RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9348
(308 letters)
>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural
genomics/proteomics in RSGI, NPPSFA; 2.10A {Pyrococcus
horikoshii}
Length = 440
Score = 210 bits (535), Expect = 3e-65
Identities = 100/306 (32%), Positives = 159/306 (51%), Gaps = 15/306 (4%)
Query: 7 IYEAAVSAVNGQNLIQANVRLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFR 66
+ A+ A + + V++ +K+I++ + IK VY+I GKA MA IE +
Sbjct: 13 LVGEAIKAADPYRAVLNAVKVSDDKIIVQGKEFEIKGKVYVIALGKAACEMARAIEDILD 72
Query: 67 PQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTKD 126
+ G+ +G LK I++ E + +PDE S + + + ++
Sbjct: 73 VED--GVAVTKYGYGKELKR-------IKVIEAG-HPIPDEKSILGAKEALSILNRAREN 122
Query: 127 DVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLA 186
D+V +LISGGGSA P+ +SLED T LL++SGA I E+N VRK +S VKGG+LA
Sbjct: 123 DIVFILISGGGSALFELPEEGISLEDLKLTTDLLLKSGAKIHEINTVRKHISKVKGGKLA 182
Query: 187 EIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSVMTIL 246
+++ + LIISD+VGD L+ IASGPTV + + DA+ I+ Y + KV +SV +
Sbjct: 183 KMIKGTG-IVLIISDVVGDNLEAIASGPTVKDPTTFEDAKRILELYDIWEKVPESVRLHI 241
Query: 247 S----HETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDIC 302
E + NVHN +I +N + +A+ LGF+ I+++ +EG D
Sbjct: 242 ERGLRGEVEETLKEDLPNVHNFLIASNSISCEAIAREAQRLGFKAYIMTTTLEGEAKDAG 301
Query: 303 RGYVDL 308
+
Sbjct: 302 LFIGSI 307
>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31),
structural genomics, center for structural genomics,
JCSG; 2.53A {Thermotoga maritima} SCOP: c.118.1.1
Length = 429
Score = 198 bits (503), Expect = 1e-60
Identities = 93/307 (30%), Positives = 151/307 (49%), Gaps = 25/307 (8%)
Query: 2 QEIKLIYEAAVSAVNGQNLIQANVRLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEI 61
+ I + ++ AV ++ + + V L+ GKA MA
Sbjct: 21 KLAIEIVKKSIEAVFPDRAVKETLPKLN------------LDRVILVAVGKAAWRMAKAA 68
Query: 62 EAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVK 121
+ + KG++ +G + EI E + +PDE + + T+ + V
Sbjct: 69 YEVLGKKIRKGVVVTKYGHS------EGPIDDFEIYEAG-HPVPDENTIKTTRRVLELVD 121
Query: 122 HCTKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVK 181
++D VL L+SGGGS+ P +SLE+ K L++SGA+I+E+N VRK LS VK
Sbjct: 122 QLNENDTVLFLLSGGGSSLFELPLEGVSLEEIQKLTSALLKSGASIEEINTVRKHLSQVK 181
Query: 182 GGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKS 241
GG+ AE V+PA +V+L++SD++GD L IASGP + DA ++ KYG+ + S+S
Sbjct: 182 GGRFAERVFPAKVVALVLSDVLGDRLDVIASGPAWPDSSTSEDALKVLEKYGI--ETSES 239
Query: 242 VMTILSHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDI 301
V + ETP K+ NV H+IGN + AK A+ GF I+++ ++ +
Sbjct: 240 VKRAILQETP----KHLSNVEIHLIGNVQKVCDEAKSLAKEKGFNAEIITTSLDCEAREA 295
Query: 302 CRGYVDL 308
R +
Sbjct: 296 GRFIASI 302
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 6e-11
Identities = 52/366 (14%), Positives = 108/366 (29%), Gaps = 127/366 (34%)
Query: 6 LIYEAAVSAVN-----GQNLIQANV-RLEK-NKLIIRDQTVL--IKNNVYLI-----GFG 51
++ + + Q + NV RL+ KL + L ++ ++ G G
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL----RQALLELRPAKNVLIDGVLGSG 162
Query: 52 KAVLGMAV----EIEAMFRPQRLKGILSVPFG----SVG-------ILKPQFNKNSEIEI 96
K + + V +++ F ++ +L+ +I+
Sbjct: 163 KTWVALDVCLSYKVQCKM-----------DFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 97 RECARN----NLPDEAS-----------------C-------QNTQLIQNFVKHC----- 123
+R+ N+ C QN + F C
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 124 TKDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQS-GANIKELNKVRKKLSDVKG 182
T+ V +S + +S ++L + LL++ ++L + + +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 183 GQLAEIV--YPATL----------VSLIISDIVG--DP------LQDIASGPTVLNED-- 220
+AE + AT ++ II + +P ++ V
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS----VFPPSAH 386
Query: 221 --------LW-----SDARDIV---IKYGLQNKVSK----SVMTILSHETPHQDTKYFEN 260
+W SD +V KY L K K S+ +I + +Y
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY--A 444
Query: 261 VHNHII 266
+H I+
Sbjct: 445 LHRSIV 450
Score = 36.8 bits (84), Expect = 0.009
Identities = 39/286 (13%), Positives = 86/286 (30%), Gaps = 104/286 (36%)
Query: 71 KGILSVPFGSVGILKPQFNKNSEI-EIRECARN-----------NLPDEAS--------- 109
K ILSV + F N + ++++ ++ D S
Sbjct: 19 KDILSV-------FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 110 -CQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSP-------LSLEDKLKT----- 156
+ +++Q FV+ + + ++ S + + P + D+L
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLM-----SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 157 IKLLVQSGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTV 216
K V ++ K+R+ L +++ PA V + G SG T
Sbjct: 127 AKYNVSR---LQPYLKLRQALLELR---------PAKNVLI-----DGVL----GSGKTW 165
Query: 217 LNEDLWSDARDIVIKYGLQNKV----------SKSVMTILS----------HETPHQDTK 256
+ D+ ++ + K+ ++V+ +L +
Sbjct: 166 VALDV---CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 257 YFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDIC 302
+H+ R LL +K L ++L ++
Sbjct: 223 IKLRIHSIQAELRR--LLKSKPYENCL----LVL--------LNVQ 254
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.13
Identities = 31/194 (15%), Positives = 60/194 (30%), Gaps = 67/194 (34%)
Query: 111 QNTQ-------------LIQNFVKHCTKDDVV----LVLISGGG--SACLSSPKSPLSLE 151
Q TQ L + D L G +A L+S +S+E
Sbjct: 1730 QFTQPALTLMEKAAFEDLKSKGLI--PADATFAGHSL------GEYAA-LASLADVMSIE 1780
Query: 152 DKLKTIK---LLVQSGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLI--ISDIVGDP 206
++ + + +Q EL + + + G++A L ++ + G
Sbjct: 1781 SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 207 L----------QDIASGPTVLNEDLWSDARDI-----VIKYGLQNKVSKSVMTILSHETP 251
+ Q +A+G D R + V+ + K+ K + L ++
Sbjct: 1841 VEIVNYNVENQQYVAAG----------DLRALDTVTNVLNF---IKLQKIDIIELQ-KSL 1886
Query: 252 HQDTKYFENVHNHI 265
E V H+
Sbjct: 1887 S-----LEEVEGHL 1895
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 27.9 bits (63), Expect = 1.1
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 96 IRECARNNLPDEASCQNT 113
+ EC ++ C NT
Sbjct: 5 MDECKEPDVCKHGQCINT 22
Score = 26.8 bits (60), Expect = 2.5
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 98 ECARNNLPDEASCQNT 113
EC+ N +C+N
Sbjct: 46 ECSVGNPCGNGTCKNV 61
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine,
hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3
c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*
Length = 612
Score = 28.7 bits (63), Expect = 2.6
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 198 IISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVS-----KSVMTI-LSHETP 251
I +P+ + T W+ AR+ +I +N S+ + +P
Sbjct: 224 IHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSP 283
Query: 252 HQDTKYFENVHNHIIGNN 269
H + + V ++G +
Sbjct: 284 HATPEEYSQVFEMLLGGD 301
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 27.9 bits (63), Expect = 3.6
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 127 DVVLVLISGGGSACLSSPKSPL---SLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGG 183
+++ L + S L D + K++++ K + K L VK
Sbjct: 209 EMLQALFKYD-----INIYSANLENVLLDDAEIAKMIIEKHVEYKSDSY-TKDLDIVKNN 262
Query: 184 QLAEIVYPATLVSLIISDIV 203
+L EI+ + L+ + V
Sbjct: 263 KLDEIISKNKELRLMYVNCV 282
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 27.7 bits (62), Expect = 3.9
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 8/54 (14%)
Query: 127 DVVLVLISGGGSACLSSPKSPL--------SLEDKLKTIKLLVQSGANIKELNK 172
+ L L G S KS + + E + K L+ GA+IK K
Sbjct: 20 EDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTK 73
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 27.5 bits (62), Expect = 5.3
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 11/57 (19%)
Query: 127 DVVLVLISGGGSACLSSP--------KSPL---SLEDKLKTIKLLVQSGANIKELNK 172
V VL + L S + L S+ L ++LLV GA++
Sbjct: 92 ASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP 148
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 27.5 bits (62), Expect = 6.0
Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 127 DVVLVLISGGGS--ACLSSPKSPL---SLEDKLKTIKLLVQSGANIKELNK 172
D+V +L+ GGS + + +PL + +++++ + L+Q G + +
Sbjct: 193 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV 243
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 27.2 bits (61), Expect = 6.5
Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 127 DVVLVLISGGGS---ACLSSPKSPL---SLEDKLKTIKLLVQSGANIKELNK 172
+V L+ GS K+P+ + E +++ + L+Q GA+++ ++
Sbjct: 293 PIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA 344
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral
enzyme structure; HET: SFG; 1.90A {Wesselsbron virus}
PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 27.2 bits (60), Expect = 6.5
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Query: 78 FGSVGILKPQFNKNS-EIEIRECARNNLPDEASCQNTQLIQNFVKHCTKDDVVLVLISGG 136
FG + P ++ E+ ARNN+ + + L++ + K + +
Sbjct: 210 FGGGIVRVPFSRNSTHEMYYISGARNNITHMVNTTSRSLLRRMTRPSGKAIIEGDVFLPT 269
Query: 137 GSACLSSPKSPLSLEDKLKTIKLL 160
G+ ++S + E + +
Sbjct: 270 GTRSVASEAGTIDHEALKLRVDQI 293
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 27.0 bits (61), Expect = 6.8
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 127 DVVLVLISGGGSACLSSPK---SPL---SLEDKLKTIKLLVQSGANIKELNK 172
V L+ G A ++ K SPL + + LL+ GA+ + N
Sbjct: 148 ACVKKLLESG--ADVNQGKGQDSPLHAVARTASEELACLLMDFGADTQAKNA 197
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 27.1 bits (61), Expect = 7.5
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 127 DVVLVLISGGGSACLSSPK---SPL---SLEDKLKTIKLLVQSGANIKELNK 172
V L+ G A ++ K SPL + LL+ GA+ + N
Sbjct: 204 ACVKKLLESG--ADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNA 253
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 26.7 bits (60), Expect = 8.8
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 127 DVVLVLISGGGS--ACLSSPKSPL---SLEDKLKTIKLLVQSGANIKELNK 172
D L SG + S + L + + + +KLL+Q+ ++ +
Sbjct: 180 DARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY 230
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 26.8 bits (60), Expect = 9.7
Identities = 4/51 (7%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 127 DVVLVLISGGGS--ACLSSPKSPL---SLEDKLKTIKLLVQSGANIKELNK 172
+V+ +L L++ + ++ + A ++ ++
Sbjct: 304 EVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSR 354
>1rjt_A Small inducible cytokine B11; chemokine; NMR {Synthetic} SCOP:
d.9.1.1
Length = 73
Score = 25.2 bits (55), Expect = 9.8
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 122 HCTKDDVVLVLISGGGSACLSSPKSPL 148
+C K +V++ L G CL +PKS
Sbjct: 35 NCDKIEVIITLKENKGQRCL-NPKSKQ 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.381
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,526,528
Number of extensions: 272263
Number of successful extensions: 778
Number of sequences better than 10.0: 1
Number of HSP's gapped: 765
Number of HSP's successfully gapped: 84
Length of query: 308
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 215
Effective length of database: 4,105,140
Effective search space: 882605100
Effective search space used: 882605100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.9 bits)