RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9348
         (308 letters)



>d2b8na1 c.118.1.1 (A:4-417) Putative glycerate kinase (hypothetical
           protein TM1585) {Thermotoga maritima [TaxId: 2336]}
          Length = 414

 Score =  222 bits (566), Expect = 2e-70
 Identities = 94/302 (31%), Positives = 151/302 (50%), Gaps = 25/302 (8%)

Query: 7   IYEAAVSAVNGQNLIQANVRLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFR 66
           I + ++ AV     ++  +                 + V L+  GKA   MA     +  
Sbjct: 11  IVKKSIEAVFPDRAVKETLPKLN------------LDRVILVAVGKAAWRMAKAAYEVLG 58

Query: 67  PQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTKD 126
            +  KG++   +G             + EI E A + +PDE + + T+ +   V    ++
Sbjct: 59  KKIRKGVVVTKYGHSE------GPIDDFEIYE-AGHPVPDENTIKTTRRVLELVDQLNEN 111

Query: 127 DVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLA 186
           D VL L+SGGGS+    P   +SLE+  K    L++SGA+I+E+N VRK LS VKGG+ A
Sbjct: 112 DTVLFLLSGGGSSLFELPLEGVSLEEIQKLTSALLKSGASIEEINTVRKHLSQVKGGRFA 171

Query: 187 EIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSVMTIL 246
           E V+PA +V+L++SD++GD L  IASGP   +     DA  ++ KYG+  + S+SV   +
Sbjct: 172 ERVFPAKVVALVLSDVLGDRLDVIASGPAWPDSSTSEDALKVLEKYGI--ETSESVKRAI 229

Query: 247 SHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDICRGYV 306
             ETP    K+  NV  H+IGN +     AK  A+  GF   I+++ ++    +  R   
Sbjct: 230 LQETP----KHLSNVEIHLIGNVQKVCDEAKSLAKEKGFNAEIITTSLDCEAREAGRFIA 285

Query: 307 DL 308
            +
Sbjct: 286 SI 287


>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 43

 Score = 27.0 bits (60), Expect = 0.41
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 94  IEIRECARNNLPDEASCQNT 113
           +++ EC   ++     C NT
Sbjct: 3   VDMDECKEPDVCKHGQCINT 22


>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 43

 Score = 25.6 bits (56), Expect = 1.1
 Identities = 5/19 (26%), Positives = 8/19 (42%)

Query: 95  EIRECARNNLPDEASCQNT 113
           ++ EC         +C NT
Sbjct: 2   DVNECLDPTTCISGNCVNT 20


>d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit
           {Thermotoga maritima [TaxId: 2336]}
          Length = 123

 Score = 26.5 bits (58), Expect = 2.7
 Identities = 10/111 (9%), Positives = 37/111 (33%)

Query: 37  QTVLIKNNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEI 96
           + V+ +     +   +  L  +++   +   +  + +      +V  L  +     E+  
Sbjct: 1   KRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLVSKSPDYGEVVD 60

Query: 97  RECARNNLPDEASCQNTQLIQNFVKHCTKDDVVLVLISGGGSACLSSPKSP 147
               +    D     N + I++ +KH   +++ +  +       ++     
Sbjct: 61  EVEVQKEGEDLVIAFNPKFIEDVLKHIETEEIEMNFVDSTSPCQINPLDIS 111


>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces
           clavuligerus [TaxId: 1901]}
          Length = 299

 Score = 26.5 bits (57), Expect = 4.0
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 100 ARNNLPDEASCQNT-QLIQNFVK-HCTKDDVVLVLISGG 136
           +R  LP+  +       ++  V    T  D  LV++SGG
Sbjct: 4   SRRILPEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGG 42


>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine
           O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 382

 Score = 26.1 bits (57), Expect = 6.1
 Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 198 IISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVS-----KSVMTI-LSHETP 251
           I      +P+    +  T      W+ AR+ +I    +N         S+    +   +P
Sbjct: 214 IHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSP 273

Query: 252 HQDTKYFENVHNHII---GNNR 270
           H   + +  V   ++    + R
Sbjct: 274 HATPEEYSQVFEMLLGGDPSVR 295


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.136    0.381 

Gapped
Lambda     K      H
   0.267   0.0571    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,081,761
Number of extensions: 49875
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 9
Length of query: 308
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,240,546
Effective search space: 276641758
Effective search space used: 276641758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)