Query psy9348
Match_columns 308
No_of_seqs 137 out of 604
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 16:48:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x3l_A Hypothetical protein PH 100.0 2.3E-95 8E-100 713.8 34.0 294 2-307 8-306 (440)
2 2b8n_A Glycerate kinase, putat 100.0 6.7E-92 2.3E-96 686.1 32.7 280 2-307 21-301 (429)
3 3lfh_A Manxa, phosphotransfera 76.6 9.4 0.00032 31.3 7.8 98 44-170 5-114 (144)
4 1pdo_A Mannose permease; phosp 72.2 15 0.00051 29.4 7.9 99 44-170 3-113 (135)
5 3gx1_A LIN1832 protein; APC633 69.7 20 0.00068 28.8 8.0 98 44-170 6-115 (130)
6 3sho_A Transcriptional regulat 67.0 50 0.0017 26.9 12.1 94 42-189 39-132 (187)
7 3ipr_A PTS system, IIA compone 66.7 20 0.00069 29.4 7.7 99 44-170 3-118 (150)
8 3bed_A PTS system, IIA compone 61.7 30 0.001 27.8 7.8 96 44-170 7-114 (142)
9 2w6a_A ARF GTPase-activating p 59.6 4.5 0.00016 28.8 1.9 34 146-179 8-41 (63)
10 3mtq_A Putative phosphoenolpyr 58.6 24 0.00082 29.5 6.7 97 44-170 23-130 (159)
11 2kui_A PKNB, serine/threonine- 56.2 7.9 0.00027 34.9 3.6 94 123-235 59-167 (275)
12 3gdw_A Sigma-54 interaction do 56.1 34 0.0012 27.8 7.1 98 44-170 6-117 (139)
13 2kkp_A Phage integrase; SAM-li 51.7 21 0.00071 26.2 4.8 37 143-179 48-84 (117)
14 2khv_A Phage integrase; soluti 50.4 11 0.00037 27.9 3.0 37 142-180 41-77 (106)
15 3trj_A Phosphoheptose isomeras 46.1 1.3E+02 0.0045 25.2 11.0 54 122-194 111-164 (201)
16 1weh_A Conserved hypothetical 45.3 19 0.00064 30.3 3.9 46 93-144 3-48 (171)
17 1m3s_A Hypothetical protein YC 41.2 98 0.0034 25.0 7.8 113 5-189 12-124 (186)
18 2wh0_Q Pkcev3, protein kinase 37.9 15 0.00052 22.0 1.5 13 167-179 15-28 (31)
19 4f6o_A Metacaspase-1; rossmann 37.9 95 0.0032 29.2 7.9 36 103-140 107-142 (350)
20 2kd1_A DNA integration/recombi 36.4 25 0.00084 26.0 3.0 37 143-179 46-82 (118)
21 2kj8_A Putative prophage CPS-5 35.0 42 0.0014 24.9 4.2 35 143-178 45-79 (118)
22 2y8u_A Chitin deacetylase; hyd 34.8 84 0.0029 27.2 6.7 40 180-234 20-59 (230)
23 1t35_A Hypothetical protein YV 33.8 33 0.0011 29.3 3.7 45 93-143 3-48 (191)
24 1b4u_B LIGA, LIGB, protocatech 33.7 58 0.002 29.6 5.6 44 101-144 156-200 (302)
25 3bij_A Uncharacterized protein 33.4 43 0.0015 30.1 4.6 33 105-139 55-87 (285)
26 2q22_A Uncharacterized protein 31.7 44 0.0015 27.6 4.0 73 220-296 10-89 (139)
27 3qua_A Putative uncharacterize 31.7 44 0.0015 28.9 4.2 46 92-144 23-69 (199)
28 2kj5_A Phage integrase; GFT PS 30.9 46 0.0016 24.3 3.7 36 143-179 46-81 (116)
29 2oxo_A Integrase; DNA-binding 30.6 44 0.0015 23.2 3.4 35 143-181 41-75 (103)
30 3py9_A Protein kinase; pasta, 30.3 31 0.001 31.4 3.1 95 123-235 58-167 (294)
31 1tc3_C Protein (TC3 transposas 29.3 95 0.0033 18.6 4.7 35 147-182 5-47 (51)
32 2kj9_A Integrase; DNA_BRE_C su 28.7 43 0.0015 25.1 3.3 37 142-179 49-85 (118)
33 3fwz_A Inner membrane protein 28.6 38 0.0013 26.4 3.1 23 41-63 6-28 (140)
34 1mzh_A Deoxyribose-phosphate a 28.4 8.4 0.00029 33.7 -1.1 70 147-233 128-197 (225)
35 4af8_A Metacaspase MCA2; hydro 28.0 63 0.0021 30.7 4.9 35 103-139 147-181 (367)
36 2a33_A Hypothetical protein; s 27.6 89 0.003 27.2 5.5 45 92-142 14-59 (215)
37 3klj_A NAD(FAD)-dependent dehy 27.3 1.3E+02 0.0043 27.9 6.9 22 43-64 147-168 (385)
38 1zzg_A Glucose-6-phosphate iso 26.4 1.6E+02 0.0055 28.2 7.6 119 43-208 67-189 (415)
39 2q8n_A Glucose-6-phosphate iso 25.8 1.5E+02 0.0051 28.8 7.3 129 43-208 79-212 (460)
40 1wek_A Hypothetical protein TT 25.6 41 0.0014 29.4 3.0 46 93-144 39-84 (217)
41 3men_A Acetylpolyamine aminohy 25.1 1.1E+02 0.0038 28.9 6.0 56 106-164 273-330 (362)
42 1ydh_A AT5G11950; structural g 25.1 70 0.0024 27.9 4.3 47 92-144 10-57 (216)
43 3dfz_A SIRC, precorrin-2 dehyd 24.5 36 0.0012 29.9 2.3 21 44-64 33-53 (223)
44 2iz6_A Molybdenum cofactor car 24.5 78 0.0027 26.7 4.4 45 92-142 14-59 (176)
45 1dcf_A ETR1 protein; beta-alph 24.3 1.7E+02 0.0056 21.5 6.0 59 102-163 58-129 (136)
46 2kkv_A Integrase; protein stru 22.8 52 0.0018 24.4 2.7 35 143-178 46-80 (121)
47 2kuf_A PKNB, serine/threonine- 22.6 1.1E+02 0.0038 23.9 4.8 82 139-235 6-97 (139)
48 2ph5_A Homospermidine synthase 21.8 97 0.0033 30.5 5.0 41 37-77 8-48 (480)
49 2iw0_A Chitin deacetylase; hyd 21.4 1.6E+02 0.0056 25.6 6.1 40 180-234 29-68 (254)
50 3plv_C 66 kDa U4/U6.U5 small n 21.3 55 0.0019 18.4 1.8 14 165-178 2-15 (21)
51 3bej_E Nuclear receptor coacti 20.9 87 0.003 18.3 2.7 24 143-166 1-24 (26)
52 1jeo_A MJ1247, hypothetical pr 20.6 2.4E+02 0.0083 22.4 6.7 49 121-189 78-126 (180)
53 3rjs_A Dynein light chain moto 20.3 55 0.0019 24.5 2.3 38 224-269 24-61 (89)
54 3sbx_A Putative uncharacterize 20.1 93 0.0032 26.6 4.0 46 92-144 14-60 (189)
55 3hn6_A Glucosamine-6-phosphate 20.1 73 0.0025 28.9 3.5 44 93-139 21-66 (289)
56 2lci_A Protein OR36; structura 20.0 1.4E+02 0.0049 23.1 4.6 42 263-304 54-96 (134)
No 1
>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.3e-95 Score=713.77 Aligned_cols=294 Identities=33% Similarity=0.484 Sum_probs=278.7
Q ss_pred HHHHHHHHHHHHhcChhhHHHhhcccccceeeeecceeccc-CcEEEEEechhHHHHHHHHHHHhcccccceEEEecCCC
Q psy9348 2 QEIKLIYEAAVSAVNGQNLIQANVRLEKNKLIIRDQTVLIK-NNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGS 80 (308)
Q Consensus 2 ~~~~~i~~aav~av~P~~~v~~~l~~~~~~L~v~~~~~~l~-~~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~ 80 (308)
+++++||++||++++|++++++++...++.|+|+++.| +. +|+||||||||+++||++++++| + +.+|+||||||+
T Consensus 8 ~~l~~if~aav~a~~P~~~v~~~l~~~~~~L~v~~~~~-l~~gr~~vvg~GKAa~~MA~a~e~~~-~-~~~G~Vvt~~g~ 84 (440)
T 1x3l_A 8 EIGLRLVGEAIKAADPYRAVLNAVKVSDDKIIVQGKEF-EIKGKVYVIALGKAACEMARAIEDIL-D-VEDGVAVTKYGY 84 (440)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHEEECSSEEEETTEEE-ECCSCEEEEEESTTHHHHHHHHHHHS-C-CSEEEEEEETTC
T ss_pred HHHHHHHHHHHHhhCHHHHHHHhccccccccccccccc-cCCCCEEEEEEcHHHHHHHHHHHHHh-C-cCceEEEECCCC
Confidence 57899999999999999999999998889999999999 55 69999999999999999999999 4 888999999998
Q ss_pred ccccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHH
Q psy9348 81 VGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLL 160 (308)
Q Consensus 81 ~~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~L 160 (308)
. .+.++|+|+|+ +||+||++|++|+++|++++++++++|+|||||||||||||++|.+||||+||+++|++|
T Consensus 85 ~-------~~~~~i~v~eA-~HPvPD~~s~~Aa~~il~~~~~l~~~Dlvl~LISGGGSALl~~P~~gitL~dk~~~~~~L 156 (440)
T 1x3l_A 85 G-------KELKRIKVIEA-GHPIPDEKSILGAKEALSILNRARENDIVFILISGGGSALFELPEEGISLEDLKLTTDLL 156 (440)
T ss_dssp C-------CCCSSSEEEEE-CSSSCCHHHHHHHHHHHHHHHHCCTTSEEEEEECTTHHHHSCCBCTTCCHHHHHHHHHHH
T ss_pred C-------CCCCCeEEEEC-CCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEEecCcHHHhhhcCCCCCCHHHHHHHHHHH
Confidence 6 35578999997 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHhhcccccchHhhhhcCCeEEEEEEecCCCCCCCccccCcccCCCCCHHHHHHHHHHhCCCccchH
Q psy9348 161 VQSGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSK 240 (308)
Q Consensus 161 l~sGA~I~EiN~VRkhLS~vKGG~La~~~~pa~v~sLilSDV~Gd~l~~IaSGPt~pd~~t~~da~~il~~y~l~~~lp~ 240 (308)
++|||+|+|||+||||||+|||||||+++ |+++++|||||||||||++||||||+||+||++||++||+||+||+++|+
T Consensus 157 L~sGA~I~EiN~VRKhLS~iKGGrLA~~a-pA~vvtLiiSDV~GDdl~~IASGPTvpd~tt~~dA~~il~ry~l~~~lp~ 235 (440)
T 1x3l_A 157 LKSGAKIHEINTVRKHISKVKGGKLAKMI-KGTGIVLIISDVVGDNLEAIASGPTVKDPTTFEDAKRILELYDIWEKVPE 235 (440)
T ss_dssp HHTCCCHHHHHHHHHTTBSSTTTHHHHTC-SSEEEEEEECCSTTCCTTTGGGCTTSCCCCCHHHHHHHHHHTTCTTTSCH
T ss_pred HHcCCCHHHHHHHHHHHhhccchHHHHhC-CCcEEEEEEecCCCCChhheecCCcCCCCCCHHHHHHHHHHhCCcccCCH
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccC---C-CCCCCCCCCCeeEEEEechHHHHHHHHHHHHHCCCcEEEcCCCccchHHHHHHHhhc
Q psy9348 241 SVMTILSHE---T-PHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDICRGYVD 307 (308)
Q Consensus 241 ~v~~~L~~~---~-~~~~~~~~~~~~~~iig~n~~al~aA~~~A~~~G~~~~il~~~l~Gea~~va~~~a~ 307 (308)
+|+++|+++ . +++..+.|.+++|+|||||..++++|+++|+++||++++++++++|||||+|++|+.
T Consensus 236 ~v~~~L~~~~~g~~~etpk~~~~~~~~~iIasn~~al~aAa~~A~~~G~~~~il~~~l~Geareva~~~a~ 306 (440)
T 1x3l_A 236 SVRLHIERGLRGEVEETLKEDLPNVHNFLIASNSISCEAIAREAQRLGFKAYIMTTTLEGEAKDAGLFIGS 306 (440)
T ss_dssp HHHHHHHHHHHTSSCCSCCSCCTTEEEEEEECHHHHHHHHHHHHHHTTCEEEEEEEEECSBHHHHHHHHHH
T ss_pred HHHHHHhccccccccCCCCccccCceEEEECCHHHHHHHHHHHHHHcCCcEEEecCccceeHHHHHHHHHH
Confidence 999999864 1 121113789999999999999999999999999999999999999999999999985
No 2
>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31), structural genomics, center for structural genomics, JCSG; 2.53A {Thermotoga maritima} SCOP: c.118.1.1
Probab=100.00 E-value=6.7e-92 Score=686.09 Aligned_cols=280 Identities=34% Similarity=0.492 Sum_probs=263.1
Q ss_pred HHHHHHHHHHHHhcChhhHHHhhcccccceeeeecceecccCcEEEEEechhHHHHHHH-HHHHhcccccceEEEecCCC
Q psy9348 2 QEIKLIYEAAVSAVNGQNLIQANVRLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVE-IEAMFRPQRLKGILSVPFGS 80 (308)
Q Consensus 2 ~~~~~i~~aav~av~P~~~v~~~l~~~~~~L~v~~~~~~l~~~i~vvg~GKAa~~MA~a-~~~~lg~~i~~G~Vv~p~g~ 80 (308)
+.+++||++||++++|++++++++...+ .+|+|||||||||++||++ ++++|+ ++.+|+||||||+
T Consensus 21 ~~l~~if~aav~a~~P~~~v~~~l~~~~------------~gr~~vvg~GKAa~~MA~aa~e~~~~-~~~~GlVvt~~g~ 87 (429)
T 2b8n_A 21 KLAIEIVKKSIEAVFPDRAVKETLPKLN------------LDRVILVAVGKAAWRMAKAAYEVLGK-KIRKGVVVTKYGH 87 (429)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHTTHHHHC------------CCSEEEEEESTTHHHHHHHHHHHHGG-GEEEEEEEEETTC
T ss_pred HHHHHHHHHHHHhhCHHHHHHHhcCcCC------------CCCEEEEEecHHHHHHHHHHHHHhhc-cCccEEEEECCCc
Confidence 5689999999999999999999985422 3699999999999999999 999994 5788999999998
Q ss_pred ccccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHH
Q psy9348 81 VGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLL 160 (308)
Q Consensus 81 ~~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~L 160 (308)
.. ++.++|+|+|+ +||+||++|++|+++|++++++++++|+||||||||||||||+|.+||||+||+++|++|
T Consensus 88 ~~------~~~~~i~v~eA-~HPvPD~~s~~Aa~~il~l~~~l~~~Dlvl~LISGGGSALl~~P~~gitL~dk~~i~~~L 160 (429)
T 2b8n_A 88 SE------GPIDDFEIYEA-GHPVPDENTIKTTRRVLELVDQLNENDTVLFLLSGGGSSLFELPLEGVSLEEIQKLTSAL 160 (429)
T ss_dssp CC------SCCTTCEEEEE-CSSSCCHHHHHHHHHHHHHHSSCCTTCEEEEEECTTHHHHSCCBCTTCCHHHHHHHHHHH
T ss_pred CC------CCCCceEEEEC-CCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEEecCcHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 62 22578999997 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHhhcccccchHhhhhcCCeEEEEEEecCCCCCCCccccCcccCCCCCHHHHHHHHHHhCCCccchH
Q psy9348 161 VQSGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSK 240 (308)
Q Consensus 161 l~sGA~I~EiN~VRkhLS~vKGG~La~~~~pa~v~sLilSDV~Gd~l~~IaSGPt~pd~~t~~da~~il~~y~l~~~lp~ 240 (308)
|+|||+|+|||+||||||+|||||||++++|+++++|||||||||||++||||||+||+||++||++||+||+| ++|+
T Consensus 161 L~sGA~I~EiN~VRKhLS~iKGGrLA~~a~pA~vvtLiiSDV~GDdl~~IASGPTvpd~tT~~dA~~il~ry~l--~lp~ 238 (429)
T 2b8n_A 161 LKSGASIEEINTVRKHLSQVKGGRFAERVFPAKVVALVLSDVLGDRLDVIASGPAWPDSSTSEDALKVLEKYGI--ETSE 238 (429)
T ss_dssp HHTTCCHHHHHHHHHTTBSSTTTHHHHHHTTSEEEEEEECCSTTCCTTTGGGCTTSCCCCCHHHHHHHHHHTTC--CCCH
T ss_pred HHcCCCHHHHHHHHHHHhhcccHHHHHhcCCCeEEEEEEecCCCCChhheecCCcCCCCCCHHHHHHHHHHhCC--CCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 4999
Q ss_pred HHHHHHccCCCCCCCCCCCCeeEEEEechHHHHHHHHHHHHHCCCcEEEcCCCccchHHHHHHHhhc
Q psy9348 241 SVMTILSHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDICRGYVD 307 (308)
Q Consensus 241 ~v~~~L~~~~~~~~~~~~~~~~~~iig~n~~al~aA~~~A~~~G~~~~il~~~l~Gea~~va~~~a~ 307 (308)
+|+++|+..+| +.|.+++|+|||||..++++|+++|+++||++++++++++|||||+|++|+.
T Consensus 239 ~v~~~L~~etp----k~~~~~~~~iIasn~~al~AAa~~A~~~G~~~~il~~~l~Gearevg~~~a~ 301 (429)
T 2b8n_A 239 SVKRAILQETP----KHLSNVEIHLIGNVQKVCDEAKSLAKEKGFNAEIITTSLDCEAREAGRFIAS 301 (429)
T ss_dssp HHHHHHTSCCC----SCCSSEEEEEEECHHHHHHHHHHHHHHTTCEEEEEEEEECSBHHHHHHHHHH
T ss_pred HHHHHHhhhhh----hccccceEEEECCHHHHHHHHHHHHHHcCCeEEEecCCCceeHHHHHHHHHH
Confidence 99999984322 3799999999999999999999999999999999999999999999999985
No 3
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=76.58 E-value=9.4 Score=31.34 Aligned_cols=98 Identities=12% Similarity=0.190 Sum_probs=61.2
Q ss_pred cEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhcC
Q psy9348 44 NVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHC 123 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~ 123 (308)
.++|++=|+-|.+|.+.++.++|+. .++..+..- ||+.--.-.+++.+.++++
T Consensus 5 giii~sHG~~A~gl~~~~~~i~G~~-----------------------~~v~av~~~----~~~~~~~~~~~i~~~i~~~ 57 (144)
T 3lfh_A 5 FVLIITHGDFGKGLLSGAEVIIGKQ-----------------------ENVHTVGLN----LGDNIEVVRKEVEKIIKEK 57 (144)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHCCC-----------------------SSEEEEEEC----TTCCHHHHHHHHHHHHHHH
T ss_pred eEEEEeCcHHHHHHHHHHHHHcCCC-----------------------CcEEEEEcc----CCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999864 134444421 3444445667888888888
Q ss_pred -CCCCEEEEE--EeCCcc-----ccccC-C---CCCCCHHHHHHHHHHHHhCCCChHHH
Q psy9348 124 -TKDDVVLVL--ISGGGS-----ACLSS-P---KSPLSLEDKLKTIKLLVQSGANIKEL 170 (308)
Q Consensus 124 -~~~Dlvl~L--ISGGgS-----ALl~~-P---~~gitLedk~~~~~~Ll~sGA~I~Ei 170 (308)
..+|=|||| +-||.- .+..- + +.|++|.=+.++... +.+.+++|+
T Consensus 58 ~~~~~gvliLtDl~GGSp~n~a~~l~~~~~v~vItGvNLpMlle~~~~--r~~~~l~el 114 (144)
T 3lfh_A 58 LQEDKEIIIVVDLFGGSPFNIALSMMKEYDVKVITGINMPMLVELLTS--INVYDTTEL 114 (144)
T ss_dssp HTTTCEEEEEESSSSSHHHHHHHHHHHHHCCEEEESCCHHHHHHHHHS--TTTSCHHHH
T ss_pred hCCCCcEEEEEeCCCCCHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHh--ccCCCHHHH
Confidence 777877777 445542 11111 1 235666655554432 334466654
No 4
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=72.16 E-value=15 Score=29.42 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=64.8
Q ss_pred cEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhcC
Q psy9348 44 NVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHC 123 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~ 123 (308)
.++|++=|+-|-+|++.++.++|+. .++..+.. . ||+.--.-.+++.+.++++
T Consensus 3 ~iii~sHG~~A~gl~~~~~~i~G~~-----------------------~~v~ai~~--~--~~~~~~~~~~~i~~~i~~~ 55 (135)
T 1pdo_A 3 AIVIGTHGWAAEQLLKTAEMLLGEQ-----------------------ENVGWIDF--V--PGENAETLIEKYNAQLAKL 55 (135)
T ss_dssp EEEEECSBTHHHHHHHHHHHHHCCC-----------------------SSEEEECB--C--TTCCHHHHHHHHHHHHTTS
T ss_pred eEEEEeChHHHHHHHHHHHHHcCCc-----------------------CCEEEEEe--e--CCCCHHHHHHHHHHHHHhc
Confidence 5789999999999999999999853 13555542 1 3444445678899999999
Q ss_pred CCCCEEEEE--EeCCc---c--cccc-CC----CCCCCHHHHHHHHHHHHhCCCChHHH
Q psy9348 124 TKDDVVLVL--ISGGG---S--ACLS-SP----KSPLSLEDKLKTIKLLVQSGANIKEL 170 (308)
Q Consensus 124 ~~~Dlvl~L--ISGGg---S--ALl~-~P----~~gitLedk~~~~~~Ll~sGA~I~Ei 170 (308)
..+|=||+| +-||. . .++. .+ +.|++|.=+.++... ...+.+++|+
T Consensus 56 ~~~~gvliLtDl~GGSp~n~a~~~~~~~~~v~vi~GvNlpmlle~~~~-~~~~~~l~el 113 (135)
T 1pdo_A 56 DTTKGVLFLVDTWGGSPFNAASRIVVDKEHYEVIAGVNIPMLVETLMA-RDDDPSFDEL 113 (135)
T ss_dssp CCTTCEEEEESSTTSHHHHHHHHHHTTCTTEEEEESCCHHHHHHHHHH-HTTCCCHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHhccCCEEEEeCCCHHHHHHHHHh-cccCCCHHHH
Confidence 887766666 44554 1 2222 22 345688766654431 1238888886
No 5
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=69.67 E-value=20 Score=28.80 Aligned_cols=98 Identities=10% Similarity=0.072 Sum_probs=66.2
Q ss_pred cEEEEEech-hHHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhc
Q psy9348 44 NVYLIGFGK-AVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKH 122 (308)
Q Consensus 44 ~i~vvg~GK-Aa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~ 122 (308)
.++|++=|+ -|-+|++.++.++|+.. ++.+.-. ||+..-+--+++.+.+++
T Consensus 6 giiivsHG~~~A~~l~~~a~~i~G~~~------------------------~~aid~~----~~~~~~~~~~~i~~~i~~ 57 (130)
T 3gx1_A 6 EVIVMMHGRSTATSMVETVQELLSIES------------------------GIALDMP----LTVEVKAMYEKLKQTVVK 57 (130)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHTCCC------------------------CEEEEEC----TTSCHHHHHHHHHHHHHT
T ss_pred EEEEEcCCHHHHHHHHHHHHHHcCccC------------------------EEEEEec----CCCCHHHHHHHHHHHHHh
Confidence 689999999 99999999999998631 2233221 344455677889999999
Q ss_pred CCCCCEEEEEEeCCccc-----ccc---CC---CCCCCHHHHHHHHHHHHhCCCChHHH
Q psy9348 123 CTKDDVVLVLISGGGSA-----CLS---SP---KSPLSLEDKLKTIKLLVQSGANIKEL 170 (308)
Q Consensus 123 ~~~~Dlvl~LISGGgSA-----Ll~---~P---~~gitLedk~~~~~~Ll~sGA~I~Ei 170 (308)
+..+|=||+|.==|.-. +.. .+ +.|++|.=..++.+...... +++|+
T Consensus 58 ~d~~~GVLiL~DmGSp~n~a~~l~~~~~~~v~vI~gvnlpmllea~~~~~~~~-~l~el 115 (130)
T 3gx1_A 58 LNPVKGVLILSDMGSLTSFGNILTEELGIRTKTVTMVSTPVVLEAMRKASLGR-GLEDI 115 (130)
T ss_dssp SCCTTCEEEEECSGGGGTHHHHHHHHHCCCEEEECSCCHHHHHHHHHHHHTTC-CHHHH
T ss_pred hCCCCCEEEEEeCCCHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHhhcCC-CHHHH
Confidence 98888777776553321 111 12 25788887777765444444 88876
No 6
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=67.00 E-value=50 Score=26.85 Aligned_cols=94 Identities=15% Similarity=0.154 Sum_probs=58.8
Q ss_pred cCcEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHh
Q psy9348 42 KNNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVK 121 (308)
Q Consensus 42 ~~~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~ 121 (308)
.++||++|.|. +..+|..+...+.. + | .++.++.. |.. .....+.
T Consensus 39 a~~I~i~G~G~-S~~~a~~~~~~l~~-~---------g------------~~~~~~~~------~~~------~~~~~~~ 83 (187)
T 3sho_A 39 ADHVIVVGMGF-SAAVAVFLGHGLNS-L---------G------------IRTTVLTE------GGS------TLTITLA 83 (187)
T ss_dssp CSEEEEECCGG-GHHHHHHHHHHHHH-T---------T------------CCEEEECC------CTH------HHHHHHH
T ss_pred CCEEEEEecCc-hHHHHHHHHHHHHh-c---------C------------CCEEEecC------Cch------hHHHHHh
Confidence 35999999997 56678877776631 1 1 12333331 111 1234456
Q ss_pred cCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhcccccchHhhhh
Q psy9348 122 HCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLAEIV 189 (308)
Q Consensus 122 ~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~vKGG~La~~~ 189 (308)
.++++|++|+ ||-.|.. .+..+..+...+.|++|- -+..-+++.|++.+
T Consensus 84 ~~~~~d~~i~-iS~sG~t-----------~~~~~~~~~ak~~g~~vi-------~IT~~~~s~l~~~a 132 (187)
T 3sho_A 84 NLRPTDLMIG-VSVWRYL-----------RDTVAALAGAAERGVPTM-------ALTDSSVSPPARIA 132 (187)
T ss_dssp TCCTTEEEEE-ECCSSCC-----------HHHHHHHHHHHHTTCCEE-------EEESCTTSHHHHHC
T ss_pred cCCCCCEEEE-EeCCCCC-----------HHHHHHHHHHHHCCCCEE-------EEeCCCCCcchhhC
Confidence 7888886655 6766543 467788888888888763 34555677787765
No 7
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis} SCOP: c.54.1.0
Probab=66.66 E-value=20 Score=29.37 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=65.0
Q ss_pred cEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhcC
Q psy9348 44 NVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHC 123 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~ 123 (308)
.++|++=|+-|.+|.+.++.++|+. .++..+.. . ||+.--.-.+++.+.++++
T Consensus 3 giii~sHg~~A~gl~~~~~~i~G~~-----------------------~~i~av~~--~--~~~~~~~~~~~i~~~i~~~ 55 (150)
T 3ipr_A 3 GIVIATHGALSDGAKDAATVIMGAT-----------------------ENIETVNL--N--SGDDVQALGGQIKTAIENV 55 (150)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHSCC-----------------------CSEEEEEE--C--TTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEECcHHHHHHHHHHHHHcCCC-----------------------CCEEEEEe--c--CCCCHHHHHHHHHHHHHhc
Confidence 5789999999999999999999864 13444543 1 4444445667888888888
Q ss_pred CCCCEEEEE--EeCCccc-----cccC------C----CCCCCHHHHHHHHHHHHhCCCChHHH
Q psy9348 124 TKDDVVLVL--ISGGGSA-----CLSS------P----KSPLSLEDKLKTIKLLVQSGANIKEL 170 (308)
Q Consensus 124 ~~~Dlvl~L--ISGGgSA-----Ll~~------P----~~gitLedk~~~~~~Ll~sGA~I~Ei 170 (308)
..+|=|||| +-||.-. ++.- + +.|++|.=+.++...- ..+.+++|+
T Consensus 56 ~~~~gvlvLtDl~GGSp~n~a~~~~~~~~~~~~~~v~vI~GvNLpmlle~~~~r-~~~~~l~el 118 (150)
T 3ipr_A 56 QQGDGVLVMVDLLSASPYNQAVLVINELEPALQKKIFVVSGTNLPMVLEAINHQ-LLGTPIAEA 118 (150)
T ss_dssp CSSSCEEEEESSTTSHHHHHHHHHHTTSCHHHHTTEEEEESCCHHHHHHHHHHH-HHTCCHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHhhhhccCCCEEEEeCCCHHHHHHHHHhh-hcCCCHHHH
Confidence 877767776 5677622 2211 1 2468887777665322 235677774
No 8
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=61.69 E-value=30 Score=27.84 Aligned_cols=96 Identities=17% Similarity=0.264 Sum_probs=63.2
Q ss_pred cEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhcC
Q psy9348 44 NVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHC 123 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~ 123 (308)
.++|++=|+-|-+|+..++.++|+. .++..+.. . ||+.--.-.+++.++++++
T Consensus 7 ~iiivsHG~~A~gl~~~~~~i~G~~-----------------------~~i~ai~~--~--~~~~~~~~~~~i~~~i~~~ 59 (142)
T 3bed_A 7 KLILMSHGRMAEETLASTQMIVGEL-----------------------ADAAIVSM--T--AEDGLSGTQAKLAAILKEA 59 (142)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHCTT-----------------------CCCEEEEE--C--TTTHHHHHHHHHHHHHHHH
T ss_pred cEEEEcChHHHHHHHHHHHHHcCCC-----------------------CCEEEEEe--c--CCCCHHHHHHHHHHHHHhc
Confidence 6889999999999999999999853 13455543 1 3444445678888889888
Q ss_pred CCCCEEEEE--EeCCc---cc--ccc-CC----CCCCCHHHHHHHHHHHHhCCCChHHH
Q psy9348 124 TKDDVVLVL--ISGGG---SA--CLS-SP----KSPLSLEDKLKTIKLLVQSGANIKEL 170 (308)
Q Consensus 124 ~~~Dlvl~L--ISGGg---SA--Ll~-~P----~~gitLedk~~~~~~Ll~sGA~I~Ei 170 (308)
.. |=||+| +-||. .| ++. -+ +.|++|.=..++... .+.+++|+
T Consensus 60 ~~-~gvliLtDl~GGSp~n~a~~~~~~~~~v~vi~GvNlpmlle~~~~---~~~~l~el 114 (142)
T 3bed_A 60 GN-VPTLVLADLXGGTPCNVAMMAMGTYPQLRVVAGLNLAMAIEAAVS---PVENVDEL 114 (142)
T ss_dssp CS-CCEEEEESSTTSHHHHHHHHHTTTCTTEEEEESCCHHHHHHHHHC---CCCCHHHH
T ss_pred CC-CCEEEEEECCCCHHHHHHHHHhccCCCEEEEeCCCHHHHHHHHHc---cCCCHHHH
Confidence 77 555555 44554 12 221 12 235677766665543 68888876
No 9
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=59.59 E-value=4.5 Score=28.77 Aligned_cols=34 Identities=35% Similarity=0.480 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhcc
Q psy9348 146 SPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSD 179 (308)
Q Consensus 146 ~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~ 179 (308)
.+||+++..++-++|..|-|.|+++=.|-.+||.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~ 41 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSD 41 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhH
Confidence 3599999999999999999999999999999985
No 10
>3mtq_A Putative phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) permease...; PTS system fructose IIA component; 1.70A {Klebsiella pneumoniae subsp}
Probab=58.56 E-value=24 Score=29.49 Aligned_cols=97 Identities=21% Similarity=0.258 Sum_probs=64.4
Q ss_pred cEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhcC
Q psy9348 44 NVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHC 123 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~ 123 (308)
.++|++=|+-|.+|..+++.++|+. +++..+.- .|-++ -.-.+++.++++++
T Consensus 23 ~iII~sHG~~A~gl~~s~~~i~G~~-----------------------~~v~av~~--~~~~~---~~~~~~~~~~i~~~ 74 (159)
T 3mtq_A 23 HYIFASHGSFANGLLNSVELILGKQ-----------------------PDIHTLCA--YVEEE---VDLTQQVEALVARF 74 (159)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHCCC-----------------------TTEEEEEE--TSCSS---SCHHHHHHHHHHTS
T ss_pred eEEEEeCcHHHHHHHHHHHHHcCCC-----------------------CCeEEEEC--CCCCH---HHHHHHHHHHHHhc
Confidence 7999999999999999999999874 12333321 11111 13467888999999
Q ss_pred CCCCEEEEE--EeCCcc-----ccccCC----CCCCCHHHHHHHHHHHHhCCCChHHH
Q psy9348 124 TKDDVVLVL--ISGGGS-----ACLSSP----KSPLSLEDKLKTIKLLVQSGANIKEL 170 (308)
Q Consensus 124 ~~~Dlvl~L--ISGGgS-----ALl~~P----~~gitLedk~~~~~~Ll~sGA~I~Ei 170 (308)
.++|=|||| +-||.- .++.-| +.|++|.=+.++.. .+.+.+++|+
T Consensus 75 ~~~~gVLiLtDl~GGSP~n~a~~~~~~~~v~vItGvNLpMlle~~~--~~~~~~l~el 130 (159)
T 3mtq_A 75 PAQDELIVITDIFAGSVNNEFVRFLSRPHFHLLSGLNLPLIIDLLI--SAAEDNTEKL 130 (159)
T ss_dssp CTTSEEEEEESCTTSHHHHHHHGGGGSTTEEEEECCCHHHHHHHHH--TTTCCCHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHhcCCCeEEEeCCCHHHHHHHHH--hhcCCCHHHH
Confidence 888888888 556641 233222 24688877776654 4566777764
No 11
>2kui_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=56.17 E-value=7.9 Score=34.88 Aligned_cols=94 Identities=19% Similarity=0.274 Sum_probs=64.6
Q ss_pred CCCCCEEEEEEeCCccccccCC-CCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhccccc--chHhhhh-------cCC
Q psy9348 123 CTKDDVVLVLISGGGSACLSSP-KSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKG--GQLAEIV-------YPA 192 (308)
Q Consensus 123 ~~~~Dlvl~LISGGgSALl~~P-~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~vKG--G~La~~~-------~pa 192 (308)
+.+++.|.+.+|-| .....+| .-|.|+++ ..+.|-+.|..+.. +..-+.+.. |.....- .+.
T Consensus 59 v~~g~~V~l~vs~G-~~~v~vPdv~G~s~~~---A~~~L~~~Gl~~~~----~~~s~~~~~~~G~Vi~q~P~~G~~v~~g 130 (275)
T 2kui_A 59 VSAGDEITVNVSTG-PEQREIPDVSTLTYAE---AVKKLTAAGFGRFK----QANSPSTPELVGKVIGTNPPANQTSAIT 130 (275)
T ss_dssp ECSSCEEEEEEEES-CCEEECCCCCTTCHHH---HHHHHHHTSCCCEE----EEEECCCTTTBTSEEEESSCSSSEEETT
T ss_pred cCCCCEEEEEEecC-CcccccCccCCCCHHH---HHHHHHHCCCeecc----eEeCCCCCCcCCEEEEEcCCCCCCCCCC
Confidence 46788999999966 4466777 45677665 55667788987653 333344555 6655432 234
Q ss_pred eEEEEEEecCCCCCCCccccCc---ccCCCC--CHHHHHHHHHHhCCC
Q psy9348 193 TLVSLIISDIVGDPLQDIASGP---TVLNED--LWSDARDIVIKYGLQ 235 (308)
Q Consensus 193 ~v~sLilSDV~Gd~l~~IaSGP---t~pd~~--t~~da~~il~~y~l~ 235 (308)
..++|.+|. || ++||-. ++++|...|+..||.
T Consensus 131 ~~V~l~vS~-----------G~~~v~vPdv~G~~~~~A~~~L~~~Gl~ 167 (275)
T 2kui_A 131 NVVIIIVGS-----------GPATKDIPDVAGQTVDVAQKNLNVYGFT 167 (275)
T ss_dssp CCEEEEEEC-----------CCCEEECCCCCSSBHHHHHHHHHHTTCC
T ss_pred CEEEEEEeC-----------CCccccCCccCCCcHHHHHHHHHHCCCe
Confidence 567888884 43 577765 799999999999984
No 12
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=56.09 E-value=34 Score=27.79 Aligned_cols=98 Identities=12% Similarity=0.130 Sum_probs=64.0
Q ss_pred cEEEEEech-hHHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhc
Q psy9348 44 NVYLIGFGK-AVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKH 122 (308)
Q Consensus 44 ~i~vvg~GK-Aa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~ 122 (308)
.++|++=|+ -|-+|++.++.++|+.. +..+.-. |++..-+--+++.+.+++
T Consensus 6 giiIvtHG~s~A~~l~~~a~~i~G~~~------------------------~~aid~~----~~~~~~~~~~~i~~~i~~ 57 (139)
T 3gdw_A 6 GVFVLMHGDSTASSMLKTAQELLGTSI------------------------GTAMNMP----LTMEVQTMYEQLRNQVIT 57 (139)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHTCCC------------------------CEEEEEC----TTSCHHHHHHHHHHHHHT
T ss_pred eEEEEcCCHHHHHHHHHHHHHHcCccc------------------------EEEEEcc----CCCCHHHHHHHHHHHHHh
Confidence 689999999 99999999999998632 2222211 444445667888888888
Q ss_pred --CCCCCEEEEEEeCCccccc-----c---CC---CCCCCHHHHHHHHHHHHhCCCChHHH
Q psy9348 123 --CTKDDVVLVLISGGGSACL-----S---SP---KSPLSLEDKLKTIKLLVQSGANIKEL 170 (308)
Q Consensus 123 --~~~~Dlvl~LISGGgSALl-----~---~P---~~gitLedk~~~~~~Ll~sGA~I~Ei 170 (308)
+..+|=||+|.==|.-.-+ . .+ +.|++|.=..++.... ..+.+++|+
T Consensus 58 ~~~d~g~GVLiL~DmGSp~n~a~~l~~~~~~~v~vI~gvnlpmllea~~~~-~~~~~L~el 117 (139)
T 3gdw_A 58 QKESLNNGILLLTDMGSLNSFGNMLFEETGIRTKAITMTSTMIVLEAIRMA-SVGRSLEDI 117 (139)
T ss_dssp STGGGTTCEEEEECSGGGGGHHHHHHHHHCCCEEEECSCCHHHHHHHHHHH-HTTCCHHHH
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHhhCCCEEEEeCCCHHHHHHHHHHh-hcCCCHHHH
Confidence 5466666666544332211 1 12 2568887777766543 357788876
No 13
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=51.71 E-value=21 Score=26.20 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=30.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhcc
Q psy9348 143 SPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSD 179 (308)
Q Consensus 143 ~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~ 179 (308)
.|+..||.+|+++..+.|.+.|.+-..+|.++..|+.
T Consensus 48 ~~l~~It~~~i~~~~~~l~~~~~s~~t~~~~~~~l~~ 84 (117)
T 2kkp_A 48 IPLKKLQPADIQRLYASKLESGLSPTRVRYIHVVLHE 84 (117)
T ss_dssp SCTTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred eEHHHCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6889999999999999999888877777766666664
No 14
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=50.45 E-value=11 Score=27.88 Aligned_cols=37 Identities=8% Similarity=0.177 Sum_probs=29.8
Q ss_pred cCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhccc
Q psy9348 142 SSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDV 180 (308)
Q Consensus 142 ~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~v 180 (308)
..|+..||-.|.+++.+.|.+.|. ..+|.++..|+++
T Consensus 41 ~~~l~~It~~~i~~~~~~l~~~~~--~t~~~~~~~l~~i 77 (106)
T 2khv_A 41 PLSVQDVDTKLIMKVLDPIWEQKP--ETASRLRGRIESV 77 (106)
T ss_dssp TSBSSSCCHHHHHHHHHHHHHHCH--HHHHHHHHHHHHH
T ss_pred CccHHHcCHHHHHHHHHHHHHhCh--HHHHHHHHHHHHH
Confidence 578999999999999999987774 6677777766654
No 15
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=46.14 E-value=1.3e+02 Score=25.17 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=35.4
Q ss_pred cCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhcccccchHhhhhcCCeE
Q psy9348 122 HCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLAEIVYPATL 194 (308)
Q Consensus 122 ~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~vKGG~La~~~~pa~v 194 (308)
.++++|+||+ ||..|.. .+..+..+...+.|+++- -++.-+++.|++.+.+..+
T Consensus 111 ~~~~~Dvvi~-iS~SG~t-----------~~~~~~~~~ak~~g~~vi-------~iT~~~~s~la~~a~~~d~ 164 (201)
T 3trj_A 111 LGNEDDILLV-ITTSGDS-----------ENILSAVEEAHDLEMKVI-------ALTGGSGGALQNMYNTDDI 164 (201)
T ss_dssp HCCTTCEEEE-ECSSSCC-----------HHHHHHHHHHHHTTCEEE-------EEEETTCCGGGGTCCTTCE
T ss_pred hCCCCCEEEE-EeCCCCC-----------HHHHHHHHHHHHCCCcEE-------EEECCCCCHHHHhhccCCE
Confidence 3688997765 5655543 567777777777777653 3455677777777654444
No 16
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=45.28 E-value=19 Score=30.30 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=37.6
Q ss_pred ceEEEecCCCCCCCHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCC
Q psy9348 93 EIEIRECARNNLPDEASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSP 144 (308)
Q Consensus 93 ~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P 144 (308)
.|-|+= ++++-+|+...++|+++-+.+.+.+ +.++||||.-++.+-
T Consensus 3 ~V~V~g-s~~~~~~~~~~~~A~~lg~~La~~g-----~~lV~Ggg~GiM~aa 48 (171)
T 1weh_A 3 LLAVFV-SSRLSPEDPLYARWVRYGEVLAEEG-----FGLACGGYQGGMEAL 48 (171)
T ss_dssp EEEEEC-CSSCCTTSHHHHHHHHHHHHHHHTT-----EEEEECCSSTHHHHH
T ss_pred EEEEEe-CCCCCCCcHHHHHHHHHHHHHHHCC-----CEEEeCChhhHHHHH
Confidence 366664 4688899999999999999998865 899999998777655
No 17
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=41.16 E-value=98 Score=25.05 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcChhhHHHhhcccccceeeeecceecccCcEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCcccc
Q psy9348 5 KLIYEAAVSAVNGQNLIQANVRLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGIL 84 (308)
Q Consensus 5 ~~i~~aav~av~P~~~v~~~l~~~~~~L~v~~~~~~l~~~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~ 84 (308)
.+-++...+..++.. +.+.+..- .-.++||++|.|.. ..+|..+...+. ++ |.
T Consensus 12 ~~~l~~t~~~l~~~~-i~~~~~~i-----------~~a~~I~i~G~G~S-~~~A~~~~~~l~-~~--g~----------- 64 (186)
T 1m3s_A 12 LNELHNSAAYISNEE-ADQLADHI-----------LSSHQIFTAGAGRS-GLMAKSFAMRLM-HM--GF----------- 64 (186)
T ss_dssp HHHHHHHHTTCCHHH-HHHHHHHH-----------HHCSCEEEECSHHH-HHHHHHHHHHHH-HT--TC-----------
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHH-----------HcCCeEEEEecCHH-HHHHHHHHHHHH-hc--CC-----------
Confidence 344555666666543 33433321 11359999999965 667777776663 11 10
Q ss_pred CCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCC
Q psy9348 85 KPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSG 164 (308)
Q Consensus 85 ~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sG 164 (308)
++.++. ..| ...++++|+| +.||..|. | .+..+..+.+.+.|
T Consensus 65 --------~~~~~~-~~~-----------------~~~~~~~d~v-I~iS~sG~----------t-~~~~~~~~~ak~~g 106 (186)
T 1m3s_A 65 --------NAHIVG-EIL-----------------TPPLAEGDLV-IIGSGSGE----------T-KSLIHTAAKAKSLH 106 (186)
T ss_dssp --------CEEETT-STT-----------------CCCCCTTCEE-EEECSSSC----------C-HHHHHHHHHHHHTT
T ss_pred --------eEEEeC-ccc-----------------ccCCCCCCEE-EEEcCCCC----------c-HHHHHHHHHHHHCC
Confidence 122221 111 2456788854 55665554 2 56777888888889
Q ss_pred CChHHHHHHHHhhcccccchHhhhh
Q psy9348 165 ANIKELNKVRKKLSDVKGGQLAEIV 189 (308)
Q Consensus 165 A~I~EiN~VRkhLS~vKGG~La~~~ 189 (308)
+++- -+..-++..|++.+
T Consensus 107 ~~vi-------~IT~~~~s~l~~~a 124 (186)
T 1m3s_A 107 GIVA-------ALTINPESSIGKQA 124 (186)
T ss_dssp CEEE-------EEESCTTSHHHHHC
T ss_pred CEEE-------EEECCCCCchHHhC
Confidence 8762 34555667787765
No 18
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=37.93 E-value=15 Score=22.02 Aligned_cols=13 Identities=69% Similarity=0.813 Sum_probs=9.4
Q ss_pred hHHH-HHHHHhhcc
Q psy9348 167 IKEL-NKVRKKLSD 179 (308)
Q Consensus 167 I~Ei-N~VRkhLS~ 179 (308)
|.|+ |.+||.||-
T Consensus 15 ikelennirkalsf 28 (31)
T 2wh0_Q 15 IKELENNIRKALSF 28 (31)
T ss_pred HHHHHHHHHHHhcc
Confidence 4444 889999883
No 19
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=37.86 E-value=95 Score=29.23 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=29.4
Q ss_pred CCCCHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCcccc
Q psy9348 103 NLPDEASCQNTQLIQNFVKHCTKDDVVLVLISGGGSAC 140 (308)
Q Consensus 103 P~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSAL 140 (308)
..|+...+..+ +-++++.++++|.++|..||=|.-.
T Consensus 107 ~~pTr~nI~~a--L~~L~~~a~pgD~llfYFSGHG~q~ 142 (350)
T 4f6o_A 107 RVPTRANMIRA--MQWLVKDAQPNDSLFLHYSGHGGQT 142 (350)
T ss_dssp GSCCHHHHHHH--HHHHHTTCCTTCEEEEEEESCEEEC
T ss_pred cCCCHHHHHHH--HHHHHHhCCCCCEEEEEEcCCceec
Confidence 45888877654 5688899999999999999988754
No 20
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=36.40 E-value=25 Score=25.97 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=30.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhcc
Q psy9348 143 SPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSD 179 (308)
Q Consensus 143 ~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~ 179 (308)
.|+..||..|+++..+.|.+.|.+-..+|.++..|+.
T Consensus 46 ~~l~~it~~~i~~~~~~l~~~g~s~~t~~~~~~~l~~ 82 (118)
T 2kd1_A 46 IKLAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKVIRN 82 (118)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5788999999999999999888777666666666654
No 21
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=35.04 E-value=42 Score=24.94 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=25.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhc
Q psy9348 143 SPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLS 178 (308)
Q Consensus 143 ~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS 178 (308)
.|+..||-.|++++.+.|.+.| .-..+|.++..|+
T Consensus 45 ~~l~~It~~~i~~~~~~l~~~~-s~~t~~~~~~~l~ 79 (118)
T 2kj8_A 45 LEIQDIEPMQLLEVIRRFEDRG-AMERANKARRRCG 79 (118)
T ss_dssp SBTTSCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHH
T ss_pred CcHHHCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 5889999999999999999888 3344444444444
No 22
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Probab=34.81 E-value=84 Score=27.18 Aligned_cols=40 Identities=23% Similarity=0.430 Sum_probs=29.4
Q ss_pred cccchHhhhhcCCeEEEEEEecCCCCCCCccccCcccCCCCCHHHHHHHHHHhCC
Q psy9348 180 VKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGL 234 (308)
Q Consensus 180 vKGG~La~~~~pa~v~sLilSDV~Gd~l~~IaSGPt~pd~~t~~da~~il~~y~l 234 (308)
+..|.+.+...+.+.+.|-.=| ||. .....++.+|++|++
T Consensus 20 ~~~~~i~~~~~~~k~VaLTFDD-----------Gp~----~~~~~il~iL~~~~v 59 (230)
T 2y8u_A 20 VPTGQVITQCTTPNTIALTFDD-----------GPS----EYTPQLLDLLSRYSA 59 (230)
T ss_dssp CCSSSEECSCCSTTEEEEEEES-----------CCC----TTHHHHHHHHHHTTC
T ss_pred CCCCceeecCCCCCEEEEEecC-----------Cch----hhHHHHHHHHHHcCC
Confidence 5667776666667777777755 554 346789999999997
No 23
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=33.83 E-value=33 Score=29.30 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=35.3
Q ss_pred ceEEEecCCCCCCCHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCcc-ccccC
Q psy9348 93 EIEIRECARNNLPDEASCQNTQLIQNFVKHCTKDDVVLVLISGGGS-ACLSS 143 (308)
Q Consensus 93 ~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgS-ALl~~ 143 (308)
.|-|+= ++++-+|+...++|+++=+.+.+.+ +.+|||||. -++++
T Consensus 3 ~V~V~g-ss~~~~~~~~~~~A~~lg~~La~~g-----~~lV~GGg~~GiM~a 48 (191)
T 1t35_A 3 TICVFA-GSNPGGNEAYKRKAAELGVYMAEQG-----IGLVYGGSRVGLMGT 48 (191)
T ss_dssp EEEEEC-CSSCCSSTHHHHHHHHHHHHHHHTT-----CEEEECCCCSHHHHH
T ss_pred EEEEEE-CCCCCCChHHHHHHHHHHHHHHHCC-----CEEEECCCcccHHHH
Confidence 466775 4677799999999999999988765 678999997 55543
No 24
>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B
Probab=33.68 E-value=58 Score=29.64 Aligned_cols=44 Identities=25% Similarity=0.200 Sum_probs=35.9
Q ss_pred CCCCCC-HhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCC
Q psy9348 101 RNNLPD-EASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSP 144 (308)
Q Consensus 101 ~HP~Pd-~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P 144 (308)
.+|.|+ +...+-++.|-+++++++.+.-|+++.|||-|==+..+
T Consensus 156 ~~p~~~~~~~~~lG~aL~~~~~~~~~d~~VlIIgSG~lSH~l~~~ 200 (302)
T 1b4u_B 156 TYPPPSGKRCFALGDSIRAAVESFPEDLNVHVWGTGGMSHQLQGP 200 (302)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHTSSSCCEEEEEEECCSSCCCSST
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCccccCCCCC
Confidence 467776 56788899999999988778889999999998766544
No 25
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=33.38 E-value=43 Score=30.13 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=27.5
Q ss_pred CCHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccc
Q psy9348 105 PDEASCQNTQLIQNFVKHCTKDDVVLVLISGGGSA 139 (308)
Q Consensus 105 Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSA 139 (308)
|+...+.. ++-++++.+.++|.++|..||=|.-
T Consensus 55 ~t~~~i~~--al~~l~~~~~~~D~~~~yfSGHG~~ 87 (285)
T 3bij_A 55 ATRAKVID--AIGKAAKALGKGDIFMLSYSGHGGQ 87 (285)
T ss_dssp CCHHHHHH--HHHHHHHHCCTTCEEEEEEESCEEE
T ss_pred cCHHHHHH--HHHHHHHhCCCCCEEEEEEcCCccc
Confidence 77777774 4778889999999999999998753
No 26
>2q22_A Uncharacterized protein; YP_323524.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PG4; 2.11A {Anabaena variabilis atcc 29413} SCOP: d.365.1.1
Probab=31.72 E-value=44 Score=27.56 Aligned_cols=73 Identities=21% Similarity=0.215 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHhCCCcc---chHHHHHHHccCCCCCCCCCCCCeeEEEEe----chHHHHHHHHHHHHHCCCcEEEcCC
Q psy9348 220 DLWSDARDIVIKYGLQNK---VSKSVMTILSHETPHQDTKYFENVHNHIIG----NNRAALLGAKWKAESLGFQTVILSS 292 (308)
Q Consensus 220 ~t~~da~~il~~y~l~~~---lp~~v~~~L~~~~~~~~~~~~~~~~~~iig----~n~~al~aA~~~A~~~G~~~~il~~ 292 (308)
.+.+||+.+|+.|.-... +.++-++.|++.... ......++.|| |...|+.|-+...+++||.....-.
T Consensus 10 ~~i~~a~~~L~d~~~l~~ap~ls~~~r~~Lr~aL~~----~~~~sd~~~lGIcA~s~~~a~~ALr~~~~alg~~~~~~~~ 85 (139)
T 2q22_A 10 LTTADAKKILNKFNCLDIAPILKPSEKESVRRALIL----ITKLSDYQILGICADTADEGLLAMKTYSHALGYEVPIDLP 85 (139)
T ss_dssp CCHHHHHHHHHTTTTCSBCCCCCHHHHHHHHHHHHH----HHHTSSEEEEEEEESSHHHHHHHHHHHHHHTTCCCC-CCC
T ss_pred ccHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHH----HHhhCCcEEEEeecCCHHHHHHHHHHHHHHhCCCccccCC
Confidence 478999999999975432 335556666542100 11223455554 6889999999999999998654434
Q ss_pred Cccc
Q psy9348 293 DIEG 296 (308)
Q Consensus 293 ~l~G 296 (308)
..+|
T Consensus 86 ~~~G 89 (139)
T 2q22_A 86 VVEG 89 (139)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 4444
No 27
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=31.67 E-value=44 Score=28.94 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=36.6
Q ss_pred CceEEEecCCCCCCCHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCcc-ccccCC
Q psy9348 92 SEIEIRECARNNLPDEASCQNTQLIQNFVKHCTKDDVVLVLISGGGS-ACLSSP 144 (308)
Q Consensus 92 ~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgS-ALl~~P 144 (308)
+.|.|+=|+ . -+|+...++|+++=+.+.+.+ +.+|+|||. -+|++-
T Consensus 23 ~~v~Vfggs-~-~~~~~~~~~A~~lg~~La~~g-----~~lV~GGG~~GlM~a~ 69 (199)
T 3qua_A 23 WAVCVYCAS-G-PTHPELLELAAEVGSSIAARG-----WTLVSGGGNVSAMGAV 69 (199)
T ss_dssp CEEEEECCS-S-CCCHHHHHHHHHHHHHHHHTT-----CEEEECCBCSHHHHHH
T ss_pred CEEEEEECC-C-CCCHHHHHHHHHHHHHHHHCC-----CEEEECCCccCHHHHH
Confidence 468888664 5 889999999999998887765 568999997 776654
No 28
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=30.87 E-value=46 Score=24.32 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=26.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhcc
Q psy9348 143 SPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSD 179 (308)
Q Consensus 143 ~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~ 179 (308)
.|+..||..|.+++.+.|...| +-..+|.++..|++
T Consensus 46 ~~l~~it~~~i~~~~~~l~~~~-s~~t~~~~~~~l~~ 81 (116)
T 2kj5_A 46 LKVEDVKPRHIDDVLKAVMKRG-APSIANDTLRWLKR 81 (116)
T ss_dssp SBSSSCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred CcHhhCCHHHHHHHHHHHHHcc-ChHHHHHHHHHHHH
Confidence 6888999999999999998877 44455555555443
No 29
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=30.58 E-value=44 Score=23.21 Aligned_cols=35 Identities=9% Similarity=0.179 Sum_probs=26.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhcccc
Q psy9348 143 SPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVK 181 (308)
Q Consensus 143 ~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~vK 181 (308)
.|+..||.+|.++..+.|...| . -++++++++.+|
T Consensus 41 ~~l~~it~~~i~~~~~~l~~~~-~---~~t~~~~~~~l~ 75 (103)
T 2oxo_A 41 APLEDITTKEIAAMLNGYIDEG-K---AASAKLIRSTLS 75 (103)
T ss_dssp CBGGGCCHHHHHHHHHHHHHTT-C---HHHHHHHHHHHH
T ss_pred CchhhCCHHHHHHHHHHHHHCC-C---HHHHHHHHHHHH
Confidence 5788999999999999998887 3 455555555554
No 30
>3py9_A Protein kinase; pasta, muropeptide binding, phosphorylation, membran transferase; 2.20A {Staphylococcus aureus subsp} PDB: 3m9g_A
Probab=30.28 E-value=31 Score=31.40 Aligned_cols=95 Identities=22% Similarity=0.247 Sum_probs=62.1
Q ss_pred CCCCCEEEEEEeCCccccccCC-CCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhc-ccccchHhhhh--------cCC
Q psy9348 123 CTKDDVVLVLISGGGSACLSSP-KSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLS-DVKGGQLAEIV--------YPA 192 (308)
Q Consensus 123 ~~~~Dlvl~LISGGgSALl~~P-~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS-~vKGG~La~~~--------~pa 192 (308)
+.+++.|-+.+|-| ...+.+| .-|.|+++ ..+.|-+.|....++ ...-| .+.-|...... .+.
T Consensus 58 v~~g~~V~l~vS~G-~~~v~VPdv~G~s~~e---A~~~L~~~Gl~v~~~---~~~~s~~~~~G~Vi~Q~P~~G~~v~~~g 130 (294)
T 3py9_A 58 VERGDSVDVVISKG-PEKVKMPNVIGLPKEE---ALQKLKSLGLKDVTI---EKVYNNQAPKGYIANQSVTANTEIAIHD 130 (294)
T ss_dssp CCTTCEEEEEEECC-SCEEECCCCTTSBHHH---HHHHHHTTTCCCEEE---EEECCSSSCTTBEEEESSCC-CEEESSS
T ss_pred eCCCCEEEEEEcCC-CceeECCCCCCCCHHH---HHHHHHHCCCeEEEE---EEEECCCCCCCEEEEEcCCCCCEEecCC
Confidence 57889999999986 4567777 45666655 456788889875322 12223 35556655432 123
Q ss_pred eEEEEEEecCCCCCCCccccCc---ccCCCC--CHHHHHHHHHHhCCC
Q psy9348 193 TLVSLIISDIVGDPLQDIASGP---TVLNED--LWSDARDIVIKYGLQ 235 (308)
Q Consensus 193 ~v~sLilSDV~Gd~l~~IaSGP---t~pd~~--t~~da~~il~~y~l~ 235 (308)
..++|.+| +|| ++||-. +.++|.+.|+..||.
T Consensus 131 s~V~l~VS-----------~G~~~v~vPdv~G~s~~~A~~~L~~~Gl~ 167 (294)
T 3py9_A 131 SNIKLYES-----------LGIKQVYVEDFEHKSFSKAKKALEEKGFK 167 (294)
T ss_dssp CCEEEEEE-----------CCSCEEEECCCTTSBHHHHHHHHHTTTCE
T ss_pred CEEEEEEE-----------CCcccccCCCCCCCCHHHHHHHHHHCCCe
Confidence 34566655 465 678865 789999999999984
No 31
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=29.32 E-value=95 Score=18.61 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHhCCCChHHH--------HHHHHhhccccc
Q psy9348 147 PLSLEDKLKTIKLLVQSGANIKEL--------NKVRKKLSDVKG 182 (308)
Q Consensus 147 gitLedk~~~~~~Ll~sGA~I~Ei--------N~VRkhLS~vKG 182 (308)
.+|-+++..+..+ ...|.++.|| ++|++++.+.+.
T Consensus 5 ~l~~~~~~~i~~~-~~~g~s~~~IA~~lgis~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 5 ALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKDPVS 47 (51)
T ss_dssp CCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHCSTT
T ss_pred CCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHhhHHh
Confidence 4677777777654 5789999997 588888877653
No 32
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=28.67 E-value=43 Score=25.11 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=28.1
Q ss_pred cCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhcc
Q psy9348 142 SSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSD 179 (308)
Q Consensus 142 ~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~ 179 (308)
..|+..||-.|++++.+.|.+.|+ -..+|.++..|+.
T Consensus 49 ~~~l~~It~~~i~~~l~~l~~~~~-~~t~~~~~~~L~~ 85 (118)
T 2kj9_A 49 NKDIAELDTGDLLVPIKKIEKLGY-LEIAMRVKQYATA 85 (118)
T ss_dssp GSBGGGCCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHH
T ss_pred CCCHHHCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 468889999999999999988874 4555555555554
No 33
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=28.62 E-value=38 Score=26.44 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.6
Q ss_pred ccCcEEEEEechhHHHHHHHHHH
Q psy9348 41 IKNNVYLIGFGKAVLGMAVEIEA 63 (308)
Q Consensus 41 l~~~i~vvg~GKAa~~MA~a~~~ 63 (308)
+.+++.|+|+|+-...+|+.+.+
T Consensus 6 ~~~~viIiG~G~~G~~la~~L~~ 28 (140)
T 3fwz_A 6 ICNHALLVGYGRVGSLLGEKLLA 28 (140)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHH
Confidence 45699999999999999998887
No 34
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=28.38 E-value=8.4 Score=33.73 Aligned_cols=70 Identities=20% Similarity=0.209 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHhCCCChHHHHHHHHhhcccccchHhhhhcCCeEEEEEEecCCCCCCCccccCcccCCCCCHHHHH
Q psy9348 147 PLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDAR 226 (308)
Q Consensus 147 gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~vKGG~La~~~~pa~v~sLilSDV~Gd~l~~IaSGPt~pd~~t~~da~ 226 (308)
++|.+++.++.+.+.++|++.-..|+ ..-.||-=...++ .+.+.+|+++.+|||| +-.|.+||+
T Consensus 128 ~l~~~~~~~~a~~a~eaGad~I~tst-----g~~~gga~~~~i~-------~v~~~v~~~ipVia~G----GI~t~~da~ 191 (225)
T 1mzh_A 128 YLNEEEIKKAVEICIEAGADFIKTST-----GFAPRGTTLEEVR-------LIKSSAKGRIKVKASG----GIRDLETAI 191 (225)
T ss_dssp GCCHHHHHHHHHHHHHHTCSEEECCC-----SCSSSCCCHHHHH-------HHHHHHTTSSEEEEES----SCCSHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEECC-----CCCCCCCCHHHHH-------HHHHHhCCCCcEEEEC----CCCCHHHHH
Confidence 57889999999999999999875554 1113431111111 1223457788899999 445789999
Q ss_pred HHHHHhC
Q psy9348 227 DIVIKYG 233 (308)
Q Consensus 227 ~il~~y~ 233 (308)
+.++ .|
T Consensus 192 ~~l~-aG 197 (225)
T 1mzh_A 192 SMIE-AG 197 (225)
T ss_dssp HHHH-TT
T ss_pred HHHH-hC
Confidence 9886 45
No 35
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=28.01 E-value=63 Score=30.69 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=29.2
Q ss_pred CCCCHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccc
Q psy9348 103 NLPDEASCQNTQLIQNFVKHCTKDDVVLVLISGGGSA 139 (308)
Q Consensus 103 P~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSA 139 (308)
..|+...+.. ++-++++.++++|.++|..||=|.-
T Consensus 147 ~~pTr~nI~~--aL~~L~~~a~pgD~l~fyFSGHG~q 181 (367)
T 4af8_A 147 DQPTRDNIVR--YMAWLVKDAKPGDVLFFHYSGHGTQ 181 (367)
T ss_dssp BCCCHHHHHH--HHHHHHHTCCTTCEEEEEEESCEEE
T ss_pred cCCCHHHHHH--HHHHHHHhCCCCCEEEEEEcCCcCc
Confidence 3788888874 6678889999999999999997764
No 36
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=27.64 E-value=89 Score=27.19 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=33.6
Q ss_pred CceEEEecCCCCCCCHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCcc-cccc
Q psy9348 92 SEIEIRECARNNLPDEASCQNTQLIQNFVKHCTKDDVVLVLISGGGS-ACLS 142 (308)
Q Consensus 92 ~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgS-ALl~ 142 (308)
+.|-|+=| +.+-++....++|+++-..+.+.+ +.+|||||. -++.
T Consensus 14 ~~IaV~cG-S~~~~~~~y~~~A~~lg~~LA~~G-----~~vVsGGg~~GiM~ 59 (215)
T 2a33_A 14 RRICVFCG-SSQGKKSSYQDAAVDLGNELVSRN-----IDLVYGGGSIGLMG 59 (215)
T ss_dssp SEEEEECC-SSCCSSHHHHHHHHHHHHHHHHTT-----CEEEECCCSSHHHH
T ss_pred CeEEEEEC-CCCCCchHHHHHHHHHHHHHHHCC-----CEEEECCChhhHhH
Confidence 46888866 466666667888999888887764 678999997 5553
No 37
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=27.30 E-value=1.3e+02 Score=27.86 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.5
Q ss_pred CcEEEEEechhHHHHHHHHHHH
Q psy9348 43 NNVYLIGFGKAVLGMAVEIEAM 64 (308)
Q Consensus 43 ~~i~vvg~GKAa~~MA~a~~~~ 64 (308)
+++.|||.|-.++.+|..+.+.
T Consensus 147 ~~vvVIGgG~~g~E~A~~l~~~ 168 (385)
T 3klj_A 147 GKAFIIGGGILGIELAQAIIDS 168 (385)
T ss_dssp SCEEEECCSHHHHHHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhC
Confidence 4899999999999999988763
No 38
>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken structural genomics/PR initiative, RSGI, NPPSFA; 1.95A {Thermus thermophilus}
Probab=26.37 E-value=1.6e+02 Score=28.20 Aligned_cols=119 Identities=22% Similarity=0.326 Sum_probs=66.0
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCCceEEEecCCCCCCCHhhHHHHHHHHHHHhc
Q psy9348 43 NNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKH 122 (308)
Q Consensus 43 ~~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~ 122 (308)
++|+++|+|-...++ +.+.+.|.. . . .++.++. + -|. +.+.+.++.
T Consensus 67 ~~Vv~iGIGGS~LG~-~~~~~aL~~-----------~---------~--~~~~~~~---n--~dp------~~~~~~l~~ 112 (415)
T 1zzg_A 67 EDFVLIGIGGSALGP-KALEAAFNE-----------S---------G--VRFHYLD---H--VEP------EPILRLLRT 112 (415)
T ss_dssp SEEEEECCGGGTHHH-HHHHHHHCC-----------S---------C--CEEEEEC---S--CCH------HHHHHHHHH
T ss_pred CEEEEEccCccHHHH-HHHHHHHhc-----------C---------C--CceEEec---C--CCH------HHHHHHHhh
Confidence 489999999988884 445555532 0 0 1244432 3 243 345556777
Q ss_pred CCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhC-CCChHHHHHHHHhhccc---ccchHhhhhcCCeEEEEE
Q psy9348 123 CTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQS-GANIKELNKVRKKLSDV---KGGQLAEIVYPATLVSLI 198 (308)
Q Consensus 123 ~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~s-GA~I~EiN~VRkhLS~v---KGG~La~~~~pa~v~sLi 198 (308)
+.+++.+++.+|=-|+-. + |+.-....-++|.+. | + .+++|+=.| +||.|.+.+....+-++.
T Consensus 113 l~~~~TlviviSKSGtT~-----E--T~~~~~~ar~~l~~~~G-~-----~~~~~~vavT~~~~s~L~~~a~~~Gi~~f~ 179 (415)
T 1zzg_A 113 LDPRKTLVNAVSKSGSTA-----E--TLAGLAVFLKWLKAHLG-E-----DWRRHLVVTTDPKEGPLRAFAEREGLKAFA 179 (415)
T ss_dssp SCGGGEEEEEEESSSCCH-----H--HHHHHHHHHHHHHHHHG-G-----GGGGGEEEEECSSSSHHHHHHHHHTCEEEE
T ss_pred CCCCCEEEEEEeCCCCCH-----H--HHHHHHHHHHHHHHhcC-c-----cccCeEEEEeCCCCChHHHHHHHhCCcEEE
Confidence 888999999998333211 0 122222333333322 4 1 355664433 577777776433345778
Q ss_pred EecCCCCCCC
Q psy9348 199 ISDIVGDPLQ 208 (308)
Q Consensus 199 lSDV~Gd~l~ 208 (308)
+-|-+|..-+
T Consensus 180 ~~d~VGGRyS 189 (415)
T 1zzg_A 180 IPKEVGGRFS 189 (415)
T ss_dssp CCTTCCGGGC
T ss_pred eccCCCcccH
Confidence 8777775543
No 39
>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8}
Probab=25.79 E-value=1.5e+02 Score=28.85 Aligned_cols=129 Identities=19% Similarity=0.260 Sum_probs=69.1
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcccccceEEEecCCCccccCCCCCCCC--ceEEEecCCCCCCCHhhHHHHHHHHHHH
Q psy9348 43 NNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNS--EIEIRECARNNLPDEASCQNTQLIQNFV 120 (308)
Q Consensus 43 ~~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p~g~~~~~~~~~~~~~--~i~v~ega~HP~Pd~~s~~Aa~~il~~~ 120 (308)
++|+++|+|-...++ +.+.+.|........ +. ..+ ++.++.. .+ -|. ..+.+.+
T Consensus 79 ~~Vv~IGIGGS~LG~-~~~~~aL~~~~~~~~---~~-----------~~~~~~~~v~~~-~n--vdp------~~~~~~l 134 (460)
T 2q8n_A 79 DTVVVLGIGGSGLGN-LALHYSLRPLNWNEM---TR-----------EERNGYARVFVV-DN--VDP------DLMSSVL 134 (460)
T ss_dssp SEEEEECCGGGTHHH-HHHHHHHSCTTGGGS---CT-----------TTTTTCCEEEEE-CS--CCH------HHHHHHH
T ss_pred CEEEEEecCchHHHH-HHHHHHHHhhhhccc---cc-----------ccccCCcceEEe-cC--CCH------HHHHHHH
Confidence 489999999988874 455555543211000 00 111 2344443 23 233 3456667
Q ss_pred hcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhccc---ccchHhhhhcCCeEEEE
Q psy9348 121 KHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDV---KGGQLAEIVYPATLVSL 197 (308)
Q Consensus 121 ~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~v---KGG~La~~~~pa~v~sL 197 (308)
+.++++|.+++.+|=-|+-. =|+.-....-++|.+.+-+ +++|+=.| ++|.|.+.+..--+-++
T Consensus 135 ~~L~~~~TlvIviSKSGtT~-------ET~~~~~~ar~~l~~~~G~------~~~~~VAvT~~~~s~L~~~A~~~Gi~~f 201 (460)
T 2q8n_A 135 DRIDPKTTLFNVISKSGSTA-------EVMATYSIARGILEAYGLD------PREHMLITTDPEKGFLRKLVKEEGFRSL 201 (460)
T ss_dssp TTCCGGGEEEEEECSSSCCH-------HHHHHHHHHHHHHHHTTCC------GGGTEEEEECSSSSHHHHHHHHHTCEEE
T ss_pred hcCCCCCEEEEEEcCCCCCH-------HHHHHHHHHHHHHHHhcCC------ccCeEEEEeCCCCChHHHHHHHhCCceE
Confidence 88889999999998333211 0122223334444443211 55664443 57777777543223578
Q ss_pred EEecCCCCCCC
Q psy9348 198 IISDIVGDPLQ 208 (308)
Q Consensus 198 ilSDV~Gd~l~ 208 (308)
.+.|-+|..-+
T Consensus 202 ~~~d~VGGRyS 212 (460)
T 2q8n_A 202 EVPPGVGGRFS 212 (460)
T ss_dssp ECCTTCCGGGC
T ss_pred eeccccCcchH
Confidence 88887776544
No 40
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=25.57 E-value=41 Score=29.39 Aligned_cols=46 Identities=7% Similarity=0.142 Sum_probs=36.3
Q ss_pred ceEEEecCCCCCCCHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCC
Q psy9348 93 EIEIRECARNNLPDEASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSP 144 (308)
Q Consensus 93 ~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P 144 (308)
.|-|+= ++++-+|+...++|+++-+.+.+.+ +.++||||.-++.+-
T Consensus 39 ~VaV~G-ss~~~~~~~~~~~A~~lg~~La~~g-----~~lVsGGg~GiM~aa 84 (217)
T 1wek_A 39 LVSVFG-SARFGEGHPAYEAGYRLGRALAEAG-----FGVVTGGGPGVMEAV 84 (217)
T ss_dssp EEEEEC-CSSCCTTSHHHHHHHHHHHHHHHHT-----CEEEECSCSHHHHHH
T ss_pred EEEEEe-CCCCCCCcHHHHHHHHHHHHHHHCC-----CEEEeCChhhHHHHH
Confidence 466664 4688889899999999998887755 789999997666544
No 41
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=25.07 E-value=1.1e+02 Score=28.90 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=46.8
Q ss_pred CHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCccccccCCCCC--CCHHHHHHHHHHHHhCC
Q psy9348 106 DEASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSP--LSLEDKLKTIKLLVQSG 164 (308)
Q Consensus 106 d~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~g--itLedk~~~~~~Ll~sG 164 (308)
|+.-+.+-++++..++...|+ ++++|-|.-++..-|.-. +|.++..++++.|.+.+
T Consensus 273 d~~yl~~~~~~l~~l~~f~Pd---lIvvsaG~Da~~~Dplg~l~lt~~~~~~~~~~l~~~~ 330 (362)
T 3men_A 273 EAAFFERVDDALRELRRFAPD---ALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALR 330 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHCCS---EEEEEECSTTBTTCTTCCBCBCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhcCCC---EEEEECcccCcCCCCCCCccCCHHHHHHHHHHHHhhC
Confidence 556678888888888888886 666888999999999765 89999999999988764
No 42
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=25.06 E-value=70 Score=27.93 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=36.6
Q ss_pred CceEEEecCCCCCCCHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCcc-ccccCC
Q psy9348 92 SEIEIRECARNNLPDEASCQNTQLIQNFVKHCTKDDVVLVLISGGGS-ACLSSP 144 (308)
Q Consensus 92 ~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgS-ALl~~P 144 (308)
+.|-|+=| +.+-+|+...++|+++-+.+.+.+ +.||||||. -+|++.
T Consensus 10 ~~V~V~gg-sr~~~~~~~~~~A~~lg~~LA~~g-----~~lV~GGg~~GlM~aa 57 (216)
T 1ydh_A 10 RKICVFCG-SHSGHREVFSDAAIELGNELVKRK-----IDLVYGGGSVGLMGLI 57 (216)
T ss_dssp SEEEEECC-SCCCSSHHHHHHHHHHHHHHHHTT-----CEEEECCCSSHHHHHH
T ss_pred CeEEEEeC-CCCCCCcHHHHHHHHHHHHHHHCC-----CEEEECCCcccHhHHH
Confidence 46888854 466688999999999999888765 568999997 776544
No 43
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=24.49 E-value=36 Score=29.90 Aligned_cols=21 Identities=14% Similarity=0.086 Sum_probs=18.7
Q ss_pred cEEEEEechhHHHHHHHHHHH
Q psy9348 44 NVYLIGFGKAVLGMAVEIEAM 64 (308)
Q Consensus 44 ~i~vvg~GKAa~~MA~a~~~~ 64 (308)
+|.|||.|+.+...++.+.+.
T Consensus 33 ~VLVVGgG~va~~ka~~Ll~~ 53 (223)
T 3dfz_A 33 SVLVVGGGTIATRRIKGFLQE 53 (223)
T ss_dssp CEEEECCSHHHHHHHHHHGGG
T ss_pred EEEEECCCHHHHHHHHHHHHC
Confidence 999999999999988887764
No 44
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=24.46 E-value=78 Score=26.69 Aligned_cols=45 Identities=11% Similarity=0.125 Sum_probs=34.9
Q ss_pred CceEEEecCCCCCCCHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCc-ccccc
Q psy9348 92 SEIEIRECARNNLPDEASCQNTQLIQNFVKHCTKDDVVLVLISGGG-SACLS 142 (308)
Q Consensus 92 ~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGg-SALl~ 142 (308)
+.|-|+ |++.+-+++...++|+++-+.+.+.+ +.++|||| .=++.
T Consensus 14 ~~VaV~-Gs~~~g~~~~~~~~A~~lg~~La~~g-----~~lVsGGg~~Gim~ 59 (176)
T 2iz6_A 14 PIIGVM-GPGKADTAENQLVMANELGKQIATHG-----WILLTGGRSLGVMH 59 (176)
T ss_dssp CEEEEE-CCCGGGCCHHHHHHHHHHHHHHHHTT-----CEEEEECSSSSHHH
T ss_pred CeEEEE-eCCCCCCCHHHHHHHHHHHHHHHHCC-----CEEEECCCccCHhH
Confidence 467775 54565799999999999999988765 78899999 44443
No 45
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=24.26 E-value=1.7e+02 Score=21.53 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=34.4
Q ss_pred CCCCCHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCc-------------cccccCCCCCCCHHHHHHHHHHHHhC
Q psy9348 102 NNLPDEASCQNTQLIQNFVKHCTKDDVVLVLISGGG-------------SACLSSPKSPLSLEDKLKTIKLLVQS 163 (308)
Q Consensus 102 HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGg-------------SALl~~P~~gitLedk~~~~~~Ll~s 163 (308)
..+|+.++++..+++.+...........++++|+-. ...+..| ++.+++.+..+.+++.
T Consensus 58 ~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP---~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 58 VCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKP---VSLDNIRDVLSDLLEP 129 (136)
T ss_dssp CCSSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESS---CCHHHHHHHHHHHHSC
T ss_pred CCCCCCcHHHHHHHHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECC---CCHHHHHHHHHHHhch
Confidence 567888888877777653322222344555666543 3344444 5677777777666543
No 46
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=22.78 E-value=52 Score=24.38 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=25.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhc
Q psy9348 143 SPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLS 178 (308)
Q Consensus 143 ~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS 178 (308)
.|+..||-.|++++.+.|.+.| .-..+|.++..|+
T Consensus 46 ~~l~~It~~~i~~~~~~l~~~~-s~~t~~~~~~~l~ 80 (121)
T 2kkv_A 46 SDIRQLKTSHLLAPIKEVDTSG-KHDVAQRLQQRVT 80 (121)
T ss_dssp SCTTCCCSGGGHHHHHHHHHTT-THHHHHHHHHHHH
T ss_pred CCHHHcCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 5888999999999999998877 3344444444444
No 47
>2kuf_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=22.58 E-value=1.1e+02 Score=23.95 Aligned_cols=82 Identities=17% Similarity=0.107 Sum_probs=51.3
Q ss_pred ccccCC-CCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhcccccchHhhh-------hcCCeEEEEEEecCCCCCCCcc
Q psy9348 139 ACLSSP-KSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLAEI-------VYPATLVSLIISDIVGDPLQDI 210 (308)
Q Consensus 139 ALl~~P-~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~vKGG~La~~-------~~pa~v~sLilSDV~Gd~l~~I 210 (308)
....+| ..|.+.++ ..+.|-+.|..+. + ...+-+.+..|..... ..+...++|.+|.=+.
T Consensus 6 ~~v~vPdv~G~~~~~---A~~~L~~~gl~~~-~--~~~~~~~~~~g~Vi~q~P~~G~~v~~g~~V~l~vs~g~~------ 73 (139)
T 2kuf_A 6 ATKDIPDVAGQTVDV---AQKNLNVYGFTKF-S--QASVDSPRPAGEVTGTNPPAGTTVPVDSVIELQVSKGNQ------ 73 (139)
T ss_dssp SEEEECCCCSSBHHH---HHHHHHHHHCCEE-E--EEEEECSSCTTEEEEESSCTTEEEETTSEEEEEEEECSE------
T ss_pred CceeCCCcCCCCHHH---HHHHHHHCCCeEe-e--EEeeCCCCCCCEEEEEcCCCCCCccCCCEEEEEEeCCCc------
Confidence 345556 45677665 4455666677654 1 1223455667766543 2234678888875210
Q ss_pred ccCcccCCCC--CHHHHHHHHHHhCCC
Q psy9348 211 ASGPTVLNED--LWSDARDIVIKYGLQ 235 (308)
Q Consensus 211 aSGPt~pd~~--t~~da~~il~~y~l~ 235 (308)
-++||-. |++||...|+..||.
T Consensus 74 ---v~vPdv~G~~~~~A~~~L~~~Gl~ 97 (139)
T 2kuf_A 74 ---FVMPDLSGMFWVDAEPRLRALGWT 97 (139)
T ss_dssp ---EECCCCCSCCHHHHHHHHHHHTCC
T ss_pred ---ccCCccCCCCHHHHHHHHHHcCCc
Confidence 2677765 899999999999994
No 48
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}
Probab=21.79 E-value=97 Score=30.52 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=29.7
Q ss_pred ceecccCcEEEEEechhHHHHHHHHHHHhcccccceEEEec
Q psy9348 37 QTVLIKNNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVP 77 (308)
Q Consensus 37 ~~~~l~~~i~vvg~GKAa~~MA~a~~~~lg~~i~~G~Vv~p 77 (308)
+.+.+..||.|+|+|+-+..+|.-+.+..+-.+.+-+++-|
T Consensus 8 ~~~~~~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~ 48 (480)
T 2ph5_A 8 KKILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAA 48 (480)
T ss_dssp TCBCCCSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEES
T ss_pred ceecCCCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEecc
Confidence 45667779999999999999999988875433333444444
No 49
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3
Probab=21.42 E-value=1.6e+02 Score=25.61 Aligned_cols=40 Identities=25% Similarity=0.257 Sum_probs=30.7
Q ss_pred cccchHhhhhcCCeEEEEEEecCCCCCCCccccCcccCCCCCHHHHHHHHHHhCC
Q psy9348 180 VKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGL 234 (308)
Q Consensus 180 vKGG~La~~~~pa~v~sLilSDV~Gd~l~~IaSGPt~pd~~t~~da~~il~~y~l 234 (308)
+..|.+.+...+.+.+.|-.=| ||. .....++.+|++|++
T Consensus 29 ~~~g~~~~~~~~~k~V~LTFDD-----------Gp~----~~~~~il~iL~~~~v 68 (254)
T 2iw0_A 29 VPVGTPILQCTQPGLVALTYDD-----------GPF----TFTPQLLDILKQNDV 68 (254)
T ss_dssp CCSSSEECSCSSSSEEEEEEES-----------CSC----TTHHHHHHHHHHHTC
T ss_pred cCCCcceecCCCCCEEEEEecc-----------Cch----hhHHHHHHHHHHcCC
Confidence 6777777777777888887755 554 247789999999987
No 50
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=21.34 E-value=55 Score=18.41 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=11.6
Q ss_pred CChHHHHHHHHhhc
Q psy9348 165 ANIKELNKVRKKLS 178 (308)
Q Consensus 165 A~I~EiN~VRkhLS 178 (308)
.+|+|-|.+|..|.
T Consensus 2 ~siEEtnk~r~~lG 15 (21)
T 3plv_C 2 LSIEETNELRASLG 15 (26)
T ss_dssp CCHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHcC
Confidence 57999999998764
No 51
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=20.94 E-value=87 Score=18.30 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=19.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCC
Q psy9348 143 SPKSPLSLEDKLKTIKLLVQSGAN 166 (308)
Q Consensus 143 ~P~~gitLedk~~~~~~Ll~sGA~ 166 (308)
+|....||.++-++-..|++.|-+
T Consensus 1 cpss~~sL~EkHkILHrLLQ~~sP 24 (26)
T 3bej_E 1 CPSSHSSLTERHKILHRLLQEGSP 24 (26)
T ss_pred CCCchhhHHHHHHHHHHHHHcCCC
Confidence 466678999999999999988744
No 52
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=20.62 E-value=2.4e+02 Score=22.41 Aligned_cols=49 Identities=31% Similarity=0.394 Sum_probs=33.2
Q ss_pred hcCCCCCEEEEEEeCCccccccCCCCCCCHHHHHHHHHHHHhCCCChHHHHHHHHhhcccccchHhhhh
Q psy9348 121 KHCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLAEIV 189 (308)
Q Consensus 121 ~~~~~~Dlvl~LISGGgSALl~~P~~gitLedk~~~~~~Ll~sGA~I~EiN~VRkhLS~vKGG~La~~~ 189 (308)
..++++|+| +.||..|.. .+..+..+.+.+.|+++- -+..-++. |++.+
T Consensus 78 ~~~~~~d~v-i~iS~sG~t-----------~~~~~~~~~ak~~g~~vi-------~IT~~~~s-l~~~a 126 (180)
T 1jeo_A 78 PSYEKDDLL-ILISGSGRT-----------ESVLTVAKKAKNINNNII-------AIVCECGN-VVEFA 126 (180)
T ss_dssp CCCCTTCEE-EEEESSSCC-----------HHHHHHHHHHHTTCSCEE-------EEESSCCG-GGGGC
T ss_pred ccCCCCCEE-EEEeCCCCc-----------HHHHHHHHHHHHCCCcEE-------EEeCCCCh-HHHhC
Confidence 456788865 556665542 467788888889998873 34555666 77665
No 53
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=20.30 E-value=55 Score=24.50 Aligned_cols=38 Identities=13% Similarity=0.290 Sum_probs=24.4
Q ss_pred HHHHHHHHhCCCccchHHHHHHHccCCCCCCCCCCCCeeEEEEech
Q psy9348 224 DARDIVIKYGLQNKVSKSVMTILSHETPHQDTKYFENVHNHIIGNN 269 (308)
Q Consensus 224 da~~il~~y~l~~~lp~~v~~~L~~~~~~~~~~~~~~~~~~iig~n 269 (308)
-|...+++|+....+...+++.|.+ .|....+.|||.|
T Consensus 24 ~a~~al~~~~~ek~iA~~IK~~fD~--------kyg~~WhciVG~~ 61 (89)
T 3rjs_A 24 CANQALEKYNIEKDIAAFIKKEFDR--------KHNPTWHCVVGRN 61 (89)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHH--------HHCSCCEEEEESS
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHhc--------ccCCCCEEEEecC
Confidence 3667789998754444555555543 4566778888875
No 54
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=20.15 E-value=93 Score=26.61 Aligned_cols=46 Identities=11% Similarity=0.123 Sum_probs=36.3
Q ss_pred CceEEEecCCCCCCCHhhHHHHHHHHHHHhcCCCCCEEEEEEeCCcc-ccccCC
Q psy9348 92 SEIEIRECARNNLPDEASCQNTQLIQNFVKHCTKDDVVLVLISGGGS-ACLSSP 144 (308)
Q Consensus 92 ~~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgS-ALl~~P 144 (308)
..|.|+=++ . -+|+.-.++|+++=+.+.+.+ +.||+|||. -+|++-
T Consensus 14 ~~I~Vfg~s-~-~~~~~~~~~A~~lg~~la~~g-----~~lv~GGG~~GlM~a~ 60 (189)
T 3sbx_A 14 WTVAVYCAA-A-PTHPELLELAGAVGAAIAARG-----WTLVWGGGHVSAMGAV 60 (189)
T ss_dssp CEEEEECCS-S-CCCHHHHHHHHHHHHHHHHTT-----CEEEECCBCSHHHHHH
T ss_pred eEEEEEEeC-C-CCChHHHHHHHHHHHHHHHCC-----CEEEECCCccCHHHHH
Confidence 468888654 5 889999999999998887654 579999998 776654
No 55
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=20.06 E-value=73 Score=28.94 Aligned_cols=44 Identities=7% Similarity=0.128 Sum_probs=31.9
Q ss_pred ceEEEecCCCCCCCHhhHHHHHHHHHHHhcCC-C-CCEEEEEEeCCccc
Q psy9348 93 EIEIRECARNNLPDEASCQNTQLIQNFVKHCT-K-DDVVLVLISGGGSA 139 (308)
Q Consensus 93 ~i~v~ega~HP~Pd~~s~~Aa~~il~~~~~~~-~-~Dlvl~LISGGgSA 139 (308)
.++++. .+-+++-+..+++.|.+.+++.. . +..+.+-+|||.|-
T Consensus 21 ~M~i~i---~~~~~~la~~aA~~i~~~i~~a~~~~~~~~~l~LsgGsTP 66 (289)
T 3hn6_A 21 SMRLII---RPTYEDISKWAANHVAQKINEFSPTKENPFILGLPTGSSP 66 (289)
T ss_dssp SCEEEE---ESSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSSTT
T ss_pred ceEEEE---ECCHHHHHHHHHHHHHHHHHHHhhccCCcEEEEECCCccH
Confidence 345443 35588899999999999998743 2 33567778999874
No 56
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=20.05 E-value=1.4e+02 Score=23.14 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=32.7
Q ss_pred EEEEechHHHHHHHHHHHHHCCCcEEEc-CCCccchHHHHHHH
Q psy9348 263 NHIIGNNRAALLGAKWKAESLGFQTVIL-SSDIEGLGDDICRG 304 (308)
Q Consensus 263 ~~iig~n~~al~aA~~~A~~~G~~~~il-~~~l~Gea~~va~~ 304 (308)
-.||.|..+.+..+.+.-.++||.+..+ .+..+.|-+++-+.
T Consensus 54 iliisndkqllkemlelisklgykvflllqdqdeneleefkrk 96 (134)
T 2lci_A 54 ILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRK 96 (134)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHH
T ss_pred EEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHH
Confidence 3688888899999999999999999765 45556666666554
Done!