Query psy9351
Match_columns 297
No_of_seqs 146 out of 1564
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 16:56:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0554 GlpK Glycerol kinase [ 100.0 1.6E-57 3.5E-62 422.7 19.4 273 9-296 4-277 (499)
2 PTZ00294 glycerol kinase-like 100.0 7.2E-56 1.6E-60 432.3 27.0 269 11-295 3-278 (504)
3 PRK00047 glpK glycerol kinase; 100.0 7.9E-56 1.7E-60 431.5 26.6 273 7-294 2-276 (498)
4 PLN02295 glycerol kinase 100.0 7.3E-56 1.6E-60 432.9 26.2 274 11-295 1-279 (512)
5 PRK10331 L-fuculokinase; Provi 100.0 5.7E-56 1.2E-60 429.7 23.5 261 10-295 2-270 (470)
6 TIGR01314 gntK_FGGY gluconate 100.0 1.4E-55 3E-60 430.4 25.7 262 11-295 1-268 (505)
7 COG1070 XylB Sugar (pentulose 100.0 1.2E-55 2.7E-60 430.0 24.3 267 7-295 1-275 (502)
8 PF00370 FGGY_N: FGGY family o 100.0 1.5E-55 3.2E-60 392.5 21.9 239 11-271 1-245 (245)
9 TIGR02628 fuculo_kin_coli L-fu 100.0 3.2E-55 6.8E-60 423.9 23.8 259 11-294 2-268 (465)
10 TIGR01311 glycerol_kin glycero 100.0 1.1E-54 2.3E-59 423.1 26.4 269 10-295 1-272 (493)
11 PRK10939 autoinducer-2 (AI-2) 100.0 2.7E-54 5.9E-59 422.7 25.8 265 9-295 2-274 (520)
12 PRK15027 xylulokinase; Provisi 100.0 1.4E-54 3E-59 421.4 23.3 258 11-295 1-264 (484)
13 TIGR01312 XylB D-xylulose kina 100.0 8.8E-52 1.9E-56 401.4 23.9 261 13-295 1-267 (481)
14 PLN02669 xylulokinase 100.0 9.8E-52 2.1E-56 406.2 24.3 266 9-295 7-312 (556)
15 TIGR02627 rhamnulo_kin rhamnul 100.0 7.9E-52 1.7E-56 399.2 22.1 256 13-295 1-262 (454)
16 PRK04123 ribulokinase; Provisi 100.0 1.3E-51 2.7E-56 406.3 23.9 273 8-295 1-304 (548)
17 TIGR01234 L-ribulokinase L-rib 100.0 2.3E-51 5.1E-56 403.2 23.4 264 11-294 2-300 (536)
18 TIGR01315 5C_CHO_kinase FGGY-f 100.0 2.9E-51 6.2E-56 402.8 19.3 259 11-294 1-295 (541)
19 PRK10640 rhaB rhamnulokinase; 100.0 7.2E-45 1.6E-49 351.9 21.7 234 36-295 16-250 (471)
20 KOG2517|consensus 100.0 7.3E-43 1.6E-47 331.2 21.1 279 9-296 5-287 (516)
21 COG1069 AraB Ribulose kinase [ 100.0 1.7E-41 3.6E-46 319.8 18.7 264 8-295 1-286 (544)
22 KOG2531|consensus 100.0 4.9E-28 1.1E-32 223.1 17.7 263 11-295 10-311 (545)
23 TIGR00241 CoA_E_activ CoA-subs 98.6 9.3E-08 2E-12 85.4 6.8 70 11-104 1-70 (248)
24 PRK09698 D-allose kinase; Prov 98.4 2.4E-06 5.1E-11 78.3 11.4 90 8-122 2-95 (302)
25 TIGR00744 ROK_glcA_fam ROK fam 98.3 4.2E-06 9.1E-11 77.1 10.5 87 13-122 1-88 (318)
26 PRK13311 N-acetyl-D-glucosamin 98.3 7.8E-06 1.7E-10 73.2 10.6 85 12-122 2-87 (256)
27 PF00480 ROK: ROK family; Int 98.2 7.6E-06 1.6E-10 68.9 9.5 85 14-126 1-86 (179)
28 COG1940 NagC Transcriptional r 98.2 1.7E-05 3.7E-10 73.0 11.5 90 8-120 4-94 (314)
29 PRK09557 fructokinase; Reviewe 98.1 1.6E-05 3.6E-10 72.8 10.2 83 11-119 1-83 (301)
30 PRK13310 N-acetyl-D-glucosamin 98.1 1.6E-05 3.5E-10 72.9 10.1 87 12-124 2-89 (303)
31 smart00732 YqgFc Likely ribonu 97.8 8.8E-05 1.9E-09 56.2 6.8 59 12-98 3-61 (99)
32 PRK05082 N-acetylmannosamine k 97.8 0.00015 3.3E-09 66.0 9.4 87 12-126 3-91 (291)
33 PRK00292 glk glucokinase; Prov 97.6 0.00024 5.2E-09 65.6 8.5 80 10-120 2-81 (316)
34 TIGR03192 benz_CoA_bzdQ benzoy 97.5 0.00053 1.2E-08 62.3 9.0 70 10-102 32-101 (293)
35 PRK12408 glucokinase; Provisio 97.5 0.00023 4.9E-09 66.5 6.2 77 11-120 17-99 (336)
36 TIGR03286 methan_mark_15 putat 97.4 0.00065 1.4E-08 64.2 8.8 72 8-103 142-213 (404)
37 PF14574 DUF4445: Domain of un 97.4 0.00065 1.4E-08 64.8 8.7 83 11-97 2-92 (412)
38 TIGR02261 benz_CoA_red_D benzo 97.3 0.001 2.2E-08 59.7 8.5 72 11-101 2-74 (262)
39 PF01869 BcrAD_BadFG: BadF/Bad 97.3 0.00079 1.7E-08 60.7 7.2 67 13-94 1-67 (271)
40 PRK13321 pantothenate kinase; 97.2 0.0012 2.6E-08 59.2 7.9 63 12-96 2-64 (256)
41 COG2971 Predicted N-acetylgluc 97.2 0.0011 2.4E-08 60.0 7.2 69 7-91 2-71 (301)
42 PRK13318 pantothenate kinase; 97.1 0.002 4.3E-08 57.9 8.3 63 12-96 2-64 (258)
43 PRK14101 bifunctional glucokin 97.0 0.00092 2E-08 67.7 5.5 77 11-119 19-95 (638)
44 COG1924 Activator of 2-hydroxy 96.9 0.0038 8.2E-08 58.2 8.1 74 6-103 131-204 (396)
45 PF05378 Hydant_A_N: Hydantoin 96.8 0.003 6.4E-08 53.5 6.3 65 13-98 2-66 (176)
46 PF00349 Hexokinase_1: Hexokin 96.3 0.018 3.8E-07 50.0 7.9 72 11-96 64-139 (206)
47 TIGR02259 benz_CoA_red_A benzo 96.2 0.0097 2.1E-07 56.2 6.1 34 9-43 1-34 (432)
48 smart00842 FtsA Cell division 95.6 0.12 2.5E-06 44.0 9.8 54 12-68 1-57 (187)
49 PTZ00288 glucokinase 1; Provis 95.6 0.11 2.3E-06 49.8 10.3 54 8-68 24-79 (405)
50 KOG1794|consensus 95.5 0.077 1.7E-06 48.0 8.2 76 8-98 1-77 (336)
51 TIGR02707 butyr_kinase butyrat 95.3 0.075 1.6E-06 49.9 8.2 71 12-95 2-72 (351)
52 PRK09472 ftsA cell division pr 95.1 0.26 5.6E-06 47.4 11.3 57 9-68 7-66 (420)
53 TIGR00749 glk glucokinase, pro 95.0 0.041 9E-07 50.8 5.3 24 13-37 1-24 (316)
54 PRK15080 ethanolamine utilizat 94.5 0.29 6.2E-06 44.2 9.3 57 8-68 22-78 (267)
55 TIGR01174 ftsA cell division p 94.4 0.32 7E-06 45.8 9.9 55 11-68 1-58 (371)
56 PF13941 MutL: MutL protein 94.2 0.24 5.2E-06 48.0 8.7 47 12-68 2-50 (457)
57 PRK13324 pantothenate kinase; 93.8 0.37 8.1E-06 43.3 8.6 64 12-96 2-65 (258)
58 COG4972 PilM Tfp pilus assembl 93.2 0.31 6.6E-06 45.0 6.9 63 4-68 4-69 (354)
59 PLN02596 hexokinase-like 92.9 0.46 9.9E-06 46.6 8.2 52 11-68 97-153 (490)
60 PLN02914 hexokinase 92.7 0.4 8.7E-06 47.0 7.5 55 10-68 95-152 (490)
61 TIGR01175 pilM type IV pilus a 92.6 0.93 2E-05 42.1 9.6 58 10-68 3-62 (348)
62 PLN02362 hexokinase 92.6 0.5 1.1E-05 46.5 8.0 53 10-68 95-152 (509)
63 PLN02405 hexokinase 92.3 0.59 1.3E-05 45.9 8.1 55 10-68 95-152 (497)
64 PRK13317 pantothenate kinase; 92.1 0.2 4.3E-06 45.5 4.3 27 10-37 2-28 (277)
65 PRK11031 guanosine pentaphosph 92.1 0.97 2.1E-05 44.5 9.4 84 4-98 1-88 (496)
66 TIGR03123 one_C_unchar_1 proba 92.0 0.33 7.2E-06 44.9 5.7 30 13-43 1-30 (318)
67 PRK10854 exopolyphosphatase; P 91.9 0.93 2E-05 44.9 9.1 84 5-98 6-93 (513)
68 PRK13320 pantothenate kinase; 91.8 0.92 2E-05 40.4 8.2 25 12-38 4-28 (244)
69 COG0849 ftsA Cell division ATP 91.6 1.8 4E-05 41.6 10.4 55 11-68 7-64 (418)
70 PRK03011 butyrate kinase; Prov 91.4 0.33 7.2E-06 45.7 5.1 31 11-43 3-33 (358)
71 PTZ00107 hexokinase; Provision 90.5 1.3 2.9E-05 43.1 8.5 57 11-68 75-138 (464)
72 TIGR00555 panK_eukar pantothen 90.5 1.3 2.8E-05 40.3 7.8 25 12-37 2-26 (279)
73 PRK13331 pantothenate kinase; 90.4 1.3 2.8E-05 39.6 7.7 24 11-36 8-31 (251)
74 TIGR02529 EutJ ethanolamine ut 90.4 1.3 2.8E-05 39.3 7.7 51 14-68 1-51 (239)
75 TIGR03706 exo_poly_only exopol 90.3 1.3 2.9E-05 40.5 7.9 77 12-98 2-82 (300)
76 PF11104 PilM_2: Type IV pilus 89.9 1.7 3.7E-05 40.5 8.4 53 14-68 1-56 (340)
77 TIGR00671 baf pantothenate kin 88.5 1.4 3.1E-05 39.1 6.6 29 13-43 2-30 (243)
78 PF02685 Glucokinase: Glucokin 87.8 1.4 3.1E-05 40.7 6.3 30 13-42 1-32 (316)
79 PRK13326 pantothenate kinase; 86.9 1.7 3.8E-05 39.1 6.2 30 11-42 7-36 (262)
80 PTZ00340 O-sialoglycoprotein e 86.9 3.6 7.9E-05 38.5 8.4 76 11-97 2-79 (345)
81 PF14450 FtsA: Cell division p 86.4 4.6 0.0001 31.6 7.7 54 12-68 1-57 (120)
82 PF00871 Acetate_kinase: Aceto 85.9 1.3 2.8E-05 42.2 5.0 29 12-40 2-30 (388)
83 COG3894 Uncharacterized metal- 85.1 1.2 2.5E-05 43.5 4.2 33 10-42 164-196 (614)
84 PRK12440 acetate kinase; Revie 85.1 9 0.00019 36.6 10.1 32 7-38 1-32 (397)
85 COG4820 EutJ Ethanolamine util 84.6 2.9 6.3E-05 36.2 6.0 29 9-38 28-56 (277)
86 COG5026 Hexokinase [Carbohydra 84.2 2.6 5.5E-05 40.5 6.0 55 11-68 76-131 (466)
87 PRK09604 UGMP family protein; 84.1 6 0.00013 36.8 8.5 77 11-96 2-80 (332)
88 TIGR01319 glmL_fam conserved h 83.7 3.5 7.6E-05 40.0 6.8 29 15-43 1-29 (463)
89 COG0145 HyuA N-methylhydantoin 83.5 3.8 8.3E-05 41.9 7.4 32 10-42 2-33 (674)
90 COG0837 Glk Glucokinase [Carbo 83.0 2.7 5.8E-05 38.5 5.4 30 5-35 2-31 (320)
91 COG3734 DgoK 2-keto-3-deoxy-ga 82.5 2.1 4.5E-05 38.8 4.5 33 9-42 4-36 (306)
92 COG1521 Pantothenate kinase ty 81.7 4.7 0.0001 36.1 6.5 30 12-43 2-31 (251)
93 PRK09605 bifunctional UGMP fam 81.7 6 0.00013 39.2 8.0 76 11-97 2-78 (535)
94 PLN02666 5-oxoprolinase 81.2 4.2 9.2E-05 44.6 7.1 75 10-98 9-86 (1275)
95 COG1214 Inactive homolog of me 80.6 4.9 0.00011 35.1 6.2 70 11-101 2-71 (220)
96 COG4020 Uncharacterized protei 79.9 7.1 0.00015 34.9 6.7 27 9-36 2-28 (332)
97 COG0248 GppA Exopolyphosphatas 79.9 3.7 8E-05 40.4 5.6 78 10-98 3-85 (492)
98 PRK07058 acetate kinase; Provi 79.4 3.3 7.2E-05 39.4 4.9 32 7-38 1-34 (396)
99 PF03309 Pan_kinase: Type III 79.1 6.6 0.00014 33.8 6.5 23 12-36 1-23 (206)
100 KOG1369|consensus 78.4 12 0.00027 36.5 8.6 52 11-68 87-142 (474)
101 PRK00109 Holliday junction res 77.9 19 0.00042 29.0 8.4 23 11-34 5-27 (138)
102 TIGR00329 gcp_kae1 metallohydr 77.3 9.8 0.00021 34.9 7.4 75 13-96 1-77 (305)
103 TIGR03723 bact_gcp putative gl 76.5 13 0.00028 34.4 7.9 77 12-97 1-79 (314)
104 TIGR03725 bact_YeaZ universal 76.0 12 0.00026 32.1 7.2 63 12-97 1-63 (202)
105 PF03652 UPF0081: Uncharacteri 74.8 7.8 0.00017 31.2 5.3 23 11-34 2-24 (135)
106 PF04312 DUF460: Protein of un 74.3 13 0.00027 30.1 6.2 33 8-42 30-62 (138)
107 PF07318 DUF1464: Protein of u 74.1 3.5 7.7E-05 38.4 3.5 30 14-44 1-30 (343)
108 COG0816 Predicted endonuclease 73.9 26 0.00056 28.5 8.1 22 10-32 2-23 (141)
109 CHL00094 dnaK heat shock prote 72.9 3.8 8.2E-05 41.6 3.7 19 11-29 3-21 (621)
110 PRK00290 dnaK molecular chaper 72.8 3.6 7.8E-05 41.7 3.5 19 11-29 3-21 (627)
111 PRK13411 molecular chaperone D 71.6 4.4 9.5E-05 41.4 3.8 19 11-29 3-21 (653)
112 PRK13410 molecular chaperone D 70.9 4.7 0.0001 41.3 3.9 19 11-29 3-21 (668)
113 TIGR03722 arch_KAE1 universal 70.9 16 0.00035 33.8 7.2 73 13-96 1-74 (322)
114 COG1548 Predicted transcriptio 69.5 11 0.00023 34.0 5.3 18 11-28 4-21 (330)
115 PRK07157 acetate kinase; Provi 68.8 7.9 0.00017 37.0 4.6 27 12-38 5-31 (400)
116 PRK05183 hscA chaperone protei 68.7 5.7 0.00012 40.2 4.0 22 8-29 17-38 (616)
117 TIGR00016 ackA acetate kinase. 68.0 9.2 0.0002 36.6 4.9 28 11-38 5-33 (404)
118 TIGR02350 prok_dnaK chaperone 66.6 5.6 0.00012 40.0 3.4 18 12-29 2-19 (595)
119 PRK14878 UGMP family protein; 65.8 25 0.00055 32.5 7.4 72 13-96 1-73 (323)
120 PF06277 EutA: Ethanolamine ut 65.8 14 0.00031 36.0 5.7 18 11-28 4-21 (473)
121 PTZ00186 heat shock 70 kDa pre 65.3 7.6 0.00016 39.7 4.1 21 9-29 26-46 (657)
122 PF00012 HSP70: Hsp70 protein; 64.9 6.1 0.00013 39.5 3.3 18 12-29 1-18 (602)
123 COG0282 ackA Acetate kinase [E 64.2 19 0.00041 34.2 6.1 27 11-37 2-28 (396)
124 PF01548 DEDD_Tnp_IS110: Trans 63.9 17 0.00037 28.9 5.2 30 12-42 1-30 (144)
125 PTZ00009 heat shock 70 kDa pro 63.6 7.3 0.00016 39.8 3.6 20 10-29 4-23 (653)
126 PRK10719 eutA reactivating fac 63.1 18 0.00038 35.4 5.9 16 11-26 7-22 (475)
127 COG0533 QRI7 Metal-dependent p 62.8 30 0.00065 32.3 7.1 81 11-102 2-84 (342)
128 PRK12397 propionate kinase; Re 61.5 14 0.0003 35.5 4.7 30 9-38 2-31 (404)
129 PF14639 YqgF: Holliday-juncti 61.2 36 0.00078 27.9 6.6 31 9-40 4-38 (150)
130 PF07736 CM_1: Chorismate muta 57.0 17 0.00036 28.6 3.8 37 54-98 13-49 (118)
131 PRK11678 putative chaperone; P 55.9 9.8 0.00021 37.1 2.8 17 12-28 2-18 (450)
132 PRK13322 pantothenate kinase; 55.8 10 0.00022 33.7 2.8 23 12-35 2-24 (246)
133 COG2441 Predicted butyrate kin 55.6 16 0.00034 33.3 3.8 46 13-65 1-46 (374)
134 PLN03184 chloroplast Hsp70; Pr 55.6 13 0.00028 38.2 3.8 19 11-29 40-58 (673)
135 PRK01433 hscA chaperone protei 55.5 13 0.00027 37.7 3.6 19 10-28 19-37 (595)
136 COG4012 Uncharacterized protei 55.5 37 0.00081 30.7 6.1 45 12-67 229-273 (342)
137 PTZ00400 DnaK-type molecular c 55.5 12 0.00026 38.3 3.6 18 11-28 42-59 (663)
138 COG0443 DnaK Molecular chapero 55.5 11 0.00024 38.0 3.2 20 10-29 5-24 (579)
139 PRK12379 propionate/acetate ki 55.4 20 0.00044 34.2 4.8 30 10-39 5-34 (396)
140 PRK13328 pantothenate kinase; 55.1 13 0.00028 33.3 3.3 24 12-36 3-26 (255)
141 PRK00039 ruvC Holliday junctio 53.6 44 0.00095 27.8 6.0 22 11-33 3-24 (164)
142 PF03702 UPF0075: Uncharacteri 53.6 73 0.0016 30.2 8.2 82 10-98 1-97 (364)
143 PF08735 DUF1786: Putative pyr 52.6 49 0.0011 29.7 6.4 45 12-67 169-213 (254)
144 TIGR01991 HscA Fe-S protein as 52.5 12 0.00027 37.7 3.0 18 12-29 1-18 (599)
145 PF05035 DGOK: 2-keto-3-deoxy- 52.3 17 0.00037 33.2 3.6 27 16-43 1-27 (287)
146 PRK11031 guanosine pentaphosph 51.2 62 0.0013 31.9 7.6 32 12-45 134-165 (496)
147 TIGR01796 CM_mono_aroH monofun 49.3 26 0.00056 27.5 3.7 37 54-98 13-49 (117)
148 cd02185 AroH Chorismate mutase 49.2 26 0.00056 27.5 3.7 37 54-98 13-49 (117)
149 TIGR01865 cas_Csn1 CRISPR-asso 48.9 14 0.0003 38.7 2.8 22 10-32 1-22 (805)
150 PF02075 RuvC: Crossover junct 48.5 81 0.0018 25.6 6.8 30 12-42 1-33 (149)
151 TIGR00250 RNAse_H_YqgF RNAse H 46.4 61 0.0013 25.8 5.6 21 13-34 1-21 (130)
152 TIGR00904 mreB cell shape dete 45.6 16 0.00035 33.7 2.5 15 13-27 5-19 (333)
153 TIGR03706 exo_poly_only exopol 45.1 79 0.0017 28.8 6.9 31 13-45 128-158 (300)
154 KOG2708|consensus 44.7 1.1E+02 0.0023 27.3 7.1 74 12-96 4-78 (336)
155 TIGR03123 one_C_unchar_1 proba 43.7 28 0.00061 32.3 3.7 26 10-37 128-153 (318)
156 TIGR03281 methan_mark_12 putat 43.6 16 0.00036 33.6 2.1 23 12-35 1-23 (326)
157 PRK00976 hypothetical protein; 41.7 33 0.00072 31.9 3.8 19 11-29 2-20 (326)
158 PRK00180 acetate kinase A/prop 41.4 41 0.00088 32.3 4.5 27 12-38 3-29 (402)
159 PF02541 Ppx-GppA: Ppx/GppA ph 41.1 41 0.00088 30.3 4.3 33 11-45 113-145 (285)
160 PRK13928 rod shape-determining 40.9 21 0.00045 33.0 2.4 15 13-27 6-20 (336)
161 COG3426 Butyrate kinase [Energ 40.7 54 0.0012 30.0 4.8 19 11-29 4-22 (358)
162 KOG1386|consensus 40.6 97 0.0021 30.5 6.8 61 8-68 7-72 (501)
163 PRK09585 anmK anhydro-N-acetyl 40.4 1.6E+02 0.0035 27.9 8.2 81 11-98 3-100 (365)
164 cd00529 RuvC_resolvase Hollida 38.2 97 0.0021 25.2 5.8 18 12-29 2-19 (154)
165 PRK10719 eutA reactivating fac 36.7 40 0.00088 33.0 3.7 35 7-43 143-177 (475)
166 PF01968 Hydantoinase_A: Hydan 36.6 38 0.00082 30.8 3.4 24 11-36 78-101 (290)
167 KOG2707|consensus 35.8 78 0.0017 29.9 5.2 82 12-103 34-117 (405)
168 PRK13929 rod-share determining 35.8 34 0.00073 31.7 3.0 13 12-24 6-18 (335)
169 PF06723 MreB_Mbl: MreB/Mbl pr 35.7 22 0.00047 33.1 1.7 26 13-40 4-29 (326)
170 PRK13329 pantothenate kinase; 34.7 30 0.00066 30.8 2.4 17 12-28 3-19 (249)
171 COG1647 Esterase/lipase [Gener 33.6 69 0.0015 28.3 4.2 37 51-98 60-96 (243)
172 PF04848 Pox_A22: Poxvirus A22 32.3 1E+02 0.0022 25.1 4.8 25 11-36 2-26 (143)
173 COG0248 GppA Exopolyphosphatas 31.4 1.1E+02 0.0024 30.3 5.8 33 10-44 129-161 (492)
174 PRK10854 exopolyphosphatase; P 31.3 1.9E+02 0.0041 28.6 7.5 32 12-45 139-170 (513)
175 PRK13325 bifunctional biotin-- 28.4 74 0.0016 32.2 4.1 24 11-36 339-362 (592)
176 PRK13930 rod shape-determining 28.1 40 0.00087 30.9 2.1 16 13-28 11-26 (335)
177 PRK08557 hypothetical protein; 27.5 77 0.0017 30.6 3.9 56 112-173 316-376 (417)
178 PF12864 DUF3822: Protein of u 26.9 3.9E+02 0.0084 23.5 8.2 53 8-68 16-68 (253)
179 KOG0100|consensus 26.9 1.1E+02 0.0023 29.6 4.6 25 9-35 35-59 (663)
180 PF06277 EutA: Ethanolamine ut 26.7 96 0.0021 30.4 4.4 31 6-38 139-169 (473)
181 PF08841 DDR: Diol dehydratase 26.1 1.1E+02 0.0023 28.2 4.2 29 8-38 133-161 (332)
182 TIGR03192 benz_CoA_bzdQ benzoy 25.7 78 0.0017 29.0 3.4 23 13-36 128-150 (293)
183 COG0145 HyuA N-methylhydantoin 24.9 82 0.0018 32.4 3.8 17 12-28 280-296 (674)
184 PRK13927 rod shape-determining 24.4 51 0.0011 30.3 2.1 15 12-26 7-21 (334)
185 COG2183 Tex Transcriptional ac 24.1 2.2E+02 0.0048 29.8 6.5 29 9-38 329-358 (780)
186 TIGR02261 benz_CoA_red_D benzo 23.8 94 0.002 28.0 3.5 23 13-36 100-122 (262)
187 COG3513 Predicted CRISPR-assoc 23.0 72 0.0016 33.4 2.9 22 7-28 1-22 (1088)
188 COG2012 RPB5 DNA-directed RNA 20.7 93 0.002 22.6 2.3 20 222-241 27-46 (80)
No 1
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=100.00 E-value=1.6e-57 Score=422.67 Aligned_cols=273 Identities=50% Similarity=0.881 Sum_probs=257.9
Q ss_pred CCEEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCC
Q psy9351 9 GPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTD 88 (297)
Q Consensus 9 ~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~ 88 (297)
++|+++||.||||+|+++||. +|++++..+.+++.+||++||+||||.++|..+..+++ + + +.++++++.+
T Consensus 4 ~~yIlAiDqGTTssRaivfd~-~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~----~-a---~~~~~i~~~~ 74 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDE-DGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLK----E-A---LAKAGIKPGE 74 (499)
T ss_pred ccEEEEEecCCcceeEEEECC-CCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHH----H-H---HHHcCCCccc
Confidence 579999999999999999996 99999999999999999999999999999999999999 6 6 5668999999
Q ss_pred eeEEEEcCccceEEEEeCCCCccccccccccccCCHHHHHHHHHhCCCChhhhHHhhhCCCCCCcchHHHHHHHHHhChh
Q psy9351 89 IVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPK 168 (297)
Q Consensus 89 I~~Igis~~~~~~v~vd~~~g~~~~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~ 168 (297)
|.+|||+.|+++.|+||+++|+|++|+|.|+|.|+.+.|++|++. +. .+.+.++||.++.|+|+..|+.|+.+|.|.
T Consensus 75 iaaIGITNQRETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~-g~--~~~i~~kTGL~~dpYFSatKi~WiLdnv~g 151 (499)
T COG0554 75 IAAIGITNQRETTVVWDKETGKPIYNAIVWQDRRTADICEELKAD-GY--EERIREKTGLVLDPYFSATKIKWILDNVPG 151 (499)
T ss_pred eEEEEeeccceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhc-ch--hhhhhhhcCCccCCCccchhhhHHHhhChh
Confidence 999999999999999999999999999999999999999999987 22 468999999999999999999999999999
Q ss_pred hHhhhhcCceeeeChhHHHHHHHcCCCCCCceEeeccccccccCccCCCCCCcHHHhcccCCCCCCCCCcccCCcceeec
Q psy9351 169 VKEAIDQNRCCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHF 248 (297)
Q Consensus 169 ~~~~~~~~~~~~~~~~dyi~~~LtG~~~~~~~~~d~s~a~~tgl~d~~~~~w~~~~l~~~gi~~~~LP~l~~~g~~~G~i 248 (297)
..++.+.+...|.++..||.|+|||. +.+++|+||||+|+|||+.+.+||+++|+.||||+++||++.++.++.|.+
T Consensus 152 ~r~~ae~Gel~fGTiDtWLiw~LTgg---~~h~TD~sNASRT~L~ni~~l~WD~elL~il~Ip~~~LPev~~ss~~~G~t 228 (499)
T COG0554 152 ARERAEKGELLFGTIDTWLIWKLTGG---KVHVTDYSNASRTMLFNIHSLEWDDELLELLGIPRSMLPEVRPSSEIYGVT 228 (499)
T ss_pred hhhHhhcCCeEEecchhhheeeccCC---ceeccccchhHHHhcccccccCCCHHHHHHhCCChHhCccccccccccccc
Confidence 99999999999999999999999995 449999999999999999999999999999999999999999999999998
Q ss_pred ccC-CCCCCcEEEecchHHHHHHhcCCCCCCcEEEEecccccccccccC
Q psy9351 249 VSG-PLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGN 296 (297)
Q Consensus 249 ~~G-l~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~v~~~t~~ 296 (297)
..+ +...+||..-.||+|||+||.||++||++..+.||.+++.++||.
T Consensus 229 ~~~~~g~~vPI~g~~GDQQAALfGq~c~~pG~~K~TYGTG~F~l~ntG~ 277 (499)
T COG0554 229 GIGFLGAEVPITGVAGDQQAALFGQGCFEPGMAKNTYGTGCFLLMNTGE 277 (499)
T ss_pred cccccCCceeeccccchhHHHHhhcccCCcCccccccccceeeeeccCC
Confidence 654 446799999999999999999999999999999999999999985
No 2
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=100.00 E-value=7.2e-56 Score=432.31 Aligned_cols=269 Identities=52% Similarity=0.942 Sum_probs=244.2
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCC--C
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPT--D 88 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~--~ 88 (297)
++||||+|||++|+++||. +|++++..+.+++..++.+|+.|||+++||++++++++ + + +++.+..+. +
T Consensus 3 ~~lgiDiGTts~Ka~l~d~-~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~----~-~---~~~~~~~~~~~~ 73 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDE-KGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMN----E-A---IKKLREKGPSFK 73 (504)
T ss_pred EEEEEecCCCceEEEEECC-CCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHH----H-H---HHHcCCCCccCc
Confidence 8999999999999999997 99999999999988888999999999999999999999 7 6 344444454 7
Q ss_pred eeEEEEcCccceEEEEeCCCCccccccccccccCCHHHHHHHHHhCCCChhhhHHhhhCCCCCCcchHHHHHHHHHhChh
Q psy9351 89 IVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPK 168 (297)
Q Consensus 89 I~~Igis~~~~~~v~vd~~~g~~~~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~ 168 (297)
|.+||+|+|+++++++|+++|+|++|+|.|+|.|+.++++++.+.++. .+.++++||.++.+.++++||+|+++|+|+
T Consensus 74 I~aIgis~q~~~~v~~D~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~--~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~ 151 (504)
T PTZ00294 74 IKAIGITNQRETVVAWDKVTGKPLYNAIVWLDTRTYDIVNELTKKYGG--SNFFQKITGLPISTYFSAFKIRWMLENVPA 151 (504)
T ss_pred eEEEEeecCcceEEEEECCCCCCcccceeecchhhHHHHHHHHhhcCc--chHHHHhhCCcCCccchHHHHHHHHhcCHH
Confidence 999999999999999987469999999999999999999999877642 145779999999999999999999999999
Q ss_pred hHhhhhcCceeeeChhHHHHHHHcC--CCCCCceEeeccccccccCccCCCCCCcHHHhcccCCCCCCCCCcccCCccee
Q psy9351 169 VKEAIDQNRCCIGTVDTWIIWNLTG--GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYG 246 (297)
Q Consensus 169 ~~~~~~~~~~~~~~~~dyi~~~LtG--~~~~~~~~~d~s~a~~tgl~d~~~~~w~~~~l~~~gi~~~~LP~l~~~g~~~G 246 (297)
+|++++.+..++++++|||.|+||| + .++|+|+|+++++||+++++|++++++.+||++++||+|+++++++|
T Consensus 152 ~~~~~~~~~~~~~~~~dyl~~~LTG~~~-----~~~d~s~As~tgl~D~~~~~W~~~ll~~~gi~~~~LP~v~~~~~~~G 226 (504)
T PTZ00294 152 VKDAVKEGTLLFGTIDTWLIWNLTGGKS-----HVTDVTNASRTFLMNIKTLKWDEELLNKFGIPKETLPEIKSSSENFG 226 (504)
T ss_pred HHHhhhcCCeEEEcHHHHHHHHhcCCce-----EEEEhhhhHHhhccCcccCccCHHHHHHhCCCHHHCCCccCCccccC
Confidence 9997642236699999999999999 7 99999999999999999999999999999999999999999999999
Q ss_pred ec---ccCCCCCCcEEEecchHHHHHHhcCCCCCCcEEEEeccccccccccc
Q psy9351 247 HF---VSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295 (297)
Q Consensus 247 ~i---~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~v~~~t~ 295 (297)
+| ..|+++|+||++|++|++|+++|+|++++|++.+++|||+++.++++
T Consensus 227 ~l~~~~~~~~~g~pV~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~ 278 (504)
T PTZ00294 227 TISGEAVPLLEGVPITGCIGDQQAALIGHGCFEKGDAKNTYGTGCFLLMNTG 278 (504)
T ss_pred ccchhhcCCCCCCcEEEEecHHHHHHHhCcCCCCCceEEeeccceEEEEeeC
Confidence 99 36788999999999999999999999999999999999988665543
No 3
>PRK00047 glpK glycerol kinase; Provisional
Probab=100.00 E-value=7.9e-56 Score=431.51 Aligned_cols=273 Identities=47% Similarity=0.826 Sum_probs=247.7
Q ss_pred ccCCEEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCC
Q psy9351 7 QYGPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEP 86 (297)
Q Consensus 7 ~~~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~ 86 (297)
+|++|+||||+|||++|+++||. +|++++..+.+++..++.+|+.|||+++||+.++++++ + + +++++..+
T Consensus 2 ~m~~~~lgiD~GTts~Ka~l~d~-~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~----~-~---~~~~~~~~ 72 (498)
T PRK00047 2 MMKKYILALDQGTTSSRAIIFDH-DGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIA----E-A---LAKAGISP 72 (498)
T ss_pred CccCEEEEEecCCCceEEEEECC-CCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHH----H-H---HHHcCCCh
Confidence 35578999999999999999997 99999999999988888999999999999999999999 7 6 45567777
Q ss_pred CCeeEEEEcCccceEEEEeCCCCccccccccccccCCHHHHHHHHHhCCCChhhhHHhhhCCCCCCcchHHHHHHHHHhC
Q psy9351 87 TDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNV 166 (297)
Q Consensus 87 ~~I~~Igis~~~~~~v~vd~~~g~~~~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~ 166 (297)
++|.+||+++|+++++++|+++|+|++|+|+|+|.|+.++++++++... .+++++++|+++.+.++++||+|+++|+
T Consensus 73 ~~I~~Igis~~~~~~v~~D~~~G~pl~~~i~w~D~Ra~~~~~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~Wl~~~~ 149 (498)
T PRK00047 73 DQIAAIGITNQRETTVVWDKETGRPIYNAIVWQDRRTADICEELKRDGY---EDYIREKTGLVIDPYFSGTKIKWILDNV 149 (498)
T ss_pred hHeeEEEEecCcceEEEEECCCCcCCcccceecccchHHHHHHHHhccc---hhhHHHhhCCCCCccchHHHHHHHHHcC
Confidence 8899999999999999999635999999999999999999999986522 2458999999999999999999999999
Q ss_pred hhhHhhhhcCceeeeChhHHHHHHHcCCCCCCceEeeccccccccCccCCCCCCcHHHhcccCCCCCCCCCcccCCccee
Q psy9351 167 PKVKEAIDQNRCCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYG 246 (297)
Q Consensus 167 p~~~~~~~~~~~~~~~~~dyi~~~LtG~~~~~~~~~d~s~a~~tgl~d~~~~~w~~~~l~~~gi~~~~LP~l~~~g~~~G 246 (297)
|++++++.....+|++++|||.|+|||. +..++|+|+|+++++||+++++|++++++.+||++++||+|+++++++|
T Consensus 150 p~~~~~~~~~~~~~~~~~dyl~~~LTG~---~~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~i~~~g~~~G 226 (498)
T PRK00047 150 EGARERAEKGELLFGTIDTWLVWKLTGG---KVHVTDYTNASRTMLFNIHTLDWDDELLELLDIPRSMLPEVRPSSEVYG 226 (498)
T ss_pred HhHHHHHhcCCeEEeChHHhHhhhhcCC---CeeEeechHHhhhhccccccCccCHHHHHhcCCCHHHCCCccCCccccc
Confidence 9998888655567999999999999974 1168999999999999999999999999999999999999999999999
Q ss_pred ecc--cCCCCCCcEEEecchHHHHHHhcCCCCCCcEEEEecccccccccc
Q psy9351 247 HFV--SGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNT 294 (297)
Q Consensus 247 ~i~--~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~v~~~t 294 (297)
+|. .++.+||||++|++|++|+++|+|++++|++++++|||+++.+++
T Consensus 227 ~v~~~~~l~~g~pV~~g~~D~~aa~~G~G~~~~g~~~~~~GTs~~~~~~~ 276 (498)
T PRK00047 227 KTNPYGFFGGEVPIAGIAGDQQAALFGQLCFEPGMAKNTYGTGCFMLMNT 276 (498)
T ss_pred cccccccCCCCceEEEEccHHHHHHHhCcCCCCCceEEeeccceEEEEec
Confidence 983 577789999999999999999999999999999999999877665
No 4
>PLN02295 glycerol kinase
Probab=100.00 E-value=7.3e-56 Score=432.93 Aligned_cols=274 Identities=53% Similarity=0.963 Sum_probs=243.8
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCC--
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTD-- 88 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~-- 88 (297)
|+||||+|||++|+++||. +|++++..+.+++..+|++|++||||++||++++++++ + + +++++..+++
T Consensus 1 ~vlgID~GTts~Ka~l~d~-~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~----~-~---~~~~~~~~~~i~ 71 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDR-DARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIA----K-A---LEKAAAKGHNVD 71 (512)
T ss_pred CEEEEecCCCceEEEEECC-CCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHH----H-H---HHHcCCCccccc
Confidence 5899999999999999997 99999999999998899999999999999999999999 7 6 4555666666
Q ss_pred --eeEEEEcCccceEEEEeCCCCccccccccccccCCHHHHHHHHHhCCCChhhhHHhhhCCCCCCcchHHHHHHHHHhC
Q psy9351 89 --IVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNV 166 (297)
Q Consensus 89 --I~~Igis~~~~~~v~vd~~~g~~~~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~ 166 (297)
|.+||+++|++|+++||+++|+|++|+|.|+|.|+.++++++++.+.. ..+.+++.||.++++.++++||+|+++|+
T Consensus 72 ~~i~aIg~s~q~~~~v~~dd~~G~pl~~~i~w~D~Ra~~~~~~l~~~~~~-~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~ 150 (512)
T PLN02295 72 SGLKAIGITNQRETTVAWSKSTGRPLYNAIVWMDSRTSSICRRLEKELSG-GRKHFVETCGLPISTYFSATKLLWLLENV 150 (512)
T ss_pred cceEEEEEecCcceEEEEECCCCCCcccceeccccchHHHHHHHHhhccc-hhHHHHHhhCCcCCcccHHHHHHHHHhcC
Confidence 799999999999999963379999999999999999999999876531 01357799999999999999999999999
Q ss_pred hhhHhhhhcCceeeeChhHHHHHHHcCCCCCCceEeeccccccccCccCCCCCCcHHHhcccCCCCCCCCCcccCCccee
Q psy9351 167 PKVKEAIDQNRCCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYG 246 (297)
Q Consensus 167 p~~~~~~~~~~~~~~~~~dyi~~~LtG~~~~~~~~~d~s~a~~tgl~d~~~~~w~~~~l~~~gi~~~~LP~l~~~g~~~G 246 (297)
|++|+++..+..+|++++|||.|+|||+....++++|+|+|+++++||+++++|++++++.+||++++||+|+++++++|
T Consensus 151 P~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~td~s~As~t~l~D~~~~~W~~ell~~~gi~~~~lP~l~~~~~~~G 230 (512)
T PLN02295 151 DAVKEAVKSGDALFGTIDSWLIWNLTGGASGGVHVTDVTNASRTMLMNLKTLDWDKPTLEALGIPAEILPKIVSNSEVIG 230 (512)
T ss_pred HHHHHhhhcCceEEEcHHHHHHHHhhCCCCCCeEEeeHHHhHHhhccCcccCcCCHHHHHHcCCCHHHCCCcccCcccee
Confidence 99998764455799999999999999931000289999999999999999999999999999999999999999999999
Q ss_pred ecccCCCC-CCcEEEecchHHHHHHhcCCCCCCcEEEEeccccccccccc
Q psy9351 247 HFVSGPLK-GVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295 (297)
Q Consensus 247 ~i~~Gl~~-g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~v~~~t~ 295 (297)
+|+..+.. |+||++|++|++|+++|+|+ ++|++++++|||+++.++++
T Consensus 231 ~v~~~~a~~g~pV~~g~~D~~aa~~G~G~-~~g~~~~~~GTs~~i~~~~~ 279 (512)
T PLN02295 231 TIAKGWPLAGVPIAGCLGDQHAAMLGQRC-RPGEAKSTYGTGCFILLNTG 279 (512)
T ss_pred ccccccccCCCcEEEEechHHHHHhhCcC-CCCCeEEEEcccceeeeecC
Confidence 99777765 99999999999999999999 99999999999988666543
No 5
>PRK10331 L-fuculokinase; Provisional
Probab=100.00 E-value=5.7e-56 Score=429.66 Aligned_cols=261 Identities=21% Similarity=0.325 Sum_probs=240.5
Q ss_pred CEEEEEecCCCcceEEEEeCCCCeEEEEEEeeec--cccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCC
Q psy9351 10 PLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLG--QTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPT 87 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~--~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~ 87 (297)
+|+||||+|||++|+++||. +|++++..+.+++ ...+.+|+.||||++||+.++++++ + +. ++. ...
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~-~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~----~-~~---~~~--~~~ 70 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDR-QGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCR----Q-IN---SEL--TEC 70 (470)
T ss_pred ceEEEEecCCCceEEEEEcC-CCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHH----H-HH---HhC--Ccc
Confidence 48999999999999999997 9999999999876 3457889999999999999999999 7 53 332 346
Q ss_pred CeeEEEEcCccceEEEEeCCCCccccccccccccCCHHHHHHHHHhCCCChhhhHHhhhCCCCCCcchHHHHHHHHHhCh
Q psy9351 88 DIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVP 167 (297)
Q Consensus 88 ~I~~Igis~~~~~~v~vd~~~g~~~~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p 167 (297)
+|.+||+++|+++++++|+ +|+|++|+|+|+|.|+.++++++++..+. +.+++.+|+++.+.++++||+|+++|+|
T Consensus 71 ~I~~I~is~~~~~~v~~D~-~G~pl~p~i~w~D~Ra~~~~~~l~~~~~~---~~~~~~tG~~~~~~~~~~Kl~Wl~~~~P 146 (470)
T PRK10331 71 HIRGITVTTFGVDGALVDK-QGNLLYPIISWKCPRTAAVMENIERYISA---QQLQQISGVGAFSFNTLYKLVWLKENHP 146 (470)
T ss_pred ceEEEEEeccccceEEECC-CcCCccCceeecCCCcHHHHHHHHHhcCH---HHHHhhhCCCccccchHHHHHHHHHhCH
Confidence 7999999999999999999 79999999999999999999999887653 5789999999999999999999999999
Q ss_pred hhHhhhhcCceeeeChhHHHHHHHcCCCCCCceEeeccccccccCccCCCCCCcHHHhcccCCCCCCCCCcccCCcceee
Q psy9351 168 KVKEAIDQNRCCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGH 247 (297)
Q Consensus 168 ~~~~~~~~~~~~~~~~~dyi~~~LtG~~~~~~~~~d~s~a~~tgl~d~~~~~w~~~~l~~~gi~~~~LP~l~~~g~~~G~ 247 (297)
++++++ .+|++++|||.|||||+ .++|+|+|+.+++||+++++|++++++.+||++++||+|+++++++|+
T Consensus 147 ~~~~~~----~~~l~~~dyl~~~LTG~-----~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~i~~~g~~~G~ 217 (470)
T PRK10331 147 QLLEQA----HAWLFISSLINHRLTGE-----FTTDITMAGTSQMLDIQQRDFSPEILQATGLSRRLFPRLVEAGEQIGT 217 (470)
T ss_pred HHHHHh----hhhcCHHHHHHHhhcCc-----cccchhhccceeeeecccCCCCHHHHHHcCCCHHHCCCcccccccccc
Confidence 999988 78999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred c------ccCCCCCCcEEEecchHHHHHHhcCCCCCCcEEEEeccccccccccc
Q psy9351 248 F------VSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295 (297)
Q Consensus 248 i------~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~v~~~t~ 295 (297)
| .+||++|+||++|++|++|+++|+|+ .+|++++++|||.++.+++.
T Consensus 218 v~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~g~-~~g~~~~~~GT~~~~~~~~~ 270 (470)
T PRK10331 218 LQPSAAALLGLPVGIPVISAGHDTQFALFGSGA-GQNQPVLSSGTWEILMVRSA 270 (470)
T ss_pred cCHHHHHHhCCCCCCeEEEccccHHHHHhCCCC-CCCCEEEecchhhhheeecC
Confidence 9 47999999999999999999999997 78999999999998776553
No 6
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=100.00 E-value=1.4e-55 Score=430.45 Aligned_cols=262 Identities=29% Similarity=0.365 Sum_probs=244.4
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCee
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIV 90 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~ 90 (297)
|+||||+|||++|++++|. +|++++..+.+++...+.+|+.|+|+++||+.+.++++ + + +++.+.. ++|.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~-~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~----~-~---~~~~~~~-~~I~ 70 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE-NGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIR----E-V---SINLEDE-DEIL 70 (505)
T ss_pred CEEEEeccccceEEEEEcC-CCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHH----H-H---HHhCCCc-CceE
Confidence 5799999999999999997 99999999998887778889999999999999999999 7 5 3444434 6799
Q ss_pred EEEEcCccceEEEEeCCCCccccccccccccCCHHHHHHHHHhCCCChhhhHHhhhCCCCCCcchHHHHHHHHHhChhhH
Q psy9351 91 AVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVK 170 (297)
Q Consensus 91 ~Igis~~~~~~v~vd~~~g~~~~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~ 170 (297)
+|||++|++++++||+ +|+|++|+++|+|.|+.++++++++.++. +++++++|.++.+.++++||+|+++|+|+++
T Consensus 71 ~Igis~~~~~~v~~D~-~g~pl~~~i~w~D~R~~~~~~~l~~~~~~---~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~ 146 (505)
T TIGR01314 71 FVSFSTQMHSLIAFDE-NWQPLTRLITWADNRAVKYAEQIKESKNG---FDIYRRTGTPIHPMAPLSKIIWLEAEHPDIY 146 (505)
T ss_pred EEEEecccceeEEECC-CcCCcccceeccccchHHHHHHHHhhcCH---HHHHHHHCCCCCccchHHHHHHHHHhChhHH
Confidence 9999999999999999 79999999999999999999999877653 5789999999999999999999999999999
Q ss_pred hhhhcCceeeeChhHHHHHHHcCCCCCCceEeeccccccccCccCCCCCCcHHHhcccCCCCCCCCCcccCCcceeec--
Q psy9351 171 EAIDQNRCCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHF-- 248 (297)
Q Consensus 171 ~~~~~~~~~~~~~~dyi~~~LtG~~~~~~~~~d~s~a~~tgl~d~~~~~w~~~~l~~~gi~~~~LP~l~~~g~~~G~i-- 248 (297)
+++ .+|++++|||.|+|||+ .++|+|+|+++++||+++++|++++++.+||++++||+|+++++++|+|
T Consensus 147 ~~~----~~~l~~~dyl~~~LTG~-----~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~l~~~g~~iG~l~~ 217 (505)
T TIGR01314 147 QKA----AKYLEIKGYIFQRLFGT-----YKIDYSTASATGMFNLFELDWDKEALELTGIKESQLPKLVPTTEIEENLPH 217 (505)
T ss_pred Hhh----cEEECHHHHHHHHHcCC-----ceeEhhhhhhhcceeCCCCCCCHHHHHhcCCCHHHCCCCcCcccccCCcCH
Confidence 988 79999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred ----ccCCCCCCcEEEecchHHHHHHhcCCCCCCcEEEEeccccccccccc
Q psy9351 249 ----VSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295 (297)
Q Consensus 249 ----~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~v~~~t~ 295 (297)
.+||++|+||++|++|++|+++|+|+.+||++++++|||.++.+++.
T Consensus 218 ~~a~~~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~ 268 (505)
T TIGR01314 218 EYAKKMGIQSSTPFVIGASDGVLSNLGVNAIKKGEAAVTIGTSGAIRTVID 268 (505)
T ss_pred HHHHHhCCCCCCeEEEeccHHHHHHhcCCCCCCCcEEEEechhheeeeccC
Confidence 57999999999999999999999999999999999999998887754
No 7
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-55 Score=429.99 Aligned_cols=267 Identities=31% Similarity=0.511 Sum_probs=250.5
Q ss_pred ccCCEEEEEecCCCcceEEEEeCCC-CeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCC
Q psy9351 7 QYGPLVGAIDEGTSSCRFIVFSALT-GKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIE 85 (297)
Q Consensus 7 ~~~~~~lgIDiGtt~ik~~l~d~~~-g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~ 85 (297)
+|++++||||+|||++|+++||. + +++++..+.+++..++.+|+.|||+++||+.+.++++ + + ++++.++
T Consensus 1 ~~~~~~lgIDiGTt~~Kavl~d~-~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~----~-l---~~~~~~~ 71 (502)
T COG1070 1 MMMKYVLGIDIGTTSVKAVLFDE-DGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALR----Q-L---LEESKID 71 (502)
T ss_pred CCccEEEEEEcCCCcEEEEEEeC-CCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHH----H-H---HHhcccC
Confidence 46779999999999999999997 7 8999999999998889999999999999999999999 7 6 4555677
Q ss_pred CCCeeEEEEcCccceEEEEeCCCCccccccccccccCCHHHHHHHHHhCCCChhhhHHhhhCCCCCCcchHHHHHHHHHh
Q psy9351 86 PTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNN 165 (297)
Q Consensus 86 ~~~I~~Igis~~~~~~v~vd~~~g~~~~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~ 165 (297)
+.+|.+|++++|+|+++++|+ +|+|++|+|+|+|.|+.++++++.+.++. +..+..+|.++.+.++++||+|+++|
T Consensus 72 ~~~I~aI~is~~~~g~vllD~-~g~~L~~~i~w~D~R~~~~~~~l~~~~~~---~~~~~~t~~~~~~~~t~~kL~Wl~~~ 147 (502)
T COG1070 72 PDAIAAIGISGQGHGLVLLDA-NGEPLRPAILWNDTRAAEEVEELEERLGG---EALYARTGLQAMPGFTAPKLLWLKEN 147 (502)
T ss_pred hhhceEEEEeccccceEEECC-CCCCccccceecchhhHHHHHHHHhhccc---hhhhhhcCCCcCccccHHHHHHHHhc
Confidence 899999999999999999999 79999999999999999999999988764 56778899999999999999999999
Q ss_pred ChhhHhhhhcCceeeeChhHHHHHHHcCCCCCCceEeeccccccccCccCCCCCCcHHHhcccCCCC-CCCCCcccCCcc
Q psy9351 166 VPKVKEAIDQNRCCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPM-DILPTICSSSEI 244 (297)
Q Consensus 166 ~p~~~~~~~~~~~~~~~~~dyi~~~LtG~~~~~~~~~d~s~a~~tgl~d~~~~~w~~~~l~~~gi~~-~~LP~l~~~g~~ 244 (297)
+||+|+|+ .+|++++|||.|+|||+ +++|+|+|++|++||+++++|+.++++.+|+++ ++||++++++++
T Consensus 148 ~P~~~~k~----~~il~~~dyl~~rLTG~-----~~~e~s~as~t~l~d~~~~~w~~~~l~~~gl~~~~~lp~vv~~g~~ 218 (502)
T COG1070 148 EPDLFAKA----AKILLIKDYLRYRLTGE-----FATEISDASGTGLLDIRTRKWDWELLAALGLPERDLLPPVVEPGEV 218 (502)
T ss_pred CcHHHHhh----hheechHHHHHHHHhCC-----cccccccccccccccccccccCHHHHHHcCCChHHhCCCccCccce
Confidence 99999998 79999999999999999 999999999999999999999999999999995 999999999999
Q ss_pred eeec------ccCCCCCCcEEEecchHHHHHHhcCCCCCCcEEEEeccccccccccc
Q psy9351 245 YGHF------VSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295 (297)
Q Consensus 245 ~G~i------~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~v~~~t~ 295 (297)
+|+| ++||++++||++|++|++++++|+|+.++|++.+++||+.++...+.
T Consensus 219 ~G~l~~e~A~~~Gl~~~~pV~~G~~D~~~a~lg~g~~~~g~~~~~~gts~~~~~~~~ 275 (502)
T COG1070 219 LGTLTPEAAEELGLPAGTPVVVGGGDNAAAALGAGAVDPGDVSSSTGTSGVVRAATD 275 (502)
T ss_pred eccccHHHHHHhCCCCCCeEEECCchHHHHhccCCCcCCCcEEEEeccccEEeeecc
Confidence 9999 57999999999999999999999999999999999999988776553
No 8
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=100.00 E-value=1.5e-55 Score=392.51 Aligned_cols=239 Identities=36% Similarity=0.572 Sum_probs=219.3
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCee
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIV 90 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~ 90 (297)
|+||||+|||++|++++|. +|++++..+.+++...+.+|+.++|+++||+.++++++ + + +++.++.+.+|.
T Consensus 1 y~lgiDiGTts~K~~l~d~-~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~----~-~---~~~~~~~~~~I~ 71 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDE-DGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALK----E-L---LSQAGIDPEQIK 71 (245)
T ss_dssp EEEEEEECSSEEEEEEEET-TSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHH----H-H---HHHCTSCGGGEE
T ss_pred CEEEEEEcccceEEEEEeC-CCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHH----H-H---HhhcCcccceeE
Confidence 6899999999999999996 99999999999998888899999999999999999999 7 6 455677889999
Q ss_pred EEEEcCccceEEEEeCCCCccccccccccccCCHHHHHHHHHhCCCChhhhHHhhhCCCCCCcchHHHHHHHHHhChhhH
Q psy9351 91 AVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVK 170 (297)
Q Consensus 91 ~Igis~~~~~~v~vd~~~g~~~~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~ 170 (297)
+|++++++++++++|+ +|+|+.|+++|+|.|+.++++++++... .+++++.+|.++++.++++||+|+++|+|+++
T Consensus 72 aI~is~~~~~~v~~D~-~~~pl~~~i~w~D~R~~~~~~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~ 147 (245)
T PF00370_consen 72 AIGISGQGHGLVLLDK-DGKPLRPAILWMDTRAAEEAEELNEEGS---PEEIYEKTGLPLSPGYPLAKLLWLKENEPEIF 147 (245)
T ss_dssp EEEEEE-SSEEEEEET-TSSBSSCEE-TT-CTTHHHHHHHHHHTH---HHHHHHHHSS-SSTTSHHHHHHHHHHHSHHHH
T ss_pred EEEeccccCCcceecc-ccccccccccccccchhhHHHHHHhhcC---cceeeeeccccccccchHHHHHHHHHhCchhh
Confidence 9999999999999999 7999999999999999999999988653 47899999999999999999999999999999
Q ss_pred hhhhcCceeeeChhHHHHHHHcCCCCCCceEeeccccccccCccCCCCCCcHHHhcccCCCCCCCCCcccCCcceeec--
Q psy9351 171 EAIDQNRCCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHF-- 248 (297)
Q Consensus 171 ~~~~~~~~~~~~~~dyi~~~LtG~~~~~~~~~d~s~a~~tgl~d~~~~~w~~~~l~~~gi~~~~LP~l~~~g~~~G~i-- 248 (297)
+++ .+|++++|||.|+|||+ .++|+|+|+++++||+++++|++++++++||++++||+|+++|+++|++
T Consensus 148 ~~~----~~~~~~~dyl~~~LtG~-----~~~d~s~as~tgl~d~~~~~w~~~~l~~~gi~~~~lP~i~~~g~~~G~~~~ 218 (245)
T PF00370_consen 148 EKA----AKFLTLSDYLAYKLTGR-----AATDYSNASRTGLYDIRTGQWDEELLEALGIPEELLPEIVPPGEIIGTLTP 218 (245)
T ss_dssp HHH----HEEEEHHHHHHHHHHSC------EEEHHHHCTSSSEETTTTEE-HHHHHHTTSGGGGSCEEE-TTSEEEEEEH
T ss_pred hhh----hhcccHHHHHHhhcccc-----ccccccchhccccccccccccCHHHHHhhCCChhhCCcEecCCCeeEEECH
Confidence 998 69999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred ----ccCCCCCCcEEEecchHHHHHHh
Q psy9351 249 ----VSGPLKGVPISGCLGDQHAALLG 271 (297)
Q Consensus 249 ----~~Gl~~g~pV~~g~~D~~aa~~g 271 (297)
++||++|+||++|++|++|+++|
T Consensus 219 ~~a~~~Gl~~~~pV~~g~~D~~aa~lG 245 (245)
T PF00370_consen 219 EAAKELGLPEGTPVIAGGGDQAAAALG 245 (245)
T ss_dssp HHHHHHTSTTTEEEEEEEEHHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEchHHHHhhcC
Confidence 57999999999999999999997
No 9
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=100.00 E-value=3.2e-55 Score=423.92 Aligned_cols=259 Identities=22% Similarity=0.359 Sum_probs=239.3
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEEEEeeec--cccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCC
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLG--QTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTD 88 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~--~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~ 88 (297)
++||||+|||++|+++||. +|++++..+.+++ ...+.+|+.||||++||+.++++++ + + +++ ..+++
T Consensus 2 ~ilgiD~GTss~K~~l~d~-~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~----~-l---~~~--~~~~~ 70 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR-QGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQ----Q-I---NSE--LTEKH 70 (465)
T ss_pred eEEEEecCCCcEEEEEEcC-CCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHH----H-H---Hhh--cChhc
Confidence 6899999999999999997 9999999998865 4467899999999999999999999 7 5 222 34677
Q ss_pred eeEEEEcCccceEEEEeCCCCccccccccccccCCHHHHHHHHHhCCCChhhhHHhhhCCCCCCcchHHHHHHHHHhChh
Q psy9351 89 IVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPK 168 (297)
Q Consensus 89 I~~Igis~~~~~~v~vd~~~g~~~~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~ 168 (297)
|.+||+++|+++++++|+ +|+|++|+|.|+|.|+.++++++.+.++. +.+++.||.++.+.++++||+|+++|+|+
T Consensus 71 I~aI~~s~~~~~~v~~D~-~G~~l~p~i~w~D~R~~~~~~~l~~~~~~---~~~~~~tG~~~~~~~~~~kl~wl~~~~pe 146 (465)
T TIGR02628 71 IRGIAVTTFGVDGAPFDK-QGNQLYPIISWKCPRTAPVMDNIERLLDA---QRLYAINGIGAYSFNTLYKLVWLKEHHPQ 146 (465)
T ss_pred eEEEEEeccccceEEECC-CCCCccccccccCcccHHHHHHHHHhhCH---HHHHHHhCCCccccchHHHHHHHHHhChH
Confidence 999999999999999999 79999999999999999999999887653 57899999999899999999999999999
Q ss_pred hHhhhhcCceeeeChhHHHHHHHcCCCCCCceEeeccccccccCccCCCCCCcHHHhcccCCCCCCCCCcccCCcceeec
Q psy9351 169 VKEAIDQNRCCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHF 248 (297)
Q Consensus 169 ~~~~~~~~~~~~~~~~dyi~~~LtG~~~~~~~~~d~s~a~~tgl~d~~~~~w~~~~l~~~gi~~~~LP~l~~~g~~~G~i 248 (297)
+|+++ .+|++++|||.|+|||+ .++|+|+|+++++||+++++|++++++.+||++++||+++++++++|+|
T Consensus 147 ~~~~~----~~~l~~~dyl~~~LTG~-----~~~d~s~As~t~l~d~~~~~w~~ell~~~gi~~~~lP~l~~~~~~~G~v 217 (465)
T TIGR02628 147 LFERM----HKFVFISSMITHRLTGE-----FTTDITMAGTSMMTDLTQRNWSPQILQALGLSRRLFPPLVEAGEQIGTL 217 (465)
T ss_pred HHHHH----HHhhCcHHHHHHHHhCC-----cccchhhhhcceeeecCcCCCCHHHHHHcCCCHHHCCCcccCCccceee
Confidence 99998 68999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred ------ccCCCCCCcEEEecchHHHHHHhcCCCCCCcEEEEecccccccccc
Q psy9351 249 ------VSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNT 294 (297)
Q Consensus 249 ------~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~v~~~t 294 (297)
.+||++|+||++|++|++|+++|+|+ .+|++++++|||.++.+.+
T Consensus 218 ~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~ 268 (465)
T TIGR02628 218 QNSAAAMLGLPVGVPVISAGHDTQFALFGSGA-EQNQPVLSSGTWEILMARS 268 (465)
T ss_pred CHHHHHHhCCCCCCCEEecCccHHHHHhccCC-CCCcEEEeccchhhheecc
Confidence 47999999999999999999999997 8999999999998766554
No 10
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=100.00 E-value=1.1e-54 Score=423.05 Aligned_cols=269 Identities=55% Similarity=0.944 Sum_probs=247.6
Q ss_pred CEEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCe
Q psy9351 10 PLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDI 89 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I 89 (297)
+|+||||+|||++|+++||. +|++++..+.+++..++.+|+.|+|++++|+.+.++++ + + ++++++.+++|
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~-~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~----~-~---~~~~~~~~~~i 71 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDK-DGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIA----E-A---LAKAGIKPDDI 71 (493)
T ss_pred CeEEEEecCCCceEEEEECC-CCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHH----H-H---HHHcCCChhhe
Confidence 58999999999999999997 99999999999988889999999999999999999999 7 5 45567777899
Q ss_pred eEEEEcCccceEEEEeCCCCccccccccccccCCHHHHHHHHHhCCCChhhhHHhhhCCCCCCcchHHHHHHHHHhChhh
Q psy9351 90 VAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKV 169 (297)
Q Consensus 90 ~~Igis~~~~~~v~vd~~~g~~~~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~ 169 (297)
.+||++++++++++||+++|+|++|++.|.|.|+.++++++++.+.. +.+++++|.++.+.++++||+|+++|+||+
T Consensus 72 ~aIgis~~~~~~v~~D~~~G~~l~p~i~w~D~R~~~~~~~l~~~~~~---~~~~~~tG~~~~~~~~~~kl~wlk~~~Pe~ 148 (493)
T TIGR01311 72 AAIGITNQRETTVVWDKATGKPLYNAIVWQDRRTASICEELKAEGYG---EFIREKTGLPLDPYFSATKLRWLLDNVPGV 148 (493)
T ss_pred eEEEEecCcceEEEEECCCCcCcccceeecccchHHHHHHHHHhcch---HHHHHHhCCcCCccchHHHHHHHHhcCHHH
Confidence 99999999999999997359999999999999999999999887653 578999999999999999999999999999
Q ss_pred HhhhhcCceeeeChhHHHHHHHcC--CCCCCceEeeccccccccCccCCCCCCcHHHhcccCCCCCCCCCcccCCcceee
Q psy9351 170 KEAIDQNRCCIGTVDTWIIWNLTG--GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGH 247 (297)
Q Consensus 170 ~~~~~~~~~~~~~~~dyi~~~LtG--~~~~~~~~~d~s~a~~tgl~d~~~~~w~~~~l~~~gi~~~~LP~l~~~g~~~G~ 247 (297)
|++++.+..+|++++|||.|+||| + .++|+|+|+++++||+++++|++++++.+||++++||+|+++++++|+
T Consensus 149 ~~~~~~~~~~~~~~~dyl~~~LtG~~~-----~~~d~s~As~t~l~d~~~~~W~~~~l~~~gi~~~~lP~l~~~g~~~G~ 223 (493)
T TIGR01311 149 REAAERGELLFGTIDTWLIWNLTGGKV-----HVTDVTNASRTMLFNIHTLDWDDELLELFGIPREILPEVRSSSEVYGY 223 (493)
T ss_pred HHHhhcCCeEEECHhHhhhhhccCCce-----EEeccchhhhhhcccccccccCHHHHHHcCCCHHHCCCccCCccceec
Confidence 998853335799999999999999 8 999999999999999999999999999999999999999999999999
Q ss_pred cc-cCCCCCCcEEEecchHHHHHHhcCCCCCCcEEEEeccccccccccc
Q psy9351 248 FV-SGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295 (297)
Q Consensus 248 i~-~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~v~~~t~ 295 (297)
++ .|+.+|+||++|++|++|+++|+|+.++|++++++|||+++.+.++
T Consensus 224 v~~~~l~~g~pV~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~ 272 (493)
T TIGR01311 224 TDPGLLGAEIPITGVLGDQQAALFGQACFKPGQAKNTYGTGCFLLMNTG 272 (493)
T ss_pred ccccccCCCceEEEecccHHHHHhhCcCCCCCceEEeecccceEeeecC
Confidence 93 3788999999999999999999999999999999999988666543
No 11
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=100.00 E-value=2.7e-54 Score=422.68 Aligned_cols=265 Identities=26% Similarity=0.401 Sum_probs=240.6
Q ss_pred CCEEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccc--cCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCC
Q psy9351 9 GPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQT--FPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEP 86 (297)
Q Consensus 9 ~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~--~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~ 86 (297)
|+|+||||+|||++|+++||. +|++++..+.+++.. .+.+|+.|||+++||++++++++ + + +++++..+
T Consensus 2 m~~~lgID~GTts~Ka~l~d~-~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~----~-~---~~~~~~~~ 72 (520)
T PRK10939 2 MSYLMALDAGTGSIRAVIFDL-NGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIR----Q-A---LQKAGIPA 72 (520)
T ss_pred CcEEEEEecCCCceEEEEECC-CCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHH----H-H---HHHcCCCc
Confidence 359999999999999999997 999999988887644 45689999999999999999999 7 6 44566667
Q ss_pred CCeeEEEEcCccceEEEEeCCCCccccccccccccCCHHHHHHHHHhCCCChhhhHHhhhCCCCCCcchHHHHHHHHHhC
Q psy9351 87 TDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNV 166 (297)
Q Consensus 87 ~~I~~Igis~~~~~~v~vd~~~g~~~~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~ 166 (297)
++|.+||+|+|++++++||+ +|+|+++ +.|.|.|+.++++++++..+. ..+.+++.+|.++ +.++++||+|+++|+
T Consensus 73 ~~I~aI~~s~~~~~~v~~D~-~g~pl~~-~~~~D~Ra~~~~~~l~~~~~~-~~~~~~~~tG~~~-~~~~~~kl~Wl~~~~ 148 (520)
T PRK10939 73 SDIAAVSATSMREGIVLYDR-NGTEIWA-CANVDARASREVSELKELHNN-FEEEVYRCSGQTL-ALGALPRLLWLAHHR 148 (520)
T ss_pred cceEEEEEECCcccEEEECC-CCCEeeC-CcCCCcccHHHHHHHHHhcCh-HHHHHHHHhCCcC-CcchHHHHHHHHHcC
Confidence 88999999999999999999 7999976 579999999999999876542 1257889999875 678999999999999
Q ss_pred hhhHhhhhcCceeeeChhHHHHHHHcCCCCCCceEeeccccccccCccCCCCCCcHHHhcccCCCCCCCCCcccCCccee
Q psy9351 167 PKVKEAIDQNRCCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYG 246 (297)
Q Consensus 167 p~~~~~~~~~~~~~~~~~dyi~~~LtG~~~~~~~~~d~s~a~~tgl~d~~~~~w~~~~l~~~gi~~~~LP~l~~~g~~~G 246 (297)
|++|+++ .+|++++|||.|+|||+ .++|+|+|+++++||+++++|++++++.+||++++||+|+++++++|
T Consensus 149 pe~~~~~----~~~~~~~dyl~~~LTG~-----~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~lP~i~~~g~~~G 219 (520)
T PRK10939 149 PDIYRQA----HTITMISDWIAYMLSGE-----LAVDPSNAGTTGLLDLVTRDWDPALLEMAGLRADILPPVKETGTVLG 219 (520)
T ss_pred cHHHHHh----heEechhHhhhheeeCc-----eeeEhhhhhceeeeecCCCCCCHHHHHHcCCCHHHCCCCccCCceee
Confidence 9999998 79999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred ec------ccCCCCCCcEEEecchHHHHHHhcCCCCCCcEEEEeccccccccccc
Q psy9351 247 HF------VSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295 (297)
Q Consensus 247 ~i------~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~v~~~t~ 295 (297)
+| .+||++|+||++|++|++|+++|+|++++|++++++|||.++.+++.
T Consensus 220 ~v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~ 274 (520)
T PRK10939 220 HVTAKAAAETGLRAGTPVVMGGGDVQLGCLGLGVVRPGQTAVLGGTFWQQVVNLP 274 (520)
T ss_pred eecHHHHHhhCCCCCCcEEEeCchHHHHHhhcCcccCCcEEEeecCcceeEEecc
Confidence 99 57999999999999999999999999999999999999988766553
No 12
>PRK15027 xylulokinase; Provisional
Probab=100.00 E-value=1.4e-54 Score=421.44 Aligned_cols=258 Identities=23% Similarity=0.378 Sum_probs=239.9
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCee
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIV 90 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~ 90 (297)
++||||+|||++|+++||. +|++++..+.+++..++.+|+.|||+++||++++++++ + + +++. ..++|.
T Consensus 1 ~~lgID~GTts~Ka~l~d~-~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~----~-l---~~~~--~~~~I~ 69 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNE-QGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMK----A-L---GDQH--SLQDVK 69 (484)
T ss_pred CEEEEEecccceEEEEEcC-CCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHH----H-H---HHhC--Ccccee
Confidence 4799999999999999997 99999999999988888899999999999999999999 7 5 3332 356899
Q ss_pred EEEEcCccceEEEEeCCCCccccccccccccCCHHHHHHHHHhCCCChhhhHHhhhCCCCCCcchHHHHHHHHHhChhhH
Q psy9351 91 AVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVK 170 (297)
Q Consensus 91 ~Igis~~~~~~v~vd~~~g~~~~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~ 170 (297)
+||+|+|+++++++|+ +|+|++|+++|+|.|+.++++++.+..+ .+++.+|.++.+.++++||+|+++|+|++|
T Consensus 70 aI~is~q~~~~v~~D~-~g~~l~p~i~w~D~R~~~~~~~l~~~~~-----~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~ 143 (484)
T PRK15027 70 ALGIAGQMHGATLLDA-QQRVLRPAILWNDGRCAQECALLEARVP-----QSRVITGNLMMPGFTAPKLLWVQRHEPEIF 143 (484)
T ss_pred EEEEecCCCceEEECC-CcCCccccccccCccHHHHHHHHHHhcc-----hhHHHhCCCcCccchHHHHHHHHHhCHHHH
Confidence 9999999999999999 7999999999999999999999987653 356799999999999999999999999999
Q ss_pred hhhhcCceeeeChhHHHHHHHcCCCCCCceEeeccccccccCccCCCCCCcHHHhcccCCCCCCCCCcccCCcceeec--
Q psy9351 171 EAIDQNRCCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHF-- 248 (297)
Q Consensus 171 ~~~~~~~~~~~~~~dyi~~~LtG~~~~~~~~~d~s~a~~tgl~d~~~~~w~~~~l~~~gi~~~~LP~l~~~g~~~G~i-- 248 (297)
+++ .+|++++|||.|+|||+ .++|+|+|+++++||+++++|++++++.+||++++||+++++++++|+|
T Consensus 144 ~~~----~~~~~~~dyl~~~LTG~-----~~~d~s~as~t~l~d~~~~~w~~~ll~~~gi~~~~lP~v~~~~~~~G~l~~ 214 (484)
T PRK15027 144 RQI----DKVLLPKDYLRLRMTGE-----FASDMSDAAGTMWLDVAKRDWSDVMLQACHLSRDQMPALYEGSEITGALLP 214 (484)
T ss_pred HHh----hhhcChHHHHHhhhcCC-----ccccHHHhhcccccccccCCCcHHHHHHhCCCHHHCCCCCCCccccccccH
Confidence 998 79999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred ----ccCCCCCCcEEEecchHHHHHHhcCCCCCCcEEEEeccccccccccc
Q psy9351 249 ----VSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295 (297)
Q Consensus 249 ----~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~v~~~t~ 295 (297)
++||+ ++||++|++|++|+++|+|+.++|++++++|||+++.+++.
T Consensus 215 ~~a~~~GL~-~~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~ 264 (484)
T PRK15027 215 EVAKAWGMA-TVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSE 264 (484)
T ss_pred HHHHHhCCC-CCeEEecccHHHHHHhccCcccCCcEEEEecCceEEEEecC
Confidence 47997 69999999999999999999999999999999988776654
No 13
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=100.00 E-value=8.8e-52 Score=401.36 Aligned_cols=261 Identities=27% Similarity=0.426 Sum_probs=244.3
Q ss_pred EEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeEE
Q psy9351 13 GAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVAV 92 (297)
Q Consensus 13 lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~I 92 (297)
||||+|||++|++++|. +|+++++.+.+++..++.+|+.++|++++|+.+.++++ + + +++++..+++|.+|
T Consensus 1 lgIDiGtt~ik~~l~d~-~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~----~-~---~~~~~~~~~~I~gI 71 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE-QGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIK----E-L---LEQASEMGQDIKGI 71 (481)
T ss_pred CceeecCcceEEEEECC-CCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHH----H-H---HHhcCCCcccEEEE
Confidence 58999999999999997 99999999999988888999999999999999999999 7 6 45667777899999
Q ss_pred EEcCccceEEEEeCCCCccccccccccccCCHHHHHHHHHhCCCChhhhHHhhhCCCCCCcchHHHHHHHHHhChhhHhh
Q psy9351 93 GVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEA 172 (297)
Q Consensus 93 gis~~~~~~v~vd~~~g~~~~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~ 172 (297)
|++++++|+|+||+ +|+++.|++.|.|.|..++++++.+.++. +.+++.+|....+.++++||+|+++|+|+++++
T Consensus 72 gvs~~~~g~v~~d~-~g~~l~~~i~W~D~r~~~~~~~l~~~~~~---~~~~~~~g~~~~~~~~~~kl~wl~~~~p~~~~~ 147 (481)
T TIGR01312 72 GISGQMHGLVLLDA-NGEVLRPAILWNDTRTAQECEELEAELGD---ERVLEITGNLALPGFTAPKLLWVRKHEPEVFAR 147 (481)
T ss_pred EEecCCceeEEECC-CcCCCccchhhhccchHHHHHHHHHhcCH---hHHHHHHCCCCCccchHHHHHHHHHcChHHHHH
Confidence 99999999999998 79999999999999999988888877642 568899999999999999999999999999998
Q ss_pred hhcCceeeeChhHHHHHHHcCCCCCCceEeeccccccccCccCCCCCCcHHHhcccCCCCCCCCCcccCCcceeec----
Q psy9351 173 IDQNRCCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHF---- 248 (297)
Q Consensus 173 ~~~~~~~~~~~~dyi~~~LtG~~~~~~~~~d~s~a~~tgl~d~~~~~w~~~~l~~~gi~~~~LP~l~~~g~~~G~i---- 248 (297)
+ .+|++++|||.|+|||+ .++|+++|+++++||+++++|++++++.+|+++++||+|+++++++|++
T Consensus 148 ~----~~~~~~~~yi~~~LtG~-----~~~d~t~as~tgl~d~~~~~W~~~~l~~~gi~~~~Lp~iv~~~~~~G~v~~~~ 218 (481)
T TIGR01312 148 I----AKVMLPKDYLRYRLTGE-----YVTEYSDASGTGWFDVAKRAWSKELLDALDLPESQLPELIESSEKAGTVRPEV 218 (481)
T ss_pred h----heeeCchHHHhhhhcCC-----eeeeHHHhhcccccccCCCCCCHHHHHHhCCCHHHCCCccCCCCeeeeEcHHH
Confidence 8 79999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred --ccCCCCCCcEEEecchHHHHHHhcCCCCCCcEEEEeccccccccccc
Q psy9351 249 --VSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295 (297)
Q Consensus 249 --~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~v~~~t~ 295 (297)
++||++|+||++|++|++|+++|+|+.++|++++++|||.++.+++.
T Consensus 219 a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~ 267 (481)
T TIGR01312 219 AARLGLSAGVPVAAGGGDNAAGAIGTGTVDPGDAMMSLGTSGVVYAVTD 267 (481)
T ss_pred HHHhCCCCCCeEEecchHHHHHhhCCCcccCCcEEEEecCceEEEEecC
Confidence 47999999999999999999999999999999999999998877764
No 14
>PLN02669 xylulokinase
Probab=100.00 E-value=9.8e-52 Score=406.16 Aligned_cols=266 Identities=21% Similarity=0.265 Sum_probs=240.2
Q ss_pred CCEEEEEecCCCcceEEEEeCCCCeEEEEEEeeecc---ccCCCCeeEeCHH----------HHHHHHHHHHHhhhhHHH
Q psy9351 9 GPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQ---TFPTEGWVEQDPM----------EILAVVNGTIEACQFSAC 75 (297)
Q Consensus 9 ~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~---~~~~~g~~e~d~~----------~~~~~i~~~i~~~~~~~~ 75 (297)
++|+||||+|||++|+++||. +|++++..+.+++. .++.+|++|+||+ .||+++..+++ + +
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~-~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~----~-l 80 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDS-NLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQ----K-L 80 (556)
T ss_pred CCeEEEEecccCCeEEEEEcC-CCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHH----H-H
Confidence 568999999999999999997 99999999999873 3455678999998 67799999998 7 4
Q ss_pred HHHHHHcCCCCCCeeEEEEcCccceEEEEeCCCCccc-------------------cccccccccCCHHHHHHHHHhCCC
Q psy9351 76 VEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPL-------------------YNSIVWLDARTTSTLEKILEVVPN 136 (297)
Q Consensus 76 ~~~l~~~~~~~~~I~~Igis~~~~~~v~vd~~~g~~~-------------------~~~i~w~D~R~~~~~~~l~~~~~~ 136 (297)
.+++.+.++|.+|++|+|+|++|+||+++++|+ .|.+.|+|.|+.++++++.+.+++
T Consensus 81 ----~~~~~~~~~I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~gg 156 (556)
T PLN02669 81 ----AKEKFPFHKVVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAVGG 156 (556)
T ss_pred ----HHcCCChhhEEEEEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHcCc
Confidence 345667789999999999999999988557776 688899999999999999987763
Q ss_pred ChhhhHHhhhCCCCCCcchHHHHHHHHHhChhhHhhhhcCceeeeChhHHHHHHHcCCCCCCce-EeeccccccccCccC
Q psy9351 137 KNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTGGKDGGKY-ITDVSNASRTMLMNI 215 (297)
Q Consensus 137 ~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~dyi~~~LtG~~~~~~~-~~d~s~a~~tgl~d~ 215 (297)
.+.++++||.++++.++.+|++|+++|+||+|+++ .+|+.++|||.|+|||+ . .+|+|+|+++++||+
T Consensus 157 --~~~l~~~tG~~~~~~~t~~ki~wl~~~~Pe~y~~t----~~i~~~~dyl~~~LtG~-----~~~~D~sdasg~~l~Di 225 (556)
T PLN02669 157 --AAELSKLTGSRAYERFTGPQIRKIYETQPEVYHDT----ERISLVSSFMASLLVGD-----YASIDETDGAGMNLMDI 225 (556)
T ss_pred --HHHHHHHHCCcccccccHHHHHHHHHhChHHHHHH----HhhccHHHHHHHhhcCC-----Cccccchhhhhhhhhcc
Confidence 35788999999999999999999999999999998 79999999999999998 6 599999999999999
Q ss_pred CCCCCcHHHhcccCCC-CCCCCCcccCCcceeec------ccCCCCCCcEEEecchHHHHHHhcCCCCCCcEEEEecccc
Q psy9351 216 ETLEWDPMLCGFFTIP-MDILPTICSSSEIYGHF------VSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGC 288 (297)
Q Consensus 216 ~~~~w~~~~l~~~gi~-~~~LP~l~~~g~~~G~i------~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~ 288 (297)
++++|++++++.++++ +++||+++++++++|+| ++||++|+||++|++|++|+++|+|+.++|++.+++|||.
T Consensus 226 ~~~~Ws~~ll~~~~~~l~~~Lp~~~~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~g~~~~g~~~~slGTs~ 305 (556)
T PLN02669 226 EKRCWSKAALEATAPGLEEKLGKLAPAHAVAGKIHPYFVQRFGFSSNCLVVQWSGDNPNSLAGLTLSTPGDLAISLGTSD 305 (556)
T ss_pred ccCCcCHHHHHhhCccHHHHCcCCCCCCcceeeeCHHHHHHhCCCCCCEEEEecchHHHHHhccCCCCCCeEEEEEcccc
Confidence 9999999999999654 37999999999999999 5899999999999999999999999999999999999999
Q ss_pred ccccccc
Q psy9351 289 FLLYNTG 295 (297)
Q Consensus 289 ~v~~~t~ 295 (297)
++.+++.
T Consensus 306 ~~~~~~~ 312 (556)
T PLN02669 306 TVFGITR 312 (556)
T ss_pred eEEEecC
Confidence 8877764
No 15
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=100.00 E-value=7.9e-52 Score=399.17 Aligned_cols=256 Identities=17% Similarity=0.252 Sum_probs=233.7
Q ss_pred EEEecCCCcceEEEEeCCC---CeEE-EEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCC
Q psy9351 13 GAIDEGTSSCRFIVFSALT---GKLV-AKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTD 88 (297)
Q Consensus 13 lgIDiGtt~ik~~l~d~~~---g~v~-~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~ 88 (297)
|+||+|||++|++++|. + |+++ +....+.+...+.+++.++|++.||+++.++++ + + . +. ..+
T Consensus 1 ~aiD~Gtt~~k~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~----~-~---~-~~---~~~ 67 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY-ENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLN----K-V---D-AE---GIA 67 (454)
T ss_pred CcEeccCCchheEEEEE-cCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHH----H-H---h-cc---CCC
Confidence 58999999999999997 6 5776 666677777788999999999999999999999 6 4 1 11 346
Q ss_pred eeEEEEcCccceEEEEeCCCCccccccccccccCCHHHHHHHHHhCCCChhhhHHhhhCCCCCCcchHHHHHHHHHhChh
Q psy9351 89 IVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPK 168 (297)
Q Consensus 89 I~~Igis~~~~~~v~vd~~~g~~~~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~ 168 (297)
|.+|||++|++++|++|+ +|+|++|+|.|+|.|+.++++++.+..+. +.+|+.+|+++.+.++++||+|+++|+|+
T Consensus 68 i~~Igis~q~~~~v~~D~-~G~~l~p~i~w~D~R~~~~~~~l~~~~~~---~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~ 143 (454)
T TIGR02627 68 PDSIGIDTWGVDFVLLDQ-NGQRVGDPVSYRDSRTDGVMAQVQSELGK---EAIYQRTGIQFLPFNTLYQLRALTEQQPD 143 (454)
T ss_pred ceEEEEeccceeEEEEcC-CCCCccCceecCCCCCHHHHHHHHhhcCH---HHHHHHhCCCcCCccHHHHHHHHHHhChh
Confidence 999999999999999999 79999999999999999999999887653 67899999999999999999999999999
Q ss_pred hHhhhhcCceeeeChhHHHHHHHcCCCCCCceEeeccccccccCccCCCCCCcHHHhcccCCCCCCCCCcccCCcceeec
Q psy9351 169 VKEAIDQNRCCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHF 248 (297)
Q Consensus 169 ~~~~~~~~~~~~~~~~dyi~~~LtG~~~~~~~~~d~s~a~~tgl~d~~~~~w~~~~l~~~gi~~~~LP~l~~~g~~~G~i 248 (297)
+|+++ .+|++++|||.|+|||+ .++|+|+||++++||+++++|++++++.+||++++||+|+++++++|.+
T Consensus 144 ~~~~~----~~~l~~~dyl~~~LTG~-----~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~l~~~~~~~G~~ 214 (454)
T TIGR02627 144 LLEKV----AHFLLIPDYLNYRLTGK-----KVWEYTNATTTQLVNINTDDWDEDLLAYLGVPAAWFGRPTHPGNVIGLW 214 (454)
T ss_pred HHHHH----HHhCCHHHHHHHheeCC-----ceeeeehhhhcccccCCCCCcCHHHHHHcCCCHHHcCCccCCCCeeEEe
Confidence 99998 68999999999999999 9999999999999999999999999999999999999999999999998
Q ss_pred -ccCCCCCCcEEE-ecchHHHHHHhcCCCCCCcEEEEeccccccccccc
Q psy9351 249 -VSGPLKGVPISG-CLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295 (297)
Q Consensus 249 -~~Gl~~g~pV~~-g~~D~~aa~~g~g~~~~g~~~~~~GTs~~v~~~t~ 295 (297)
..|+ +|+||++ |++|++|+++|+|+.++|++++++|||.++.+.+.
T Consensus 215 ~~~gl-~g~pVv~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~ 262 (454)
T TIGR02627 215 ECPQG-NQIPVVAVATHDTASAVVAAPLQGENAAYLSSGTWSLMGFESQ 262 (454)
T ss_pred ecccC-CCCCEEEECCchHHHHHhcCCCCCCCcEEEEEcHHHHhcccCC
Confidence 4577 7999988 88999999999999999999999999988766654
No 16
>PRK04123 ribulokinase; Provisional
Probab=100.00 E-value=1.3e-51 Score=406.25 Aligned_cols=273 Identities=21% Similarity=0.238 Sum_probs=240.8
Q ss_pred cCCEEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccc------cCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy9351 8 YGPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQT------FPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKE 81 (297)
Q Consensus 8 ~~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~------~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~ 81 (297)
|++|+||||+|||++|+++||.++|+++++.+.+++.. +|.+|++||||++||++++++++ + + +++
T Consensus 1 ~~~~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~----~-~---~~~ 72 (548)
T PRK04123 1 MMAYVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIP----A-V---LKE 72 (548)
T ss_pred CCcEEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHH----H-H---HHH
Confidence 55699999999999999999932899999998888743 58899999999999999999999 7 6 555
Q ss_pred cCCCCCCeeEEEEcCccceEEEEeCCCCcccc-----------ccccccccCCHHHHHHHHHhCCCChhhhHHhhh-CCC
Q psy9351 82 QGIEPTDIVAVGVTNQRESTIAWDKITGEPLY-----------NSIVWLDARTTSTLEKILEVVPNKNKNYLAPLC-GLP 149 (297)
Q Consensus 82 ~~~~~~~I~~Igis~~~~~~v~vd~~~g~~~~-----------~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~~~t-G~~ 149 (297)
+++.+.+|.+||+++|+++++++|+ +|+|++ |+|.|+|.|+.++++++++..+. ..+.+++.+ |.+
T Consensus 73 ~~~~~~~I~aIgis~~~~~~v~~D~-~G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l~~~~~~-~~~~~~~~~~g~~ 150 (548)
T PRK04123 73 AGVDPAAVVGIGVDFTGSTPAPVDA-DGTPLALLPEFAENPHAMVKLWKDHTAQEEAEEINRLAHE-RGEADLSRYIGGI 150 (548)
T ss_pred cCCChhhEEEEEEecccceeEEECC-CCCEeecccccccCcccceeEeccCCHHHHHHHHHHHhcc-chhhHHHHhcCCc
Confidence 6777788999999999999999999 799997 89999999999999999876531 013467555 989
Q ss_pred CCCcchHHHHHHHHHhChhhHhhhhcCceeeeChhHHHHHHHcCCCCCCceEeeccccccccCccCC-CCCCcHHHhccc
Q psy9351 150 LSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIE-TLEWDPMLCGFF 228 (297)
Q Consensus 150 ~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~dyi~~~LtG~~~~~~~~~d~s~a~~tgl~d~~-~~~w~~~~l~~~ 228 (297)
+.+.++++||+|+++|+|++++++ .+|++++|||.|+|||+.......+|+++++.+++||++ .+.|++++|+.+
T Consensus 151 ~~~~~~~~kl~Wl~~~~P~~~~~~----~~~l~~~dyl~~~LTG~~~~~~~~~~~~~as~~~~~d~~~~~~~s~ell~~~ 226 (548)
T PRK04123 151 YSSEWFWAKILHVLREDPAVYEAA----ASWVEACDWVVALLTGTTDPQDIVRSRCAAGHKALWHESWGGLPSADFFDAL 226 (548)
T ss_pred cCcchHHHHHHHHHhhCHHHHHHH----hHhccHHHHHHHHHhCCCCccccccchhhcccccccccccCCCCCHHHHHHh
Confidence 999999999999999999999988 789999999999999953222388999999999999999 566699999999
Q ss_pred C------CCCCCCCCcccCCcceeec------ccCCCCCCcEEEecchHHHHHHhcCCCCCCcEEEEeccccccccccc
Q psy9351 229 T------IPMDILPTICSSSEIYGHF------VSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295 (297)
Q Consensus 229 g------i~~~~LP~l~~~g~~~G~i------~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~v~~~t~ 295 (297)
| |++++||+|+++++++|+| .+||++|+||++|++|++|+++|+|+ ++|++++++||++++.+++.
T Consensus 227 g~~l~~~i~~~llP~l~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G~g~-~~g~~~~~~GTs~~~~~~~~ 304 (548)
T PRK04123 227 DPLLARGLRDKLFTETWTAGEPAGTLTAEWAQRLGLPEGVAVSVGAFDAHMGAVGAGA-EPGTLVKVMGTSTCDILLAD 304 (548)
T ss_pred ccchhhhhHhhcCCccccCCCcccccCHHHHHHhCCCCCCeEEecchhhhhhhcccCc-CCCcEEEEecCceEEEEecC
Confidence 6 8899999999999999999 47999999999999999999999999 99999999999988777654
No 17
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=100.00 E-value=2.3e-51 Score=403.22 Aligned_cols=264 Identities=20% Similarity=0.230 Sum_probs=236.8
Q ss_pred EEEEEecCCCcceEEEEe-CCCCeEEEEEEeeecc-----ccCC------CCeeEeCHHHHHHHHHHHHHhhhhHHHHHH
Q psy9351 11 LVGAIDEGTSSCRFIVFS-ALTGKLVAKHQISLGQ-----TFPT------EGWVEQDPMEILAVVNGTIEACQFSACVEK 78 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d-~~~g~v~~~~~~~~~~-----~~~~------~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~ 78 (297)
|+||||+|||++|++||| . +|++++..+.+++. .+|. +|++||||++||++++++++ + +
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~-~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~----~-~--- 72 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVA-TGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIP----T-V--- 72 (536)
T ss_pred eEEEEecCCCceEEEEEECC-CCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHH----H-H---
Confidence 789999999999999999 7 89999999988873 3554 89999999999999999999 7 6
Q ss_pred HHHcCCCCCCeeEEEEcCccceEEEEeCCCCccccc-----------cccccccCCHHHHHHHHHhCCCChhhhHHhhhC
Q psy9351 79 LKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYN-----------SIVWLDARTTSTLEKILEVVPNKNKNYLAPLCG 147 (297)
Q Consensus 79 l~~~~~~~~~I~~Igis~~~~~~v~vd~~~g~~~~~-----------~i~w~D~R~~~~~~~l~~~~~~~~~~~~~~~tG 147 (297)
+++.+..+++|.+||+|+|++|++++|+ +|+|++| +|.|+|.|+.++++++++.... ..+.+++++|
T Consensus 73 ~~~~~~~~~~I~aI~~s~q~~s~v~~D~-~g~pl~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~-~~~~~~~~tG 150 (536)
T TIGR01234 73 LAELGVDPADVVGIGVDFTACTPAPIDS-DGNPLCLLPEFAENPHAYFKLWKHHAAQEEADRINRLAHA-PGEVDLSRYG 150 (536)
T ss_pred HHHcCCCHHHEEEEEEecCcceeEEECC-CCCEeecccccccCcccceeeeccCCcHHHHHHHHHHhhc-cchhHHHhhC
Confidence 4556666778999999999999999999 7999983 8999999999999999876520 0146789999
Q ss_pred CCCCCcchHHHHHHHHHhChhhHhhhhcCceeeeChhHHHHHHHcCCCCCCceEeeccccccccCccCCCCCCcHHHhcc
Q psy9351 148 LPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGF 227 (297)
Q Consensus 148 ~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~dyi~~~LtG~~~~~~~~~d~s~a~~tgl~d~~~~~w~~~~l~~ 227 (297)
.++.+.++++||+|+++|+|++++++ .+|++++|||.|+|||+ .++|++.++.+++++...+.|++++++.
T Consensus 151 ~~~~~~~~~~kl~Wl~~~~pe~~~~~----~~~l~~~dyl~~~LTG~-----~~~d~s~a~~~~l~~~~w~~~~~~~l~~ 221 (536)
T TIGR01234 151 GIISSEWFWAKILQITEEDPAIYQAA----DRWIELADWIVAQLSGD-----IRRGRCTAGYKALWHESWGYPSASFFDE 221 (536)
T ss_pred CccCchhHHHHHHHHHhhChHHHHHH----hhhcCHHHHHHHHHhCC-----ccccchhcccceeccccccCCCHHHHHH
Confidence 99999999999999999999999988 78999999999999999 9999999999988776655559999999
Q ss_pred cCC------CCCCCCCcccCCcceeec------ccCCCCCCcEEEecchHHHHHHhcCCCCCCcEEEEecccccccccc
Q psy9351 228 FTI------PMDILPTICSSSEIYGHF------VSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNT 294 (297)
Q Consensus 228 ~gi------~~~~LP~l~~~g~~~G~i------~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~v~~~t 294 (297)
+|+ ++++||+|+++++++|+| ++||++|+||++|++|++|+++|+|+.++|++++++|||.++.+++
T Consensus 222 ~g~~~~~~lp~~~~p~i~~~g~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~ 300 (536)
T TIGR01234 222 LNPILNRHLPDKLFTDIWTAGEPAGTLTPEWAQRTGLPEGVVVAVGNFDAHVGAVAAGIAQPGALVKIMGTSTCHVLIG 300 (536)
T ss_pred hcchhhhhhhhhcCCceecCCCcccccCHHHHHHhCCCCCCeEEecchhHhhhhhccccccCCcEEEEEccceEEEEec
Confidence 985 789999999999999998 4799999999999999999999999999999999999998766553
No 18
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=100.00 E-value=2.9e-51 Score=402.79 Aligned_cols=259 Identities=23% Similarity=0.324 Sum_probs=235.1
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCee
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIV 90 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~ 90 (297)
++||||+|||++|+++||. +|+++++.+.+++..++.+|+.||||++||+.+.++++ + + +++.+...++|.
T Consensus 1 ~~lgID~GTts~Ka~l~d~-~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~----~-~---~~~~~~~~~~I~ 71 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDS-TGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVK----Q-V---LAESKVDPNSVK 71 (541)
T ss_pred CEEEEEecCcCEEEEEEcC-CCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHH----H-H---HHHcCCChhheE
Confidence 3799999999999999997 99999999999988889999999999999999999999 7 6 455666678899
Q ss_pred EEEEcCccceEEEEeCCCCccc---------cccccccccCCHHHHHHHHHhCCCChhhhHHhhhCCCCCCcchHHHHHH
Q psy9351 91 AVGVTNQRESTIAWDKITGEPL---------YNSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINW 161 (297)
Q Consensus 91 ~Igis~~~~~~v~vd~~~g~~~---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~w 161 (297)
+|||+++ ++++++|+ +|+|+ +|+|+|+|.|+.++++++++.. ..+++++|.++.+.++++||+|
T Consensus 72 ~Igis~~-~s~v~~D~-~g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~-----~~~~~~tG~~~~~~~~~~kl~W 144 (541)
T TIGR01315 72 GIGFDAT-CSLVVLTH-DGEPLPVSKNGGADQNIILWMDHRALAEAEKINATN-----HNLLRYVGGKMSVEMEIPKVLW 144 (541)
T ss_pred EEEeccc-ccceEEcC-CCCeeecCCCCCcccceeEeecCcHHHHHHHHHHHH-----HHHHHHhCCeeCcchhHHHHHH
Confidence 9999999 89999999 69999 8999999999999999997642 3588999999999999999999
Q ss_pred HHHhChhhHhhhhcCceeeeChhHHHHHHHcCCCCCCceEeeccccccccCcc---CCCCCCcHHHhcccCCCC---CCC
Q psy9351 162 LMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMN---IETLEWDPMLCGFFTIPM---DIL 235 (297)
Q Consensus 162 l~~~~p~~~~~~~~~~~~~~~~~dyi~~~LtG~~~~~~~~~d~s~a~~tgl~d---~~~~~w~~~~l~~~gi~~---~~L 235 (297)
+++|+|++++++ .+|++++|||.|+|||+ .++|+++++.+++|| +++++|++++++.+||+. +.|
T Consensus 145 l~~~~Pe~~~~~----~~~l~~~dyl~~~LTG~-----~~~d~~~as~~~~~d~~d~~~~~W~~ell~~~Gi~~~~~~~l 215 (541)
T TIGR01315 145 LKNNMPPELFAR----CKFFDLTDFLTWRATGK-----EIRSFCSVVCKWGFVPVDGSNKGWQEDFYETIGLGELVTDNF 215 (541)
T ss_pred HHHhChHHHHHh----hhhcchhhhheeeeecc-----hhHhHhHHhHhhhccccccccCCCCHHHHHHcCChhhhhccc
Confidence 999999999988 79999999999999999 999999999888888 699999999999999994 234
Q ss_pred ----CCcccCCcceee-c------ccCCCCCCcEEEecchHHHHHHhcCC---CCCC-------cEEEEecccccccccc
Q psy9351 236 ----PTICSSSEIYGH-F------VSGPLKGVPISGCLGDQHAALLGQNC---LKPG-------LAKSTYGTGCFLLYNT 294 (297)
Q Consensus 236 ----P~l~~~g~~~G~-i------~~Gl~~g~pV~~g~~D~~aa~~g~g~---~~~g-------~~~~~~GTs~~v~~~t 294 (297)
|+++++++++|+ | .+||++|+||++|++|++|+++|+|+ +++| ++.+++|||+++.+++
T Consensus 216 ~~~lp~i~~~~~~~G~~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~g~~~~~~~g~~~~~~~~~~~~~GTs~~~~~~~ 295 (541)
T TIGR01315 216 IRMGGSWMSPGELVGGGLTAEAAQELGLPAGTAVGSGLIDAHAGWIGTVGAKVAENGDVSQAFTRLAAVAGTSTCHMAMT 295 (541)
T ss_pred cccCCcccCCCcccccccCHHHHHHhCCCCCCeEeechHhhhccccccccccccccccccCCCCcEEEEecCceEEEEec
Confidence 999999999998 7 47999999999999999999999975 6777 8889999998766554
No 19
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=100.00 E-value=7.2e-45 Score=351.88 Aligned_cols=234 Identities=17% Similarity=0.275 Sum_probs=210.5
Q ss_pred EEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeEEEEcCccceEEEEeCCCCcccccc
Q psy9351 36 AKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNS 115 (297)
Q Consensus 36 ~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~Igis~~~~~~v~vd~~~g~~~~~~ 115 (297)
..+++++.. ++.+++.++|++.||+.+.++++ + + .. ...+|.+||+|+|+++++++|+ +|+|++|+
T Consensus 16 e~~r~~~~~-~~~~~~~~~d~~~~~~~i~~~l~----~-~----~~---~~~~I~~Igis~q~~~~v~lD~-~G~pL~pa 81 (471)
T PRK10640 16 EIHRFNNGL-HSQDGFDTWDVDSLESAIRLGLN----K-V----CE---EGIRIDSIGIDTWGVDYVLLDK-QGQRVGLP 81 (471)
T ss_pred EEEecCCCC-eeeCCeeEECHHHHHHHHHHHHH----H-H----hh---cCCCccEEEEcCCcccEEEECC-CCCCcCCc
Confidence 345555543 46888999999999999999998 6 3 11 2467999999999999999999 79999999
Q ss_pred ccccccCCHHHHHHHHHhCCCChhhhHHhhhCCCCCCcchHHHHHHHHHhChhhHhhhhcCceeeeChhHHHHHHHcCCC
Q psy9351 116 IVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTGGK 195 (297)
Q Consensus 116 i~w~D~R~~~~~~~l~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~dyi~~~LtG~~ 195 (297)
|.|+|.|+.++++++.+.++. +.++++||+++.+.++++||+|+++|+|++++++ .+|++++|||.|+|||+
T Consensus 82 i~w~D~Ra~~~~~~l~~~~~~---~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~----~~~l~~~dyl~~~LTG~- 153 (471)
T PRK10640 82 VSYRDSRTDGVMAQAQQQLGK---RDIYRRSGIQFLPFNTLYQLRALTEQQPELIAQV----AHALLIPDYFSYRLTGK- 153 (471)
T ss_pred eeccCCCCHHHHHHHHHhcCH---HHHHHHhCCCCCCccHHHHHHHHHHhChHHHHHh----hHeecHHHHHHHHHhCC-
Confidence 999999999999999887753 6789999999999999999999999999999988 79999999999999999
Q ss_pred CCCceEeeccccccccCccCCCCCCcHHHhcccCCCCCCCCCcccCCcceeecccCCCCCCcEEE-ecchHHHHHHhcCC
Q psy9351 196 DGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVSGPLKGVPISG-CLGDQHAALLGQNC 274 (297)
Q Consensus 196 ~~~~~~~d~s~a~~tgl~d~~~~~w~~~~l~~~gi~~~~LP~l~~~g~~~G~i~~Gl~~g~pV~~-g~~D~~aa~~g~g~ 274 (297)
.++|+|+|++|++||+++++|++++++.+||++++||+|+++++++|.+...+.+|+||++ |++|++|+++|+|+
T Consensus 154 ----~~~d~s~as~t~l~d~~~~~W~~ell~~~Gi~~~~LP~lv~~~~~~G~v~~~~g~g~pVv~~g~~D~~aa~~g~g~ 229 (471)
T PRK10640 154 ----MNWEYTNATTTQLVNINSDDWDESLLAWSGAPKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTASAVIASPL 229 (471)
T ss_pred ----cceeecHhhhccccCCCcCCcCHHHHHHcCCCHHHcCCCcCCCccceeeecccCCCCCEEEeCCCcHHHHhhccCC
Confidence 9999999999999999999999999999999999999999999999998432337899998 68999999999999
Q ss_pred CCCCcEEEEeccccccccccc
Q psy9351 275 LKPGLAKSTYGTGCFLLYNTG 295 (297)
Q Consensus 275 ~~~g~~~~~~GTs~~v~~~t~ 295 (297)
.++|++++++|||+++.+++.
T Consensus 230 ~~~g~~~~s~GT~~~~~~~~~ 250 (471)
T PRK10640 230 NDSDAAYLSSGTWSLMGFESQ 250 (471)
T ss_pred CCCCeEEEEeccHhhhheecC
Confidence 999999999999998776653
No 20
>KOG2517|consensus
Probab=100.00 E-value=7.3e-43 Score=331.21 Aligned_cols=279 Identities=48% Similarity=0.772 Sum_probs=247.6
Q ss_pred CCEEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCC
Q psy9351 9 GPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTD 88 (297)
Q Consensus 9 ~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~ 88 (297)
.++++|||+||||+|+++||.++|+++..+..++....+.+||.||+|.++|+++++||+ . +++.+...+.....
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~----~-~~e~l~~~~~~~~~ 79 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIE----K-ACEKLGVLNIKVVG 79 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHH----H-HHHhhccccccccc
Confidence 689999999999999999996699999999999998899999999999999999999999 7 76655555555666
Q ss_pred eeEEEEcCccceEEEEeCCCCccccccccccccCCHHHHHHHHHhCCCChhhhHHhhhCCCCCCcchHHHHHHHHHhChh
Q psy9351 89 IVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPK 168 (297)
Q Consensus 89 I~~Igis~~~~~~v~vd~~~g~~~~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~ 168 (297)
+.+||++.|+++.|+|++.+|+|..++|.|+|.|+..++++++..... +.....+.+|.+++++|+.+||+|+++|.|+
T Consensus 80 ~~~igv~~qr~~~v~w~~~tg~p~~niI~W~D~Ra~~~~~~ln~~~~~-~~~~~~~~~Gl~~s~~f~~~KL~Wl~dn~~~ 158 (516)
T KOG2517|consen 80 ATCIGVVNQREGSVLWNKRTGEPLTNIIVWMDHRAVSEVEELNSSTPS-NLFLPRPYCGLPVSPEFSAPKLRWLLDNVPE 158 (516)
T ss_pred cEEEEEEecCCceEEeecCCCCcccceEEeeccccHHHHHHHHhcCCc-hhcccccccCCccccccchheehHHhhhCHH
Confidence 888999999999999999999999999999999999999999987653 1222447899999999999999999999999
Q ss_pred hHhhhhcCceeeeChhHHHHHHHcCCCCCCc-eEeeccccccccCccCCCCCCcHHHhcccCCCCCCCCCcccCCcceee
Q psy9351 169 VKEAIDQNRCCIGTVDTWIIWNLTGGKDGGK-YITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGH 247 (297)
Q Consensus 169 ~~~~~~~~~~~~~~~~dyi~~~LtG~~~~~~-~~~d~s~a~~tgl~d~~~~~w~~~~l~~~gi~~~~LP~l~~~g~~~G~ 247 (297)
+....+ ......++|+.|++++.+.... +.+|.++|+++++||..+..||..+++++|++.+.||++..+++++|+
T Consensus 159 ~~~~~~---~~~~~~~~~~twl~~~~t~~~~~~~~d~~Nas~t~~f~~~~~~wd~~~~~f~~lp~~llp~i~s~~e~~g~ 235 (516)
T KOG2517|consen 159 VLKAKE---EGGFDLGTFDTWLATGLTGRSSCHCTDVTNASRTGLFNTESGLWDLKLLDFFGLPLNLLPDIRSSSEVYGT 235 (516)
T ss_pred HHHHHH---hcccchhhhhhheeecCCccceeccccccccccccccchhhhhhhhhhhhhhCCCcccCCccccccccccc
Confidence 944443 4566667777777666654444 689999999999999999999999999999999999999999999999
Q ss_pred ccc---CCCCCCcEEEecchHHHHHHhcCCCCCCcEEEEecccccccccccC
Q psy9351 248 FVS---GPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGN 296 (297)
Q Consensus 248 i~~---Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~v~~~t~~ 296 (297)
+.. |+.+|+||.++.+|++|+++|..+.++|+.+.++||++++..+||.
T Consensus 236 ~~~~~~~~~~g~~vs~~lgDq~Aa~vg~~~~~~g~~~~t~~t~~Fl~~~~G~ 287 (516)
T KOG2517|consen 236 TAAGDLGLLEGTPVSSCLGDQQASMVGQMCYKPGCAKLTYGTGCFLLGVWGP 287 (516)
T ss_pred ccccccccccCcceeechhhHHHHHHhHhhhcCcceEEeeCCceEEeeccCC
Confidence 954 4999999999999999999999999999999999999999999985
No 21
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=100.00 E-value=1.7e-41 Score=319.75 Aligned_cols=264 Identities=26% Similarity=0.371 Sum_probs=239.1
Q ss_pred cCCEEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCC
Q psy9351 8 YGPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPT 87 (297)
Q Consensus 8 ~~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~ 87 (297)
|+.|+||||+||.|.|+++||..+|++++....|++...+..+..||++.++|++++.+++ + + ++++++++.
T Consensus 1 ~~~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr----~-~---v~~agv~~~ 72 (544)
T COG1069 1 MMAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVR----D-V---VAKAGVDPA 72 (544)
T ss_pred CccEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHH----H-H---HHHcCCChh
Confidence 5679999999999999999998569999999999998888889999999999999999999 7 6 677999999
Q ss_pred CeeEEEEcCccceEEEEeCCCCcccc---------ccccccccCCHHHHHHHHHhCCCChhhhHHhhhCCCCCCcchHHH
Q psy9351 88 DIVAVGVTNQRESTIAWDKITGEPLY---------NSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALK 158 (297)
Q Consensus 88 ~I~~Igis~~~~~~v~vd~~~g~~~~---------~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~~~tG~~~~~~~~~~k 158 (297)
+|+||||++. +|+|++|+ +|+|+. ++|.|.|.|+.+++++++... ..++...|..++|.+..+|
T Consensus 73 ~V~gIGvDaT-cSlvv~d~-~g~pl~v~~~~~~~~~vilWmDHrA~~EAe~in~~~-----~~~L~~~GG~~SpEm~~PK 145 (544)
T COG1069 73 DVVGIGVDAT-CSLVVIDR-DGNPLAVLPEFPNNPNVILWMDHRAVEEAEEINATC-----HPVLDYYGGKISPEMMIPK 145 (544)
T ss_pred HeeEEEEcce-eeeEEECC-CCCeeccCCCCCCCCceEEeccchHHHHHHHHHhhc-----hHHHHhhCCccChhhhHHH
Confidence 9999999999 99999999 699985 367999999999999999864 3488899999999999999
Q ss_pred HHHHHHhChhhHhhhhcCceeeeChhHHHHHHHcCCCCCCceEeeccccccccCccC-CCCCCcHHHhcccCCCC-----
Q psy9351 159 INWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNI-ETLEWDPMLCGFFTIPM----- 232 (297)
Q Consensus 159 l~wl~~~~p~~~~~~~~~~~~~~~~~dyi~~~LtG~~~~~~~~~d~s~a~~tgl~d~-~~~~w~~~~l~~~gi~~----- 232 (297)
|+|+++|.|++|++. .+|+.+.|||.|+|||+ ..-+.+.+...+.|.. +++.|++++++++|++.
T Consensus 146 lmwl~~~~p~~~~~a----~~~fdl~D~l~~~ltG~-----~~Rs~Ct~~~Kw~~~~~~~~~~~~~~f~~ig~~~l~~~~ 216 (544)
T COG1069 146 LMWLKREAPAVWERA----AHIFDLADWLTWKLTGS-----IARSRCTAGCKWNWLEHEGGLWSADFFDKIGLDDLRELD 216 (544)
T ss_pred HHHHHhhChHHHHHh----hhhhhHHHHHHHHhhcc-----hhhccccceeeeeeeccccCCCCHHHHHhcCchhhhccc
Confidence 999999999999998 79999999999999999 7777778877888988 66679999999999872
Q ss_pred CCCC-CcccCCcceeec------ccCCCCCCcEEEecchHHHHHHhcCCCCCCcEEEEeccccccccccc
Q psy9351 233 DILP-TICSSSEIYGHF------VSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295 (297)
Q Consensus 233 ~~LP-~l~~~g~~~G~i------~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~v~~~t~ 295 (297)
+.|| .+++.|+.+|++ ++||++|+.|.+|..|.+|+.+|+++-.|+.+...+|||++.+..+.
T Consensus 217 ~~l~~~i~~~g~~vg~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~~~~l~~I~GTStC~m~~s~ 286 (544)
T COG1069 217 SKLPEDIVPAGEPVGGLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQPGSLAMIAGTSTCHMLLSE 286 (544)
T ss_pred ccCCcccccCCccccccCHHHHHHhCCCCCcEEeccceeccccccccccCCCCeEEEEeccceEEEEecC
Confidence 3455 788999999999 68999999999999999999999998889999999999987766543
No 22
>KOG2531|consensus
Probab=99.96 E-value=4.9e-28 Score=223.13 Aligned_cols=263 Identities=21% Similarity=0.297 Sum_probs=221.8
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCC----C-------CeeEeCHH-HHHHHHHHHHHhhhhHHHHHH
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPT----E-------GWVEQDPM-EILAVVNGTIEACQFSACVEK 78 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~----~-------g~~e~d~~-~~~~~i~~~i~~~~~~~~~~~ 78 (297)
.+||+|++|+.+|++++|. +.+++....+.+....|+ + |..-..|- .|++++-- ++++
T Consensus 10 ~fLG~DlSTQqlKaviids-~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDl---------ll~k 79 (545)
T KOG2531|consen 10 SFLGFDLSTQQLKAVIIDS-NLNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDL---------LLDK 79 (545)
T ss_pred eeeeeecccceeEEEEEcC-CccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHH---------HHHH
Confidence 5899999999999999997 999999887766544332 1 13334565 44444333 4445
Q ss_pred HHHcCCCCCCeeEEEEcCccceEEEEeCCCCc-ccc-------------------ccccccccCCHHHHHHHHHhCCCCh
Q psy9351 79 LKEQGIEPTDIVAVGVTNQRESTIAWDKITGE-PLY-------------------NSIVWLDARTTSTLEKILEVVPNKN 138 (297)
Q Consensus 79 l~~~~~~~~~I~~Igis~~~~~~v~vd~~~g~-~~~-------------------~~i~w~D~R~~~~~~~l~~~~~~~~ 138 (297)
+++++.+..+|.+|+=++|.|+.|.|.+- ++ .+. ..=.|+|..++.+|+++...+++
T Consensus 80 l~~~~~d~~kV~aiSGagQQHGsVyWs~g-a~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~VGG-- 156 (545)
T KOG2531|consen 80 LREAGFDLSKVMAISGAGQQHGSVYWSKG-AENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAVGG-- 156 (545)
T ss_pred HHHcCCCHHHhhhhcccccccceeeehhh-hHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHhcc--
Confidence 78889988999999999999999999862 22 121 11269999999999999999987
Q ss_pred hhhHHhhhCCCCCCcchHHHHHHHHHhChhhHhhhhcCceeeeChhHHHHHHHcCCCCCCceEeeccccccccCccCCCC
Q psy9351 139 KNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETL 218 (297)
Q Consensus 139 ~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~~~~dyi~~~LtG~~~~~~~~~d~s~a~~tgl~d~~~~ 218 (297)
+.++.+.||...+..|+.+++..+.+.+||.|+++ -++-.+++|++.+|-|.. ..+|+|++|++.|+|++++
T Consensus 157 ~~~la~LTGSRAy~RFTGpQIrKi~~~~pe~Ye~T----erISLVSsFlaSlllG~~----a~id~sDgsGMNL~dIr~k 228 (545)
T KOG2531|consen 157 AQELAKLTGSRAYERFTGPQIRKIYQQEPEAYEKT----ERISLVSSFLASLLLGSY----APIDESDGSGMNLLDIRKK 228 (545)
T ss_pred HHHHHHhhcchhhhhcccHHHHHHHHhChHhhhcc----ceeehHHHHHHHHHhccc----cceecccccCchHHHHhhh
Confidence 67899999999999999999999999999999998 589999999999999983 6799999999999999999
Q ss_pred CCcHHHhcccCCC-CCCCCCcccCCcceeec------ccCCCCCCcEEEecchHHHHHHhcCCCCCCcEEEEeccccccc
Q psy9351 219 EWDPMLCGFFTIP-MDILPTICSSSEIYGHF------VSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLL 291 (297)
Q Consensus 219 ~w~~~~l~~~gi~-~~~LP~l~~~g~~~G~i------~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~v~ 291 (297)
+|+.++|+++--+ +++|...+++..+.|+| |.|+++++.|++-.||++++..|.- ++++++.+|+|||..+.
T Consensus 229 ~ws~~~L~~~apdL~~KL~~pv~~~~~~G~I~~Yfv~r~gF~p~C~Vv~~tGDNpsslagL~-l~~~dl~iSLGTSdTv~ 307 (545)
T KOG2531|consen 229 KWSKALLDACAPDLEEKLGKPVPPMSIAGTISKYFVKRYGFPPDCKVVPSTGDNPSSLAGLP-LRPGDLLISLGTSDTVF 307 (545)
T ss_pred hhhHHHHhhhChhHHHHhCCCCCccccccchhhhhHhhcCCCCCCEEEecCCCChHHhhCcc-ccCCceEEEecCcceEE
Confidence 9999999998655 45677888898999999 7899999999999999999999997 58899999999999888
Q ss_pred cccc
Q psy9351 292 YNTG 295 (297)
Q Consensus 292 ~~t~ 295 (297)
+.|.
T Consensus 308 m~t~ 311 (545)
T KOG2531|consen 308 MVTK 311 (545)
T ss_pred EEcC
Confidence 8764
No 23
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.60 E-value=9.3e-08 Score=85.38 Aligned_cols=70 Identities=20% Similarity=0.367 Sum_probs=56.5
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCee
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIV 90 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~ 90 (297)
+++|||+|||++|++++| +|++++..+. +++.+|+.+.++++ + + +++.+.++.+|.
T Consensus 1 ~~lGIDiGtts~K~vl~d--~g~il~~~~~--------------~~~~~~~~~~~~l~----~-~---~~~~~~~~~~i~ 56 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME--DGKVIGYKWL--------------DTTPVIEETARAIL----E-A---LKEAGIGLEPID 56 (248)
T ss_pred CEEEEEcChhheEEEEEc--CCEEEEEEEe--------------cCCCCHHHHHHHHH----H-H---HHHcCCChhhee
Confidence 479999999999999999 5888886654 34446778888888 6 5 455677778999
Q ss_pred EEEEcCccceEEEE
Q psy9351 91 AVGVTNQRESTIAW 104 (297)
Q Consensus 91 ~Igis~~~~~~v~v 104 (297)
+|+++++++++++.
T Consensus 57 ~i~~Tg~~~~~v~~ 70 (248)
T TIGR00241 57 KIVATGYGRHKVGF 70 (248)
T ss_pred EEEEECCCcccccc
Confidence 99999999998863
No 24
>PRK09698 D-allose kinase; Provisional
Probab=98.42 E-value=2.4e-06 Score=78.30 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=64.1
Q ss_pred cCCEEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCC
Q psy9351 8 YGPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPT 87 (297)
Q Consensus 8 ~~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~ 87 (297)
|..+++|||+|.|++|++++|. +|+++.+.+.+++. ..+++. .+.+.+.++ + + +++.+ .
T Consensus 2 ~~~~~lgidig~t~i~~~l~d~-~g~i~~~~~~~~~~--------~~~~~~-~~~l~~~i~----~-~---~~~~~---~ 60 (302)
T PRK09698 2 QKNVVLGIDMGGTHIRFCLVDA-EGEILHCEKKRTAE--------VIAPDL-VSGLGEMID----E-Y---LRRFN---A 60 (302)
T ss_pred CccEEEEEEcCCcEEEEEEEcC-CCCEEEEEEeCCcc--------ccchHH-HHHHHHHHH----H-H---HHHcC---C
Confidence 5678999999999999999998 99999887776641 123343 667777776 5 4 33322 5
Q ss_pred CeeEEEEcCccceEEEEeCCCCccc-ccccc---ccccC
Q psy9351 88 DIVAVGVTNQRESTIAWDKITGEPL-YNSIV---WLDAR 122 (297)
Q Consensus 88 ~I~~Igis~~~~~~v~vd~~~g~~~-~~~i~---w~D~R 122 (297)
++.+|||+.+| ++|.++|..+ .|.+. |.+..
T Consensus 61 ~i~gigia~pG----~vd~~~g~i~~~~~~~~~~~~~~~ 95 (302)
T PRK09698 61 RCHGIVMGFPA----LVSKDRRTVISTPNLPLTALDLYD 95 (302)
T ss_pred CeeEEEEeCCc----ceeCCCCEEEecCCCCccccccCC
Confidence 79999999998 7887555544 34554 55543
No 25
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=98.32 E-value=4.2e-06 Score=77.12 Aligned_cols=87 Identities=16% Similarity=0.338 Sum_probs=67.0
Q ss_pred EEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeEE
Q psy9351 13 GAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVAV 92 (297)
Q Consensus 13 lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~I 92 (297)
||||+|+|++|++++|. +|+++...+.+.+ .+++++++.+.+.++ + + +++.+....++.+|
T Consensus 1 lgidig~t~~~~~l~d~-~g~i~~~~~~~~~----------~~~~~~~~~l~~~i~----~-~---~~~~~~~~~~i~gI 61 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDE-EGNILSKWKVPTD----------TTPETIVDAIASAVD----S-F---IQHIAKVGHEIVAI 61 (318)
T ss_pred CEEEeCCCEEEEEEECC-CCCEEEEEEeCCC----------CCHHHHHHHHHHHHH----H-H---HHhcCCCccceEEE
Confidence 58999999999999998 8999987666543 257788888888888 6 5 44555566789999
Q ss_pred EEcCccceEEEEeCCCCccc-cccccccccC
Q psy9351 93 GVTNQRESTIAWDKITGEPL-YNSIVWLDAR 122 (297)
Q Consensus 93 gis~~~~~~v~vd~~~g~~~-~~~i~w~D~R 122 (297)
||+.+| ++|.++|... .|...|.+..
T Consensus 62 gva~pG----~vd~~~g~~~~~~~~~w~~~~ 88 (318)
T TIGR00744 62 GIGAPG----PVNRQRGTVYFAVNLDWKQEP 88 (318)
T ss_pred EEeccc----cccCCCCEEEecCCCCCCCCC
Confidence 999988 7887557644 3455687754
No 26
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=98.26 E-value=7.8e-06 Score=73.25 Aligned_cols=85 Identities=12% Similarity=0.086 Sum_probs=61.1
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeE
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVA 91 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~ 91 (297)
++|||||+|++|++++|. +|+++.+.+.+++ ..+++++++.+.++++ + + .. ....+.+
T Consensus 2 ~lgidiggt~i~~~l~d~-~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~----~-~----~~---~~~~~~g 59 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDE-NLQRIWHKRVPTP---------REDYPQLLQILRDLTE----E-A----DT---YCGVQGS 59 (256)
T ss_pred EEEEEECCCcEEEEEECC-CCCEEEEEEecCC---------CcCHHHHHHHHHHHHH----H-H----Hh---hcCCCce
Confidence 699999999999999997 9999988777664 1356777877777776 4 2 11 1233568
Q ss_pred EEEcCccceEEEEeCCCCccccccc-cccccC
Q psy9351 92 VGVTNQRESTIAWDKITGEPLYNSI-VWLDAR 122 (297)
Q Consensus 92 Igis~~~~~~v~vd~~~g~~~~~~i-~w~D~R 122 (297)
|||+.+| ++|.++|....+.+ .|.+..
T Consensus 60 Igv~~pG----~vd~~~g~i~~~~~~~w~~~~ 87 (256)
T PRK13311 60 VGIGIPG----LPNADDGTVFTANVPSAMGQP 87 (256)
T ss_pred EEEEecC----cEECCCCEEEccCCCcccCCC
Confidence 9999988 78975566554444 476543
No 27
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=98.24 E-value=7.6e-06 Score=68.93 Aligned_cols=85 Identities=21% Similarity=0.337 Sum_probs=65.9
Q ss_pred EEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeEEE
Q psy9351 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVAVG 93 (297)
Q Consensus 14 gIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~Ig 93 (297)
|||||+++++++++|. +|+++.+.+.+++ .+++++.+.+.+.++ + + +++.+ .. +||
T Consensus 1 gidig~~~i~~~l~d~-~g~ii~~~~~~~~----------~~~~~~~~~l~~~i~----~-~---~~~~~----~~-gIg 56 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDL-DGEIIYSESIPTP----------TSPEELLDALAELIE----R-L---LADYG----RS-GIG 56 (179)
T ss_dssp EEEEESSEEEEEEEET-TSCEEEEEEEEHH----------SSHHHHHHHHHHHHH----H-H---HHHHT----CE-EEE
T ss_pred CEEECCCEEEEEEECC-CCCEEEEEEEECC----------CCHHHHHHHHHHHHH----H-H---Hhhcc----cc-cEE
Confidence 7999999999999998 9999998888874 468889999999888 6 4 23322 12 999
Q ss_pred EcCccceEEEEeCCCCccc-cccccccccCCHHH
Q psy9351 94 VTNQRESTIAWDKITGEPL-YNSIVWLDARTTST 126 (297)
Q Consensus 94 is~~~~~~v~vd~~~g~~~-~~~i~w~D~R~~~~ 126 (297)
|+.++ ++|.++|.++ .|...|.+..-.+.
T Consensus 57 i~~pG----~v~~~~g~i~~~~~~~~~~~~l~~~ 86 (179)
T PF00480_consen 57 ISVPG----IVDSEKGRIISSPNPGWENIPLKEE 86 (179)
T ss_dssp EEESS----EEETTTTEEEECSSGTGTTCEHHHH
T ss_pred Eeccc----cCcCCCCeEEecCCCCcccCCHHHH
Confidence 99998 8899655555 45667998764443
No 28
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=98.19 E-value=1.7e-05 Score=72.99 Aligned_cols=90 Identities=16% Similarity=0.230 Sum_probs=62.2
Q ss_pred cCCEEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCC
Q psy9351 8 YGPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPT 87 (297)
Q Consensus 8 ~~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~ 87 (297)
++.+++|||||+|++|++++|. +|+++...+.+++.. .+.+++.+.+.+.++ + + +++.+ ...
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~-~g~~l~~~~~~~~~~--------~~~~~~~~~i~~~i~----~-~---~~~~~-~~~ 65 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDL-DGEILLRERIPTPTP--------DPEEAILEAILALVA----E-L---LKQAQ-GRV 65 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECC-CCcEEEEEEEecCCC--------CchhHHHHHHHHHHH----H-H---HHhcC-CcC
Confidence 3458999999999999999998 999999988888731 223467777777777 5 4 33333 345
Q ss_pred CeeEEEEcCccceEEEEeCCCC-ccccccccccc
Q psy9351 88 DIVAVGVTNQRESTIAWDKITG-EPLYNSIVWLD 120 (297)
Q Consensus 88 ~I~~Igis~~~~~~v~vd~~~g-~~~~~~i~w~D 120 (297)
++.+||+++++ .+|+. . ....|.+.|.+
T Consensus 66 ~~iGIgi~~pg----~~~~~-~~~~~~~~~~~~~ 94 (314)
T COG1940 66 AIIGIGIPGPG----DVDNG-TVIVPAPNLGWWN 94 (314)
T ss_pred ceEEEEeccce----eccCC-cEEeecCCCCccc
Confidence 57777777766 66662 3 22345555554
No 29
>PRK09557 fructokinase; Reviewed
Probab=98.14 E-value=1.6e-05 Score=72.76 Aligned_cols=83 Identities=16% Similarity=0.224 Sum_probs=61.1
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCee
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIV 90 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~ 90 (297)
++||||+|+|++|++++|. +|+++.+.+.+++ ..+++++.+.+.+.++ + + +++ ...+.
T Consensus 1 ~~lgidig~t~~~~~l~d~-~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~----~-~---~~~----~~~~~ 58 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDD-AGEELFRKRLPTP---------RDDYQQTIEAIATLVD----M-A---EQA----TGQRG 58 (301)
T ss_pred CEEEEEECCCcEEEEEECC-CCCEEEEEEecCC---------CCCHHHHHHHHHHHHH----H-H---Hhh----cCCce
Confidence 3699999999999999997 8999988776664 1356777887877777 5 3 222 23568
Q ss_pred EEEEcCccceEEEEeCCCCcccccccccc
Q psy9351 91 AVGVTNQRESTIAWDKITGEPLYNSIVWL 119 (297)
Q Consensus 91 ~Igis~~~~~~v~vd~~~g~~~~~~i~w~ 119 (297)
+||++.+| ++|+++|....+...|.
T Consensus 59 gIgi~~pG----~vd~~~g~i~~~~~~~~ 83 (301)
T PRK09557 59 TVGVGIPG----SISPYTGLVKNANSTWL 83 (301)
T ss_pred EEEecCcc----cCcCCCCeEEecCCccc
Confidence 99999988 78875676554444563
No 30
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=98.13 E-value=1.6e-05 Score=72.85 Aligned_cols=87 Identities=11% Similarity=0.004 Sum_probs=62.9
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeE
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVA 91 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~ 91 (297)
++|||||.|++|++++|. +|+++.+.+.+++ ..+++++.+.+.+.++ + + .++ ...+.+
T Consensus 2 ~lgidig~t~i~~~l~d~-~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~----~-~---~~~----~~~~~~ 59 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNE-KLELQWEERVPTP---------RDSYDAFLDAVCELVA----E-A---DQR----FGCKGS 59 (303)
T ss_pred eEEEEeCCCcEEEEEECC-CCcEEEEEEecCC---------CcCHHHHHHHHHHHHH----H-H---Hhh----cCCcce
Confidence 699999999999999998 8999987776653 1357888888888887 5 3 121 223458
Q ss_pred EEEcCccceEEEEeCCCCcccccccc-ccccCCH
Q psy9351 92 VGVTNQRESTIAWDKITGEPLYNSIV-WLDARTT 124 (297)
Q Consensus 92 Igis~~~~~~v~vd~~~g~~~~~~i~-w~D~R~~ 124 (297)
|||+.+| ++|.++|....+.+. |.+..-.
T Consensus 60 igia~pG----~vd~~~g~~~~~~~~~w~~~~l~ 89 (303)
T PRK13310 60 VGIGIPG----MPETEDGTLYAANVPAASGKPLR 89 (303)
T ss_pred EEEeCCC----cccCCCCEEeccCcccccCCcHH
Confidence 9999988 788756765554453 7665433
No 31
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=97.77 E-value=8.8e-05 Score=56.16 Aligned_cols=59 Identities=17% Similarity=0.099 Sum_probs=41.8
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeE
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVA 91 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~ 91 (297)
+||||+|+|.+|++++|. +|+++...+.+.. .+.+.+++.+.+.++ + .++.+
T Consensus 3 ilgiD~Ggt~i~~a~~d~-~g~~~~~~~~~~~----------~~~~~~~~~l~~~i~----~-------------~~~~~ 54 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDE-TGKLADPLEVIPR----------TNKEADAARLKKLIK----K-------------YQPDL 54 (99)
T ss_pred EEEEccCCCeEEEEEECC-CCCEecCEEEEEe----------cCcchHHHHHHHHHH----H-------------hCCCE
Confidence 799999999999999997 8999876665542 123344544444443 2 24678
Q ss_pred EEEcCcc
Q psy9351 92 VGVTNQR 98 (297)
Q Consensus 92 Igis~~~ 98 (297)
|||+.++
T Consensus 55 i~Ig~pg 61 (99)
T smart00732 55 IVIGLPL 61 (99)
T ss_pred EEEeCCc
Confidence 8999877
No 32
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=97.76 E-value=0.00015 Score=65.98 Aligned_cols=87 Identities=16% Similarity=0.152 Sum_probs=59.8
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeE
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVA 91 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~ 91 (297)
++|||||.++++++++|. +|+++...+.+++. ..+++++.+.+.+.++ + + . .++.+
T Consensus 3 ~lgvdig~~~i~~~l~dl-~g~i~~~~~~~~~~--------~~~~~~~~~~i~~~i~----~-~----~------~~~~~ 58 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGE-DGQIRQRRQIPTPA--------SQTPEALRQALSALVS----P-L----Q------AQADR 58 (291)
T ss_pred EEEEEECCCEEEEEEEcC-CCcEEEEEEecCCC--------CCCHHHHHHHHHHHHH----H-h----h------hcCcE
Confidence 699999999999999998 89999877776641 1356677777777776 4 2 1 24678
Q ss_pred EEEcCccceEEEEeCCCCccccc-cc-cccccCCHHH
Q psy9351 92 VGVTNQRESTIAWDKITGEPLYN-SI-VWLDARTTST 126 (297)
Q Consensus 92 Igis~~~~~~v~vd~~~g~~~~~-~i-~w~D~R~~~~ 126 (297)
|||+.+| ++|........+ .+ .|.+..-.+.
T Consensus 59 igi~~pG----~vd~~~~~~~~~~~~~~w~~~~l~~~ 91 (291)
T PRK05082 59 VAVASTG----IINDGILTALNPHNLGGLLHFPLVQT 91 (291)
T ss_pred EEEeCcc----cccCCeeEEecCCCCccccCCChHHH
Confidence 9999988 677522222222 23 5877665443
No 33
>PRK00292 glk glucokinase; Provisional
Probab=97.61 E-value=0.00024 Score=65.58 Aligned_cols=80 Identities=13% Similarity=0.125 Sum_probs=51.1
Q ss_pred CEEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCe
Q psy9351 10 PLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDI 89 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I 89 (297)
+++|+||||+|++|++++|.++++++...+.+++. ++.+.+.+. + + +++. ...++
T Consensus 2 ~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~----~-~---l~~~--~~~~~ 56 (316)
T PRK00292 2 KPALVGDIGGTNARFALCDWANGEIEQIKTYATAD---------------YPSLEDAIR----A-Y---LADE--HGVQV 56 (316)
T ss_pred ceEEEEEcCccceEEEEEecCCCceeeeEEEecCC---------------CCCHHHHHH----H-H---HHhc--cCCCC
Confidence 47899999999999999995245566666555430 112444554 4 3 2221 12368
Q ss_pred eEEEEcCccceEEEEeCCCCccccccccccc
Q psy9351 90 VAVGVTNQRESTIAWDKITGEPLYNSIVWLD 120 (297)
Q Consensus 90 ~~Igis~~~~~~v~vd~~~g~~~~~~i~w~D 120 (297)
.+|||+.+| ++|.+ +...+.+.|.+
T Consensus 57 ~gigIg~pG----~vd~~--~i~~~n~~w~~ 81 (316)
T PRK00292 57 RSACFAIAG----PVDGD--EVRMTNHHWAF 81 (316)
T ss_pred ceEEEEEeC----cccCC--EEEecCCCccc
Confidence 899999988 88873 33344456865
No 34
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.51 E-value=0.00053 Score=62.33 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=47.8
Q ss_pred CEEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCe
Q psy9351 10 PLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDI 89 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I 89 (297)
.+++|||+|+|++|++++|. ++++.....++. .++.+ ...++++ + + +++.|....++
T Consensus 32 m~~~GIDiGStt~K~Vlld~--~~i~~~~~~~tg----------~~~~~---~a~~~l~----~-~---l~~~g~~~~~v 88 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVCD--GELYGYNSMRTG----------NNSPD---SAKNALQ----G-I---MDKIGMKLEDI 88 (293)
T ss_pred cEEEEEEeCchhEEEEEEeC--CEEEEEEeecCC----------CCHHH---HHHHHHH----H-H---HHHcCCcccce
Confidence 38899999999999999993 577765555443 23333 3445555 4 4 34566666789
Q ss_pred eEEEEcCccceEE
Q psy9351 90 VAVGVTNQRESTI 102 (297)
Q Consensus 90 ~~Igis~~~~~~v 102 (297)
..++.++.|...+
T Consensus 89 ~~~~~TGyGr~~~ 101 (293)
T TIGR03192 89 NYVVGTGYGRVNV 101 (293)
T ss_pred EEEEEECcchhhc
Confidence 9898888775443
No 35
>PRK12408 glucokinase; Provisional
Probab=97.46 E-value=0.00023 Score=66.46 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=48.0
Q ss_pred EEEEEecCCCcceEEEEeCCCCe------EEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCC
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGK------LVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGI 84 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~------v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~ 84 (297)
.+|++|||+|++|.+++|. +++ ++...+.+++ + ++.+.+.++ + + +++
T Consensus 17 ~~L~~DIGGT~i~~al~d~-~g~~~~~~~~~~~~~~~t~-----------~----~~~~~~~i~----~-~---~~~--- 69 (336)
T PRK12408 17 SFVAADVGGTHVRVALVCA-SPDAAKPVELLDYRTYRCA-----------D----YPSLAAILA----D-F---LAE--- 69 (336)
T ss_pred cEEEEEcChhhhheeEEec-cCCccccccccceeEecCC-----------C----ccCHHHHHH----H-H---Hhc---
Confidence 4799999999999999996 676 3333333322 1 122344455 4 3 222
Q ss_pred CCCCeeEEEEcCccceEEEEeCCCCccccccccccc
Q psy9351 85 EPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLD 120 (297)
Q Consensus 85 ~~~~I~~Igis~~~~~~v~vd~~~g~~~~~~i~w~D 120 (297)
..++.+|||+.+|. . ++ +|....+.+.|..
T Consensus 70 -~~~~~~igIg~pG~-~--~~--~g~v~~~nl~w~~ 99 (336)
T PRK12408 70 -CAPVRRGVIASAGY-A--LD--DGRVITANLPWTL 99 (336)
T ss_pred -CCCcCEEEEEecCC-c--eE--CCEEEecCCCCcc
Confidence 23588999999883 1 33 4766655667854
No 36
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.43 E-value=0.00065 Score=64.21 Aligned_cols=72 Identities=21% Similarity=0.351 Sum_probs=51.5
Q ss_pred cCCEEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCC
Q psy9351 8 YGPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPT 87 (297)
Q Consensus 8 ~~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~ 87 (297)
...+++|||+|+|++|++++| +++++.....++. ++ .+.+.++++ + + +++.|+...
T Consensus 142 ~~g~~lGIDiGSTttK~Vl~d--d~~Ii~~~~~~t~-----------~~---~~~a~~~l~----~-~---l~~~Gl~~~ 197 (404)
T TIGR03286 142 QEGLTLGIDSGSTTTKAVVME--DNEVIGTGWVPTT-----------KV---IESAEEAVE----R-A---LEEAGVSLE 197 (404)
T ss_pred cCCEEEEEEcChhheeeEEEc--CCeEEEEEEeecc-----------cH---HHHHHHHHH----H-H---HHHcCCCcc
Confidence 345899999999999999998 4688876544431 11 233455555 4 4 456777788
Q ss_pred CeeEEEEcCccceEEE
Q psy9351 88 DIVAVGVTNQRESTIA 103 (297)
Q Consensus 88 ~I~~Igis~~~~~~v~ 103 (297)
+|.+|++++.|...+.
T Consensus 198 di~~i~~TGyGR~~i~ 213 (404)
T TIGR03286 198 DVEAIGTTGYGRFTIG 213 (404)
T ss_pred ceeEEEeeeecHHHHh
Confidence 9999999998876653
No 37
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=97.42 E-value=0.00065 Score=64.79 Aligned_cols=83 Identities=22% Similarity=0.248 Sum_probs=51.5
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCC------eeEe-C-HHHHHHHHHHHHHhhhhHHHHHHHHHc
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEG------WVEQ-D-PMEILAVVNGTIEACQFSACVEKLKEQ 82 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g------~~e~-d-~~~~~~~i~~~i~~~~~~~~~~~l~~~ 82 (297)
|-++||||||++.+.++|.++|++++..+..+|......+ ++.. + .+++-+.+.+.+. +++-+.++++
T Consensus 2 ~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~----~li~~l~~~~ 77 (412)
T PF14574_consen 2 YGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETIN----ELIEELLEKA 77 (412)
T ss_dssp EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred EEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHH----HHHHHHHHHc
Confidence 6799999999999999998889999999999986532211 2221 1 2444445555555 4122224567
Q ss_pred CCCCCCeeEEEEcCc
Q psy9351 83 GIEPTDIVAVGVTNQ 97 (297)
Q Consensus 83 ~~~~~~I~~Igis~~ 97 (297)
++++++|..+.+++.
T Consensus 78 gi~~~~I~~i~i~GN 92 (412)
T PF14574_consen 78 GISPEDIYEIVIVGN 92 (412)
T ss_dssp T--GGGEEEEEEEE-
T ss_pred CCCHHHeEEEEEEec
Confidence 899999999988873
No 38
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.34 E-value=0.001 Score=59.66 Aligned_cols=72 Identities=21% Similarity=0.374 Sum_probs=45.6
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEE-EEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCe
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLV-AKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDI 89 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~-~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I 89 (297)
+++|||+|+|++|++++|. +++.+ ......++.. ..+| .+...++++ + + +++.+++..+|
T Consensus 2 ~~~GIDiGStttK~Vlid~-~~~~~~~~~~~~~~~~-------~~~~---~~~~~~~l~----~-~---~~~~g~~~~~i 62 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEV-DGDKEECLAKRNDRIR-------QRDP---FKLAEDAYD----D-L---LEEAGLAAADV 62 (262)
T ss_pred eEEEEEcCcccEEEEEEec-CCCeeEEEEEEEecCC-------CCCH---HHHHHHHHH----H-H---HHHcCCChhhe
Confidence 6899999999999999995 45422 2222222210 1233 223445555 5 4 45567777899
Q ss_pred eEEEEcCccceE
Q psy9351 90 VAVGVTNQREST 101 (297)
Q Consensus 90 ~~Igis~~~~~~ 101 (297)
..++.++.|...
T Consensus 63 ~~i~~TGYGR~~ 74 (262)
T TIGR02261 63 AYCATTGEGESL 74 (262)
T ss_pred EEEEEECCchhh
Confidence 999999987544
No 39
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.27 E-value=0.00079 Score=60.67 Aligned_cols=67 Identities=19% Similarity=0.337 Sum_probs=46.4
Q ss_pred EEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeEE
Q psy9351 13 GAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVAV 92 (297)
Q Consensus 13 lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~I 92 (297)
||||.|+|++|++++|. +|+++.+....-... ...+.++..+.+.++++ + + +++.+..+.+|..+
T Consensus 1 lGIDgGgTkt~~vl~d~-~g~il~~~~~~~~n~------~~~~~~~~~~~i~~~i~----~-~---~~~~~~~~~~i~~~ 65 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDE-NGNILGRGKGGGANY------NSVGFEEAMENIKEAIE----E-A---LSQAGLSPDDIAAI 65 (271)
T ss_dssp EEEEECSSEEEEEEEET-TSEEEEEEEES-TTH------HHHHHHHHHHHHHHHHH----H-H---HHHHTTSTTCCCEE
T ss_pred CEEeeChheeeeEEEeC-CCCEEEEEEeCCCCC------CCCCcchhhhHHHHHHH----H-H---HHHcCCCcccccee
Confidence 79999999999999997 999887654322111 11345777788888888 6 5 45566666666655
Q ss_pred EE
Q psy9351 93 GV 94 (297)
Q Consensus 93 gi 94 (297)
++
T Consensus 66 ~~ 67 (271)
T PF01869_consen 66 CI 67 (271)
T ss_dssp EE
T ss_pred ee
Confidence 33
No 40
>PRK13321 pantothenate kinase; Reviewed
Probab=97.23 E-value=0.0012 Score=59.21 Aligned_cols=63 Identities=21% Similarity=0.361 Sum_probs=45.3
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeE
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVA 91 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~ 91 (297)
+|+||||.|++|.++||. + +++...+.+++ ...+++++...+.+.++ + .+..+++|.+
T Consensus 2 iL~IDIGnT~ik~gl~~~-~-~i~~~~~~~T~--------~~~~~~~~~~~l~~l~~----~--------~~~~~~~i~~ 59 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDG-D-RLLRSFRLPTD--------KSRTSDELGILLLSLFR----H--------AGLDPEDIRA 59 (256)
T ss_pred EEEEEECCCeEEEEEEEC-C-EEEEEEEEecC--------CCCCHHHHHHHHHHHHH----H--------cCCChhhCCe
Confidence 589999999999999994 4 77776666664 12345666666666555 3 3344567999
Q ss_pred EEEcC
Q psy9351 92 VGVTN 96 (297)
Q Consensus 92 Igis~ 96 (297)
|++++
T Consensus 60 i~vss 64 (256)
T PRK13321 60 VVISS 64 (256)
T ss_pred EEEEe
Confidence 99987
No 41
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=97.20 E-value=0.0011 Score=60.04 Aligned_cols=69 Identities=19% Similarity=0.355 Sum_probs=50.2
Q ss_pred ccCCEEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCH-HHHHHHHHHHHHhhhhHHHHHHHHHcCCC
Q psy9351 7 QYGPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDP-MEILAVVNGTIEACQFSACVEKLKEQGIE 85 (297)
Q Consensus 7 ~~~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~-~~~~~~i~~~i~~~~~~~~~~~l~~~~~~ 85 (297)
++++|+||||-|+|++|+++.|. +|+++......-.. ...++ +.-++.+.++++ + + +.++|.+
T Consensus 2 ~~~~~~lGVDGGGTkt~a~l~~~-~g~vlg~g~sGpAN-------~~~~~~e~A~~ni~~ai~----~-A---~~~aG~~ 65 (301)
T COG2971 2 EPMPYFLGVDGGGTKTRAVLADE-DGNVLGRGKSGPAN-------IQLVGKEEAVRNIKDAIR----E-A---LDEAGLK 65 (301)
T ss_pred CCccEEEEEccCCcceEEEEEcC-CCcEEEEeccCCce-------ecccchHHHHHHHHHHHH----H-H---HHhcCCC
Confidence 35679999999999999999996 89999875432211 11344 778888999998 6 5 4456766
Q ss_pred CCCeeE
Q psy9351 86 PTDIVA 91 (297)
Q Consensus 86 ~~~I~~ 91 (297)
+++|..
T Consensus 66 ~~~i~~ 71 (301)
T COG2971 66 PDEIAA 71 (301)
T ss_pred HHHhCc
Confidence 665544
No 42
>PRK13318 pantothenate kinase; Reviewed
Probab=97.14 E-value=0.002 Score=57.87 Aligned_cols=63 Identities=27% Similarity=0.403 Sum_probs=43.1
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeE
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVA 91 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~ 91 (297)
+|+||||.|++|.+++| +++++...+.+++. ...++++...+.+.++ ..+....++.+
T Consensus 2 iL~IDIGnT~iK~al~d--~g~i~~~~~~~t~~--------~~~~~~~~~~l~~l~~------------~~~~~~~~i~~ 59 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE--GGKLVAHWRISTDS--------RRTADEYGVWLKQLLG------------LSGLDPEDITG 59 (258)
T ss_pred EEEEEECCCcEEEEEEE--CCEEEEEEEEeCCC--------CCCHHHHHHHHHHHHH------------HcCCCcccCce
Confidence 58999999999999999 48888877776642 1234554444433332 23444467899
Q ss_pred EEEcC
Q psy9351 92 VGVTN 96 (297)
Q Consensus 92 Igis~ 96 (297)
|++++
T Consensus 60 I~iss 64 (258)
T PRK13318 60 IIISS 64 (258)
T ss_pred EEEEE
Confidence 99997
No 43
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=97.01 E-value=0.00092 Score=67.70 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=52.5
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCee
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIV 90 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~ 90 (297)
.+|++|||+|++|++++|. +|+++...+.+++. ++.+.+.++ + + +++.+ ..++.
T Consensus 19 ~~L~iDIGGT~ir~al~~~-~g~i~~~~~~~t~~---------------~~~~~~~i~----~-~---l~~~~--~~~~~ 72 (638)
T PRK14101 19 PRLLADVGGTNARFALETG-PGEITQIRVYPGAD---------------YPTLTDAIR----K-Y---LKDVK--IGRVN 72 (638)
T ss_pred CEEEEEcCchhheeeeecC-CCcccceeEEecCC---------------CCCHHHHHH----H-H---HHhcC--CCCcc
Confidence 4799999999999999996 89988776666631 123445555 4 3 22232 23689
Q ss_pred EEEEcCccceEEEEeCCCCcccccccccc
Q psy9351 91 AVGVTNQRESTIAWDKITGEPLYNSIVWL 119 (297)
Q Consensus 91 ~Igis~~~~~~v~vd~~~g~~~~~~i~w~ 119 (297)
+|||+.+| +||. +. ...+.+.|.
T Consensus 73 ~igig~pG----pVd~-~~-~~~~nl~w~ 95 (638)
T PRK14101 73 HAAIAIAN----PVDG-DQ-VRMTNHDWS 95 (638)
T ss_pred eEEEEEec----CccC-Ce-eeecCCCcE
Confidence 99999998 8887 33 333455786
No 44
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.93 E-value=0.0038 Score=58.15 Aligned_cols=74 Identities=18% Similarity=0.327 Sum_probs=48.1
Q ss_pred cccCCEEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCC
Q psy9351 6 GQYGPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIE 85 (297)
Q Consensus 6 ~~~~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~ 85 (297)
++...++||||.|+|++|++|.+. +..+.......+. -.|. ..++++ + + +++.+.+
T Consensus 131 ~~~~~~~LGID~GSTtTK~VLm~d-~~~I~~~~~~~t~----------g~p~-----~~~~l~----~-~---le~l~~~ 186 (396)
T COG1924 131 EYQGMYTLGIDSGSTTTKAVLMED-GKEILYGFYVSTK----------GRPI-----AEKALK----E-A---LEELGEK 186 (396)
T ss_pred hhcCcEEEEEecCCcceeEEEEeC-CCeEEEEEEEcCC----------CChh-----HHHHHH----H-H---HHHcccC
Confidence 344568999999999999999994 5544443333332 1222 234444 4 3 3344555
Q ss_pred CCCeeEEEEcCccceEEE
Q psy9351 86 PTDIVAVGVTNQRESTIA 103 (297)
Q Consensus 86 ~~~I~~Igis~~~~~~v~ 103 (297)
..+|.++++++.|...+-
T Consensus 187 ~~~I~~~~~TGYGR~~v~ 204 (396)
T COG1924 187 LEEILGLGVTGYGRNLVG 204 (396)
T ss_pred hheeeeeeeecccHHHhh
Confidence 679999999999876553
No 45
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=96.84 E-value=0.003 Score=53.50 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=49.6
Q ss_pred EEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeEE
Q psy9351 13 GAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVAV 92 (297)
Q Consensus 13 lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~I 92 (297)
||||+|+|.+-++++|. +..+++..+.++. +++....+.++++ + + +.+.++++.+|..|
T Consensus 2 igIDvGGT~TD~v~~d~-~~~~~~~~K~~Tt------------~~d~~~gi~~al~----~-l---~~~~~~~~~~i~~v 60 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDE-DTGVVATAKVPTT------------PDDPAEGILEALD----A-L---LEESGIDPSDIDRV 60 (176)
T ss_pred eeEecCCCcEEEEEEeC-CCCEEEEEEeCCC------------CcCHHHHHHHHHH----h-h---hcccCCChhhCcEE
Confidence 79999999999999996 6578887777774 3445667777777 5 4 34456678889998
Q ss_pred EEcCcc
Q psy9351 93 GVTNQR 98 (297)
Q Consensus 93 gis~~~ 98 (297)
-+++..
T Consensus 61 ~~gTT~ 66 (176)
T PF05378_consen 61 RHGTTV 66 (176)
T ss_pred EeccHH
Confidence 888864
No 46
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=96.34 E-value=0.018 Score=50.05 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=44.6
Q ss_pred EEEEEecCCCcceEEEEeCCCCe-EEEE--EEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCC-CC
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGK-LVAK--HQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGI-EP 86 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~-v~~~--~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~-~~ 86 (297)
.+|+||+|+|++|++++.. .|. .... ...++|... .....+++++.|.+++. + + +++.+. +.
T Consensus 64 ~~LalDlGGTnlRv~~V~L-~g~~~~~~~~~~~~ip~~~-----~~~~~~~lFd~ia~~i~----~-f---~~~~~~~~~ 129 (206)
T PF00349_consen 64 DFLALDLGGTNLRVALVEL-SGNGKVEIEQEKYKIPEEL-----MNGSGEELFDFIADCIA----E-F---LKEHNLESR 129 (206)
T ss_dssp EEEEEEESSSSEEEEEEEE-ESSSEEEEEEEEEE--HHH-----HTSBHHHHHHHHHHHHH----H-H---HHHTTTTST
T ss_pred eEEEEeecCcEEEEEEEEE-cCCCCceeeeccccCChHH-----hcCCcccHHHHHHHHHH----H-H---HHHhccccc
Confidence 6799999999999999998 554 3332 233333211 11334889999999998 6 5 454443 23
Q ss_pred CCeeEEEEcC
Q psy9351 87 TDIVAVGVTN 96 (297)
Q Consensus 87 ~~I~~Igis~ 96 (297)
.+..-+|++.
T Consensus 130 ~~~l~lGfTF 139 (206)
T PF00349_consen 130 DEKLPLGFTF 139 (206)
T ss_dssp TSEEEEEEEE
T ss_pred ccccceEEEE
Confidence 4444455544
No 47
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.23 E-value=0.0097 Score=56.16 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=29.3
Q ss_pred CCEEEEEecCCCcceEEEEeCCCCeEEEEEEeeec
Q psy9351 9 GPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLG 43 (297)
Q Consensus 9 ~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~ 43 (297)
|+|++|||+|+|++|++|+|. +++++.....++.
T Consensus 1 m~y~lGIDIGSTsTKaVVmd~-~g~Il~~~i~pTG 34 (432)
T TIGR02259 1 MECFVGIDLGSTTTKAVLMDD-KGEVIGRGITNSR 34 (432)
T ss_pred CceEEEEEcCchhEEEEEEcC-CCcEEEEEecCCC
Confidence 348999999999999999996 7789888777774
No 48
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=95.63 E-value=0.12 Score=43.96 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=37.0
Q ss_pred EEEEecCCCcceEEEEeCC-CC--eEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHH
Q psy9351 12 VGAIDEGTSSCRFIVFSAL-TG--KLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIE 68 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~-~g--~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~ 68 (297)
++||||||+++|+++.... +| ++++....|..- -..| .-.|.+..-+++.++++
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~s~g--i~~G-~I~d~~~~~~~I~~ai~ 57 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVPSRG--IRKG-VIVDIEAAARAIREAVE 57 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCC--ccCc-EEECHHHHHHHHHHHHH
Confidence 4799999999999999742 34 455555443221 1334 34688888888888887
No 49
>PTZ00288 glucokinase 1; Provisional
Probab=95.58 E-value=0.11 Score=49.77 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=34.3
Q ss_pred cCCEEEEEecCCCcceEEEEeCC--CCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHH
Q psy9351 8 YGPLVGAIDEGTSSCRFIVFSAL--TGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIE 68 (297)
Q Consensus 8 ~~~~~lgIDiGtt~ik~~l~d~~--~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~ 68 (297)
..+|++++|||+|++|+++++.. ++..+.....+++.. ..|..+..+.+.+.++
T Consensus 24 ~~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 79 (405)
T PTZ00288 24 SGPIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNVT-------KTDIRELLEFFDEVLQ 79 (405)
T ss_pred cCCeEEEEEecCCceEEEEEeccCCCCCceeEEEEecccc-------cccHHHHHHHHHHHHH
Confidence 45689999999999999999851 122233333333310 1456666766666666
No 50
>KOG1794|consensus
Probab=95.47 E-value=0.077 Score=47.95 Aligned_cols=76 Identities=9% Similarity=0.243 Sum_probs=57.5
Q ss_pred cCCEEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCC
Q psy9351 8 YGPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPT 87 (297)
Q Consensus 8 ~~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~ 87 (297)
++.+|.|++=|.|+.|.+++|+ .++++....-.....+ ....+..-+.|.+.++ + + ..+++++++
T Consensus 1 ~~~~y~GvEGgaT~s~~Vivd~-~~~~~~~a~~~~Tnh~------~ig~~~~~~rie~~i~----~-A---~~k~g~d~~ 65 (336)
T KOG1794|consen 1 LKDFYGGVEGGATCSRLVIVDE-DGTILGRAVGGGTNHW------LIGSTTCASRIEDMIR----E-A---KEKAGWDKK 65 (336)
T ss_pred CCceeEeecCCcceeEEEEECC-CCCEeeEeeccccccc------cCCchHHHHHHHHHHH----H-H---HhhcCCCcc
Confidence 4568999999999999999997 9999987655443332 2335667778888888 6 5 457888887
Q ss_pred C-eeEEEEcCcc
Q psy9351 88 D-IVAVGVTNQR 98 (297)
Q Consensus 88 ~-I~~Igis~~~ 98 (297)
. ++++|++-.+
T Consensus 66 ~~lr~lgL~lSg 77 (336)
T KOG1794|consen 66 GPLRSLGLGLSG 77 (336)
T ss_pred Cccceeeeeccc
Confidence 7 8888877654
No 51
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=95.35 E-value=0.075 Score=49.92 Aligned_cols=71 Identities=18% Similarity=0.194 Sum_probs=42.6
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeE
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVA 91 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~ 91 (297)
+|+|..|+||+|+++|+. +++++.+....... .-+ +.+.+.+.+.-.++ . +.+.+++.++...+|.+
T Consensus 2 il~in~Gsts~k~alf~~-~~~~~~~~~~~~~~---~~~----~~~~~~~q~~~r~~----~-i~~~l~~~~~~~~~i~a 68 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFED-ERPLFEETLRHSVE---ELG----RFKNVIDQFEFRKQ----V-ILQFLEEHGISISKLDA 68 (351)
T ss_pred EEEEecCchhheEEEEeC-CCceeeeeecCCHH---Hhc----ccccHHHHHHHHHH----H-HHHHHHHcCCCcccccE
Confidence 689999999999999997 88877654443311 111 12233333331122 1 22336667776778998
Q ss_pred EEEc
Q psy9351 92 VGVT 95 (297)
Q Consensus 92 Igis 95 (297)
|+--
T Consensus 69 v~~R 72 (351)
T TIGR02707 69 VVGR 72 (351)
T ss_pred EEEC
Confidence 8444
No 52
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=95.10 E-value=0.26 Score=47.44 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=39.8
Q ss_pred CCEEEEEecCCCcceEEEEeC-CCC--eEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHH
Q psy9351 9 GPLVGAIDEGTSSCRFIVFSA-LTG--KLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIE 68 (297)
Q Consensus 9 ~~~~lgIDiGtt~ik~~l~d~-~~g--~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~ 68 (297)
.++++||||||+++|+++.+. .++ +++.....|..-. ..| .-.|.+...+++.++++
T Consensus 7 ~~~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~s~gi--~~G-~I~d~~~~~~aI~~av~ 66 (420)
T PRK09472 7 RKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSRGM--DKG-GVNDLESVVKCVQRAID 66 (420)
T ss_pred CCEEEEEEcccceEEEEEEEEcCCCCEEEEEEEEccCCCc--cCC-EEEcHHHHHHHHHHHHH
Confidence 358999999999999998763 144 4555555553211 234 44688998888888887
No 53
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=94.98 E-value=0.041 Score=50.76 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=20.0
Q ss_pred EEEecCCCcceEEEEeCCCCeEEEE
Q psy9351 13 GAIDEGTSSCRFIVFSALTGKLVAK 37 (297)
Q Consensus 13 lgIDiGtt~ik~~l~d~~~g~v~~~ 37 (297)
|++|||+|++|++++|. +++++..
T Consensus 1 l~~DIGGT~i~~glvd~-~g~~l~~ 24 (316)
T TIGR00749 1 LVGDIGGTNARLALCEI-APGEISQ 24 (316)
T ss_pred CeEecCcceeeEEEEec-CCCceee
Confidence 57999999999999996 7766544
No 54
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=94.48 E-value=0.29 Score=44.16 Aligned_cols=57 Identities=21% Similarity=0.206 Sum_probs=39.7
Q ss_pred cCCEEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHH
Q psy9351 8 YGPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIE 68 (297)
Q Consensus 8 ~~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~ 68 (297)
+.+++++|||||+++|+++.+. +++++.....+-... ..|. -.|.+.....+.++++
T Consensus 22 ~~~~~~~iDiGSssi~~vv~~~-~~~~~~~~~~~~~~v--r~G~-i~di~~a~~~i~~~~~ 78 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVLDE-DGQPVAGALEWADVV--RDGI-VVDFIGAVTIVRRLKA 78 (267)
T ss_pred CCCEEEEEEccCceEEEEEEcC-CCCEEEEEecccccc--CCCE-EeeHHHHHHHHHHHHH
Confidence 4679999999999999999986 777666554444322 3344 4676776666666665
No 55
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=94.40 E-value=0.32 Score=45.82 Aligned_cols=55 Identities=25% Similarity=0.289 Sum_probs=37.8
Q ss_pred EEEEEecCCCcceEEEEeCC-CC--eEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHH
Q psy9351 11 LVGAIDEGTSSCRFIVFSAL-TG--KLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIE 68 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~-~g--~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~ 68 (297)
+++||||||+++|+++.... ++ ++++....|..- -..| .-.|.+.+-+++.++++
T Consensus 1 ~~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~g--i~~G-~I~d~~~~~~~i~~al~ 58 (371)
T TIGR01174 1 LIVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSRG--IKKG-VINDIEAAVGSIQRAIE 58 (371)
T ss_pred CEEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCC--ccCc-EEEcHHHHHHHHHHHHH
Confidence 36899999999999998642 34 455555554431 1344 34688888888888887
No 56
>PF13941 MutL: MutL protein
Probab=94.25 E-value=0.24 Score=48.02 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=36.6
Q ss_pred EEEEecCCCcceEEEEe--CCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHH
Q psy9351 12 VGAIDEGTSSCRFIVFS--ALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIE 68 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d--~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~ 68 (297)
+|.+|||+|.+|+.+|| ..+.++++..+.|+. .+ +.++..-+.++++
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTT--------v~--~~Dv~~G~~~A~~ 50 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTT--------VE--PGDVTIGLNNALE 50 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCC--------cC--cccHHHHHHHHHH
Confidence 58899999999999999 547889998888885 21 1456667777777
No 57
>PRK13324 pantothenate kinase; Reviewed
Probab=93.82 E-value=0.37 Score=43.29 Aligned_cols=64 Identities=16% Similarity=0.312 Sum_probs=40.7
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeE
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVA 91 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~ 91 (297)
+|.||+|.|++|.+++|. ++++...+.++.. .....+++...+...++ ..+....+|.+
T Consensus 2 iL~iDiGNT~ik~gl~~~--~~~~~~~r~~t~~-------~~~t~de~~~~l~~~~~------------~~~~~~~~i~~ 60 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG--DRIVSQIRYATSS-------VDSTSDQMGVFLRQALR------------ENSVDLGKIDG 60 (258)
T ss_pred EEEEEeCCCceEEEEEEC--CEEEEEEEEecCc-------cccchHHHHHHHHHHHH------------hcCCCccCCCe
Confidence 688999999999999993 5566655554410 11234555554554443 23445567888
Q ss_pred EEEcC
Q psy9351 92 VGVTN 96 (297)
Q Consensus 92 Igis~ 96 (297)
|.+|+
T Consensus 61 viisS 65 (258)
T PRK13324 61 CGISS 65 (258)
T ss_pred EEEEe
Confidence 87776
No 58
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.20 E-value=0.31 Score=44.97 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=38.7
Q ss_pred cccccCCEEEEEecCCCcceEEEEeCCCCeE---EEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHH
Q psy9351 4 IKGQYGPLVGAIDEGTSSCRFIVFSALTGKL---VAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIE 68 (297)
Q Consensus 4 ~~~~~~~~~lgIDiGtt~ik~~l~d~~~g~v---~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~ 68 (297)
..+.+.+..+|||||++++|++-... .|.. ......|+|...-.+|.. .|++.+-+.+++++.
T Consensus 4 l~~k~~~~~vGIdI~~~sVKvvqLs~-~g~~~kLe~y~~~~lp~~iv~dg~i-vd~~av~~~Lk~ala 69 (354)
T COG4972 4 LFGKKLNAAVGIDIGSHSVKVVQLSR-SGNRYKLEKYASEPLPENIVADGKI-VDYDAVASALKRALA 69 (354)
T ss_pred hhcccccceeeEeeccceEEEEEEcc-cCCceeeeeeeecccCccccccCCc-ccHHHHHHHHHHHHH
Confidence 34444446899999999999999995 5543 344555665433344433 566665554444443
No 59
>PLN02596 hexokinase-like
Probab=92.91 E-value=0.46 Score=46.58 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=36.2
Q ss_pred EEEEEecCCCcceEEEEeCCCCe---EEEEEEe--eeccccCCCCeeEeCHHHHHHHHHHHHH
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGK---LVAKHQI--SLGQTFPTEGWVEQDPMEILAVVNGTIE 68 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~---v~~~~~~--~~~~~~~~~g~~e~d~~~~~~~i~~~i~ 68 (297)
.||+||+|+|+.|++++++ .|+ +....+. ++|... ..-..+++|+.|.++|.
T Consensus 97 ~yLAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~Ip~~l-----~~~t~~eLFd~IA~~i~ 153 (490)
T PLN02596 97 LYYGLNLRGSNFLLLRARL-GGKNEPISDLYREEISIPSNV-----LNGTSQELFDYIALELA 153 (490)
T ss_pred EEEEEeeCCceEEEEEEEE-cCCCCceEEEEEEEecCChHh-----hcCCHHHHHHHHHHHHH
Confidence 5699999999999999998 653 2332222 333211 22356889999999998
No 60
>PLN02914 hexokinase
Probab=92.75 E-value=0.4 Score=46.98 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=37.6
Q ss_pred CEEEEEecCCCcceEEEEeCCCCe---EEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHH
Q psy9351 10 PLVGAIDEGTSSCRFIVFSALTGK---LVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIE 68 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d~~~g~---v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~ 68 (297)
..+|+||+|+|+.|+++++. .|+ ++...+..++ .|. ....-..+++|+.|.++|.
T Consensus 95 G~fLAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~--ip~-~l~~gt~~eLFdfIA~~i~ 152 (490)
T PLN02914 95 GLFYALDLGGTNFRVLRVQL-GGKDERVIATEFEQVS--IPQ-ELMFGTSEELFDFIASGLA 152 (490)
T ss_pred eEEEEEecCCceEEEEEEEe-cCCCCceeeeeEEEec--CCh-hhccCCHHHHHHHHHHHHH
Confidence 36799999999999999998 552 3443333332 111 1123457899999999998
No 61
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=92.57 E-value=0.93 Score=42.12 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=34.9
Q ss_pred CEEEEEecCCCcceEEEEeCCCC--eEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHH
Q psy9351 10 PLVGAIDEGTSSCRFIVFSALTG--KLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIE 68 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d~~~g--~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~ 68 (297)
..++|||||++++|++.+....+ +++.....+.+...-.+|. -.|.+.+-+++.++++
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p~~~i~~g~-i~d~~~~~~~l~~~~~ 62 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLPAGIFTEGH-IVEYQAVAEALKELLS 62 (348)
T ss_pred CcEEEEEeccCeEEEEEEEecCCceEEEEEEEEECCCCcccCCC-ccCHHHHHHHHHHHHH
Confidence 46899999999999999984233 4445555666532223332 2466665544444443
No 62
>PLN02362 hexokinase
Probab=92.56 E-value=0.5 Score=46.55 Aligned_cols=53 Identities=11% Similarity=0.274 Sum_probs=36.9
Q ss_pred CEEEEEecCCCcceEEEEeCCCCe---EEEE--EEeeeccccCCCCeeEeCHHHHHHHHHHHHH
Q psy9351 10 PLVGAIDEGTSSCRFIVFSALTGK---LVAK--HQISLGQTFPTEGWVEQDPMEILAVVNGTIE 68 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d~~~g~---v~~~--~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~ 68 (297)
..||+||+|+|+.|++++++ .|+ .+.. .+.++|... .....+++|+.|.++|.
T Consensus 95 G~fLAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~Ip~~l-----~~~~~~eLFd~IA~~i~ 152 (509)
T PLN02362 95 GTYYALDLGGTNFRVLRVQL-GGQRSSILSQDVERHPIPQHL-----MNSTSEVLFDFIASSLK 152 (509)
T ss_pred eeEEEEecCCceEEEEEEEe-cCCCcceeeceeEEEecChhh-----ccCCHHHHHHHHHHHHH
Confidence 35799999999999999998 552 2222 233333211 22357899999999998
No 63
>PLN02405 hexokinase
Probab=92.31 E-value=0.59 Score=45.94 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=37.6
Q ss_pred CEEEEEecCCCcceEEEEeCCCCe---EEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHH
Q psy9351 10 PLVGAIDEGTSSCRFIVFSALTGK---LVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIE 68 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d~~~g~---v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~ 68 (297)
..|++||+|+||.|++++.+ .|+ .+...+..++ .|. ....-..+++|+.|.++|.
T Consensus 95 G~flAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~--ip~-~~~~gt~~~LFdfIA~~i~ 152 (497)
T PLN02405 95 GLFYALDLGGTNFRVLRVLL-GGKDGRVVKQEFEEVS--IPP-HLMTGSSDALFDFIAAALA 152 (497)
T ss_pred eeEEEEecCCceEEEEEEEE-cCCCCceeEEEEEEee--cCh-hhccCCHHHHHHHHHHHHH
Confidence 36799999999999999998 552 3443333332 111 1123467889999999998
No 64
>PRK13317 pantothenate kinase; Provisional
Probab=92.12 E-value=0.2 Score=45.55 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=22.7
Q ss_pred CEEEEEecCCCcceEEEEeCCCCeEEEE
Q psy9351 10 PLVGAIDEGTSSCRFIVFSALTGKLVAK 37 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d~~~g~v~~~ 37 (297)
++.+|||+|+|.+|.+++|. ++++...
T Consensus 2 ~~~iGIDiGstt~K~v~~~~-~~~~~~~ 28 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEE-KKQRTFK 28 (277)
T ss_pred CceEEEEeCcccEEEEEEcC-CCeEEEE
Confidence 37899999999999999996 7766543
No 65
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=92.09 E-value=0.97 Score=44.53 Aligned_cols=84 Identities=19% Similarity=0.288 Sum_probs=50.6
Q ss_pred cccccCCEEEEEecCCCcceEEEEeCCCC--eEEEEEEeeeccc--cCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHH
Q psy9351 4 IKGQYGPLVGAIDEGTSSCRFIVFSALTG--KLVAKHQISLGQT--FPTEGWVEQDPMEILAVVNGTIEACQFSACVEKL 79 (297)
Q Consensus 4 ~~~~~~~~~lgIDiGtt~ik~~l~d~~~g--~v~~~~~~~~~~~--~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l 79 (297)
||+. ..++.+|||||.|+|..+++..++ +++...+..+.+- ....|. .++ +-.+...++++ . ..+.+
T Consensus 1 ~~~~-~~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~--Ls~-e~i~r~~~~L~----~-F~~~~ 71 (496)
T PRK11031 1 MLSS-SSLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDNA--LSN-EAMERGWQCLR----L-FAERL 71 (496)
T ss_pred CCCC-CCEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCCC--cCH-HHHHHHHHHHH----H-HHHHH
Confidence 3444 457899999999999999996334 3444444444331 112232 223 33455556666 4 44445
Q ss_pred HHcCCCCCCeeEEEEcCcc
Q psy9351 80 KEQGIEPTDIVAVGVTNQR 98 (297)
Q Consensus 80 ~~~~~~~~~I~~Igis~~~ 98 (297)
++.+ ..+|.+++-++.+
T Consensus 72 ~~~~--v~~i~~vATsAvR 88 (496)
T PRK11031 72 QDIP--PSQIRVVATATLR 88 (496)
T ss_pred HhCC--CCeEEEEEeHHHH
Confidence 5544 5689999888866
No 66
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=92.00 E-value=0.33 Score=44.92 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=25.9
Q ss_pred EEEecCCCcceEEEEeCCCCeEEEEEEeeec
Q psy9351 13 GAIDEGTSSCRFIVFSALTGKLVAKHQISLG 43 (297)
Q Consensus 13 lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~ 43 (297)
||+|||+-++|++++|. +|++....+.+.|
T Consensus 1 ~G~DiGGA~~K~a~~~~-~g~~~~v~~~~~p 30 (318)
T TIGR03123 1 LGIDIGGANTKAAELDE-DGRIKEVHQLYCP 30 (318)
T ss_pred CccccccceeeeEEecC-CCceeEEEEecCc
Confidence 68999999999999996 8988877777776
No 67
>PRK10854 exopolyphosphatase; Provisional
Probab=91.87 E-value=0.93 Score=44.86 Aligned_cols=84 Identities=15% Similarity=0.261 Sum_probs=51.4
Q ss_pred ccccCCEEEEEecCCCcceEEEEeCCCC--eEEEEEEeeecccc--CCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy9351 5 KGQYGPLVGAIDEGTSSCRFIVFSALTG--KLVAKHQISLGQTF--PTEGWVEQDPMEILAVVNGTIEACQFSACVEKLK 80 (297)
Q Consensus 5 ~~~~~~~~lgIDiGtt~ik~~l~d~~~g--~v~~~~~~~~~~~~--~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~ 80 (297)
|+-..+.+.+|||||.|+|..+++..++ +++...+.++.+-. ...| ..++ +-.+...++++ . ..+.++
T Consensus 6 ~~~~~~~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g--~Ls~-e~~~r~~~~L~----~-F~~~~~ 77 (513)
T PRK10854 6 KSPRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDN--MLSE-EAMERGLNCLS----L-FAERLQ 77 (513)
T ss_pred CCCCCCEEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCC--CcCH-HHHHHHHHHHH----H-HHHHHH
Confidence 4445567899999999999999997334 44555555543211 1222 2233 34555666666 4 444455
Q ss_pred HcCCCCCCeeEEEEcCcc
Q psy9351 81 EQGIEPTDIVAVGVTNQR 98 (297)
Q Consensus 81 ~~~~~~~~I~~Igis~~~ 98 (297)
+.+ .+++.+++-++.+
T Consensus 78 ~~~--v~~v~~vATsAlR 93 (513)
T PRK10854 78 GFS--PANVCIVGTHTLR 93 (513)
T ss_pred hCC--CCeEEEEehHHHH
Confidence 544 4678888888765
No 68
>PRK13320 pantothenate kinase; Reviewed
Probab=91.83 E-value=0.92 Score=40.38 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=20.5
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEE
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKH 38 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~ 38 (297)
+|.||+|.|++|.++++ +++++...
T Consensus 4 ~L~iDiGNT~ik~~~~~--~~~~~~~~ 28 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFE--GDELLEVF 28 (244)
T ss_pred EEEEEeCCCcEEEEEEE--CCEEEEEE
Confidence 78999999999999999 35666533
No 69
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=91.62 E-value=1.8 Score=41.57 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=36.8
Q ss_pred EEEEEecCCCcceEEEEeCCCC-e--EEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHH
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTG-K--LVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIE 68 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g-~--v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~ 68 (297)
++.++||||+++++++-....+ + ++...+.+-.- -..|.. .|.+...+++.++++
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~~SrG--ik~G~I-~di~~~~~sI~~av~ 64 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSHPSRG--IKKGVI-VDLDAAAQSIKKAVE 64 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEeeecccCcc--cccceE-EcHHHHHHHHHHHHH
Confidence 7999999999999999886444 2 22222222211 123433 689998989998888
No 70
>PRK03011 butyrate kinase; Provisional
Probab=91.40 E-value=0.33 Score=45.74 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=23.7
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEEEEeeec
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLG 43 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~ 43 (297)
.+|+|+-|+||+|.++|+ +.+.+......++
T Consensus 3 ~il~inpgststk~a~~~--~~~~~~~~~~~h~ 33 (358)
T PRK03011 3 RILVINPGSTSTKIAVFE--DEKPIFEETLRHS 33 (358)
T ss_pred EEEEEcCCCchheEEEEc--CCceeeeeccccC
Confidence 479999999999999998 3555555555443
No 71
>PTZ00107 hexokinase; Provisional
Probab=90.53 E-value=1.3 Score=43.13 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=36.4
Q ss_pred EEEEEecCCCcceEEEEeCCCCe-EEEEE--EeeeccccCC---CC-eeEeCHHHHHHHHHHHHH
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGK-LVAKH--QISLGQTFPT---EG-WVEQDPMEILAVVNGTIE 68 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~-v~~~~--~~~~~~~~~~---~g-~~e~d~~~~~~~i~~~i~ 68 (297)
.+|+||+|+|+.|+++++. .|. ..... ....+..... +. ..+...+++|+.|.++|.
T Consensus 75 ~fLAlDlGGTN~RV~~V~L-~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~ 138 (464)
T PTZ00107 75 VYYAIDFGGTNFRAVRVSL-RGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIK 138 (464)
T ss_pred eEEEEecCCceEEEEEEEe-CCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHH
Confidence 5799999999999999998 554 32222 2222211100 00 112257899999999998
No 72
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=90.51 E-value=1.3 Score=40.31 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=21.5
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEE
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAK 37 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~ 37 (297)
.+|||+|+|.+|.+.+|. +++++..
T Consensus 2 ~iGiDiGgT~~Kiv~~~~-~~~~~f~ 26 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEP-KGRRKFK 26 (279)
T ss_pred eEEEEeCcceEEEEEEcC-CCcEEEE
Confidence 489999999999999996 7887653
No 73
>PRK13331 pantothenate kinase; Reviewed
Probab=90.38 E-value=1.3 Score=39.62 Aligned_cols=24 Identities=29% Similarity=0.167 Sum_probs=19.9
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEE
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVA 36 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~ 36 (297)
-+|+||+|.|+++.++||. .+++.
T Consensus 8 ~~L~iDiGNT~~~~g~f~~--~~~~~ 31 (251)
T PRK13331 8 EWLALMIGNSRLHWGYFSG--ETLVK 31 (251)
T ss_pred cEEEEEeCCCcEEEEEEEC--CEEEE
Confidence 3699999999999999993 45654
No 74
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=90.37 E-value=1.3 Score=39.26 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=33.5
Q ss_pred EEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHH
Q psy9351 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIE 68 (297)
Q Consensus 14 gIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~ 68 (297)
||||||+++|+++.+. +++.++....|-... .+| .-.|.+.....+..+.+
T Consensus 1 g~dig~~~ik~v~~~~-~~~~~~~~~~~~~~~--~~g-~I~d~~~~~~~l~~l~~ 51 (239)
T TIGR02529 1 GVDLGTANIVIVVLDE-DGQPVAGVMQFADVV--RDG-IVVDFLGAVEIVRRLKD 51 (239)
T ss_pred CCCcccceEEEEEEec-CCCEEEEEecccccc--cCC-eEEEhHHHHHHHHHHHH
Confidence 6899999999999996 676555444433221 333 44677776666655554
No 75
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=90.27 E-value=1.3 Score=40.49 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=44.8
Q ss_pred EEEEecCCCcceEEEEeCCCC--eEEEEEEeeeccccC--CCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCC
Q psy9351 12 VGAIDEGTSSCRFIVFSALTG--KLVAKHQISLGQTFP--TEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPT 87 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g--~v~~~~~~~~~~~~~--~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~ 87 (297)
+.+|||||.++|..+++..++ +++...+.++.+-.. ..| ..+++ -.+.+.++++ + ..+.+++.+ .+
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g--~i~~e-~i~~~~~~l~----~-f~~~~~~~~--v~ 71 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTG--RLSEE-AIERALEALK----R-FAELLRGFP--VD 71 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCC--CcCHH-HHHHHHHHHH----H-HHHHHHhCC--CC
Confidence 478999999999999996323 344444444432111 122 22333 3445556666 4 444455544 45
Q ss_pred CeeEEEEcCcc
Q psy9351 88 DIVAVGVTNQR 98 (297)
Q Consensus 88 ~I~~Igis~~~ 98 (297)
++.+++-++.+
T Consensus 72 ~i~~vaTsa~R 82 (300)
T TIGR03706 72 EVRAVATAALR 82 (300)
T ss_pred eEEEEEcHHHH
Confidence 78877777765
No 76
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=89.90 E-value=1.7 Score=40.48 Aligned_cols=53 Identities=26% Similarity=0.340 Sum_probs=32.7
Q ss_pred EEecCCCcceEEEEeCCCC---eEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHH
Q psy9351 14 AIDEGTSSCRFIVFSALTG---KLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIE 68 (297)
Q Consensus 14 gIDiGtt~ik~~l~d~~~g---~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~ 68 (297)
|||||+.++|++-++. .+ ++......++|...-.+| .-.|++.+-+.+.++++
T Consensus 1 GiDiG~~siK~v~l~~-~~~~~~l~~~~~~~~p~~~i~~g-~i~d~~~l~~~L~~~~~ 56 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSK-KGNRFQLEAFASIPLPPGAISDG-EIVDPEALAEALKELLK 56 (340)
T ss_dssp EEEE-SSEEEEEEEET-TTT--EEEEEEEEE--TTSEETT-EES-HHHHHHHHHHHHH
T ss_pred CeecCCCeEEEEEEEE-cCCccEEEEEEEEECCCCCccCC-CcCCHHHHHHHHHHHHH
Confidence 7999999999999996 44 345667777764322233 23577776666666655
No 77
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=88.53 E-value=1.4 Score=39.09 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=22.8
Q ss_pred EEEecCCCcceEEEEeCCCCeEEEEEEeeec
Q psy9351 13 GAIDEGTSSCRFIVFSALTGKLVAKHQISLG 43 (297)
Q Consensus 13 lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~ 43 (297)
|.||||.|++|.++|+ +++++...+.++.
T Consensus 2 L~iDiGNT~i~~g~~~--~~~~~~~~r~~t~ 30 (243)
T TIGR00671 2 LLIDVGNTRIVFALNS--GNKVYQFWRLATN 30 (243)
T ss_pred EEEEECCCcEEEEEEE--CCEEEEEEEecCC
Confidence 7899999999999999 3667665555554
No 78
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=87.76 E-value=1.4 Score=40.74 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=20.9
Q ss_pred EEEecCCCcceEEEEeCCCCe--EEEEEEeee
Q psy9351 13 GAIDEGTSSCRFIVFSALTGK--LVAKHQISL 42 (297)
Q Consensus 13 lgIDiGtt~ik~~l~d~~~g~--v~~~~~~~~ 42 (297)
|+-|||+|++|.++++...+. ++...+.+.
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~~~~~~~ 32 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLIDIRRYPS 32 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEEEEEEEG
T ss_pred CeEEeCcccEEEEEEEcCCCCccccccEEEec
Confidence 467999999999999974444 344444444
No 79
>PRK13326 pantothenate kinase; Reviewed
Probab=86.91 E-value=1.7 Score=39.07 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=23.1
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEEEEeee
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISL 42 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~ 42 (297)
..|.||+|.|++|.++||. ++++...+.++
T Consensus 7 ~~L~IDiGNT~ik~glf~~--~~l~~~~r~~t 36 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKD--NKMQIFCKLKT 36 (262)
T ss_pred EEEEEEeCCCeEEEEEEEC--CEEEEEEEecc
Confidence 4688999999999999993 56666444444
No 80
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=86.90 E-value=3.6 Score=38.54 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=51.2
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCC-CeeE-eCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCC
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTE-GWVE-QDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTD 88 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~-g~~e-~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~ 88 (297)
.+||||-.+..+-++++|. +++++........ .+.. |-.. .....-.+.+...++ + + ++++++...+
T Consensus 2 ~iLgIETScd~tsvAl~~~-~~~il~~~~~sq~--~~~G~GvvP~~a~r~H~~~l~~~i~----~-~---l~~a~~~~~d 70 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTS-DGEILSNVRETYI--TPPGTGFLPRETAQHHREHILSLVK----E-A---LEEAKITPSD 70 (345)
T ss_pred eEEEEEccchhhEEEEEEC-CCcEEEEEEeecc--ccCCCCcCchHHHHHHHHHHHHHHH----H-H---HHHcCCCHHH
Confidence 5899999999999999995 7788775543332 1122 3222 222334555666666 5 5 5668888999
Q ss_pred eeEEEEcCc
Q psy9351 89 IVAVGVTNQ 97 (297)
Q Consensus 89 I~~Igis~~ 97 (297)
|.+|+++..
T Consensus 71 id~Iavt~G 79 (345)
T PTZ00340 71 ISLICYTKG 79 (345)
T ss_pred CCEEEEecC
Confidence 999999873
No 81
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=86.40 E-value=4.6 Score=31.55 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=26.4
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCee---EeCHHHHHHHHHHHHH
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWV---EQDPMEILAVVNGTIE 68 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~---e~d~~~~~~~i~~~i~ 68 (297)
+++||||++.++++++.. +......-.++.. .|..|.. -.|.+++-..+..+++
T Consensus 1 i~~iDiGs~~~~~~i~~~--~~~~~~~vl~~g~-~~s~gi~~g~Itd~~~i~~~i~~a~~ 57 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAED--GSDGYIRVLGVGE-VPSKGIKGGHITDIEDISKAIKIAIE 57 (120)
T ss_dssp EEEEEE-SSSEEEEEEET--TEEEEEEEES-----------HHHHH--HHHHHHHT--HH
T ss_pred CEEEEcCCCcEEEEEEEe--CCCCcEEEEEEec-ccccccCCCEEEEHHHHHHHHHHHHH
Confidence 478999999999999994 5555544444431 2222211 1244555555555555
No 82
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=85.89 E-value=1.3 Score=42.20 Aligned_cols=29 Identities=28% Similarity=0.524 Sum_probs=23.6
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEEEe
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQI 40 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~~~ 40 (297)
+|+|..|+||+|..|||.++.+++.+...
T Consensus 2 ILVIN~GSSS~Kfalf~~~~~~~l~~g~~ 30 (388)
T PF00871_consen 2 ILVINPGSSSTKFALFDMDSGEVLASGLV 30 (388)
T ss_dssp EEEEEEESSEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEcCChHhheeeeEECCCCCeeeechh
Confidence 68999999999999999855677765443
No 83
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=85.12 E-value=1.2 Score=43.45 Aligned_cols=33 Identities=30% Similarity=0.234 Sum_probs=28.0
Q ss_pred CEEEEEecCCCcceEEEEeCCCCeEEEEEEeee
Q psy9351 10 PLVGAIDEGTSSCRFIVFSALTGKLVAKHQISL 42 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~ 42 (297)
.|=+++|+|||.+++-++|+++|++++...--.
T Consensus 164 ~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n 196 (614)
T COG3894 164 AYGVAVDLGTSGIRAQLVDLKSGEVVATVITSN 196 (614)
T ss_pred eeeeEEecccceeeeEEEeccCCcEEEeeeccC
Confidence 377999999999999999998999998754333
No 84
>PRK12440 acetate kinase; Reviewed
Probab=85.09 E-value=9 Score=36.59 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=25.0
Q ss_pred ccCCEEEEEecCCCcceEEEEeCCCCeEEEEE
Q psy9351 7 QYGPLVGAIDEGTSSCRFIVFSALTGKLVAKH 38 (297)
Q Consensus 7 ~~~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~ 38 (297)
|..+++|.|..|+||+|..|||..+.+++.+.
T Consensus 1 ~~~~~ILviN~GSSSlKf~l~~~~~~~~l~~G 32 (397)
T PRK12440 1 MSNSYVLVINSGSSSLKFAVIDSVTGEAVLSG 32 (397)
T ss_pred CCCCEEEEEECChHhheEEEEecCCCceEEEE
Confidence 34679999999999999999996344555544
No 85
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=84.63 E-value=2.9 Score=36.16 Aligned_cols=29 Identities=28% Similarity=0.280 Sum_probs=26.1
Q ss_pred CCEEEEEecCCCcceEEEEeCCCCeEEEEE
Q psy9351 9 GPLVGAIDEGTSSCRFIVFSALTGKLVAKH 38 (297)
Q Consensus 9 ~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~ 38 (297)
.++.+|+|+||.++-..++|. +|+.++-.
T Consensus 28 sk~~vGVDLGT~~iV~~vlD~-d~~Pvag~ 56 (277)
T COG4820 28 SKLWVGVDLGTCDIVSMVLDR-DGQPVAGC 56 (277)
T ss_pred CceEEEeecccceEEEEEEcC-CCCeEEEE
Confidence 479999999999999999996 99999854
No 86
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=84.23 E-value=2.6 Score=40.46 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=35.0
Q ss_pred EEEEEecCCCcceEEEEeCC-CCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHH
Q psy9351 11 LVGAIDEGTSSCRFIVFSAL-TGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIE 68 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~-~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~ 68 (297)
-+|+||+|+|+.|++++... +|+..-..+... .|..=...+.++++|..+.+.++
T Consensus 76 ~~LaiD~GGTnlRvc~V~l~g~gt~~~~~sks~---lp~e~~~~~~~~~l~~~iadrl~ 131 (466)
T COG5026 76 SVLAIDLGGTNLRVCLVVLGGDGTFDIEQSKSF---LPVECRDSESRDELFGFIADRLA 131 (466)
T ss_pred CEEEEecCCceEEEEEEEeCCCCCcccccCccc---CchhhccCCChHHHHHHHHHHHH
Confidence 57999999999999999973 233322111111 11111122378999999999888
No 87
>PRK09604 UGMP family protein; Validated
Probab=84.12 E-value=6 Score=36.82 Aligned_cols=77 Identities=25% Similarity=0.208 Sum_probs=48.8
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEEEEeeec-cccCCCCee-EeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCC
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLG-QTFPTEGWV-EQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTD 88 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~-~~~~~~g~~-e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~ 88 (297)
++||||-.+..+-++++|. +++++........ ...+..|.. +.....--+.+...++ + + ++++++++.+
T Consensus 2 ~iLgIdTS~~~~sval~~~-~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~----~-~---L~~~~~~~~d 72 (332)
T PRK09604 2 LILGIETSCDETSVAVVDD-GRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIE----E-A---LKEAGLTLED 72 (332)
T ss_pred eEEEEEccccceEEEEEEC-CCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHH----H-H---HHHcCCCHHH
Confidence 5899999888889999995 5588875543321 111112211 1122334455666666 5 4 5667888999
Q ss_pred eeEEEEcC
Q psy9351 89 IVAVGVTN 96 (297)
Q Consensus 89 I~~Igis~ 96 (297)
|.+|+++.
T Consensus 73 id~iavt~ 80 (332)
T PRK09604 73 IDAIAVTA 80 (332)
T ss_pred CCEEEEec
Confidence 99999986
No 88
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=83.69 E-value=3.5 Score=39.99 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=23.8
Q ss_pred EecCCCcceEEEEeCCCCeEEEEEEeeec
Q psy9351 15 IDEGTSSCRFIVFSALTGKLVAKHQISLG 43 (297)
Q Consensus 15 IDiGtt~ik~~l~d~~~g~v~~~~~~~~~ 43 (297)
+|||+|.+|+.+||.++++++...+-.++
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tp 29 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITP 29 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCc
Confidence 59999999999999756777777766665
No 89
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.51 E-value=3.8 Score=41.89 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=25.9
Q ss_pred CEEEEEecCCCcceEEEEeCCCCeEEEEEEeee
Q psy9351 10 PLVGAIDEGTSSCRFIVFSALTGKLVAKHQISL 42 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~ 42 (297)
++.+|||+|+|.+-++++|. ++.++...+.++
T Consensus 2 ~~~iGID~GGTfTDaV~~~~-~~g~~~~~K~lT 33 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDE-DGGVLATIKVLT 33 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeC-CCCEEEEEEccC
Confidence 47899999999999999997 555666666555
No 90
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=83.02 E-value=2.7 Score=38.48 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=20.3
Q ss_pred ccccCCEEEEEecCCCcceEEEEeCCCCeEE
Q psy9351 5 KGQYGPLVGAIDEGTSSCRFIVFSALTGKLV 35 (297)
Q Consensus 5 ~~~~~~~~lgIDiGtt~ik~~l~d~~~g~v~ 35 (297)
+.++.+..+| |||+|+.|.+|+....++..
T Consensus 2 ~~~~~p~Lvg-DIGGTnaRfaLv~~a~~~~~ 31 (320)
T COG0837 2 KAMGYPRLVG-DIGGTNARFALVEIAPAEPL 31 (320)
T ss_pred CCCCCceEEE-ecCCcceEEEEeccCCCCcc
Confidence 3444555555 99999999999775344443
No 91
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=82.49 E-value=2.1 Score=38.81 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=27.9
Q ss_pred CCEEEEEecCCCcceEEEEeCCCCeEEEEEEeee
Q psy9351 9 GPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISL 42 (297)
Q Consensus 9 ~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~ 42 (297)
.+++++||=|||+.|+-+++. +|+++.+.+-.-
T Consensus 4 ~~~~i~iDWGTT~~R~wL~~~-dg~~l~~r~~~~ 36 (306)
T COG3734 4 EPAYIAIDWGTTNLRAWLVRG-DGAVLAERRSED 36 (306)
T ss_pred CceEEEEecCCccEEEEEEcC-Ccceeeeecccc
Confidence 478999999999999999997 999988654433
No 92
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=81.72 E-value=4.7 Score=36.05 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=25.0
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEEEeeec
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLG 43 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~ 43 (297)
.|.||+|.|+++.++++ ++++...-+.++.
T Consensus 2 ~L~iDiGNT~~~~a~~~--~~~~~~~~r~~t~ 31 (251)
T COG1521 2 LLLIDIGNTRIVFALYE--GGKVVQTWRLATE 31 (251)
T ss_pred eEEEEeCCCeEEEEEec--CCeEEEEEeeccc
Confidence 48899999999999999 5888777666664
No 93
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=81.69 E-value=6 Score=39.21 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=51.4
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeE-eCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCe
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVE-QDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDI 89 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e-~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I 89 (297)
++||||--+..+-++|++. +|++++...... ..+.+|-.. .....-.+.+...++ + + +++++++..+|
T Consensus 2 ~il~iets~~~~s~a~~~~-~~~~~~~~~~~~--~~~~gg~~p~~~~~~H~~~l~~~i~----~-~---l~~~~~~~~~i 70 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDS-DGDVLFNESDPY--KPPSGGIHPREAAEHHAEAIPKVIK----E-A---LEEAGLKPEDI 70 (535)
T ss_pred EEEEEEccccceEEEEEeC-CCcEEEEEEeec--cCCcCCCChHHHHHHHHHHHHHHHH----H-H---HHHcCCCHhhC
Confidence 6899999999999999995 678887665442 222333221 112224445666676 5 5 56788888999
Q ss_pred eEEEEcCc
Q psy9351 90 VAVGVTNQ 97 (297)
Q Consensus 90 ~~Igis~~ 97 (297)
.+|+++..
T Consensus 71 d~iav~~g 78 (535)
T PRK09605 71 DLVAFSQG 78 (535)
T ss_pred CEEEECCC
Confidence 99999853
No 94
>PLN02666 5-oxoprolinase
Probab=81.20 E-value=4.2 Score=44.56 Aligned_cols=75 Identities=12% Similarity=0.026 Sum_probs=41.9
Q ss_pred CEEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHH-HHHHHHHHHHHhhhhHHHHH-HH-HHcCCCC
Q psy9351 10 PLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPM-EILAVVNGTIEACQFSACVE-KL-KEQGIEP 86 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~-~~~~~i~~~i~~~~~~~~~~-~l-~~~~~~~ 86 (297)
+|.++||+|+|.+-++++|. ++.-+...+.++. .| .|+. .+.+.+.++++ . +.. .+ .+.++++
T Consensus 9 ~~rigIDvGGTFTD~v~~~~-~~~~~~~~K~~st--tp------~d~~~gv~~Gi~~~l~----~-~~~~~~~~~~~~~~ 74 (1275)
T PLN02666 9 KFRFCIDRGGTFTDVYAEVP-GGSDFRVLKLLSV--DP------ANYDDAPREGIRRILE----E-VTGKKIPRSAKIPT 74 (1275)
T ss_pred CEEEEEECCcCCEeEEEEec-CCCeEEEEEeCCC--CC------CChhHHHHHHHHHHHH----H-HhcCCcccccCCCh
Confidence 48899999999999999996 5543333444431 01 2332 24445555444 2 100 00 1234555
Q ss_pred CCeeEEEEcCcc
Q psy9351 87 TDIVAVGVTNQR 98 (297)
Q Consensus 87 ~~I~~Igis~~~ 98 (297)
.+|..|..++..
T Consensus 75 ~~i~~v~hGTT~ 86 (1275)
T PLN02666 75 ERIEWIRMGTTV 86 (1275)
T ss_pred HHccEEEEechH
Confidence 677777666653
No 95
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=80.58 E-value=4.9 Score=35.15 Aligned_cols=70 Identities=29% Similarity=0.333 Sum_probs=47.6
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCee
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIV 90 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~ 90 (297)
.+|+||-.|..+-+++++.++++++.....+.+ .+ .-+.+...++ + + +++++.+..++.
T Consensus 2 ~iLaiDTs~~~~s~ai~~~~~~~vl~~~~~~~~----------r~---hse~l~~~i~----~-l---l~~~~~~~~dld 60 (220)
T COG1214 2 KILAIDTSTSALSVALYLADDGKVLAEHTEKLK----------RN---HAERLMPMID----E-L---LKEAGLSLQDLD 60 (220)
T ss_pred cEEEEEcChhhhhhheeecCCCcEEEEEEEecc----------cc---HHHHHHHHHH----H-H---HHHcCCCHHHCC
Confidence 479999999999988888656888887766664 11 1223344454 4 3 455677888999
Q ss_pred EEEEcCccceE
Q psy9351 91 AVGVTNQREST 101 (297)
Q Consensus 91 ~Igis~~~~~~ 101 (297)
+|.++.--.|+
T Consensus 61 ~iav~~GPGSF 71 (220)
T COG1214 61 AIAVAKGPGSF 71 (220)
T ss_pred EEEEccCCCcc
Confidence 99887743333
No 96
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=79.86 E-value=7.1 Score=34.90 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCcceEEEEeCCCCeEEE
Q psy9351 9 GPLVGAIDEGTSSCRFIVFSALTGKLVA 36 (297)
Q Consensus 9 ~~~~lgIDiGtt~ik~~l~d~~~g~v~~ 36 (297)
...++|||-|||.+|++++|- ++.+..
T Consensus 2 ~m~fVGiDHGTsgi~~ai~d~-e~~~~F 28 (332)
T COG4020 2 TMMFVGIDHGTSGIKFAIYDG-EKDPEF 28 (332)
T ss_pred ceEEEeecCCCcceEEEEEcC-CCCceE
Confidence 446899999999999999995 665433
No 97
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=79.85 E-value=3.7 Score=40.41 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=44.2
Q ss_pred CEEEEEecCCCcceEEEEeCCC-C--eEEEEEEeeeccc--cCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCC
Q psy9351 10 PLVGAIDEGTSSCRFIVFSALT-G--KLVAKHQISLGQT--FPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGI 84 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d~~~-g--~v~~~~~~~~~~~--~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~ 84 (297)
+.+.+||+||-|+|.++++. + | +++...+....+- ....|. .+++. .+...++++ . +.+.+.. .
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~-~~~~~~~l~~~k~~vrLgegl~~~g~--L~~ea-i~R~~~aL~----~-f~e~~~~--~ 71 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEI-TPGSFQVLFREKRIVRLGEGLDATGN--LSEEA-IERALSALK----R-FAELLDG--F 71 (492)
T ss_pred ceEEEEEecCCeEEEEEEec-cCCccchhhhhhhheehhcCccccCC--cCHHH-HHHHHHHHH----H-HHHHHhh--C
Confidence 46789999999999999996 4 3 3333322222111 112222 23333 444555665 3 3333433 4
Q ss_pred CCCCeeEEEEcCcc
Q psy9351 85 EPTDIVAVGVTNQR 98 (297)
Q Consensus 85 ~~~~I~~Igis~~~ 98 (297)
..++|..|+-++.+
T Consensus 72 ~~~~v~~vATsA~R 85 (492)
T COG0248 72 GAEEVRVVATSALR 85 (492)
T ss_pred CCCEEEEehhHHHH
Confidence 46778888887766
No 98
>PRK07058 acetate kinase; Provisional
Probab=79.41 E-value=3.3 Score=39.44 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=25.3
Q ss_pred ccCCEEEEEecCCCcceEEEEeCCCC--eEEEEE
Q psy9351 7 QYGPLVGAIDEGTSSCRFIVFSALTG--KLVAKH 38 (297)
Q Consensus 7 ~~~~~~lgIDiGtt~ik~~l~d~~~g--~v~~~~ 38 (297)
+|++++|.|..|+||+|..|||..+. +++...
T Consensus 1 ~~~~~iLviNaGSSSlKf~l~~~~~~~~~~l~~G 34 (396)
T PRK07058 1 MSKPLLLTFNAGSSTVKIGLFEVDGNEARRIGKG 34 (396)
T ss_pred CCCCEEEEEECChHhheeEEEecCCCCceEEEEE
Confidence 37889999999999999999996233 455543
No 99
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=79.12 E-value=6.6 Score=33.78 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=17.9
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEE
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVA 36 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~ 36 (297)
+|.||+|.|++|.+++|. .+++.
T Consensus 1 ~L~iDiGNT~ik~~~~~~--~~~~~ 23 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDG--DKLID 23 (206)
T ss_dssp EEEEEE-SSEEEEEEEET--TEEEE
T ss_pred CEEEEECCCeEEEEEEEC--CEEEe
Confidence 478999999999999994 44554
No 100
>KOG1369|consensus
Probab=78.35 E-value=12 Score=36.46 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=34.9
Q ss_pred EEEEEecCCCcceEEEEeCCCCe--EEEEE--EeeeccccCCCCeeEeCHHHHHHHHHHHHH
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGK--LVAKH--QISLGQTFPTEGWVEQDPMEILAVVNGTIE 68 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~--v~~~~--~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~ 68 (297)
-+++||+|+|+.|+.++.. .|. ..... ..+.|...-. -..+++|+.|.+++.
T Consensus 87 ~~lalDLGGTn~Rv~~v~L-~g~~~~~~~~~~~~~ip~~~m~-----gt~~~Lfd~Ia~~l~ 142 (474)
T KOG1369|consen 87 KFLALDLGGTNFRVLLVKL-GGGRTSVRMYNKIYAIPEEIMQ-----GTGEELFDFIARCLA 142 (474)
T ss_pred CEEEEecCCCceEEEEEEe-cCCcccceeeeeeEecCHHHHc-----CchHHHHHHHHHHHH
Confidence 5699999999999999998 554 12222 2333322111 156889999999888
No 101
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=77.91 E-value=19 Score=28.97 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=19.7
Q ss_pred EEEEEecCCCcceEEEEeCCCCeE
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKL 34 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v 34 (297)
.+||||+|+..+=.++-|. .+.+
T Consensus 5 ~iLalD~G~kriGvAv~d~-~~~~ 27 (138)
T PRK00109 5 RILGLDVGTKRIGVAVSDP-LGGT 27 (138)
T ss_pred cEEEEEeCCCEEEEEEecC-CCCE
Confidence 3899999999999999996 5644
No 102
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=77.28 E-value=9.8 Score=34.93 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=48.6
Q ss_pred EEEecCCCcceEEEEeCCCCeEEEEEEeeeccc-cCCCCe-eEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCee
Q psy9351 13 GAIDEGTSSCRFIVFSALTGKLVAKHQISLGQT-FPTEGW-VEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIV 90 (297)
Q Consensus 13 lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~-~~~~g~-~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~ 90 (297)
||||-.+..+-++++|. +++++.......... ....|- .+.....--+.+...++ + + ++++++++++|.
T Consensus 1 LaidTs~~~~sval~~~-~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~----~-~---l~~~~~~~~did 71 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDE-EGNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLE----R-A---LIESNVDKSEID 71 (305)
T ss_pred CEEecCccceEEEEEEC-CCcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHH----H-H---HHHcCCCHHHCC
Confidence 58999999999999984 578887655443221 112231 12223334445666666 5 4 566888999999
Q ss_pred EEEEcC
Q psy9351 91 AVGVTN 96 (297)
Q Consensus 91 ~Igis~ 96 (297)
+|+++.
T Consensus 72 ~iav~~ 77 (305)
T TIGR00329 72 LIAYTQ 77 (305)
T ss_pred EEEEec
Confidence 999987
No 103
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=76.53 E-value=13 Score=34.35 Aligned_cols=77 Identities=22% Similarity=0.214 Sum_probs=47.8
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEEEeee-ccccCCCCee-EeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCe
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISL-GQTFPTEGWV-EQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDI 89 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~-~~~~~~~g~~-e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I 89 (297)
+|+||--+..+-++++|. +++++....... ....+..|-. +.....--+.+...++ + + +++++++..+|
T Consensus 1 iLaIdTs~~~~sval~~~-~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~----~-~---l~~~~~~~~~i 71 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDD-GKGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIE----E-A---LAEAGLTLSDI 71 (314)
T ss_pred CEEEECcccceEEEEEEC-CceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHH----H-H---HHHcCCCHHHC
Confidence 489999999999999994 445776554422 1111222322 1122334445556666 5 4 55678888999
Q ss_pred eEEEEcCc
Q psy9351 90 VAVGVTNQ 97 (297)
Q Consensus 90 ~~Igis~~ 97 (297)
.+|+++..
T Consensus 72 d~iav~~G 79 (314)
T TIGR03723 72 DAIAVTAG 79 (314)
T ss_pred CEEEEecC
Confidence 99998874
No 104
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=76.02 E-value=12 Score=32.08 Aligned_cols=63 Identities=24% Similarity=0.321 Sum_probs=42.1
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeE
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVA 91 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~ 91 (297)
+|+||-.+..+-+++++ +++++........ ..--+.+...++ + + +++++++.++|.+
T Consensus 1 iLaidTs~~~~sval~~--~~~~~~~~~~~~~-------------~~h~~~l~~~i~----~-~---l~~~~~~~~~i~~ 57 (202)
T TIGR03725 1 ILAIDTSTEALSVALLD--DGEILAERSEEAG-------------RNHSEILLPMIE----E-L---LAEAGLSLQDLDA 57 (202)
T ss_pred CEEEECCCcceEEEEEE--CCEEEEEEeehhh-------------HHHHHHHHHHHH----H-H---HHHcCCCHHHCCE
Confidence 48899999999999998 4777765443322 222333445555 4 4 4557788899999
Q ss_pred EEEcCc
Q psy9351 92 VGVTNQ 97 (297)
Q Consensus 92 Igis~~ 97 (297)
|+++.-
T Consensus 58 iav~~G 63 (202)
T TIGR03725 58 IAVGVG 63 (202)
T ss_pred EEEecC
Confidence 988763
No 105
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=74.80 E-value=7.8 Score=31.15 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=19.7
Q ss_pred EEEEEecCCCcceEEEEeCCCCeE
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKL 34 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v 34 (297)
.+||||+|+..+=.++-|. .+.+
T Consensus 2 riL~lD~G~kriGiAvsd~-~~~~ 24 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDP-LGII 24 (135)
T ss_dssp EEEEEEECSSEEEEEEEET-TTSS
T ss_pred eEEEEEeCCCeEEEEEecC-CCCe
Confidence 4799999999999999996 5543
No 106
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=74.30 E-value=13 Score=30.10 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=26.0
Q ss_pred cCCEEEEEecCCCcceEEEEeCCCCeEEEEEEeee
Q psy9351 8 YGPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISL 42 (297)
Q Consensus 8 ~~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~ 42 (297)
...+++|||=|+|.- .+++|+ +|+++...+...
T Consensus 30 ~~~lIVGiDPG~ttg-iAildL-~G~~l~l~S~R~ 62 (138)
T PF04312_consen 30 RRYLIVGIDPGTTTG-IAILDL-DGELLDLKSSRN 62 (138)
T ss_pred CCCEEEEECCCceeE-EEEEec-CCcEEEEEeecC
Confidence 567899999998865 556898 999998766555
No 107
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=74.10 E-value=3.5 Score=38.44 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=26.6
Q ss_pred EEecCCCcceEEEEeCCCCeEEEEEEeeecc
Q psy9351 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQ 44 (297)
Q Consensus 14 gIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~ 44 (297)
|||=||+|+..+.+|. +|+++...+.|+..
T Consensus 1 GIDpGT~s~dv~~~dd-~g~v~~~~~ipt~~ 30 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDD-DGKVIFYFSIPTEE 30 (343)
T ss_pred CCCCCCCcEEEEEEcc-CCcEEEEeeccHHH
Confidence 6899999999999995 79999988888863
No 108
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=73.93 E-value=26 Score=28.47 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=19.3
Q ss_pred CEEEEEecCCCcceEEEEeCCCC
Q psy9351 10 PLVGAIDEGTSSCRFIVFSALTG 32 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d~~~g 32 (297)
+.+||||+|+-+|=+++-|. .+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~-~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDI-LG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecC-CC
Confidence 36899999999999999996 55
No 109
>CHL00094 dnaK heat shock protein 70
Probab=72.95 E-value=3.8 Score=41.57 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=17.4
Q ss_pred EEEEEecCCCcceEEEEeC
Q psy9351 11 LVGAIDEGTSSCRFIVFSA 29 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~ 29 (297)
+++|||+|||+.++++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~ 21 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEG 21 (621)
T ss_pred ceEEEEeCcccEEEEEEEC
Confidence 6899999999999999973
No 110
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=72.75 E-value=3.6 Score=41.74 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=17.4
Q ss_pred EEEEEecCCCcceEEEEeC
Q psy9351 11 LVGAIDEGTSSCRFIVFSA 29 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~ 29 (297)
.++|||+|||+.++++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~ 21 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEG 21 (627)
T ss_pred cEEEEEeCcccEEEEEEEC
Confidence 5899999999999999984
No 111
>PRK13411 molecular chaperone DnaK; Provisional
Probab=71.61 E-value=4.4 Score=41.40 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=17.3
Q ss_pred EEEEEecCCCcceEEEEeC
Q psy9351 11 LVGAIDEGTSSCRFIVFSA 29 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~ 29 (297)
.++|||+|||+.++++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~ 21 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEG 21 (653)
T ss_pred cEEEEEeCcccEEEEEEEC
Confidence 5899999999999999873
No 112
>PRK13410 molecular chaperone DnaK; Provisional
Probab=70.88 E-value=4.7 Score=41.31 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=17.2
Q ss_pred EEEEEecCCCcceEEEEeC
Q psy9351 11 LVGAIDEGTSSCRFIVFSA 29 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~ 29 (297)
.++|||+|||+.++++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~ 21 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEG 21 (668)
T ss_pred cEEEEEeCCCcEEEEEEEC
Confidence 5899999999999999983
No 113
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=70.86 E-value=16 Score=33.75 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=46.7
Q ss_pred EEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeE-eCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeE
Q psy9351 13 GAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVE-QDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVA 91 (297)
Q Consensus 13 lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e-~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~ 91 (297)
||||-.+..+-+++++. +++++........ ....|... .....-.+.+...++ + + ++++++++.+|.+
T Consensus 1 Lgiets~~~~s~al~~~-~~~i~~~~~~~~~--~~~gg~~p~~~~~~H~~~l~~~i~----~-~---l~~~~~~~~did~ 69 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDE-DGEILANVSDTYV--PEKGGIHPREAAEHHAEVAPKLIK----E-A---LEEAGVSLEDIDA 69 (322)
T ss_pred CEEeccccceEEEEEEC-CCeEEEEEEeecc--cCcCCcChhHHHHHHHHHHHHHHH----H-H---HHHcCCCHHHCCE
Confidence 57888777888999995 6777775544332 22233221 122333444556666 4 4 5668888999999
Q ss_pred EEEcC
Q psy9351 92 VGVTN 96 (297)
Q Consensus 92 Igis~ 96 (297)
|+++.
T Consensus 70 Iavt~ 74 (322)
T TIGR03722 70 VAFSQ 74 (322)
T ss_pred EEEec
Confidence 99986
No 114
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=69.50 E-value=11 Score=33.96 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=16.0
Q ss_pred EEEEEecCCCcceEEEEe
Q psy9351 11 LVGAIDEGTSSCRFIVFS 28 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d 28 (297)
-+||||||+-++|++.-|
T Consensus 4 kilGiDIGGAntk~a~~D 21 (330)
T COG1548 4 KILGIDIGGANTKIASSD 21 (330)
T ss_pred eEEEeeccCccchhhhcc
Confidence 479999999999999855
No 115
>PRK07157 acetate kinase; Provisional
Probab=68.81 E-value=7.9 Score=36.99 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=21.8
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEE
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKH 38 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~ 38 (297)
+|.|..|+||+|..|||..+.+++...
T Consensus 5 iLvlN~GSSSlKf~lf~~~~~~~l~~G 31 (400)
T PRK07157 5 ILVINAGSSSIKWQLFDKENLNLIASG 31 (400)
T ss_pred EEEEECChHhheeEEEECCCCcEEEEE
Confidence 899999999999999996344555544
No 116
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=68.74 E-value=5.7 Score=40.24 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=18.8
Q ss_pred cCCEEEEEecCCCcceEEEEeC
Q psy9351 8 YGPLVGAIDEGTSSCRFIVFSA 29 (297)
Q Consensus 8 ~~~~~lgIDiGtt~ik~~l~d~ 29 (297)
...+++|||+|||+.++++++.
T Consensus 17 ~~~~~iGIDlGTt~s~va~~~~ 38 (616)
T PRK05183 17 QRRLAVGIDLGTTNSLVATVRS 38 (616)
T ss_pred cCCeEEEEEeccccEEEEEEEC
Confidence 3447899999999999999973
No 117
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=67.95 E-value=9.2 Score=36.62 Aligned_cols=28 Identities=21% Similarity=0.352 Sum_probs=21.9
Q ss_pred EEEEEecCCCcceEEEEeCCC-CeEEEEE
Q psy9351 11 LVGAIDEGTSSCRFIVFSALT-GKLVAKH 38 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~-g~v~~~~ 38 (297)
.+|.|..|+||+|..+||..+ .+++...
T Consensus 5 ~iLvlN~GSSSlKf~lf~~~~~~~~l~~G 33 (404)
T TIGR00016 5 KILVINAGSSSLKFALFDYTNGETVLLSG 33 (404)
T ss_pred eEEEEECChHhheEEEEecCCCCceEEEE
Confidence 489999999999999999633 4555543
No 118
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=66.62 E-value=5.6 Score=40.04 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=16.6
Q ss_pred EEEEecCCCcceEEEEeC
Q psy9351 12 VGAIDEGTSSCRFIVFSA 29 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~ 29 (297)
++|||+|||+.++++++.
T Consensus 2 viGIDlGtt~s~va~~~~ 19 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEG 19 (595)
T ss_pred EEEEEeCcccEEEEEEEC
Confidence 699999999999999984
No 119
>PRK14878 UGMP family protein; Provisional
Probab=65.83 E-value=25 Score=32.51 Aligned_cols=72 Identities=18% Similarity=0.180 Sum_probs=46.4
Q ss_pred EEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEe-CHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeE
Q psy9351 13 GAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQ-DPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVA 91 (297)
Q Consensus 13 lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~-d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~ 91 (297)
||||--+..+-++++| +++++....... ..+..|.... -...-.+.+...++ + + ++++++++.+|.+
T Consensus 1 l~iets~~~~s~al~~--~~~i~~~~~~~~--~~~~gg~~p~~~~~~h~~~l~~~i~----~-~---l~~a~~~~~did~ 68 (323)
T PRK14878 1 LGIESTAHTLGVGIVK--EDKVLANVRDTY--VPEKGGIHPREAAQHHAEVAPELLR----K-A---LEKAGISIEDIDA 68 (323)
T ss_pred CEEecCCcccEEEEEE--CCEEEEEEEEec--ccCcCCcCccHHHHHHHHHHHHHHH----H-H---HHHcCCCHHHCCE
Confidence 5788888888889998 466776554433 2233343321 12233445566666 5 4 5678888999999
Q ss_pred EEEcC
Q psy9351 92 VGVTN 96 (297)
Q Consensus 92 Igis~ 96 (297)
|+++.
T Consensus 69 Iavt~ 73 (323)
T PRK14878 69 VAVSQ 73 (323)
T ss_pred EEEec
Confidence 99986
No 120
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=65.78 E-value=14 Score=36.00 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=14.4
Q ss_pred EEEEEecCCCcceEEEEe
Q psy9351 11 LVGAIDEGTSSCRFIVFS 28 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d 28 (297)
+.+|||||||.++.++=.
T Consensus 4 ~SVGIDIGTSTTQlvfSr 21 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSR 21 (473)
T ss_pred EEEEEeecCCceeEEEEE
Confidence 568999999999876543
No 121
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=65.30 E-value=7.6 Score=39.72 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=18.5
Q ss_pred CCEEEEEecCCCcceEEEEeC
Q psy9351 9 GPLVGAIDEGTSSCRFIVFSA 29 (297)
Q Consensus 9 ~~~~lgIDiGtt~ik~~l~d~ 29 (297)
...++|||+|||+..+++++.
T Consensus 26 ~~~viGIDLGTTnS~vA~~~~ 46 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMDG 46 (657)
T ss_pred cceEEEEEeCcCeEEEEEEeC
Confidence 447899999999999999984
No 122
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=64.85 E-value=6.1 Score=39.53 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=15.5
Q ss_pred EEEEecCCCcceEEEEeC
Q psy9351 12 VGAIDEGTSSCRFIVFSA 29 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~ 29 (297)
++|||+|||++++++++.
T Consensus 1 viGID~Gt~~~~va~~~~ 18 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKN 18 (602)
T ss_dssp EEEEEE-SSEEEEEEEET
T ss_pred CEEEEeccCCEEEEEEEe
Confidence 689999999999999984
No 123
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=64.19 E-value=19 Score=34.17 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=22.5
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEE
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAK 37 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~ 37 (297)
.+|.|..|+||+|..+||..+++++.+
T Consensus 2 ~iLviN~GSSSlKf~l~~~~~~~~~~~ 28 (396)
T COG0282 2 KILVINAGSSSLKFQLFDMPELEVLAS 28 (396)
T ss_pred eEEEEecCcchheeeEeccCcccchhh
Confidence 479999999999999999855666654
No 124
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=63.90 E-value=17 Score=28.89 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=24.8
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEEEeee
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISL 42 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~ 42 (297)
|+|||+|....-++++|. .|+.+....+++
T Consensus 1 ~vGiDv~k~~~~v~v~~~-~~~~~~~~~~~~ 30 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDP-NGEKLRRFKFEN 30 (144)
T ss_pred eEEEEcccCeEEEEEEcC-CCcEEEEEEEec
Confidence 689999999999999997 886766655555
No 125
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=63.63 E-value=7.3 Score=39.76 Aligned_cols=20 Identities=25% Similarity=0.120 Sum_probs=17.3
Q ss_pred CEEEEEecCCCcceEEEEeC
Q psy9351 10 PLVGAIDEGTSSCRFIVFSA 29 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d~ 29 (297)
..++|||+|||+.++++++.
T Consensus 4 ~~~iGIDlGTt~s~va~~~~ 23 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKN 23 (653)
T ss_pred ccEEEEEeCcccEEEEEEeC
Confidence 35799999999999999873
No 126
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=63.14 E-value=18 Score=35.36 Aligned_cols=16 Identities=38% Similarity=0.491 Sum_probs=13.4
Q ss_pred EEEEEecCCCcceEEE
Q psy9351 11 LVGAIDEGTSSCRFIV 26 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l 26 (297)
+.+|||||||.++.++
T Consensus 7 ~SVGIDIGTsTTqlvf 22 (475)
T PRK10719 7 LSVGIDIGTTTTQVIF 22 (475)
T ss_pred EEEEEeccCceEEEEE
Confidence 5799999999987754
No 127
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=62.83 E-value=30 Score=32.35 Aligned_cols=81 Identities=20% Similarity=0.178 Sum_probs=50.4
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEEEEeeecc-ccCCCCee-EeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCC
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQ-TFPTEGWV-EQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTD 88 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~-~~~~~g~~-e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~ 88 (297)
.+|||.-.---+-+++++. ++ +++......-. ..+.+|-+ |.-...-.+.+..+++ + + +++++++.++
T Consensus 2 ~iLGIEtScDeT~vaIv~~-~~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~----~-a---l~eA~~~~~d 71 (342)
T COG0533 2 IILGIETSCDETGVAIVDE-EK-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIE----E-A---LAEAGVSLED 71 (342)
T ss_pred eEEEEEcccccceeEEEec-cC-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHH----H-H---HHHcCCCccc
Confidence 5788887777788889985 45 66533222211 11222322 2333455666777777 6 5 6778999999
Q ss_pred eeEEEEcCccceEE
Q psy9351 89 IVAVGVTNQRESTI 102 (297)
Q Consensus 89 I~~Igis~~~~~~v 102 (297)
|.+|+++. ++|++
T Consensus 72 ID~IA~T~-gPGL~ 84 (342)
T COG0533 72 IDAIAVTA-GPGLG 84 (342)
T ss_pred CCEEEEec-CCCch
Confidence 99999987 35544
No 128
>PRK12397 propionate kinase; Reviewed
Probab=61.53 E-value=14 Score=35.45 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=23.1
Q ss_pred CCEEEEEecCCCcceEEEEeCCCCeEEEEE
Q psy9351 9 GPLVGAIDEGTSSCRFIVFSALTGKLVAKH 38 (297)
Q Consensus 9 ~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~ 38 (297)
.+.+|.|..|+||+|..+||..+.+++...
T Consensus 2 ~~~iLvlN~GSSSlKf~lf~~~~~~~l~~G 31 (404)
T PRK12397 2 SYKIMAINAGSSSLKFQLLEMPQGDMLCQG 31 (404)
T ss_pred CCcEEEEECChHhheEEEEECCCCceEEEE
Confidence 334899999999999999996344556544
No 129
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=61.24 E-value=36 Score=27.89 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=19.7
Q ss_pred CCEEEEEecCCC----cceEEEEeCCCCeEEEEEEe
Q psy9351 9 GPLVGAIDEGTS----SCRFIVFSALTGKLVAKHQI 40 (297)
Q Consensus 9 ~~~~lgIDiGtt----~ik~~l~d~~~g~v~~~~~~ 40 (297)
.+-+|++-.|.. .+.++++|. +|+++...+.
T Consensus 4 ~~rVla~~~g~g~~~~~~~~v~ld~-~G~v~d~~~~ 38 (150)
T PF14639_consen 4 GPRVLALSWGSGDGDDAVFCVVLDE-NGEVLDHLKL 38 (150)
T ss_dssp ---EEEEE-TT--TTS-EEEEEE-T-TS-EEEEEEE
T ss_pred CCEEEEEEcCCCCCCCCEEEEEECC-CCcEEEEEEE
Confidence 345788888854 589999997 9999997776
No 130
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=57.02 E-value=17 Score=28.60 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=29.4
Q ss_pred eCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeEEEEcCcc
Q psy9351 54 QDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVAVGVTNQR 98 (297)
Q Consensus 54 ~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~Igis~~~ 98 (297)
.+++++++++.+++. + + +++.++++++|.+|=||...
T Consensus 13 n~~e~I~~at~eLl~----~-i---~~~N~l~~~dIvSi~FT~T~ 49 (118)
T PF07736_consen 13 NTPEEILEATRELLE----E-I---LERNELSPEDIVSIIFTVTP 49 (118)
T ss_dssp SSHHHHHHHHHHHHH----H-H---HHHTT--GGGEEEEEEEE-T
T ss_pred CCHHHHHHHHHHHHH----H-H---HHHcCCCHHHEEEEEEEeCC
Confidence 568999999999998 7 6 56788999999999888865
No 131
>PRK11678 putative chaperone; Provisional
Probab=55.94 E-value=9.8 Score=37.06 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=16.0
Q ss_pred EEEEecCCCcceEEEEe
Q psy9351 12 VGAIDEGTSSCRFIVFS 28 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d 28 (297)
++|||+|||+.-+++++
T Consensus 2 ~iGID~GTtNs~va~~~ 18 (450)
T PRK11678 2 FIGFDYGTANCSVAVMR 18 (450)
T ss_pred eEEEecCccceeeEEee
Confidence 58999999999999998
No 132
>PRK13322 pantothenate kinase; Reviewed
Probab=55.81 E-value=10 Score=33.74 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=19.1
Q ss_pred EEEEecCCCcceEEEEeCCCCeEE
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLV 35 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~ 35 (297)
+|.||+|.|++|..++|. +++++
T Consensus 2 ~L~IDiGNT~iK~~l~~~-~~~~~ 24 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN-GGQII 24 (246)
T ss_pred EEEEEeCCCcEEEEEEcC-CCchh
Confidence 588999999999999994 45544
No 133
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=55.63 E-value=16 Score=33.28 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=34.7
Q ss_pred EEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHH
Q psy9351 13 GAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNG 65 (297)
Q Consensus 13 lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~ 65 (297)
+|||-||.+.-+.-||-+.|+++-...++... ++.+|.-+.+.+.+
T Consensus 1 ~GIDpGT~smdvfgfdDEsg~vi~~~~I~rde-------Vtk~p~iiv~ii~e 46 (374)
T COG2441 1 IGIDPGTGSMDVFGFDDESGNVIVDVAIPRDE-------VTKSPRIIVDIIEE 46 (374)
T ss_pred CCcCCCCCceeEEEEecCCCCEEEEEecCHHH-------hccCchHHHHHHHH
Confidence 48999999999999986679999988777753 45677665544433
No 134
>PLN03184 chloroplast Hsp70; Provisional
Probab=55.63 E-value=13 Score=38.18 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=17.2
Q ss_pred EEEEEecCCCcceEEEEeC
Q psy9351 11 LVGAIDEGTSSCRFIVFSA 29 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~ 29 (297)
.++|||+|||+.++++++.
T Consensus 40 ~viGIDlGTt~s~va~~~~ 58 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEG 58 (673)
T ss_pred CEEEEEeCcCcEEEEEEEC
Confidence 4799999999999999973
No 135
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=55.54 E-value=13 Score=37.66 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=17.0
Q ss_pred CEEEEEecCCCcceEEEEe
Q psy9351 10 PLVGAIDEGTSSCRFIVFS 28 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d 28 (297)
..++|||+|||+..++++.
T Consensus 19 ~~viGIDlGTT~S~va~~~ 37 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIAT 37 (595)
T ss_pred ceEEEEEcCcccEEEEEEe
Confidence 4689999999999999886
No 136
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.52 E-value=37 Score=30.69 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=32.3
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHH
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTI 67 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i 67 (297)
.|.+|+|+..+-++++|+ +++.+...+.+. ..+++++-+.|.+..
T Consensus 229 alvVd~GngHttaalvde--dRI~gv~EHHT~---------~Lspekled~I~rf~ 273 (342)
T COG4012 229 ALVVDYGNGHTTAALVDE--DRIVGVYEHHTI---------RLSPEKLEDQIIRFV 273 (342)
T ss_pred eEEEEccCCceEEEEecC--CeEEEEeecccc---------cCCHHHHHHHHHHHH
Confidence 477999999999999995 588876554443 256777665555544
No 137
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=55.50 E-value=12 Score=38.29 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=16.5
Q ss_pred EEEEEecCCCcceEEEEe
Q psy9351 11 LVGAIDEGTSSCRFIVFS 28 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d 28 (297)
.++|||+|||+.++++++
T Consensus 42 ~viGIDlGTt~s~va~~~ 59 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIME 59 (663)
T ss_pred cEEEEEECcccEEEEEEe
Confidence 579999999999999886
No 138
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=55.49 E-value=11 Score=37.98 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=18.2
Q ss_pred CEEEEEecCCCcceEEEEeC
Q psy9351 10 PLVGAIDEGTSSCRFIVFSA 29 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d~ 29 (297)
+.++|||+|||+..+++++.
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~ 24 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRG 24 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeC
Confidence 36899999999999999995
No 139
>PRK12379 propionate/acetate kinase; Provisional
Probab=55.42 E-value=20 Score=34.23 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=23.7
Q ss_pred CEEEEEecCCCcceEEEEeCCCCeEEEEEE
Q psy9351 10 PLVGAIDEGTSSCRFIVFSALTGKLVAKHQ 39 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~ 39 (297)
+++|.|..|+||+|..+||..+.+++.+..
T Consensus 5 ~~iLvlN~GSSSlK~~l~~~~~~~~l~~G~ 34 (396)
T PRK12379 5 PVVLVINCGSSSIKFSVLDASDCEVLMSGI 34 (396)
T ss_pred CEEEEEECChHhheEEEEECCCCceEEEEE
Confidence 589999999999999999963345555443
No 140
>PRK13328 pantothenate kinase; Reviewed
Probab=55.07 E-value=13 Score=33.25 Aligned_cols=24 Identities=25% Similarity=0.237 Sum_probs=19.6
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEE
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVA 36 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~ 36 (297)
+|-||+|.|++|-+++|. .++++.
T Consensus 3 ~LliDiGNTriKwa~~~~-~~~~~~ 26 (255)
T PRK13328 3 ILLIDAGNSRIKWAWADA-GRPWVH 26 (255)
T ss_pred EEEEEeCccceeEEEEcC-CCceee
Confidence 578999999999999995 545554
No 141
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=53.61 E-value=44 Score=27.80 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.5
Q ss_pred EEEEEecCCCcceEEEEeCCCCe
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGK 33 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~ 33 (297)
.+||||=|++++=.++++. +++
T Consensus 3 ~iLGIDPgl~~tG~avi~~-~~~ 24 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEV-EGR 24 (164)
T ss_pred EEEEEccccCceeEEEEEe-cCC
Confidence 5899999999999999997 565
No 142
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=53.60 E-value=73 Score=30.18 Aligned_cols=82 Identities=24% Similarity=0.278 Sum_probs=43.3
Q ss_pred CEEEEEecCCC--cceEEEEeCCCC---eEEEEEEeeecccc-------CCCCeeEeCHHHH---HHHHHHHHHhhhhHH
Q psy9351 10 PLVGAIDEGTS--SCRFIVFSALTG---KLVAKHQISLGQTF-------PTEGWVEQDPMEI---LAVVNGTIEACQFSA 74 (297)
Q Consensus 10 ~~~lgIDiGtt--~ik~~l~d~~~g---~v~~~~~~~~~~~~-------~~~g~~e~d~~~~---~~~i~~~i~~~~~~~ 74 (297)
+++||+=.||| ++-+++++. ++ +++...+.|++... -.+.. .+++++ -..+-+... ++
T Consensus 1 ~~~iGlMSGTSlDGiD~alv~~-~~~~~~~l~~~~~pyp~~lr~~l~~~~~~~~--~~~~~~~~l~~~lg~~~a----~a 73 (364)
T PF03702_consen 1 QLVIGLMSGTSLDGIDAALVEF-DGWRIELLAFHSFPYPSELRERLLALSRPAA--SSLDELCELDRELGELFA----DA 73 (364)
T ss_dssp -EEEEEEE-TT-SEEEEEEEEE-SSSSEEEEEEEEEE--HHHHHHHHHCCSTTC--SHHHHHHHHHHHHHHHHH----HH
T ss_pred CEEEEEeccCCHHhhhheeEEE-ECCceEEeeeEeecCCHHHHHHHHHhhccCC--CCHHHHHHHHHHHHHHHH----HH
Confidence 47899999998 788899987 54 55666777776321 01111 112222 112223222 21
Q ss_pred HHHHHHHcCCCCCCeeEEEEcCcc
Q psy9351 75 CVEKLKEQGIEPTDIVAVGVTNQR 98 (297)
Q Consensus 75 ~~~~l~~~~~~~~~I~~Igis~~~ 98 (297)
+-+.++++++++++|..||..+|.
T Consensus 74 v~~~l~~~~i~~~~I~~IgsHGQT 97 (364)
T PF03702_consen 74 VNQFLKKNGISPSDIDLIGSHGQT 97 (364)
T ss_dssp HHHHHHHCT--GGGEEEEEE--EE
T ss_pred HHHHHHHcCCCcccccEEEeCCcc
Confidence 333466788899999999988875
No 143
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=52.56 E-value=49 Score=29.68 Aligned_cols=45 Identities=9% Similarity=0.144 Sum_probs=34.1
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHH
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTI 67 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i 67 (297)
+++||||.+.+-++++. +++|.+...+.+. ..+++.++.-+.+..
T Consensus 169 ~~~vniGN~HTlaa~v~--~~rI~GvfEHHT~---------~l~~~kL~~~l~~l~ 213 (254)
T PF08735_consen 169 IIVVNIGNGHTLAALVK--DGRIYGVFEHHTG---------MLTPEKLEEYLERLR 213 (254)
T ss_pred eEEEEeCCccEEEEEEe--CCEEEEEEecccC---------CCCHHHHHHHHHHHH
Confidence 58899999999999996 6999886655553 257888776555544
No 144
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=52.53 E-value=12 Score=37.75 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=16.2
Q ss_pred EEEEecCCCcceEEEEeC
Q psy9351 12 VGAIDEGTSSCRFIVFSA 29 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~ 29 (297)
++|||+|||+..+++++.
T Consensus 1 ~iGIDlGTtns~va~~~~ 18 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRS 18 (599)
T ss_pred CEEEEEccccEEEEEEEC
Confidence 489999999999999984
No 145
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=52.25 E-value=17 Score=33.18 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=19.6
Q ss_pred ecCCCcceEEEEeCCCCeEEEEEEeeec
Q psy9351 16 DEGTSSCRFIVFSALTGKLVAKHQISLG 43 (297)
Q Consensus 16 DiGtt~ik~~l~d~~~g~v~~~~~~~~~ 43 (297)
|=||||.|+-++|. +|+++...+.+..
T Consensus 1 DWGTSnlR~~l~~~-~g~vl~~~~~~~G 27 (287)
T PF05035_consen 1 DWGTSNLRAWLMDE-DGQVLAERSSPVG 27 (287)
T ss_dssp EE-SS-EEEEEE-C-TTEEEEEEEES--
T ss_pred CCchhhhhhheecC-CCcEEeeecCCcC
Confidence 77999999999996 8999998877665
No 146
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=51.15 E-value=62 Score=31.93 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=27.3
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEEEeeeccc
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQT 45 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~ 45 (297)
.+.+|||+.|+-.++++ +++++...+.|....
T Consensus 134 ~lviDIGGGStEl~~~~--~~~~~~~~Sl~lG~v 165 (496)
T PRK11031 134 RLVVDIGGASTELVTGT--GAQATSLFSLSMGCV 165 (496)
T ss_pred EEEEEecCCeeeEEEec--CCceeeeeEEeccch
Confidence 57899999999999998 588888888888654
No 147
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=49.32 E-value=26 Score=27.52 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=31.7
Q ss_pred eCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeEEEEcCcc
Q psy9351 54 QDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVAVGVTNQR 98 (297)
Q Consensus 54 ~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~Igis~~~ 98 (297)
.+.+++++++.+++. + + +++.++++++|.+|-||...
T Consensus 13 nt~e~I~~at~eLl~----~-i---i~~N~l~~edivSv~FT~T~ 49 (117)
T TIGR01796 13 NEAEEIGEAVAELLT----E-L---MERNELTPEDLISVIFTVTE 49 (117)
T ss_pred CCHHHHHHHHHHHHH----H-H---HHHcCCCHHHEEEEEEEecC
Confidence 568899999999998 7 6 56788999999999999875
No 148
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=49.16 E-value=26 Score=27.49 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=31.6
Q ss_pred eCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeEEEEcCcc
Q psy9351 54 QDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVAVGVTNQR 98 (297)
Q Consensus 54 ~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~Igis~~~ 98 (297)
.+.+++++++.+++. + + +++.++++++|.+|-||...
T Consensus 13 nt~e~I~~at~eLl~----~-i---~~~N~l~~edivSv~FT~T~ 49 (117)
T cd02185 13 NTAEEILEATRELLE----E-I---IERNNIKPEDIISVIFTVTP 49 (117)
T ss_pred CCHHHHHHHHHHHHH----H-H---HHHcCCCHHHEEEEEEEeCC
Confidence 468999999999998 7 6 56688999999999999875
No 149
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=48.93 E-value=14 Score=38.74 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=19.6
Q ss_pred CEEEEEecCCCcceEEEEeCCCC
Q psy9351 10 PLVGAIDEGTSSCRFIVFSALTG 32 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d~~~g 32 (297)
+|+||+||||+|+=-+|+|. +.
T Consensus 1 ~y~LGLDiGt~SvGWAVv~~-d~ 22 (805)
T TIGR01865 1 EYILGLDIGIASVGWAIVED-DY 22 (805)
T ss_pred CceeEEeecccceeEEEEec-cc
Confidence 48899999999999999996 44
No 150
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=48.51 E-value=81 Score=25.63 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEEecCCCcceEEEEeCCCCe---EEEEEEeee
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGK---LVAKHQISL 42 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~---v~~~~~~~~ 42 (297)
+||||=|++++-.++++. +++ .+......+
T Consensus 1 ILGIDPgl~~tG~avi~~-~~~~~~~i~~G~I~t 33 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEE-DGGKLRLIDYGTIKT 33 (149)
T ss_dssp EEEEE--SSEEEEEEEEE-ETTEEEEEEEEEEE-
T ss_pred CEEECCCCCCeeEEEEEe-eCCEEEEEEeCeEEC
Confidence 699999999999999997 553 334444444
No 151
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=46.42 E-value=61 Score=25.76 Aligned_cols=21 Identities=29% Similarity=0.104 Sum_probs=17.8
Q ss_pred EEEecCCCcceEEEEeCCCCeE
Q psy9351 13 GAIDEGTSSCRFIVFSALTGKL 34 (297)
Q Consensus 13 lgIDiGtt~ik~~l~d~~~g~v 34 (297)
||||+|+..+=.++-|. .+.+
T Consensus 1 laiD~G~kriGvA~~d~-~~~~ 21 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI-TGWT 21 (130)
T ss_pred CeEccCCCeEEEEEECC-CCCE
Confidence 68999999999999996 5644
No 152
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=45.64 E-value=16 Score=33.67 Aligned_cols=15 Identities=33% Similarity=0.220 Sum_probs=13.3
Q ss_pred EEEecCCCcceEEEE
Q psy9351 13 GAIDEGTSSCRFIVF 27 (297)
Q Consensus 13 lgIDiGtt~ik~~l~ 27 (297)
+|||+||+++++...
T Consensus 5 ~giDlGt~~s~i~~~ 19 (333)
T TIGR00904 5 IGIDLGTANTLVYVK 19 (333)
T ss_pred eEEecCcceEEEEEC
Confidence 899999999998764
No 153
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=45.15 E-value=79 Score=28.80 Aligned_cols=31 Identities=19% Similarity=0.114 Sum_probs=26.3
Q ss_pred EEEecCCCcceEEEEeCCCCeEEEEEEeeeccc
Q psy9351 13 GAIDEGTSSCRFIVFSALTGKLVAKHQISLGQT 45 (297)
Q Consensus 13 lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~ 45 (297)
+.+|+|+.|+..++++ +++++...+.|+...
T Consensus 128 ~v~DiGGGSte~~~~~--~~~~~~~~Sl~lG~v 158 (300)
T TIGR03706 128 LVVDIGGGSTELILGK--DFEPGEGVSLPLGCV 158 (300)
T ss_pred EEEEecCCeEEEEEec--CCCEeEEEEEccceE
Confidence 7799999999999998 478888888887654
No 154
>KOG2708|consensus
Probab=44.68 E-value=1.1e+02 Score=27.31 Aligned_cols=74 Identities=22% Similarity=0.322 Sum_probs=44.7
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCH-HHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCee
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDP-MEILAVVNGTIEACQFSACVEKLKEQGIEPTDIV 90 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~-~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~ 90 (297)
.||+.=....+-+.++. ++++++..+..+- ..|..|+...+- ..-...+...++ + + +++++++.++|.
T Consensus 4 alG~EGSANKlGvGiv~--~~~iLaN~R~TYi-tPPG~GFlP~~TA~HHr~~il~Lv~----~-a---l~ea~v~~~diD 72 (336)
T KOG2708|consen 4 ALGLEGSANKLGVGIVR--DGKILANPRHTYI-TPPGEGFLPRDTARHHRAWILGLVK----Q-A---LEEAGVTSDDID 72 (336)
T ss_pred EEecccccccceeeEEe--cceeecCcccccc-CCCCCCCCcchhHHHHHHHHHHHHH----H-H---HHHcCCChhhCC
Confidence 44544333344444454 6999987766552 234455554443 333445666666 5 4 677889999999
Q ss_pred EEEEcC
Q psy9351 91 AVGVTN 96 (297)
Q Consensus 91 ~Igis~ 96 (297)
.|+.+-
T Consensus 73 ~icyTK 78 (336)
T KOG2708|consen 73 CICYTK 78 (336)
T ss_pred EEEEcC
Confidence 998764
No 155
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=43.72 E-value=28 Score=32.30 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=21.7
Q ss_pred CEEEEEecCCCcceEEEEeCCCCeEEEE
Q psy9351 10 PLVGAIDEGTSSCRFIVFSALTGKLVAK 37 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d~~~g~v~~~ 37 (297)
+-+|.+|+|+|+++++++. +|++...
T Consensus 128 ~~~I~~DmGGTTtDi~~i~--~G~p~~~ 153 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPII--DGEVAAK 153 (318)
T ss_pred CCEEEEEcCccceeeEEec--CCEeeee
Confidence 3478999999999999998 5877654
No 156
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=43.56 E-value=16 Score=33.56 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=19.3
Q ss_pred EEEEecCCCcceEEEEeCCCCeEE
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLV 35 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~ 35 (297)
++|||=|||.+|+++.+. +++..
T Consensus 1 ~vGiDHGTtgi~f~~~~~-~~~~~ 23 (326)
T TIGR03281 1 FVGIDHGTTGIRFAIIDG-EKEPV 23 (326)
T ss_pred CccccCCCccEEEEEecC-CcceE
Confidence 479999999999999995 66543
No 157
>PRK00976 hypothetical protein; Provisional
Probab=41.65 E-value=33 Score=31.91 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=17.1
Q ss_pred EEEEEecCCCcceEEEEeC
Q psy9351 11 LVGAIDEGTSSCRFIVFSA 29 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~ 29 (297)
.++|||=|||.+|+++++.
T Consensus 2 ~~~g~dhgt~~~~~~~~~~ 20 (326)
T PRK00976 2 MFVGIDHGTTGIRFAIIEG 20 (326)
T ss_pred eEEeecCCCccEEEEEEcC
Confidence 5799999999999999963
No 158
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=41.36 E-value=41 Score=32.31 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=21.1
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEE
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKH 38 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~ 38 (297)
+|.|..|+||+|..+||..+.+++...
T Consensus 3 iLvlN~GSSSlKf~lf~~~~~~~l~~G 29 (402)
T PRK00180 3 ILVLNAGSSSLKFQLIDMPNEEVLASG 29 (402)
T ss_pred EEEEECChHhheEEEEECCCCcEEEEE
Confidence 799999999999999996333455443
No 159
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=41.06 E-value=41 Score=30.28 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=26.9
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccc
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQT 45 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~ 45 (297)
-.+.+|||+.|+-.++++ ++++....+.|+...
T Consensus 113 ~~lviDIGGGStEl~~~~--~~~~~~~~Sl~lG~v 145 (285)
T PF02541_consen 113 NGLVIDIGGGSTELILFE--NGKVVFSQSLPLGAV 145 (285)
T ss_dssp SEEEEEEESSEEEEEEEE--TTEEEEEEEES--HH
T ss_pred CEEEEEECCCceEEEEEE--CCeeeEeeeeehHHH
Confidence 457799999999999999 599999888888644
No 160
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=40.87 E-value=21 Score=33.05 Aligned_cols=15 Identities=33% Similarity=0.231 Sum_probs=13.4
Q ss_pred EEEecCCCcceEEEE
Q psy9351 13 GAIDEGTSSCRFIVF 27 (297)
Q Consensus 13 lgIDiGtt~ik~~l~ 27 (297)
+|||+||+++++...
T Consensus 6 ~gIDlGt~~~~i~~~ 20 (336)
T PRK13928 6 IGIDLGTANVLVYVK 20 (336)
T ss_pred eEEEcccccEEEEEC
Confidence 899999999999764
No 161
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=40.74 E-value=54 Score=30.04 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=17.1
Q ss_pred EEEEEecCCCcceEEEEeC
Q psy9351 11 LVGAIDEGTSSCRFIVFSA 29 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~ 29 (297)
-+|.|.=|+||+|.++|+-
T Consensus 4 riltINPGststKlaVfe~ 22 (358)
T COG3426 4 RILTINPGSTSTKLAVFED 22 (358)
T ss_pred eEEEecCCCccceEEEecC
Confidence 4799999999999999993
No 162
>KOG1386|consensus
Probab=40.61 E-value=97 Score=30.46 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=40.3
Q ss_pred cCCEEEEEecCCCcceEEEEeC--CCCe-EEEEEEeeeccccCCCC--eeEeCHHHHHHHHHHHHH
Q psy9351 8 YGPLVGAIDEGTSSCRFIVFSA--LTGK-LVAKHQISLGQTFPTEG--WVEQDPMEILAVVNGTIE 68 (297)
Q Consensus 8 ~~~~~lgIDiGtt~ik~~l~d~--~~g~-v~~~~~~~~~~~~~~~g--~~e~d~~~~~~~i~~~i~ 68 (297)
.-+|-+.||.|++.+|..||.. ++|. +.......+......+| ....+|+..-..+..+++
T Consensus 7 ~~kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~nP~~a~~~l~pLle 72 (501)
T KOG1386|consen 7 NLKYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFADNPEGASVYLTPLLE 72 (501)
T ss_pred cceEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhccChhhhHHHHHHHHH
Confidence 3468899999999999999974 2455 33333222322334566 334688888888888887
No 163
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=40.43 E-value=1.6e+02 Score=27.91 Aligned_cols=81 Identities=21% Similarity=0.298 Sum_probs=46.0
Q ss_pred EEEEEecCCC--cceEEEEeCCCC-----eEEEEEEeeeccccC-------CCCeeEeCHHHHH---HHHHHHHHhhhhH
Q psy9351 11 LVGAIDEGTS--SCRFIVFSALTG-----KLVAKHQISLGQTFP-------TEGWVEQDPMEIL---AVVNGTIEACQFS 73 (297)
Q Consensus 11 ~~lgIDiGtt--~ik~~l~d~~~g-----~v~~~~~~~~~~~~~-------~~g~~e~d~~~~~---~~i~~~i~~~~~~ 73 (297)
++||+=-||| .+-+++++. +| +++...+.|++...- ++. ..+++++- ..+-+... +
T Consensus 3 ~~iGlMSGTSlDGiD~alv~~-~g~~~~~~~~~~~~~py~~~lr~~l~~~~~~~--~~~~~~l~~l~~~lg~~~a----~ 75 (365)
T PRK09585 3 RYIGLMSGTSLDGVDAALVEI-DGEGTKVELLASATVPYPDELRAALLALLQGG--ADELERLAELDTALGRLFA----E 75 (365)
T ss_pred eEEEeccccChhhhhEEEEEE-eCCCcceEEeeeeEeeCCHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHHHHH----H
Confidence 5789988888 678888886 44 244555666653210 111 11222221 11222222 2
Q ss_pred HHHHHHHHcCCCCCCeeEEEEcCcc
Q psy9351 74 ACVEKLKEQGIEPTDIVAVGVTNQR 98 (297)
Q Consensus 74 ~~~~~l~~~~~~~~~I~~Igis~~~ 98 (297)
++-+.++++++++.+|..||..+|.
T Consensus 76 av~~~~~~~~l~~~~id~IgsHGQT 100 (365)
T PRK09585 76 AVNALLAEAGLSPEDIDAIGSHGQT 100 (365)
T ss_pred HHHHHHHHcCCCccCccEEEeCCcc
Confidence 1223366788999999999998875
No 164
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=38.16 E-value=97 Score=25.22 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=16.9
Q ss_pred EEEEecCCCcceEEEEeC
Q psy9351 12 VGAIDEGTSSCRFIVFSA 29 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~ 29 (297)
+||||-|++++=.++++.
T Consensus 2 ILGIDPGl~~~G~av~~~ 19 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQ 19 (154)
T ss_pred EEEEccCcCceEEEEEEe
Confidence 699999999999999996
No 165
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=36.72 E-value=40 Score=32.95 Aligned_cols=35 Identities=23% Similarity=0.465 Sum_probs=28.4
Q ss_pred ccCCEEEEEecCCCcceEEEEeCCCCeEEEEEEeeec
Q psy9351 7 QYGPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLG 43 (297)
Q Consensus 7 ~~~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~ 43 (297)
.+..-++-||||+..+-.++|. +|+++.....+..
T Consensus 143 Eke~gVa~IDIGgGTT~iaVf~--~G~l~~T~~l~vG 177 (475)
T PRK10719 143 ERNTRVLNIDIGGGTANYALFD--AGKVIDTACLNVG 177 (475)
T ss_pred hccCceEEEEeCCCceEEEEEE--CCEEEEEEEEecc
Confidence 4455678899999999999999 5999987766654
No 166
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=36.65 E-value=38 Score=30.83 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=17.6
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEE
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVA 36 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~ 36 (297)
-+|.+|+|+|++.++++. +|++..
T Consensus 78 ~~i~vDmGGTTtDi~~i~--~G~p~~ 101 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIK--DGRPEI 101 (290)
T ss_dssp SEEEEEE-SS-EEEEEEE--TTEE--
T ss_pred CEEEEeCCCCEEEEEEEE--CCeeec
Confidence 478999999999999998 687643
No 167
>KOG2707|consensus
Probab=35.81 E-value=78 Score=29.86 Aligned_cols=82 Identities=15% Similarity=0.150 Sum_probs=51.4
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEEE-eeeccccCCCCeeEeCHHHH-HHHHHHHHHhhhhHHHHHHHHHcCCCCCCe
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQ-ISLGQTFPTEGWVEQDPMEI-LAVVNGTIEACQFSACVEKLKEQGIEPTDI 89 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~~-~~~~~~~~~~g~~e~d~~~~-~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I 89 (297)
+|||.-.=.-+-++++|+ .++++.+.. ..+...+..+|-...-+... -+.+...++ + + +.+++.+++++
T Consensus 34 VLgIETSCDDTavaVVd~-~~~~~~~~i~~~t~~~~~yGGI~P~~a~~~Hr~ni~~~iq----r-a---l~aa~~~p~dl 104 (405)
T KOG2707|consen 34 VLGIETSCDDTAVAVVDE-FSHVLSSEIYSRTEIHRQYGGIIPTVAQLLHRENIPRLIQ----R-A---LDAAGLSPKDL 104 (405)
T ss_pred eeeEecccCcceeeeecc-cccccchhhhhhhHHHHhhCCCCChHHHHHHHHHHHHHHH----H-H---HHHcCCCcccc
Confidence 899987777888999997 898887632 11122233444332222222 234666666 5 4 45678899999
Q ss_pred eEEEEcCccceEEE
Q psy9351 90 VAVGVTNQRESTIA 103 (297)
Q Consensus 90 ~~Igis~~~~~~v~ 103 (297)
.+|+++. ++|+..
T Consensus 105 daIAVT~-gPGl~l 117 (405)
T KOG2707|consen 105 DAIAVTR-GPGLPL 117 (405)
T ss_pred eeEEEec-CCCcee
Confidence 9999987 355543
No 168
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=35.79 E-value=34 Score=31.73 Aligned_cols=13 Identities=31% Similarity=0.204 Sum_probs=11.4
Q ss_pred EEEEecCCCcceE
Q psy9351 12 VGAIDEGTSSCRF 24 (297)
Q Consensus 12 ~lgIDiGtt~ik~ 24 (297)
.+|||+||++++.
T Consensus 6 ~~giDlGt~~~~i 18 (335)
T PRK13929 6 EIGIDLGTANILV 18 (335)
T ss_pred eEEEEcccccEEE
Confidence 4899999999974
No 169
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=35.69 E-value=22 Score=33.12 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=0.0
Q ss_pred EEEecCCCcceEEEEeCCCCeEEEEEEe
Q psy9351 13 GAIDEGTSSCRFIVFSALTGKLVAKHQI 40 (297)
Q Consensus 13 lgIDiGtt~ik~~l~d~~~g~v~~~~~~ 40 (297)
+|||+||+++++..-+ +|.++.+-+.
T Consensus 4 igIDLGT~~t~i~~~~--~Giv~~epSv 29 (326)
T PF06723_consen 4 IGIDLGTSNTRIYVKG--KGIVLNEPSV 29 (326)
T ss_dssp EEEEE-SSEEEEEETT--TEEEEEEES-
T ss_pred eEEecCcccEEEEECC--CCEEEecCcE
No 170
>PRK13329 pantothenate kinase; Reviewed
Probab=34.66 E-value=30 Score=30.81 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=15.9
Q ss_pred EEEEecCCCcceEEEEe
Q psy9351 12 VGAIDEGTSSCRFIVFS 28 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d 28 (297)
.|-||+|.|++|.+++|
T Consensus 3 ~LliD~GNTriKw~~~~ 19 (249)
T PRK13329 3 FLAIDVGNTRLKWGLYD 19 (249)
T ss_pred EEEEEcCcchheeeEec
Confidence 57799999999999999
No 171
>COG1647 Esterase/lipase [General function prediction only]
Probab=33.64 E-value=69 Score=28.31 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=28.2
Q ss_pred eeEeCHHHHHHHHHHHHHhhhhHHHHHHHHHcCCCCCCeeEEEEcCcc
Q psy9351 51 WVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDIVAVGVTNQR 98 (297)
Q Consensus 51 ~~e~d~~~~~~~i~~~i~~~~~~~~~~~l~~~~~~~~~I~~Igis~~~ 98 (297)
..+..|++||+.+.+..+ + |++.+ .+.|..+|+|.-|
T Consensus 60 fl~t~~~DW~~~v~d~Y~----~-----L~~~g--y~eI~v~GlSmGG 96 (243)
T COG1647 60 FLKTTPRDWWEDVEDGYR----D-----LKEAG--YDEIAVVGLSMGG 96 (243)
T ss_pred HhcCCHHHHHHHHHHHHH----H-----HHHcC--CCeEEEEeecchh
Confidence 455789999999999888 6 45444 5678888888754
No 172
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=32.33 E-value=1e+02 Score=25.10 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=20.6
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEE
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVA 36 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~ 36 (297)
.+++||+|+-+.-.++++. ++..+.
T Consensus 2 ii~sIDiGikNlA~~iie~-~~~~i~ 26 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIEF-EGNKIR 26 (143)
T ss_pred eEEEEecCCCceeEEEEEc-CCCeEE
Confidence 5899999999999999997 554443
No 173
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=31.42 E-value=1.1e+02 Score=30.27 Aligned_cols=33 Identities=18% Similarity=0.054 Sum_probs=26.2
Q ss_pred CEEEEEecCCCcceEEEEeCCCCeEEEEEEeeecc
Q psy9351 10 PLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQ 44 (297)
Q Consensus 10 ~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~ 44 (297)
+-.+.+|||+.|+=.++.+ +.++....+.|+..
T Consensus 129 ~~~lv~DIGGGStEl~~g~--~~~~~~~~Sl~~G~ 161 (492)
T COG0248 129 GDGLVIDIGGGSTELVLGD--NFEIGLLISLPLGC 161 (492)
T ss_pred CCEEEEEecCCeEEEEEec--CCccceeEEeecce
Confidence 3468899999999999999 46777777777653
No 174
>PRK10854 exopolyphosphatase; Provisional
Probab=31.26 E-value=1.9e+02 Score=28.63 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=25.7
Q ss_pred EEEEecCCCcceEEEEeCCCCeEEEEEEeeeccc
Q psy9351 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQT 45 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~ 45 (297)
.+.+|||+.|+-.++++ ++++....+.|....
T Consensus 139 ~lvvDIGGGStEl~~~~--~~~~~~~~S~~lG~v 170 (513)
T PRK10854 139 KLVIDIGGGSTELVIGE--NFEPILVESRRMGCV 170 (513)
T ss_pred eEEEEeCCCeEEEEEec--CCCeeEeEEEeccee
Confidence 57899999999999999 477777777776543
No 175
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=28.40 E-value=74 Score=32.22 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=19.3
Q ss_pred EEEEEecCCCcceEEEEeCCCCeEEE
Q psy9351 11 LVGAIDEGTSSCRFIVFSALTGKLVA 36 (297)
Q Consensus 11 ~~lgIDiGtt~ik~~l~d~~~g~v~~ 36 (297)
.+|-||+|.|.+|.++++. ++++.
T Consensus 339 ~~LliD~GNTriKwa~~~~--~~~~~ 362 (592)
T PRK13325 339 RFLLLDGGNSRLKWAWVEN--GTFAT 362 (592)
T ss_pred eEEEEEcCcCceeEEEEcC--Cceee
Confidence 3577999999999999993 55554
No 176
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=28.13 E-value=40 Score=30.91 Aligned_cols=16 Identities=31% Similarity=0.214 Sum_probs=14.1
Q ss_pred EEEecCCCcceEEEEe
Q psy9351 13 GAIDEGTSSCRFIVFS 28 (297)
Q Consensus 13 lgIDiGtt~ik~~l~d 28 (297)
+|||+||+++|+...+
T Consensus 11 vgiDlGt~~t~i~~~~ 26 (335)
T PRK13930 11 IGIDLGTANTLVYVKG 26 (335)
T ss_pred eEEEcCCCcEEEEECC
Confidence 8999999999998754
No 177
>PRK08557 hypothetical protein; Provisional
Probab=27.48 E-value=77 Score=30.61 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=38.9
Q ss_pred ccccccccccCCHHHHHHHHHh-CCCChhhhHH----hhhCCCCCCcchHHHHHHHHHhChhhHhhh
Q psy9351 112 LYNSIVWLDARTTSTLEKILEV-VPNKNKNYLA----PLCGLPLSPYFSALKINWLMNNVPKVKEAI 173 (297)
Q Consensus 112 ~~~~i~w~D~R~~~~~~~l~~~-~~~~~~~~~~----~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~ 173 (297)
+.|...|.+. +..+.+.++ ++- ..+| .+.|+.+.+......+..+++++|+.|++.
T Consensus 316 i~PI~~Wt~~---dVW~YI~~~~lp~---npLY~~Gy~riGC~~Cp~~~~~e~~~l~~~~Pe~~~k~ 376 (417)
T PRK08557 316 VFPILDWNSL---DIWSYIYLNDILY---NPLYDKGFERIGCYLCPSALNSEFLRVKELYPELFNRW 376 (417)
T ss_pred EEecccCCHH---HHHHHHHHcCCCC---CchhhCCCCCCCccCCCCccHHHHHHHHHHCHHHHHHH
Confidence 4577788874 444555443 221 1233 448888888888888999999999999875
No 178
>PF12864 DUF3822: Protein of unknown function (DUF3822); InterPro: IPR024213 This is a family of uncharacterised bacterial proteins. However, structural-similarity searches indicate the family takes on an actin-like ATPase fold.; PDB: 3HRG_A.
Probab=26.94 E-value=3.9e+02 Score=23.52 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=32.8
Q ss_pred cCCEEEEEecCCCcceEEEEeCCCCeEEEEEEeeeccccCCCCeeEeCHHHHHHHHHHHHH
Q psy9351 8 YGPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIE 68 (297)
Q Consensus 8 ~~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~ 68 (297)
...+.|.|.++..+...+++|....+++......... +.++..+++.+.++++
T Consensus 16 ~~~~~LsI~i~~~glsf~i~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~ 68 (253)
T PF12864_consen 16 SEQYKLSIRISLDGLSFCIYDPESKEILALESYSFDT--------ELTPISLLANLKEAFK 68 (253)
T ss_dssp GGGSEEEEEE-TT-EEEEEEETTTTEEEEEEEE--------------TTS-HHHHHHHHHH
T ss_pred ccCceEEEEEcCCcEEEEEEcCCCCcEEEEEEEEecc--------cCChhHHHHHHHHHHh
Confidence 3457799999999999999997445566655444431 1256667777777776
No 179
>KOG0100|consensus
Probab=26.87 E-value=1.1e+02 Score=29.61 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=20.5
Q ss_pred CCEEEEEecCCCcceEEEEeCCCCeEE
Q psy9351 9 GPLVGAIDEGTSSCRFIVFSALTGKLV 35 (297)
Q Consensus 9 ~~~~lgIDiGtt~ik~~l~d~~~g~v~ 35 (297)
...++|||+|||..-+.++. +|++-
T Consensus 35 ~gtvigIdLGTTYsCVgV~k--NgrvE 59 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYK--NGRVE 59 (663)
T ss_pred cceEEEEecCCceeeEEEEe--CCeEE
Confidence 44689999999999999998 56543
No 180
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=26.74 E-value=96 Score=30.40 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=25.2
Q ss_pred cccCCEEEEEecCCCcceEEEEeCCCCeEEEEE
Q psy9351 6 GQYGPLVGAIDEGTSSCRFIVFSALTGKLVAKH 38 (297)
Q Consensus 6 ~~~~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~ 38 (297)
......++=||||+.....++|+ +|+++...
T Consensus 139 ~~~~~~V~NiDIGGGTtN~avf~--~G~v~~T~ 169 (473)
T PF06277_consen 139 KEHHTVVANIDIGGGTTNIAVFD--NGEVIDTA 169 (473)
T ss_pred hhhCCeEEEEEeCCCceeEEEEE--CCEEEEEE
Confidence 34455789999999999999999 58888754
No 181
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=26.08 E-value=1.1e+02 Score=28.17 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=20.2
Q ss_pred cCCEEEEEecCCCcceEEEEeCCCCeEEEEE
Q psy9351 8 YGPLVGAIDEGTSSCRFIVFSALTGKLVAKH 38 (297)
Q Consensus 8 ~~~~~lgIDiGtt~ik~~l~d~~~g~v~~~~ 38 (297)
..++. .+|+|+.|+-+++++. +|++...+
T Consensus 133 ~~Pla-IlDmG~GSTDAsii~~-~g~v~~iH 161 (332)
T PF08841_consen 133 DKPLA-ILDMGGGSTDASIINR-DGEVTAIH 161 (332)
T ss_dssp -SSEE-EEEE-SSEEEEEEE-T-TS-EEEEE
T ss_pred CCCeE-EEecCCCcccHHHhCC-CCcEEEEE
Confidence 45554 4899999999999996 89887654
No 182
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=25.71 E-value=78 Score=29.04 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=19.8
Q ss_pred EEEecCCCcceEEEEeCCCCeEEE
Q psy9351 13 GAIDEGTSSCRFIVFSALTGKLVA 36 (297)
Q Consensus 13 lgIDiGtt~ik~~l~d~~~g~v~~ 36 (297)
-.||||++-.|++.+|. +|++..
T Consensus 128 tIIDIGGQDsK~I~~d~-~G~v~d 150 (293)
T TIGR03192 128 TILDMGGQDCKAIHCDE-KGKVTN 150 (293)
T ss_pred EEEEeCCCceEEEEEcC-CCcEee
Confidence 56899999999999996 898754
No 183
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.92 E-value=82 Score=32.44 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=16.4
Q ss_pred EEEEecCCCcceEEEEe
Q psy9351 12 VGAIDEGTSSCRFIVFS 28 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l~d 28 (297)
++++|+|+|+++++++.
T Consensus 280 ~i~~DmGGTStDva~i~ 296 (674)
T COG0145 280 AIVFDMGGTSTDVALII 296 (674)
T ss_pred EEEEEcCCcceeeeeee
Confidence 79999999999999998
No 184
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=24.40 E-value=51 Score=30.28 Aligned_cols=15 Identities=33% Similarity=0.231 Sum_probs=12.8
Q ss_pred EEEEecCCCcceEEE
Q psy9351 12 VGAIDEGTSSCRFIV 26 (297)
Q Consensus 12 ~lgIDiGtt~ik~~l 26 (297)
.+|||+||+++|+..
T Consensus 7 ~igIDlGt~~~~i~~ 21 (334)
T PRK13927 7 DLGIDLGTANTLVYV 21 (334)
T ss_pred eeEEEcCcceEEEEE
Confidence 489999999999743
No 185
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=24.14 E-value=2.2e+02 Score=29.76 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=23.7
Q ss_pred CCEEEEEecCCCc-ceEEEEeCCCCeEEEEE
Q psy9351 9 GPLVGAIDEGTSS-CRFIVFSALTGKLVAKH 38 (297)
Q Consensus 9 ~~~~lgIDiGtt~-ik~~l~d~~~g~v~~~~ 38 (297)
.+.++|+|=|.-. +|.+++|. +|+.+...
T Consensus 329 ~~~~lglDPg~rtG~k~Avvd~-tGk~l~~~ 358 (780)
T COG2183 329 PKATLGLDPGFRTGCKVAVVDD-TGKLLDTA 358 (780)
T ss_pred CcceeecCCccccccEEEEEcC-CCceecee
Confidence 4478999999754 99999996 89998754
No 186
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=23.76 E-value=94 Score=28.02 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=19.5
Q ss_pred EEEecCCCcceEEEEeCCCCeEEE
Q psy9351 13 GAIDEGTSSCRFIVFSALTGKLVA 36 (297)
Q Consensus 13 lgIDiGtt~ik~~l~d~~~g~v~~ 36 (297)
-.||||++-.|++.+|. +|++..
T Consensus 100 tIiDIGGQD~K~I~~~~-~G~v~~ 122 (262)
T TIGR02261 100 AVLDIGALHGRAIRMDE-RGKVEA 122 (262)
T ss_pred EEEEeCCCceEEEEEcC-CCcEee
Confidence 45899999999999996 897753
No 187
>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]
Probab=22.99 E-value=72 Score=33.39 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=18.3
Q ss_pred ccCCEEEEEecCCCcceEEEEe
Q psy9351 7 QYGPLVGAIDEGTSSCRFIVFS 28 (297)
Q Consensus 7 ~~~~~~lgIDiGtt~ik~~l~d 28 (297)
|.++|+||+|||+.|+-=+++.
T Consensus 1 ~~~~yilglDIGi~SVGWAvve 22 (1088)
T COG3513 1 MKKAYILGLDIGINSVGWAVVE 22 (1088)
T ss_pred CCcceEEEeeccccceeeEEee
Confidence 3567999999999999776665
No 188
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=20.69 E-value=93 Score=22.57 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=16.7
Q ss_pred HHHhcccCCCCCCCCCcccC
Q psy9351 222 PMLCGFFTIPMDILPTICSS 241 (297)
Q Consensus 222 ~~~l~~~gi~~~~LP~l~~~ 241 (297)
.++|+.++|.+.+||.|..+
T Consensus 27 ~~vLk~l~i~~~qLPkI~~~ 46 (80)
T COG2012 27 KEVLKELGIEPEQLPKIKAS 46 (80)
T ss_pred HHHHHHhCCCHHHCCccccc
Confidence 45899999999999998644
Done!