidence 8888885 667777778888877776664
No 103
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=20.98 E-value=4.7e+02 Score=22.35 Aligned_cols=67 Identities=22% Similarity=0.341 Sum_probs=42.2
Q ss_pred cEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEecCCCCCCCHhh-HHHHHHHHHHHhc
Q psy9348 44 NVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEAS-CQNTQLIQNFVKH 122 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~~s-~~Aa~~il~~~~~ 122 (308)
.++|++=|+.|.+|-+.++-++|+. .+++.+.- .|++.+ -.=.+.+-+..+.
T Consensus 3 ~iii~tHG~~A~~l~~s~emi~G~q-----------------------~nv~~v~~----~~~~~~~~~l~~~~~~~~~~ 55 (143)
T COG2893 3 GIIIATHGRFAEGLLNSLEMILGEQ-----------------------ENVEAVDF----VPGEDSEDLLTKQIAAAIAA 55 (143)
T ss_pred eEEEEeCHHHHHHHHHHHHHHhCcH-----------------------hceEEEEe----ecCCChHHHHHHHHHHHHhh
Confidence 4789999999999999999999853 23444432 144222 2344555555565
Q ss_pred CCCCCEEEEE--EeCCc
Q psy9348 123 CTKDDVVLVL--ISGGG 137 (308)
Q Consensus 123 ~~~~Dlvl~L--ISGGg 137 (308)
.+.+|=|||| |-||.
T Consensus 56 ~d~~eevl~ltDl~GGS 72 (143)
T COG2893 56 LDSGEGVLFLTDLFGGS 72 (143)
T ss_pred cCCCCcEEEEEecCCCC
Confidence 6554544444 77875
No 104
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=20.94 E-value=1.3e+02 Score=27.20 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=27.7
Q ss_pred eeEEEEec--hHHHHHHHHHHHHHCCCcEEEcCCCccc
Q psy9348 261 VHNHIIGN--NRAALLGAKWKAESLGFQTVILSSDIEG 296 (308)
Q Consensus 261 ~~~~iig~--n~~al~aA~~~A~~~G~~~~il~~~l~G 296 (308)
+++.+|.. ...++.+.+..|-++||++++++++...
T Consensus 151 I~~lvi~Gv~T~~CV~sTar~A~~~Gy~v~vv~Da~a~ 188 (226)
T TIGR03614 151 IRNLVFTGIATNVCVESTLRDGFHLEYFGVVLEDATHQ 188 (226)
T ss_pred CCEEEEeccCccHhHHHHHHHHHHCCCEEEEechhccC
Confidence 44445544 5667778889999999999999988764
No 105
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=20.90 E-value=94 Score=23.25 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=27.0
Q ss_pred CccccCcccCCCCCHHHHHHHHHHhCCCccchHHHHHH
Q psy9348 208 QDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSVMTI 245 (308)
Q Consensus 208 ~~IaSGPt~pd~~t~~da~~il~~y~l~~~lp~~v~~~ 245 (308)
..||||-.-+-|.-..=+++.|+..--.+.||++||+.
T Consensus 13 a~IgSGd~gYiP~Ai~calk~Ln~iAad~~Lp~~vRE~ 50 (66)
T PF06786_consen 13 AQIGSGDQGYIPDAIGCALKTLNDIAADEALPEDVREQ 50 (66)
T ss_pred HHhcCCccccCcHHHHHHHHHHHHHHcccccCHHHHHH
Confidence 34788877655555666777777777777888888764
No 106
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=20.54 E-value=1.7e+02 Score=28.93 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=40.5
Q ss_pred cEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhcC
Q psy9348 44 NVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHC 123 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~ 123 (308)
++.|||.|-.+..||..+.+.+..+..+-. | +. .+..++.+++.+..++|. -+-...+.+.+.+++.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~---~-~~--------~~~~~Vtlv~~~~~ll~~-~~~~~~~~~~~~L~~~ 241 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLN---P-EL--------VEECKVTVLEAGSEVLGS-FDQALRKYGQRRLRRL 241 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhh---h-cc--------cccCEEEEEcCCCccccc-CCHHHHHHHHHHHHHC
Confidence 799999999999999999887643211100 0 00 112357777764466664 2334556666666553
No 107
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=20.50 E-value=49 Score=27.75 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=19.5
Q ss_pred cEEEEEechhHHHHHHHHHHH
Q psy9348 44 NVYLIGFGKAVLGMAVEIEAM 64 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~~ 64 (308)
+|-|||+||.+..++.++.+.
T Consensus 12 ~I~iIGaGrVG~~La~aL~~a 32 (127)
T PF10727_consen 12 KIGIIGAGRVGTALARALARA 32 (127)
T ss_dssp EEEEECTSCCCCHHHHHHHHT
T ss_pred EEEEECCCHHHHHHHHHHHHC
Confidence 899999999999999999874
No 108
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=20.45 E-value=1.3e+02 Score=26.49 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=35.7
Q ss_pred ceEEEecCCCCCCCHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCc-cccccCC
Q psy9348 93 EIEIRECARNNLPDEASCQNTQLIQNFVKHCTKDDVVLVLISGGG-SACLSSP 144 (308)
Q Consensus 93 ~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGg-SALl~~P 144 (308)
+|.|+=| +.+-+|+.-.++|+++=+++.+-+ +.|++||| .-||.+-
T Consensus 2 ~i~V~~~-s~~~~~~~~~~~A~~lG~~la~~g-----~~lV~GGg~~GlM~a~ 48 (178)
T TIGR00730 2 TVCVYCG-SSPGGNAAYKELAAELGAYLAGQG-----WGLVYGGGRVGLMGAI 48 (178)
T ss_pred EEEEECc-CCCCCCcHHHHHHHHHHHHHHHCC-----CEEEECCChHhHHHHH
Confidence 4667765 588899999999999988886643 67899998 6777663
Done!