BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9351
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
pdb|2D4W|B Chain B, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
Length = 504
Score = 251 bits (642), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 128/283 (45%), Positives = 176/283 (62%), Gaps = 13/283 (4%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFS 73
AID+GT+S R IVF +G++ + Q+ Q FP GWVE +P +I N E +
Sbjct: 6 AIDQGTTSSRAIVFDH-SGEIYSTGQLEHDQIFPRAGWVEHNPEQIW---NNVREVVGLA 61
Query: 74 ACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEV 133
L + DI AVG+TNQRE+ + WDK TG+P+YN+IVW D RT ++ E+
Sbjct: 62 LTRGNLTHE-----DIAAVGITNQRETAVVWDKTTGKPVYNAIVWQDTRTQKIVD---EL 113
Query: 134 VPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTG 193
++ + GLPL+ YFS KI W+++NV +E ++ G DTW++WN+TG
Sbjct: 114 GGDEGAEKYKSIVGLPLATYFSGPKIKWILDNVEGAREKAEKGDLLFGNTDTWVLWNMTG 173
Query: 194 GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFV-SGP 252
G +GG ++TDV+NASRTMLM+++TL W + IP+ +LP I SSSE+YGH G
Sbjct: 174 GTEGGVHVTDVTNASRTMLMDLDTLSWREDIAADMGIPLSMLPDIRSSSEVYGHGRPRGL 233
Query: 253 LKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295
+ GVPI+G LGDQ AA GQ C + G AK+TYGTG FLL NTG
Sbjct: 234 VPGVPIAGILGDQQAATFGQACFEVGQAKNTYGTGNFLLLNTG 276
>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLB|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLC|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLD|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLE|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLF|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BOT|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate
Length = 501
Score = 239 bits (611), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 124/284 (43%), Positives = 170/284 (59%), Gaps = 17/284 (5%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFS 73
A+D+GT+S R +V +++ Q Q +P GWVE DPMEI A Q S
Sbjct: 8 ALDQGTTSSRAVVMDH-DANIISVSQREFEQIYPKPGWVEHDPMEIWA--------TQSS 58
Query: 74 ACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEV 133
VE L + I I A+G+TNQRE+TI W+K TG+P+YN+IVW RT E +
Sbjct: 59 TLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKR- 117
Query: 134 VPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTG 193
+ ++Y+ GL + PYFS K+ W++++V +E + GTVDTW+IW +T
Sbjct: 118 --DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQ 175
Query: 194 GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVSGPL 253
G+ ++TD +NASRTML NI TL+WD + IP ++LP + SSE+YG G
Sbjct: 176 GR---VHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGK 232
Query: 254 KG--VPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295
G +PISG GDQ AAL GQ C+K G+AK+TYGTGCF+L NTG
Sbjct: 233 GGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTG 276
>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
Length = 501
Score = 239 bits (611), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/284 (43%), Positives = 170/284 (59%), Gaps = 17/284 (5%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFS 73
A+D+GT+S R +V +++ Q Q +P GWVE DPMEI A Q S
Sbjct: 8 ALDQGTTSSRAVVMDH-DANIISVSQREFEQIYPKPGWVEHDPMEIWA--------TQSS 58
Query: 74 ACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEV 133
VE L + I I A+G+TNQRE+TI W+K TG+P+YN+IVW RT E +
Sbjct: 59 TLVEVLTKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKR- 117
Query: 134 VPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTG 193
+ ++Y+ GL + PYFS K+ W++++V +E + GTVDTW+IW +T
Sbjct: 118 --DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQ 175
Query: 194 GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVSGPL 253
G+ ++TD +NASRTML NI TL+WD + IP ++LP + SSE+YG G
Sbjct: 176 GR---VHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGK 232
Query: 254 KG--VPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295
G +PISG GDQ AAL GQ C+K G+AK+TYGTGCF+L NTG
Sbjct: 233 GGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTG 276
>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
Length = 501
Score = 238 bits (606), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 123/284 (43%), Positives = 171/284 (60%), Gaps = 17/284 (5%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFS 73
A+D+GT+S R +V +++ Q Q +P GWVE DPMEI A + T+
Sbjct: 8 ALDQGTTSSRAVVMDH-DANIISVSQREFEQIYPKPGWVEHDPMEIWATQSWTL------ 60
Query: 74 ACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEV 133
VE L + I I A+G+TNQRE+TI W+K TG+P+YN+IVW RT E +
Sbjct: 61 --VEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKR- 117
Query: 134 VPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTG 193
+ ++Y+ GL + PYFS K+ W++++V +E + GTVDTW+IW +T
Sbjct: 118 --DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQ 175
Query: 194 GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVSGPL 253
G+ ++TD +NASRTML NI TL+WD + IP ++LP + SSE+YG G
Sbjct: 176 GR---VHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGK 232
Query: 254 KG--VPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295
G +PISG GDQ AAL GQ C+K G+AK+TYGTGCF+L NTG
Sbjct: 233 GGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTG 276
>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|B Chain B, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|E Chain E, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|G Chain G, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|C Chain C, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|D Chain D, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|F Chain F, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|H Chain H, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
Length = 526
Score = 237 bits (605), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 125/287 (43%), Positives = 172/287 (59%), Gaps = 21/287 (7%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFS 73
A+D+GT+S R +V +++ Q Q +P GWVE DPMEI A Q S
Sbjct: 8 ALDQGTTSSRAVVMDH-DANIISVSQREFEQIYPKPGWVEHDPMEIWA--------TQSS 58
Query: 74 ACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEV 133
VE L + I I A+G+TNQRE+TI W+K TG+P+YN+IVW RT E +
Sbjct: 59 TLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKR- 117
Query: 134 VPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTG 193
+ ++Y+ GL + PYFS K+ W++++V +E + GTVDTW+IW +T
Sbjct: 118 --DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQ 175
Query: 194 GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHF-VSGP 252
G+ ++TD +NASRTML NI TL+WD + IP ++LP + SSE+YG + G
Sbjct: 176 GR---VHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIDG- 231
Query: 253 LKG---VPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGN 296
KG +PISG GDQ AAL GQ C+K G+AK+TYGTGCF+L NTG
Sbjct: 232 -KGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGE 277
>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|O Chain O, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|C Chain C, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|D Chain D, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H46|X Chain X, Glycerol Kinase H232e With Glycerol
pdb|3H46|O Chain O, Glycerol Kinase H232e With Glycerol
Length = 506
Score = 234 bits (596), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 122/288 (42%), Positives = 164/288 (56%), Gaps = 17/288 (5%)
Query: 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQ 71
V AID+GT+S R I+F GK + Q Q FP GWVE + EI V I
Sbjct: 7 VMAIDQGTTSSRAIIFDR-NGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGA- 64
Query: 72 FSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKIL 131
E GI P I +G+TNQRE+T+ WDK TG+P+ N+IVW +R +S + L
Sbjct: 65 -------FIESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVW-QSRQSSPIADQL 116
Query: 132 EVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNL 191
+V + + + GL + YFSA K+ WL++N+ +E D GT+D+W++W L
Sbjct: 117 KV--DGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKL 174
Query: 192 TGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVSG 251
T DG ++TD SNASRTML NI LEWD + IP +LP + S+SE+YGH S
Sbjct: 175 T---DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSY 231
Query: 252 PLKG--VPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGNH 297
G VPI+G GDQ AAL GQ + G+ K+TYGTG F++ NTG
Sbjct: 232 EFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEE 279
>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
pdb|3FLC|X Chain X, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
Length = 518
Score = 234 bits (596), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 122/288 (42%), Positives = 164/288 (56%), Gaps = 17/288 (5%)
Query: 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQ 71
V AID+GT+S R I+F GK + Q Q FP GWVE + EI V I
Sbjct: 19 VMAIDQGTTSSRAIIFDR-NGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGA- 76
Query: 72 FSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKIL 131
E GI P I +G+TNQRE+T+ WDK TG+P+ N+IVW +R +S + L
Sbjct: 77 -------FIESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVW-QSRQSSPIADQL 128
Query: 132 EVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNL 191
+V + + + GL + YFSA K+ WL++N+ +E D GT+D+W++W L
Sbjct: 129 KV--DGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKL 186
Query: 192 TGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVSG 251
T DG ++TD SNASRTML NI LEWD + IP +LP + S+SE+YGH S
Sbjct: 187 T---DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSY 243
Query: 252 PLKG--VPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGNH 297
G VPI+G GDQ AAL GQ + G+ K+TYGTG F++ NTG
Sbjct: 244 RFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEE 291
>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
pdb|3D7E|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
Length = 505
Score = 234 bits (596), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 122/288 (42%), Positives = 164/288 (56%), Gaps = 17/288 (5%)
Query: 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQ 71
V AID+GT+S R I+F GK + Q Q FP GWVE + EI V I
Sbjct: 6 VMAIDQGTTSSRAIIFDR-NGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGA- 63
Query: 72 FSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKIL 131
E GI P I +G+TNQRE+T+ WDK TG+P+ N+IVW +R +S + L
Sbjct: 64 -------FIESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVW-QSRQSSPIADQL 115
Query: 132 EVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNL 191
+V + + + GL + YFSA K+ WL++N+ +E D GT+D+W++W L
Sbjct: 116 KV--DGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKL 173
Query: 192 TGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVSG 251
T DG ++TD SNASRTML NI LEWD + IP +LP + S+SE+YGH S
Sbjct: 174 T---DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSY 230
Query: 252 PLKG--VPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGNH 297
G VPI+G GDQ AAL GQ + G+ K+TYGTG F++ NTG
Sbjct: 231 AFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEE 278
>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol
pdb|3H3N|O Chain O, Glycerol Kinase H232r With Glycerol
pdb|3H3O|O Chain O, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|X Chain X, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|B Chain B, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|C Chain C, Glycerol Kinase H232r With Ethylene Glycol
Length = 506
Score = 234 bits (596), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 122/288 (42%), Positives = 164/288 (56%), Gaps = 17/288 (5%)
Query: 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQ 71
V AID+GT+S R I+F GK + Q Q FP GWVE + EI V I
Sbjct: 7 VMAIDQGTTSSRAIIFDR-NGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGA- 64
Query: 72 FSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKIL 131
E GI P I +G+TNQRE+T+ WDK TG+P+ N+IVW +R +S + L
Sbjct: 65 -------FIESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVW-QSRQSSPIADQL 116
Query: 132 EVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNL 191
+V + + + GL + YFSA K+ WL++N+ +E D GT+D+W++W L
Sbjct: 117 KV--DGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKL 174
Query: 192 TGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVSG 251
T DG ++TD SNASRTML NI LEWD + IP +LP + S+SE+YGH S
Sbjct: 175 T---DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSY 231
Query: 252 PLKG--VPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGNH 297
G VPI+G GDQ AAL GQ + G+ K+TYGTG F++ NTG
Sbjct: 232 RFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEE 279
>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase
pdb|1R59|X Chain X, Enterococcus Casseliflavus Glycerol Kinase
Length = 505
Score = 233 bits (595), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 122/288 (42%), Positives = 164/288 (56%), Gaps = 17/288 (5%)
Query: 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQ 71
V AID+GT+S R I+F GK + Q Q FP GWVE + EI V I
Sbjct: 6 VMAIDQGTTSSRAIIFDR-NGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGA- 63
Query: 72 FSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKIL 131
E GI P I +G+TNQRE+T+ WDK TG+P+ N+IVW +R +S + L
Sbjct: 64 -------FIESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVW-QSRQSSPIADQL 115
Query: 132 EVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNL 191
+V + + + GL + YFSA K+ WL++N+ +E D GT+D+W++W L
Sbjct: 116 KV--DGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKL 173
Query: 192 TGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVSG 251
T DG ++TD SNASRTML NI LEWD + IP +LP + S+SE+YGH S
Sbjct: 174 T---DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSY 230
Query: 252 PLKG--VPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGNH 297
G VPI+G GDQ AAL GQ + G+ K+TYGTG F++ NTG
Sbjct: 231 HFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEE 278
>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
pdb|1XUP|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
Length = 487
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/288 (42%), Positives = 164/288 (56%), Gaps = 17/288 (5%)
Query: 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQ 71
V AID+GT+S R I+F GK + Q Q FP GWVE + EI V I
Sbjct: 2 VMAIDQGTTSSRAIIFDR-NGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGA- 59
Query: 72 FSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKIL 131
E GI P I +G+TNQRE+T+ WDK TG+P+ N+IVW +R +S + L
Sbjct: 60 -------FIESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVW-QSRQSSPIADQL 111
Query: 132 EVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNL 191
+V + + + GL + YFSA K+ WL++N+ +E D GT+D+W++W L
Sbjct: 112 KV--DGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKL 169
Query: 192 TGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVSG 251
T DG ++TD SNASRTML NI LEWD + IP +LP + S+SE+YGH S
Sbjct: 170 T---DGQVHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSY 226
Query: 252 PLKG--VPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGNH 297
G VPI+G GDQ AAL GQ + G+ K+TYGTG F++ NTG
Sbjct: 227 HFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEE 274
>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
pdb|2DPN|B Chain B, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
Length = 495
Score = 229 bits (585), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/289 (44%), Positives = 164/289 (56%), Gaps = 24/289 (8%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFS 73
A+D+GT+S R I+F+ L G+ VA + Q +P GWVE DP+EI
Sbjct: 6 ALDQGTTSSRAILFT-LEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETT--------LW 56
Query: 74 ACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEV 133
A E L+ G E +++A+G+TNQRE+T+ WD+ TG+PL+N+IVW D RTT E +
Sbjct: 57 AAREVLRRAGAEAGEVLALGITNQRETTLLWDRKTGKPLHNAIVWQDRRTTPLCEAL--- 113
Query: 134 VPNKNKNYLAPL----CGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIW 189
L PL GL PYFS K+ WL+ NVP +K + GTVDTW+IW
Sbjct: 114 ----RAKGLEPLFRERTGLLFDPYFSGTKLVWLLENVPGLKARAEGGGVAFGTVDTWLIW 169
Query: 190 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFV 249
NLTGGK + TD +NASRT+L N+ TL WDP L IP +LP + S +G +
Sbjct: 170 NLTGGK---VHATDPTNASRTLLFNLHTLAWDPELLEALGIPAALLPEVRPSDGDFGETL 226
Query: 250 SGPLKG-VPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGNH 297
L VPI G LGDQ AAL GQ L G K TYGTG FLL NTG
Sbjct: 227 PELLGAPVPIRGVLGDQQAALFGQAALGGGEGKCTYGTGAFLLLNTGKR 275
>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|B Chain B, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|C Chain C, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|D Chain D, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
Length = 520
Score = 222 bits (565), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/291 (41%), Positives = 164/291 (56%), Gaps = 20/291 (6%)
Query: 9 GPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIE 68
G + AID+GT+S R IVF K+ Q Q FP GWVE DP EI V T++
Sbjct: 25 GGYILAIDQGTTSTRAIVFDG-NQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVK 83
Query: 69 ACQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLE 128
E +++ GI DI A+G+TNQRE+ + WD+ TG+P++N+IVW D RT + +
Sbjct: 84 --------EAIEKSGITANDIAAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCD 135
Query: 129 KILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWII 188
K+ + K GL L PYFS K+NWL++NV + + C GT+DT++I
Sbjct: 136 KLKKKGLEKT---FVKKTGLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLI 192
Query: 189 WNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHF 248
W LTGG+ + TD +NASRT+L NI WD L +P + LP + + +G
Sbjct: 193 WRLTGGE---CFCTDATNASRTLLYNIAENAWDDELTEVLRVPKEXLPEVKDCAADFG-- 247
Query: 249 VSGPL---KGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGN 296
V+ P +PI G GDQ AA +GQ C KPG KSTYGTGCF L NTG
Sbjct: 248 VTDPSLFGAAIPILGVAGDQQAATIGQACFKPGXLKSTYGTGCFALLNTGK 298
>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
pdb|2ZF5|Y Chain Y, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
Length = 497
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 165/286 (57%), Gaps = 22/286 (7%)
Query: 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEAC 70
V ++DEGT+S R I+F + Q Q +P GWVE +P EI
Sbjct: 4 FVLSLDEGTTSARAIIFDR-ESNIHGIGQYEFPQHYPRPGWVEHNPEEIWD--------A 54
Query: 71 QFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKI 130
Q A + ++ IEP I A+GVTNQRE+T+ WDK G+PLYN+IVW RT +E+I
Sbjct: 55 QLRAIKDAIQSARIEPNQIAAIGVTNQRETTLVWDK-DGKPLYNAIVWQCRRTAEMVEEI 113
Query: 131 LEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWN 190
+ + GL YFSA K+ WL++NVP ++E ++ GTVDT++I+
Sbjct: 114 ----KREYGTMIKEKTGLVPDAYFSASKLKWLLDNVPGLREKAEKGEVMFGTVDTFLIYR 169
Query: 191 LTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVS 250
LTG +++TD SNASRTML NI+ L+WD L F IP +LP + SSE+YG +
Sbjct: 170 LTG-----EHVTDYSNASRTMLFNIKKLDWDDELLELFDIPESVLPEVRESSEVYG-YTK 223
Query: 251 GPLKG--VPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNT 294
L G +P+SG GDQ AAL GQ + G+ K+TYGTG F+L NT
Sbjct: 224 KELLGAEIPVSGDAGDQQAALFGQAAFEAGMVKATYGTGSFILVNT 269
>pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|B Chain B, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|C Chain C, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|D Chain D, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3GE1|A Chain A, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|B Chain B, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|C Chain C, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|D Chain D, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
Length = 501
Score = 221 bits (562), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 159/288 (55%), Gaps = 23/288 (7%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFS 73
+ID+GT+S R I+F+ G++ Q Q FP GWVE D EI V +
Sbjct: 10 SIDQGTTSSRAILFNQ-KGEIAGVAQREFKQYFPQSGWVEHDANEIWTSV--------LA 60
Query: 74 ACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEV 133
E + E + I +G+TNQRE+T+ WDK TG P+Y++IVW +T S ++
Sbjct: 61 VXTEVINENDVRADQIAGIGITNQRETTVVWDKHTGRPIYHAIVWQSRQTQSICSEL--- 117
Query: 134 VPNKNKNY---LAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWN 190
K + Y GL L PYF+ K+ W+++NV +E + GT+DTW++W
Sbjct: 118 ---KQQGYEQTFRDKTGLLLDPYFAGTKVKWILDNVEGAREKAENGDLLFGTIDTWLVWK 174
Query: 191 LTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVS 250
L+G +ITD SNASRT+ NI LEWD L T+P + LP + +SSE+YG +
Sbjct: 175 LSG---KAAHITDYSNASRTLXFNIHDLEWDDELLELLTVPKNXLPEVKASSEVYGKTID 231
Query: 251 GPLKG--VPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGN 296
G VPI+G GDQ AAL GQ C + G K+TYGTG F L NTG+
Sbjct: 232 YHFYGQEVPIAGVAGDQQAALFGQACFERGDVKNTYGTGGFXLXNTGD 279
>pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|C Chain C, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|D Chain D, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
Length = 503
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 165/289 (57%), Gaps = 18/289 (6%)
Query: 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEAC 70
++ +ID+ T S + + F +V + ++ Q GW E DP+EI+ + +
Sbjct: 5 VILSIDQSTQSTK-VFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLM--- 60
Query: 71 QFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKI 130
+ ++ LK++ I +G+TNQRE+ I WD+ITG+PLYN+IVWLD R E +
Sbjct: 61 --NEGIKVLKDKYTSVI-IKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVE---ELV 114
Query: 131 LEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWN 190
E N N + G + YFSA KI WL+ N P++K+ ID IG ++TW+I+N
Sbjct: 115 TEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFN 174
Query: 191 LTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIP-MDILPTICSSSEIYGHFV 249
LT G TDV+NASRT+LM+I TL+WD +C F I M +LP I S+ +G
Sbjct: 175 LT----KGNCYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVK 230
Query: 250 SGPLK---GVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295
S + +PI+GC+GDQ +A +GQ G AK TYGTG FLL NTG
Sbjct: 231 SEHVPDYLNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTG 279
>pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
pdb|2W41|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
Length = 507
Score = 198 bits (503), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 165/289 (57%), Gaps = 18/289 (6%)
Query: 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEAC 70
++ +ID+ T S + + F +V + ++ Q GW E DP+EI+ + +
Sbjct: 9 VILSIDQSTQSTK-VFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLM--- 64
Query: 71 QFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKI 130
+ ++ LK++ I +G+TNQRE+ I WD+ITG+PLYN+IVWLD R E +
Sbjct: 65 --NEGIKVLKDK-YTSVIIKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVE---ELV 118
Query: 131 LEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWN 190
E N N + G + YFSA KI WL+ N P++K+ ID IG ++TW+I+N
Sbjct: 119 TEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFN 178
Query: 191 LTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIP-MDILPTICSSSEIYGHFV 249
LT G TDV+NASRT+LM+I TL+WD +C F I M +LP I S+ +G
Sbjct: 179 LT----KGNCYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVK 234
Query: 250 SGPLK---GVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295
S + +PI+GC+GDQ +A +GQ G AK TYGTG FLL NTG
Sbjct: 235 SEHVPDYLNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTG 283
>pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus
Acidophilus
pdb|3LL3|A Chain A, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
pdb|3LL3|B Chain B, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
Length = 504
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 39/236 (16%)
Query: 16 DEGTSSCRFIVFSALTGKLVAKHQISLGQTFP----TEGWVEQDPMEILAVVNGTIEACQ 71
D GT++ + +++ + GK VA S+ + +P G E+DP I V I
Sbjct: 10 DVGTTATKGVLYD-INGKAVA----SVSKGYPLIQTKVGQAEEDPKLIFDAVQEII---- 60
Query: 72 FSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKIL 131
+K+ + I A+ ++Q S I E L NSI W D S ++
Sbjct: 61 -FDLTQKIDGK------IAAISWSSQXHSLIGLGS-DDELLTNSITWADNCAKSIVQDA- 111
Query: 132 EVVPNKNKNYLAPL---CGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWII 188
KN+ + + G P P K+ WL N K E Q + IG + +II
Sbjct: 112 -----KNRGFAQQIYRKTGXPXHPXAPIYKLLWLKN---KKTEVFSQAQKWIG-IKEYII 162
Query: 189 WNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEI 244
+ LTG K +TD + A+ T ++N++TL WD L I + LP I +++
Sbjct: 163 FRLTG-----KLVTDTTXAAGTGILNLKTLTWDQELLDILKIKKEQLPKIAQPTKV 213
>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2ITM|B Chain B, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2NLX|A Chain A, Crystal Structure Of The Apo E. Coli Xylulose Kinase
pdb|2NLX|B Chain B, Crystal Structure Of The Apo E. Coli Xylulose Kinase
Length = 484
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 99/235 (42%), Gaps = 26/235 (11%)
Query: 15 IDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSA 74
ID GTS + I+ + G++VA L + P W EQDP + + ++A
Sbjct: 5 IDLGTSGVKVILLNE-QGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH 63
Query: 75 CVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVV 134
++ D+ A+G+ Q D L +I+W D R + V
Sbjct: 64 SLQ----------DVKALGIAGQMHGATLLDA-QQRVLRPAILWNDGRCAQECTLLEARV 112
Query: 135 PNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTGG 194
P + G + P F+A K+ W+ + P++ ID+ + ++ +TG
Sbjct: 113 PQSRV-----ITGNLMMPGFTAPKLLWVQRHEPEIFRQIDK----VLLPKDYLRLRMTG- 162
Query: 195 KDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFV 249
++ +D+S+A+ TM +++ +W ++ + D +P + SEI G +
Sbjct: 163 ----EFASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALL 213
>pdb|3HZ6|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
Violaceum
pdb|3KZB|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
Violaceum
Length = 511
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 99/239 (41%), Gaps = 24/239 (10%)
Query: 64 NGTIE--ACQFSACVEKLK----EQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIV 117
NG +E A + V+++ + G++ + A+ ++ Q ++ + D+ EPL+ +++
Sbjct: 43 NGPVEQDAGDWYDAVQRIASSWWQSGVDARRVSAIVLSGQXQNFLPLDQ-DHEPLHRAVL 101
Query: 118 WLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNR 177
+ D R E+I ++ L +P +A + L+ +A + R
Sbjct: 102 YSDKRPLKEAEEI------NARHGADNLWSALENPXTAASILPKLVFWRASFPQAFGRLR 155
Query: 178 CCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPT 237
+ +++ LTG ++ TD +NAS T L + W L + +D+ P
Sbjct: 156 HVVLGAKDYVVLRLTG-----RHATDRTNASTTGLYRPKDDAWHVELLADYGFSLDLXPR 210
Query: 238 ICSSSEIYGHFVS------GPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFL 290
+ E G + G + G P+ LGD AA LG L A GT +L
Sbjct: 211 LLEPGEQVGGVSALAARQTGFVSGTPVLCGLGDAGAATLGVGVLDDEDAYLHLGTTGWL 269
>pdb|3GG4|A Chain A, The Crystal Structure Of Glycerol Kinase From Yersinia
Pseudotuberculosis
pdb|3GG4|B Chain B, The Crystal Structure Of Glycerol Kinase From Yersinia
Pseudotuberculosis
pdb|3L0Q|A Chain A, The Crystal Structure Of Xlylulose Kinase From Yersinia
Pseudotuberculosis
pdb|3L0Q|B Chain B, The Crystal Structure Of Xlylulose Kinase From Yersinia
Pseudotuberculosis
Length = 554
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 64/162 (39%), Gaps = 25/162 (15%)
Query: 15 IDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSA 74
+D GT S R VF L G+ V + + P +VEQ I V C +A
Sbjct: 10 VDVGTGSARAGVFD-LQGRXVGQASREITXFKPKADFVEQSSENIWQAV------C--NA 60
Query: 75 CVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPL---------YNSIVWLDARTTS 125
+ + + I P + +G + S + DK G PL N IVW D R +
Sbjct: 61 VRDAVNQADINPIQVKGLGF-DATCSLVVLDK-EGNPLTVSPSGRNEQNVIVWXDHRAIT 118
Query: 126 TLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVP 167
E+I N K+ + G +SP K+ WL + P
Sbjct: 119 QAERI-----NATKHPVLEFVGGVISPEXQTPKLLWLKQHXP 155
>pdb|3I8B|A Chain A, The Crystal Structure Of Xylulose Kinase From
Bifidobacterium Adolescentis
Length = 515
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 111/306 (36%), Gaps = 75/306 (24%)
Query: 11 LVGAIDEGTSSCRFIVFSALTGKLV----AKHQISLGQTFPTEGWVEQDPMEILAVVNGT 66
LV +D T SC+ V A TG+LV AKH NGT
Sbjct: 6 LVAGVDTSTQSCKVRVTDAETGELVRFGQAKHP------------------------NGT 41
Query: 67 -IEACQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTS 125
++ + + ++ EQ D+ A+ V Q+ + D G + ++ +W D +
Sbjct: 42 SVDPSYWWSAFQEAAEQAGGLDDVSALAVGGQQHGXVILDN-QGNVIRDAXLWNDTSSAP 100
Query: 126 TLEKILE---VVPNKN-----------KNYLAPLCGLPLSPYFSALKINWLMNNVPKVKE 171
++E P ++ + ++ + P++ Y + K+ W+ N P+ +
Sbjct: 101 QAAALIEKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASY-TLTKVAWVAENEPENVK 159
Query: 172 AIDQNRCCIGTVDTWIIWNLTG------GKDGG--KYITDVSNASRTMLMNIETLEWDPM 223
I I W+ W + G G+D TD S+AS T+ + + E+
Sbjct: 160 KI----AAICLPHDWLSWRIAGYGPVAEGEDAHLEALFTDRSDASGTIYYDAASNEYRRD 215
Query: 224 LCGFFTIPMDILPTICSSSE------IYGHFVSGPLKGVPI-------SGCL-----GDQ 265
L + S +E + G + P+K P GCL GD
Sbjct: 216 LIAXVLEAAEGAKAAQSHAEAIVLPTVLGPRDAAPVKADPAIAGKNVEGGCLLAPGGGDN 275
Query: 266 HAALLG 271
A LG
Sbjct: 276 AXASLG 281
>pdb|3QDK|A Chain A, Structural Insight On Mechanism And Diverse Substrate
Selection Strategy Of Ribulokinase
pdb|3QDK|B Chain B, Structural Insight On Mechanism And Diverse Substrate
Selection Strategy Of Ribulokinase
pdb|3QDK|C Chain C, Structural Insight On Mechanism And Diverse Substrate
Selection Strategy Of Ribulokinase
pdb|3QDK|D Chain D, Structural Insight On Mechanism And Diverse Substrate
Selection Strategy Of Ribulokinase
Length = 572
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 78/201 (38%), Gaps = 36/201 (17%)
Query: 15 IDEGTSSCRFIVFSALTGKLVAKH-----QISLGQTFPT------EGWVEQDPMEILAVV 63
+D GT S R ++ G+ +A H + Q P W Q P++ + V+
Sbjct: 10 VDYGTESGRAVLIDLSNGQELADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDYVEVL 69
Query: 64 NGTIEACQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPL-----YNS--- 115
++ A +KE G++ D++ +GV + + D+ G+PL Y
Sbjct: 70 TTSVPAV--------MKESGVDADDVIGIGVDFTACTMLPVDE-EGQPLCLLAQYKDNPH 120
Query: 116 ---IVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEA 172
+W I E+ + + +L P G +S + K+ +++ V
Sbjct: 121 SWVKLWKHHAAQDKANAINEMAEKRGEAFL-PRYGGKISSEWMIAKVWQILDEAEDVYNR 179
Query: 173 IDQNRCCIGTVDTWIIWNLTG 193
DQ + D WI+ +TG
Sbjct: 180 TDQ---FLEATD-WIVSQMTG 196
>pdb|2RF8|A Chain A, Crystal Structure Of The Mutant C2a Conjugated Bile Acid
Hydrolase From Clostridium Perfringens
pdb|2RF8|B Chain B, Crystal Structure Of The Mutant C2a Conjugated Bile Acid
Hydrolase From Clostridium Perfringens
Length = 329
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 108 TGEPLYNSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVP 167
T P+YN ++W+ A S++E++ E + N N + +P+S ++W+++++
Sbjct: 98 TNIPVYNFLLWVLA-NFSSVEEVKEALKNAN------IVDIPISENIPNTTLHWMISDIT 150
Query: 168 KVKEAIDQNRCCIGTVDTWI 187
++Q + + D I
Sbjct: 151 GKSIVVEQTKEKLNVFDNNI 170
>pdb|2RG2|A Chain A, Crystal Structure Of Variant R18l Of Conjugated Bile Acid
Hydrolase From Clostridium Perfringens
Length = 328
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 108 TGEPLYNSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVP 167
T P+YN ++W+ A S++E++ E + N N + +P+S ++W+++++
Sbjct: 97 TNIPVYNFLLWVLAN-FSSVEEVKEALKNAN------IVDIPISENIPNTTLHWMISDIT 149
Query: 168 KVKEAIDQNRCCIGTVDTWI 187
++Q + + D I
Sbjct: 150 GKSIVVEQTKEKLNVFDNNI 169
>pdb|2BJF|A Chain A, Crystal Structure Of Conjugated Bile Acid Hydrolase From
Clostridium Perfringens In Complex With Reaction
Products Taurine And Deoxycholate
pdb|2BJG|A Chain A, Crystal Structure Of Conjugated Bile Acid Hydrolase From
Clostridium Perfringens In Complex With Reaction
Products Taurine And Deoxycholate
pdb|2BJG|B Chain B, Crystal Structure Of Conjugated Bile Acid Hydrolase From
Clostridium Perfringens In Complex With Reaction
Products Taurine And Deoxycholate
Length = 329
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 108 TGEPLYNSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVP 167
T P+YN ++W+ A S++E++ E + N N + +P+S ++W+++++
Sbjct: 98 TNIPVYNFLLWVLA-NFSSVEEVKEALKNAN------IVDIPISENIPNTTLHWMISDIT 150
Query: 168 KVKEAIDQNRCCIGTVDTWI 187
++Q + + D I
Sbjct: 151 GKSIVVEQTKEKLNVFDNNI 170
>pdb|1A4I|A Chain A, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
pdb|1A4I|B Chain B, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
Length = 301
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 70 CQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEK 129
C C+E +KE G V + + + KI G P+++ ++W +A T+ K
Sbjct: 147 CTPKGCLELIKETG--------VPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK 198
Query: 130 ILEVVPNKNK 139
+ NK
Sbjct: 199 TAHLDEEVNK 208
>pdb|1DIA|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIA|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIB|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIB|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIG|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
pdb|1DIG|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
Length = 306
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 70 CQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEK 129
C C+E +KE G V + + + KI G P+++ ++W +A T+ K
Sbjct: 147 CTPKGCLELIKETG--------VPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK 198
Query: 130 ILEVVPNKNK 139
+ NK
Sbjct: 199 TAHLDEEVNK 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,689,295
Number of Sequences: 62578
Number of extensions: 409387
Number of successful extensions: 810
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 31
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)