RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9351
(297 letters)
>gnl|CDD|212664 cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kinase 1 and 3-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a group of
metazoan glycerol kinases (GKs), coded by X
chromosome-linked GK genes, and glycerol kinase
(GK)-like proteins, coded by autosomal testis-specific
GK-like genes (GK-like genes, GK1 and GK3). Sequence
comparison shows that metazoan GKs and GK-like proteins
in this family are closely related to the bacterial GKs,
which catalyze the Mg-ATP dependent phosphorylation of
glycerol to yield glycerol 3-phosphate (G3P). The
metazoan GKs do have GK enzymatic activity. However, the
GK-like metazoan proteins do not exhibit GK activity and
their biological functions are not yet clear. Some of
them lack important functional residues involved in the
binding of ADP and Mg2+, which may result in the loss of
GK catalytic function. Others that have conserved
catalytic residues have lost their GK activity as well;
the reason remains unclear. It has been suggested the
conserved catalytic residues might facilitate them
performing a distinct function. GKs belong to the FGGY
family of carbohydrate kinases, the monomers of which
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 504
Score = 504 bits (1300), Expect = e-179
Identities = 188/286 (65%), Positives = 232/286 (81%), Gaps = 5/286 (1%)
Query: 10 PLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEA 69
PLVGAID+GTSS RF+VF+A T +L++ HQ+ + Q FP EGWVEQDP EIL V IE
Sbjct: 1 PLVGAIDQGTSSTRFLVFNAKTAELLSSHQVEIKQIFPKEGWVEQDPKEILNSVYECIE- 59
Query: 70 CQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEK 129
C +KLKE I+ +DI A+G+TNQRE+T+ WDK TGEPLYN+IVWLD RT ST++K
Sbjct: 60 ---KTC-KKLKELNIDVSDIKAIGITNQRETTVVWDKYTGEPLYNAIVWLDIRTQSTVDK 115
Query: 130 ILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIW 189
+L +P+KNKNYL +CGLP+S YFSA+K+ WL++NVP+V++A+++ RC GTVD+W+IW
Sbjct: 116 LLAKIPDKNKNYLKSICGLPISTYFSAVKLRWLLDNVPEVRKAVEEKRCLFGTVDSWLIW 175
Query: 190 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFV 249
NLTGG +GG +ITDV+NASRTMLMNIETLEWDP LC FF IPM+ILP I SSSEIYG+
Sbjct: 176 NLTGGPNGGVHITDVTNASRTMLMNIETLEWDPELCKFFGIPMEILPEIRSSSEIYGYIK 235
Query: 250 SGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295
GPL+G+PISG LGDQ AAL+GQ C K G AK+TYGTGCFLLYNTG
Sbjct: 236 EGPLEGIPISGILGDQQAALVGQMCFKKGQAKNTYGTGCFLLYNTG 281
>gnl|CDD|233353 TIGR01311, glycerol_kin, glycerol kinase. This model describes
glycerol kinase, a member of the FGGY family of
carbohydrate kinases [Energy metabolism, Other].
Length = 493
Score = 434 bits (1118), Expect = e-152
Identities = 154/288 (53%), Positives = 189/288 (65%), Gaps = 16/288 (5%)
Query: 10 PLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEA 69
P + AID+GT+S R IVF G +VA HQ Q FP GWVE DPMEI V I
Sbjct: 1 PYILAIDQGTTSSRAIVFDK-DGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIA- 58
Query: 70 CQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEK 129
E L + GI+P DI A+G+TNQRE+T+ WDK TG+PLYN+IVW D RT S E+
Sbjct: 59 -------EALAKAGIKPDDIAAIGITNQRETTVVWDKATGKPLYNAIVWQDRRTASICEE 111
Query: 130 ILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIW 189
+ ++ GLPL PYFSA K+ WL++NVP V+EA ++ GT+DTW+IW
Sbjct: 112 LKAEGYG---EFIREKTGLPLDPYFSATKLRWLLDNVPGVREAAERGELLFGTIDTWLIW 168
Query: 190 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFV 249
NLTGGK ++TDV+NASRTML NI TL+WD L F IP +ILP + SSSE+YG+
Sbjct: 169 NLTGGK---VHVTDVTNASRTMLFNIHTLDWDDELLELFGIPREILPEVRSSSEVYGYTD 225
Query: 250 SGPLK-GVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGN 296
G L +PI+G LGDQ AAL GQ C KPG AK+TYGTGCFLL NTG
Sbjct: 226 PGLLGAEIPITGVLGDQQAALFGQACFKPGQAKNTYGTGCFLLMNTGE 273
>gnl|CDD|198347 cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY family
of carbohydrate kinases. This subfamily includes
glycerol kinases (GK; EC 2.7.1.30) and glycerol
kinase-like proteins from all three kingdoms of living
organisms. Glycerol is an important intermediate of
energy metabolism and it plays fundamental roles in
several vital physiological processes. GKs are involved
in the entry of external glycerol into cellular
metabolism. They catalyze the rate-limiting step in
glycerol metabolism by transferring a phosphate from ATP
to glycerol thus producing glycerol 3-phosphate (G3P) in
the cytoplasm. Human GK deficiency, called
hyperglycerolemia, is an X-linked recessive trait
associated with psychomotor retardation, osteoporosis,
spasticity, esotropia, and bone fractures. Under
different conditions, GKs from different species may
exist in different oligomeric states. The monomer of GKs
is composed of two large domains separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain. The high affinity ATP binding site of GKs is
created only by a substrate-induced conformational
change. Based on sequence similarity, some GK-like
proteins from metazoa, which have lost their GK
enzymatic activity, are also included in this CD.
Members in this subfamily belong to the FGGY family of
carbohydrate kinases.
Length = 484
Score = 427 bits (1100), Expect = e-149
Identities = 153/290 (52%), Positives = 198/290 (68%), Gaps = 19/290 (6%)
Query: 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEAC 70
+ AID+GT+S RFI+F G++V+ HQ+ Q +P GWVE DP EI A
Sbjct: 1 YILAIDQGTTSTRFIIFDR-DGEVVSSHQVEHEQIYPQPGWVEHDPEEIWA--------- 50
Query: 71 QFSACVEK-LKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEK 129
C+E+ LK+ I P I A+G+TNQRE+T+AWDK TG+PLYN+IVW D RT+ +E+
Sbjct: 51 NVVQCIEEALKKLRISPEQIKAIGITNQRETTVAWDKETGKPLYNAIVWQDTRTSEIVEE 110
Query: 130 ILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIW 189
+ + N +Y GLP+SPYFSALK+ WL+ NVP+V+EAI++ GT+DTW+IW
Sbjct: 111 LKA---DGNADYFREKTGLPISPYFSALKLRWLLENVPEVREAIEEGTLLFGTIDTWLIW 167
Query: 190 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFV 249
NLTGGK ++TDV+NASRTMLMN+ TL+WD L F IP + LP I SSSE+YG+
Sbjct: 168 NLTGGK---VHVTDVTNASRTMLMNLHTLQWDEELLELFGIPSECLPEIRSSSEVYGYTN 224
Query: 250 SGPL--KGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGNH 297
G L +G+PI+GCLGDQ AAL GQ C + G AK TYGTGCFLL NTG
Sbjct: 225 EGGLLGEGIPIAGCLGDQQAALFGQGCFEAGDAKCTYGTGCFLLMNTGEK 274
>gnl|CDD|240348 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional.
Length = 504
Score = 388 bits (1000), Expect = e-134
Identities = 144/290 (49%), Positives = 192/290 (66%), Gaps = 15/290 (5%)
Query: 10 PLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEA 69
+G+ID+GT+S RFI+F G +V+ HQI Q P GW+E DP EIL V +
Sbjct: 2 KYIGSIDQGTTSTRFIIFDEK-GNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCM-- 58
Query: 70 CQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEK 129
+ ++KL+E+G I A+G+TNQRE+ +AWDK+TG+PLYN+IVWLD RT + +
Sbjct: 59 ---NEAIKKLREKGPS-FKIKAIGITNQRETVVAWDKVTGKPLYNAIVWLDTRTYDIVNE 114
Query: 130 ILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIW 189
+ + N + + GLP+S YFSA KI W++ NVP VK+A+ + GT+DTW+IW
Sbjct: 115 LTKKYGGSN--FFQKITGLPISTYFSAFKIRWMLENVPAVKDAVKEGTLLFGTIDTWLIW 172
Query: 190 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFV 249
NLTGGK ++TDV+NASRT LMNI+TL+WD L F IP + LP I SSSE +G
Sbjct: 173 NLTGGKS---HVTDVTNASRTFLMNIKTLKWDEELLNKFGIPKETLPEIKSSSENFGTIS 229
Query: 250 S---GPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGN 296
L+GVPI+GC+GDQ AAL+G C + G AK+TYGTGCFLL NTG
Sbjct: 230 GEAVPLLEGVPITGCIGDQQAALIGHGCFEKGDAKNTYGTGCFLLMNTGT 279
>gnl|CDD|215166 PLN02295, PLN02295, glycerol kinase.
Length = 512
Score = 382 bits (984), Expect = e-131
Identities = 150/289 (51%), Positives = 196/289 (67%), Gaps = 10/289 (3%)
Query: 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEAC 70
VGAID+GT+S RFI++ + VA HQ+ Q +P GWVE DPMEIL V I
Sbjct: 1 FVGAIDQGTTSTRFIIYDR-DARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKA 59
Query: 71 QFSACVEKLKEQGIE-PTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEK 129
+EK +G + + A+G+TNQRE+T+AW K TG PLYN+IVW+D+RT+S +
Sbjct: 60 -----LEKAAAKGHNVDSGLKAIGITNQRETTVAWSKSTGRPLYNAIVWMDSRTSSICRR 114
Query: 130 ILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIW 189
+ + + K+++ CGLP+S YFSA K+ WL+ NV VKEA+ GT+D+W+IW
Sbjct: 115 LEKELSGGRKHFVE-TCGLPISTYFSATKLLWLLENVDAVKEAVKSGDALFGTIDSWLIW 173
Query: 190 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFV 249
NLTGG GG ++TDV+NASRTMLMN++TL+WD IP +ILP I S+SE+ G
Sbjct: 174 NLTGGASGGVHVTDVTNASRTMLMNLKTLDWDKPTLEALGIPAEILPKIVSNSEVIGTIA 233
Query: 250 SG-PLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGNH 297
G PL GVPI+GCLGDQHAA+LGQ C +PG AKSTYGTGCF+L NTG
Sbjct: 234 KGWPLAGVPIAGCLGDQHAAMLGQRC-RPGEAKSTYGTGCFILLNTGEE 281
>gnl|CDD|198367 cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisiae Gut1p and
related proteins; belongs to the FGGY family of
carbohydrate kinases. This subgroup corresponds to a
small group of fungal glycerol kinases (GK), including
Saccharomyces cerevisiae Gut1p/YHL032Cp, which
phosphorylates glycerol to glycerol-3-phosphate in the
cytosol. Glycerol utilization has been considered as the
sole source of carbon and energy in S. cerevisiae, and
is mediated by glycerol kinase and glycerol 3-phosphate
dehydrogenase, which is encoded by the GUT2 gene.
Members in this family show high similarity to their
prokaryotic and eukaryotic homologs. GKs belong to the
FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 496
Score = 379 bits (976), Expect = e-130
Identities = 153/288 (53%), Positives = 200/288 (69%), Gaps = 8/288 (2%)
Query: 9 GPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIE 68
PLVG+ID+GT+S RFI+F+ G+ VA HQI Q +P GW E DP EI++ V I
Sbjct: 1 TPLVGSIDQGTTSTRFILFNR-DGQPVASHQIEFSQIYPHPGWHEHDPEEIVSSVVQCIA 59
Query: 69 ACQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLE 128
+ ++ L+ G D+ +G+TNQRE+T+ WD+ TG+PLYN+IVW D RTTST+
Sbjct: 60 SA-----LKSLETSGFSKYDVKVIGITNQRETTVVWDRETGKPLYNAIVWNDTRTTSTVR 114
Query: 129 KILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWII 188
+ LE K L +CGLPLS YFS++K+ W+++NVP+VK+A D GTVD+W+I
Sbjct: 115 E-LESKLKKGAEALREICGLPLSTYFSSVKLRWMLDNVPEVKKAYDDGDLAFGTVDSWLI 173
Query: 189 WNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTI-PMDILPTICSSSEIYGH 247
+NLTGG ++TDV+NASRTM MN+ TL++D L FF I ILP I SSSE+YG+
Sbjct: 174 YNLTGGPKTKVHVTDVTNASRTMFMNLATLKYDQKLLDFFGIDKKIILPEIVSSSEVYGN 233
Query: 248 FVSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295
GPL+GVPI+GCLGDQ AAL+GQ PG AK+TYGTGCFLLYNTG
Sbjct: 234 IAYGPLEGVPIAGCLGDQSAALVGQKAFTPGEAKNTYGTGCFLLYNTG 281
>gnl|CDD|223628 COG0554, GlpK, Glycerol kinase [Energy production and conversion].
Length = 499
Score = 373 bits (961), Expect = e-128
Identities = 140/288 (48%), Positives = 178/288 (61%), Gaps = 16/288 (5%)
Query: 10 PLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEA 69
+ AID+GT+S R IVF G +VA Q Q +P GWVE DP+EI A
Sbjct: 5 KYILAIDQGTTSSRAIVFDE-DGNIVAIAQREFTQIYPQPGWVEHDPLEIWA-------- 55
Query: 70 CQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEK 129
S E L + GI+P +I A+G+TNQRE+T+ WDK TG+P+YN+IVW D RT E+
Sbjct: 56 SVRSVLKEALAKAGIKPGEIAAIGITNQRETTVVWDKETGKPIYNAIVWQDRRTADICEE 115
Query: 130 ILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIW 189
+ + + + GL L PYFSA KI W+++NVP +E ++ GT+DTW+IW
Sbjct: 116 LKA---DGYEERIREKTGLVLDPYFSATKIKWILDNVPGARERAEKGELLFGTIDTWLIW 172
Query: 190 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFV 249
LTGGK ++TD SNASRTML NI +LEWD L IP +LP + SSEIYG
Sbjct: 173 KLTGGK---VHVTDYSNASRTMLFNIHSLEWDDELLELLGIPRSMLPEVRPSSEIYGVTG 229
Query: 250 SGPLKG-VPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGN 296
G L VPI+G GDQ AAL GQ C +PG+AK+TYGTGCFLL NTG
Sbjct: 230 IGFLGAEVPITGVAGDQQAALFGQGCFEPGMAKNTYGTGCFLLMNTGE 277
>gnl|CDD|198361 cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup is composed of mostly bacterial
and archaeal glycerol kinases (GK), including the well
characterized proteins from Escherichia coli (EcGK),
Thermococcus kodakaraensis (TkGK), and Enterococcus
casseliflavus (EnGK). GKs contain two large domains
separated by a deep cleft that forms the active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain. The high affinity ATP binding
site of EcGK is created only by a substrate-induced
conformational change, which is initiated by
protein-protein interactions through complex formation
with enzyme IIAGlc (also known as IIIGlc), the
glucose-specific phosphocarrier protein of the
phosphotransferase system (PTS). EcGK exists in a
dimer-tetramer equilibrium. IIAGlc binds to both EcGK
dimer and tetramer, and inhibits the uptake and
subsequent metabolism of glycerol and maltose. Another
well-known allosteric regulator of EcGK is fructose
1,6-bisphosphate (FBP), which binds to the EcGK tetramer
and plays an essential role in the stabilization of the
inactive tetrameric form. EcGK requires Mg2+ for its
enzymatic activity. Members in this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 486
Score = 369 bits (949), Expect = e-126
Identities = 134/287 (46%), Positives = 177/287 (61%), Gaps = 22/287 (7%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFS 73
AID+GT+S R I+F G +VA Q Q +P GWVE DP EI Q +
Sbjct: 4 AIDQGTTSSRAILFDH-DGNIVAVAQREFTQIYPKPGWVEHDPEEIWES--------QLA 54
Query: 74 ACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEV 133
E L + GI +DI A+G+TNQRE+T+ WD+ TG+P+YN+IVW D RT E++
Sbjct: 55 VAREALAKAGIRASDIAAIGITNQRETTVVWDRETGKPVYNAIVWQDRRTADICEEL--- 111
Query: 134 VPNKNKNYLAPLC---GLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWN 190
K + + + GL L PYFSA KI W+++NVP +E ++ GT+D+W+IW
Sbjct: 112 ---KAEGHEEMIREKTGLVLDPYFSATKIRWILDNVPGARERAERGELAFGTIDSWLIWK 168
Query: 191 LTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVS 250
LTGGK + TDV+NASRTML NI TLEWD L F IP +LP + SSE++G+
Sbjct: 169 LTGGK---VHATDVTNASRTMLFNIHTLEWDDELLELFGIPASMLPEVKPSSEVFGYTDP 225
Query: 251 GPL-KGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGN 296
L +PI+G GDQ AAL GQ C +PG+AK+TYGTGCF+L NTG
Sbjct: 226 DLLGAEIPIAGIAGDQQAALFGQACFEPGMAKNTYGTGCFMLMNTGE 272
>gnl|CDD|234594 PRK00047, glpK, glycerol kinase; Provisional.
Length = 498
Score = 356 bits (916), Expect = e-121
Identities = 132/292 (45%), Positives = 172/292 (58%), Gaps = 27/292 (9%)
Query: 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQ 71
+ A+D+GT+S R I+F G +V+ Q Q FP GWVE DP EI A I
Sbjct: 7 ILALDQGTTSSRAIIFDH-DGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVI---- 61
Query: 72 FSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKIL 131
E L + GI P I A+G+TNQRE+T+ WDK TG P+YN+IVW D RT E++
Sbjct: 62 ----AEALAKAGISPDQIAAIGITNQRETTVVWDKETGRPIYNAIVWQDRRTADICEELK 117
Query: 132 -----EVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTW 186
+ + K GL + PYFS KI W+++NV +E ++ GT+DTW
Sbjct: 118 RDGYEDYIREKT--------GLVIDPYFSGTKIKWILDNVEGARERAEKGELLFGTIDTW 169
Query: 187 IIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYG 246
++W LTGGK ++TD +NASRTML NI TL+WD L IP +LP + SSE+YG
Sbjct: 170 LVWKLTGGK---VHVTDYTNASRTMLFNIHTLDWDDELLELLDIPRSMLPEVRPSSEVYG 226
Query: 247 HFV-SGPLKG-VPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGN 296
G G VPI+G GDQ AAL GQ C +PG+AK+TYGTGCF+L NTG
Sbjct: 227 KTNPYGFFGGEVPIAGIAGDQQAALFGQLCFEPGMAKNTYGTGCFMLMNTGE 278
>gnl|CDD|198362 cd07789, FGGY_CsGK_like, Cellulomonas sp. glycerol kinase-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a small group of
bacterial glycerol kinases (GK) with similarity to
Cellulomonas sp. glycerol kinase (CsGK). CsGK might
exist as a dimer. Its monomer is composed of two large
domains separated by a deep cleft that forms the active
site. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain. The regulation
of the catalytic activity of this group has not yet been
examined. Members in this subgroup belong to the FGGY
family of carbohydrate kinases.
Length = 495
Score = 345 bits (886), Expect = e-117
Identities = 141/285 (49%), Positives = 180/285 (63%), Gaps = 13/285 (4%)
Query: 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQ 71
V AID+GT+S R IVF G++V+ Q Q FP GWVE DP EI I
Sbjct: 2 VAAIDQGTTSTRCIVFDH-HGRIVSVAQKEHRQIFPRPGWVEHDPEEIWENTRRVIS--- 57
Query: 72 FSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKIL 131
L + G+ P DI AVG+TNQRE+T+ WD+ TG P+YN+IVW D RT ++
Sbjct: 58 -----GALAKAGLTPEDIAAVGITNQRETTVVWDRATGRPVYNAIVWQDTRTDEICRELA 112
Query: 132 EVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNL 191
++ + GLPL+ YFS KI W+++NVP +E ++ GT+DTW++WNL
Sbjct: 113 A---DEGQQRFRARTGLPLATYFSGPKIRWILDNVPGARERAEKGDLLFGTMDTWLLWNL 169
Query: 192 TGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFV-S 250
TGG GG ++TDV+NASRTMLM++ETL+WDP L F IP +LP I SSE+YG
Sbjct: 170 TGGPRGGVHVTDVTNASRTMLMDLETLDWDPELLAAFGIPRSMLPEIRPSSEVYGTVRGR 229
Query: 251 GPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295
G L GVPI+G LGDQ AAL GQ C + G AK+TYGTGCFLL NTG
Sbjct: 230 GILAGVPIAGVLGDQQAALFGQTCFEAGEAKNTYGTGCFLLLNTG 274
>gnl|CDD|198368 cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and related proteins;
belongs to the FGGY family of carbohydrate kinases.
This subgroup includes Arabidopsis NHO1 (also known as
NONHOST1, or noh-host resistant 1) and other putative
plant glycerol kinases, which share strong homology with
glycerol kinases from bacteria, fungi, and animals.
Nonhost resistance of plants refers to the phenomenon
observed when all members of a plant species are
typically resistant to a specific parasite. NHO1 is
required for nonspecific resistance to nonhost
Pseudomonas bacteria, it is also required for resistance
to the fungal pathogen Botrytis cinerea. This subgroup
belongs to the FGGY family of carbohydrate kinases, the
monomers of which contain two large domains, which are
separated by a deep cleft that forms the active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain.
Length = 503
Score = 314 bits (806), Expect = e-105
Identities = 139/289 (48%), Positives = 191/289 (66%), Gaps = 12/289 (4%)
Query: 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEAC 70
+G+ID+GT+S RFI++ K+VA HQ+ Q +P GWVE DPMEIL T++ C
Sbjct: 1 YIGSIDQGTTSTRFIIYDT-AAKVVASHQVEFTQIYPQAGWVEHDPMEILE----TVKKC 55
Query: 71 QFSACVEKLKEQGIE-PTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEK 129
A K K +G++ + A+G+TNQRE+T+ W + TG PLYN+IVW+DART+S +
Sbjct: 56 MEGAL-AKAKAKGLDVLDGLKAIGITNQRETTVVWSRSTGLPLYNAIVWMDARTSSICRR 114
Query: 130 ILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIW 189
+ + +P + CGLP+S YFSA K+ WLM +V +VK A+ GT+DTW+IW
Sbjct: 115 LEKELPE-GGRHFVETCGLPISTYFSATKLLWLMEHVDEVKAAVKSGDALFGTIDTWLIW 173
Query: 190 NLTGGKDG--GKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGH 247
NLTGG +G G ++TD +NA+RTMLM+++TL+W IP ILP I S+ E+ G
Sbjct: 174 NLTGGINGEEGVHVTDCTNAARTMLMDLKTLQWHEPTLKDLGIPRSILPKIISNVEVIGE 233
Query: 248 FVSG-PLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295
G P G+ ++GCLGDQHAA+LGQ C + G AKSTYGTGCF+L NTG
Sbjct: 234 ISEGWPFAGIQLAGCLGDQHAAMLGQQC-RKGEAKSTYGTGCFILLNTG 281
>gnl|CDD|198378 cd10427, FGGY_GK_1, Uncharacterized subgroup; belongs to the
glycerol kinases subfamily of the FGGY family of
carbohydrate kinases. This subgroup contains
uncharacterized bacterial proteins belonging to the
glycerol kinase subfamily of the FGGY family of
carbohydrate kinases. The glycerol kinase subfamily
includes glycerol kinases (GK; EC 2.7.1.30), and
glycerol kinase-like proteins from all three kingdoms of
living organisms. Glycerol is an important intermediate
of energy metabolism and it plays fundamental roles in
several vital physiological processes. GKs are involved
in the entry of external glycerol into cellular
metabolism. They catalyze the rate-limiting step in
glycerol metabolism by transferring a phosphate from ATP
to glycerol thus producing glycerol 3-phosphate (G3P) in
the cytoplasm. Under different conditions, GKs from
different species may exist in different oligomeric
states. The monomer of GKs is composed of two large
domains separated by a deep cleft that forms the active
site. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain.
Length = 487
Score = 313 bits (803), Expect = e-104
Identities = 124/285 (43%), Positives = 171/285 (60%), Gaps = 17/285 (5%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFS 73
AID+ T + ++F G+L+A+ S Q +P GWVE DP EI T++A +
Sbjct: 4 AIDQSTQGTKALLFDE-KGELLARADKSHRQIYPENGWVEHDPEEIY---ENTLQAVK-- 57
Query: 74 ACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEV 133
+ L+E GI+P +I +G+TNQRE+T+AWDK TG+PLYN+IVW R + E++ E
Sbjct: 58 ---DLLEEFGIDPAEIEGLGITNQRETTVAWDKRTGKPLYNAIVWQCQRGKAICERLKE- 113
Query: 134 VPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTG 193
+ GL + PYFSA K+ WL+ NV V+EA + GT+D+W+I+ LT
Sbjct: 114 --EGYAELIKQKTGLKIDPYFSASKMAWLLENVEGVREAASKGDLAFGTIDSWLIYKLTN 171
Query: 194 GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHF-VSGP 252
GK + TD SNASRT L NI TL+WD LC F IP ILP + S ++G+ ++G
Sbjct: 172 GK---SFKTDYSNASRTQLFNIHTLDWDEELCELFGIPRKILPEVLDSDSVFGYTDLNGI 228
Query: 253 L-KGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGN 296
L +PI G LGD HAAL GQ C +PG+ K TYGTG ++ N G
Sbjct: 229 LPHPIPIHGVLGDSHAALFGQGCFEPGMIKVTYGTGSSVMMNIGE 273
>gnl|CDD|198363 cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a group of
putative bacterial glycerol kinases (GK), which may be
coded by the GK-like gene, GK2. Sequence comparison
shows members in this CD are homologs of Escherichia
coli GK. They retain all functionally important
residues, and may catalyze the Mg-ATP dependent
phosphorylation of glycerol to yield glycerol
3-phosphate (G3P). GKs belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 484
Score = 252 bits (646), Expect = 4e-81
Identities = 104/280 (37%), Positives = 146/280 (52%), Gaps = 21/280 (7%)
Query: 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEAC 70
+ AIDEGT++ + ++ G +VA +G +P GWVEQD I A V I C
Sbjct: 1 FILAIDEGTTNAKAVLVDR-DGTVVASGSAPVGIQYPQPGWVEQDAEAIWAAVQQAIADC 59
Query: 71 QFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDART-TSTLEK 129
G+ ++ A+ ++NQRES + WD+ TG PL + W RT +
Sbjct: 60 L----------AGVLAAEVAAIAISNQRESVVIWDRQTGAPLGPVLSWQCRRTAAACAAL 109
Query: 130 ILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIW 189
E ++ +A GLP+ P FSA K+ WL++ V Q R C+GTVD+W++W
Sbjct: 110 RAE----GHEPMVAARTGLPIDPMFSASKMRWLLDRVDDGPARAAQGRLCLGTVDSWLLW 165
Query: 190 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFV 249
NLTGG + TD SNA+RT L+++ +WDP L F IP LP + +S+ +GH
Sbjct: 166 NLTGGA---VFATDASNAARTQLLDLHGGQWDPQLLDLFGIPRAALPDVLASAGDFGHTR 222
Query: 250 SGPL--KGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTG 287
GVPI +GD HAAL G PG K+TYGTG
Sbjct: 223 GLGGLPDGVPILAMIGDSHAALFGHGAFAPGEVKATYGTG 262
>gnl|CDD|198366 cd07794, FGGY_GK_like_proteobact, Proteobacterial glycerol
kinase-like proteins; belongs to the FGGY family of
carbohydrate kinases. This subgroup corresponds to a
small group of proteobacterial glycerol kinase (GK)-like
proteins, including the glycerol kinase from Pseudomonas
aeruginosa. Most bacteria, such as Escherichia coli,
take up glycerol passively by facilitated diffusion. In
contrast, P. aeruginosa may also utilize a binding
protein-dependent active transport system to mediate
glycerol transportation. The glycerol kinase
subsequently phosphorylates the intracellular glycerol
to glycerol 3-phosphate (G3P). GKs belong to the FGGY
family of carbohydrate kinases, the monomers of which
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 470
Score = 243 bits (622), Expect = 1e-77
Identities = 112/287 (39%), Positives = 155/287 (54%), Gaps = 40/287 (13%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFS 73
AID+GT+S R +V GK + Q +P GWVE DP+E+LA + +EA
Sbjct: 5 AIDQGTTSTRVLVAGE-DGKAFILLALRHKQHYPNPGWVEHDPLELLANLRACLEAA--- 60
Query: 74 ACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKIL-- 131
+ A+G+ NQ ES +AWD +GEPL IVW D RT S LE++
Sbjct: 61 -------------GVVDAIGLANQGESCLAWDARSGEPLSPVIVWQDNRTESVLERLRAE 107
Query: 132 ---EVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWII 188
+V + GLPL YFSA K+ W++ N+P V+ A + R +GT D + +
Sbjct: 108 GAEAMVRART--------GLPLDAYFSASKLGWILRNLPAVRRAHRRGRLRLGTTDAFFL 159
Query: 189 WNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHF 248
LTG ++TDV+ ASRT LMN+ETL+WDP LC F +P++ LP I + G F
Sbjct: 160 DRLTG-----TFVTDVTTASRTSLMNLETLQWDPELCRLFGVPIECLPEIRPTV---GDF 211
Query: 249 VSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295
G + P++ + DQ A+L G C +PG AK T+GTG F L TG
Sbjct: 212 --GDIGCTPLTASIVDQQASLYGHGCRQPGDAKITFGTGAFALAITG 256
>gnl|CDD|215880 pfam00370, FGGY_N, FGGY family of carbohydrate kinases, N-terminal
domain. This domain adopts a ribonuclease H-like fold
and is structurally related to the C-terminal domain.
Length = 245
Score = 234 bits (598), Expect = 9e-77
Identities = 92/267 (34%), Positives = 131/267 (49%), Gaps = 28/267 (10%)
Query: 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEAC 70
V ID GT+S + IVF+ GK+VA P GW EQDP EI +A
Sbjct: 1 YVLGIDCGTTSTKAIVFNK-QGKVVASASAPYALISPKPGWAEQDPEEIW-------QAL 52
Query: 71 QFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKI 130
A + L++ GI P I +G++ Q + DK +PLY +I+W D RT +E +
Sbjct: 53 A-QAIRKILQQSGISPKQIKGIGISGQGHGLVLLDKN-DKPLYPAILWNDTRTAEIVENL 110
Query: 131 LEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWN 190
E + L + G + P F+ K+ WL + P++ E + ++ W
Sbjct: 111 KE---EGGADKLYEITGNTIWPGFTLSKLRWLKEHEPEIFERAR----KFLLIHDYLRWR 163
Query: 191 LTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGH--- 247
LTG ++ TD S+AS TM+ NI+TLEWD L IP D+LP + SSEIYG
Sbjct: 164 LTG-----QFTTDYSDASGTMMFNIKTLEWDEELLAILGIPPDLLPPLVESSEIYGTLNP 218
Query: 248 ---FVSGPLKGVPISGCLGDQHAALLG 271
+ G +G+P+ G GD AA LG
Sbjct: 219 EHAALFGLDEGIPVVGGGGDNQAAALG 245
>gnl|CDD|212658 cd00366, FGGY, FGGY family of carbohydrate kinases. This family is
predominantly composed of glycerol kinase (GK) and
similar carbohydrate kinases including rhamnulokinase
(RhuK), xylulokinase (XK), gluconokinase (GntK),
ribulokinase (RBK), and fuculokinase (FK). These enzymes
catalyze the transfer of a phosphate group, usually from
ATP, to their carbohydrate substrates. The monomer of
FGGY proteins contains two large domains, which are
separated by a deep cleft that forms the active site.
One domain is primarily involved in sugar substrate
binding, and the other is mainly responsible for ATP
binding. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain.
Substrate-induced conformational changes and a divalent
cation may be required for the catalytic activity.
Length = 435
Score = 212 bits (542), Expect = 5e-66
Identities = 86/287 (29%), Positives = 132/287 (45%), Gaps = 30/287 (10%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFS 73
+D GT+S + ++F G ++A+ ++P GWVEQDP EI +A
Sbjct: 4 GLDVGTTSVKAVLFD-EQGNILAEASREYEVSYPKPGWVEQDPEEIW-------QALC-- 53
Query: 74 ACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEV 133
+ + Q I A+GV++Q E I D G PL +I+W D+RT E++ E
Sbjct: 54 EVLREAAAQ-ASGGQIAAIGVSSQGEGVILVDA-NGRPLTPAILWQDSRTAEECERLEEQ 111
Query: 134 VPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTG 193
+ + GL P FS K+ WL + P++ D I TV ++ + LTG
Sbjct: 112 IGAD---EIYERTGLRPHPMFSGPKLLWLKEHRPEIYSKAD----KILTVADYLAYRLTG 164
Query: 194 GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGH------ 247
+++ D SNASRTML +I+T +WDP L IP ++LP + E+ G
Sbjct: 165 -----EFVIDYSNASRTMLFDIQTRDWDPELLEAAGIPRELLPEVVPPGEVAGAISAEAA 219
Query: 248 FVSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNT 294
+ G G P+ DQ A LG + G A + GT + +
Sbjct: 220 ALLGLPPGTPVVAGGHDQQCAALGAGAVDEGDAALSAGTSEVITAVS 266
>gnl|CDD|212665 cd07793, FGGY_GK5_metazoa, metazoan glycerol kinase 5-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a group of
metazoan putative glycerol kinases (GK), which may be
coded by the GK-like gene, GK5. Sequence comparison
shows members of this group are homologs of bacterial
GKs, and they retain all functionally important
residues. However, GK-like proteins in this family do
not have detectable GK activity. The reason remains
unclear. It has been suggested tha the conserved
catalytic residues might facilitate them performing a
distinct function. GKs belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 504
Score = 195 bits (497), Expect = 1e-58
Identities = 99/301 (32%), Positives = 151/301 (50%), Gaps = 30/301 (9%)
Query: 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQ 71
V A+D GT++ R ++ ++V + +P G+VE DP ++ + G I+
Sbjct: 2 VLALDVGTTTIRCFIYDRQ-AEVVGSSYDKIELLYPEPGYVEIDPDKLWTQIVGVIK--- 57
Query: 72 FSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDART-------- 123
E +K+ + I +G++ QR S + W+K TG+P +N I W D R
Sbjct: 58 -----EAVKDANLTAKQIAGLGISTQRGSFLTWNKSTGKPYHNFITWKDLRADELVKEWN 112
Query: 124 TSTLEKILEVVP------NKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNR 177
S L K + V ++K +LA L L++ W++ N P++K+A+ +
Sbjct: 113 NSLLMKAIRVASKVLHLLTRSKRFLAASV-LKFMNQHVTLRLLWVLQNNPELKKALKEGN 171
Query: 178 CCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPT 237
GT+DTW+++ LTGGK +++TDVSNAS T L + T+EW F IP ILP
Sbjct: 172 VLFGTIDTWLLYKLTGGK---EHVTDVSNASATGLFDPFTMEWSSWALSLFGIPSSILPK 228
Query: 238 ICSSSEIYGHFVSGPLKGV--PISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTG 295
+ +S +G L GV PI +GDQ AAL G C + G K T GTG F+ NTG
Sbjct: 229 VVDTSGDFGS-TDPELFGVPIPIRASVGDQQAALFGSCCFERGDVKITMGTGAFVNINTG 287
Query: 296 N 296
Sbjct: 288 P 288
>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate
transport and metabolism].
Length = 502
Score = 166 bits (421), Expect = 1e-47
Identities = 84/281 (29%), Positives = 132/281 (46%), Gaps = 30/281 (10%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFS 73
ID GT+S + ++F G++VA + + P GW EQDP E+ +EA +
Sbjct: 8 GIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDEL---WQAILEALR-- 62
Query: 74 ACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEV 133
+ L+E I+P I A+G++ Q + D GEPL +I+W D R +E++ E
Sbjct: 63 ---QLLEESKIDPDAIAAIGISGQGHGLVLLDA-NGEPLRPAILWNDTRAAEEVEELEER 118
Query: 134 VPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTG 193
+ L GL P F+A K+ WL N P + I + ++ + LT
Sbjct: 119 LG---GEALYARTGLQAMPGFTAPKLLWLKENEPDLFAKAA----KILLIKDYLRYRLT- 170
Query: 194 GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIP-MDILPTICSSSEIYGHFVS-- 250
G++ T++S+AS T L++I T +WD L +P D+LP + E+ G ++
Sbjct: 171 ----GEFATEISDASGTGLLDIRTRKWDWELLAALGLPERDLLPPVVEPGEVLGT-LTPE 225
Query: 251 -----GPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGT 286
G G P+ GD AA LG + PG S+ GT
Sbjct: 226 AAEELGLPAGTPVVVGGGDNAAAALGAGAVDPGDVSSSTGT 266
>gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
bacterial and archaeal xylulose kinases-like proteins
with similarity to bacterial D-xylulose kinases (XK,
also known as xylulokinase; EC 2.7.1.17), which catalyze
the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 492
Score = 153 bits (390), Expect = 3e-43
Identities = 82/285 (28%), Positives = 129/285 (45%), Gaps = 31/285 (10%)
Query: 15 IDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSA 74
ID GTSS + ++F L G+++A+ + P GW EQDP + E +
Sbjct: 5 IDIGTSSTKAVLFD-LDGEVLAQASREYELSTPQPGWAEQDPEVWW---DAVCEIIR--E 58
Query: 75 CVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVV 134
V K P++I A+GV+ Q + + DK G PL +I+++D R +E++ E +
Sbjct: 59 LVAKAGVD---PSEIKAIGVSGQGPTVVPVDK-DGRPLRPAIIYMDRRAKEEVEELKERI 114
Query: 135 PNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTGG 194
+ + G PL + A KI W N P+V E + +++I++ LTG
Sbjct: 115 GEEE---IFERTGNPLDSQYVAPKILWFKRNEPEVWERTRK----FLQSNSYIVYKLTG- 166
Query: 195 KDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVS---- 250
+ D S+AS + L +I EW L IP D+LP + +I G V+
Sbjct: 167 ----ELAVDHSSASGSGLYDIRKGEWSEELLDLLGIPEDLLPKLVRPGDIVGT-VTEEAA 221
Query: 251 ---GPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGT-GCFLL 291
G G P+ D AA LG ++PG A GT G ++
Sbjct: 222 EETGLPAGTPVVAGGADAAAAALGAGVVEPGDAMEMLGTSGVIIV 266
>gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like
D-xylulose kinases; a subgroup of the FGGY family of
carbohydrate kinases. This subgroup is predominantly
composed of bacterial D-xylulose kinases (XK, also known
as xylulokinase; EC 2.7.1.17), which catalyze the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. D-xylulose has been used as a source of carbon
and energy by a variety of microorganisms. Some
uncharacterized sequences are also included in this
subgroup. The prototypical member of this CD is
Escherichia coli xylulokinase (EcXK), which exists as a
dimer. Each monomer consists of two large domains
separated by an open cleft that forms an active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain. The presence of Mg2+ or Mn2+
is required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 482
Score = 131 bits (332), Expect = 5e-35
Identities = 82/287 (28%), Positives = 126/287 (43%), Gaps = 37/287 (12%)
Query: 15 IDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSA 74
ID GTS + ++ G++VA + P GW EQDP + EA + +A
Sbjct: 5 IDLGTSGVKALLVDE-DGEVVASASAEYPLSQPKPGWSEQDPEDW-------WEATK-AA 55
Query: 75 CVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVV 134
E L + GI ++ +G++ Q + DK G+ L +I+W D RTT+ E+I E V
Sbjct: 56 IRELLAKSGIAGGEVRGIGLSGQMHGLVLLDK-DGKVLRPAILWNDQRTTAECEEITERV 114
Query: 135 PNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTV----DTWIIWN 190
+ L P F+A K+ WL + P+ I V D ++ +
Sbjct: 115 G---GELIEITGNPAL-PGFTAPKLLWLREHEPENFAKIA-------KVLLPKD-YLRYR 162
Query: 191 LTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHF-- 248
LTG + TDVS+AS T+L+++ +W L I ILP + SSE+ G
Sbjct: 163 LTG-----EIATDVSDASGTLLLDVAKRDWSDELLDALGIDRAILPELYESSEVTGTLTA 217
Query: 249 ----VSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLL 291
G G P+ GD A +G ++PG A + GT +
Sbjct: 218 EAAAELGLPAGTPVVAGGGDNAAGAVGNGVVRPGDAFVSLGTSGVVF 264
>gnl|CDD|212662 cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This
subfamily consists of uncharacterized hypothetical
bacterial proteins with similarity to Escherichia coli
sugar kinase ygcE , whose functional roles are not yet
clear. Escherichia coli ygcE is recognized by this
model, but is not present in the alignment as it
contains a deletion relative to other members of the
group. These proteins belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 488
Score = 124 bits (314), Expect = 2e-32
Identities = 78/290 (26%), Positives = 123/290 (42%), Gaps = 40/290 (13%)
Query: 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTF-PTEGWVEQDPMEILAVVNGTIEA 69
V AID GT S R ++F G LVAK Q+ + + P GW EQDP + EA
Sbjct: 1 YVLAIDCGTQSVRALLFDR-QGNLVAKGQVPIEPYYSPKPGWAEQDP-DYYW--QALCEA 56
Query: 70 CQFSACVEKLKEQ-GIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLE 128
C+ +L EQ ++P I V +T QRE+ + DK G+PL +I+WLD R L
Sbjct: 57 CR------ELWEQIPVDPGRIAGVALTTQRETFVLLDK-DGKPLRPAILWLDQRAAEQLP 109
Query: 129 KILEVVPNKNKNYLAPLCGLP--LSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTW 186
L L G P + + K NW+ N P++ + + +
Sbjct: 110 P-----LAWWIRLLFKLIGKPETIDVIPAEAKANWIRENEPEIWAKTAK----FLLLSGY 160
Query: 187 IIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPML----CGFFTIPMDILPTICSSS 242
+ + LT G+++ V++ + + + W G F I + LP +
Sbjct: 161 LTYKLT-----GRFVDSVASQVGYIPFDYKKRRWAKKEDLKWQG-FPIEPEQLPELVPPG 214
Query: 243 EIYGHFV------SGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGT 286
++ G +G +G P+ D+ LG L+PG+A + GT
Sbjct: 215 KLIGTITAEAAEATGLPEGTPVIAGGSDKACETLGAGALEPGIACLSLGT 264
>gnl|CDD|198373 cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
proteins with similarity to bacterial D-Xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 514
Score = 123 bits (310), Expect = 7e-32
Identities = 73/288 (25%), Positives = 115/288 (39%), Gaps = 35/288 (12%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFS 73
AID GTS + + S G+LVA + + G EQDP + V + A +
Sbjct: 4 AIDLGTSGVKAALVS-PDGRLVASATEAYETHYLPGGGAEQDPEDWWDAV---VRATR-- 57
Query: 74 ACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEV 133
+E G+ P + + + Q + + D+ G PL +I+W+D R E+++E
Sbjct: 58 RLLEDS---GVNPRRVAGISFSGQMQGVVPVDE-DGRPLRPAIIWMDQRAAPEAERLMEG 113
Query: 134 VPNKNKNYLAPLC-------GLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTW 186
+ K Y L G P S KI WL +N P V + +
Sbjct: 114 LG-KVAGYGLKLLKWLRLTGGAPKSGKDPLAKILWLRDNEPDVYAKTYK----FLDAKDY 168
Query: 187 IIWNLTGGKDGGKYITDVSNASRTMLMNIET--LEWDPMLCGFFTIPMDILPTICSSSEI 244
+ LT G++ TD +AS T L + + W L I + LP + S+++
Sbjct: 169 LNLRLT-----GRFATDPDDASLTWLTDNRDGRIRWSEELLAAAGIDREKLPELVPSTDV 223
Query: 245 YGHFVS------GPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGT 286
G + G +G P+ GD AA +G + G A GT
Sbjct: 224 VGTVLPEAARELGLPEGTPVVAGGGDASAAAVGAGAVADGDAHLYLGT 271
>gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of bacterial D-xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. Some uncharacterized
sequences are also included in this subfamily. The
prototypical member of this subfamily is Escherichia
coli xylulokinase (EcXK), which exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. XKs do not have any known allosteric
regulators, and they may have weak but significant
activity in the absence of substrate. The presence of
Mg2+ or Mn2+ is required for catalytic activity. Members
of this subfamily belong to the FGGY family of
carbohydrate kinases.
Length = 482
Score = 121 bits (306), Expect = 2e-31
Identities = 86/282 (30%), Positives = 123/282 (43%), Gaps = 29/282 (10%)
Query: 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEAC 70
ID GTSS + + + L G+LVA + P GW EQDP + V +EA
Sbjct: 1 QYIGIDIGTSSVKASLVN-LDGELVAFASREYTTSSPHPGWSEQDPADWWDAVQRALEAL 59
Query: 71 QFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKI 130
L + G DI A+GVT Q + D+ G L +I+W D R+ + ++
Sbjct: 60 --------LDQAGDSAEDIAAIGVTGQMHGAVLLDQ-QGRVLRPAILWNDTRSAPEVTEL 110
Query: 131 LEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWN 190
+ + G +P ++ K+ WL N P+V I R + D +I
Sbjct: 111 KARLG---AEIFSIT-GNIPTPGWTLPKLLWLKENEPEVFRRIA--RVLLP-KD-YIRLR 162
Query: 191 LTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVS 250
LTG + TD S+AS T+L + + EW LC + IP D+LP + SEI G
Sbjct: 163 LTG-----ELATDRSDASGTLLFDAASREWSDDLCALYGIPEDLLPPLHEPSEIAGAVTP 217
Query: 251 ------GPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGT 286
G G P+ GD AA LG + PG A + GT
Sbjct: 218 EAARKTGLKAGTPVVAGAGDNAAAALGAGVVDPGQASLSLGT 259
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 117 bits (296), Expect = 5e-30
Identities = 74/289 (25%), Positives = 121/289 (41%), Gaps = 29/289 (10%)
Query: 15 IDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSA 74
ID GTS + ++ G+++A P GW EQDP + + T EA +
Sbjct: 3 IDLGTSGVKALLVDE-QGEVIASGSAPHTVISPHPGWSEQDPEDWW---DATEEAIK--- 55
Query: 75 CVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVV 134
E L++ DI +G++ Q + D GE L +I+W D RT E++ +
Sbjct: 56 --ELLEQASEMGQDIKGIGISGQMHGLVLLDA-NGEVLRPAILWNDTRTAQECEELEAEL 112
Query: 135 PNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTGG 194
++ + + G P F+A K+ W+ + P+V I + + ++ + LTG
Sbjct: 113 GDER---VLEITGNLALPGFTAPKLLWVRKHEPEVFARIAK----VMLPKDYLRYRLTG- 164
Query: 195 KDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVS---- 250
+Y+T+ S+AS T ++ W L +P LP + SSE G
Sbjct: 165 ----EYVTEYSDASGTGWFDVAKRAWSKELLDALDLPESQLPELIESSEKAGTVRPEVAA 220
Query: 251 --GPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGT-GCFLLYNTGN 296
G GVP++ GD A +G + PG A + GT G
Sbjct: 221 RLGLSAGVPVAAGGGDNAAGAIGTGTVDPGDAMMSLGTSGVVYAVTDKP 269
>gnl|CDD|212659 cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
composed of a group of gluconate kinases (GntK, also
known as gluconokinase; EC 2.7.1.12) encoded by the gntK
gene, which catalyzes the ATP-dependent phosphorylation
of D-gluconate and produce 6-phospho-D-gluconate and
ADP. The presence of Mg2+ might be required for
catalytic activity. The prototypical member of this
subfamily is GntK from Lactobacillus acidophilus. Unlike
Escherichia coli GntK, which belongs to the superfamily
of P-loop containing nucleoside triphosphate hydrolases,
members in this subfamily are homologous to glycerol
kinase, xylulose kinase, and rhamnulokinase from
Escherichia coli. They have been classified as members
of the FGGY family of carbohydrate kinases, which
contain two large domains separated by a deep cleft that
forms the active site. This model spans both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Some uncharacterized homologous sequences are also
included in this subfamily. The Lactobacillus gnt operon
contains a single gntK gene. The gnt operons of some
bacteria, such as Corynebacterium glutamicum, have two
gntK genes. For example, the C. glutamicum gnt operon
has both a gluconate kinase gntV gene (also known as
gntK) and a second hypothetical gntK gene (also known as
gntK2). Both gluconate kinases encoded by these genes
belong to this family, however the protein encoded by C.
glutamicum gntV is not included in this model as it is
truncated in the C-terminal domain.
Length = 440
Score = 109 bits (274), Expect = 4e-27
Identities = 78/282 (27%), Positives = 117/282 (41%), Gaps = 36/282 (12%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFS 73
+D GT+S + ++F G++VA P +G EQDP EI F
Sbjct: 4 GVDIGTTSTKAVLFDE-DGRIVAGVSKRYPLETPPDGAAEQDPDEI------------FD 50
Query: 74 ACVEKLKE--QGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKIL 131
A +E L E I AV ++ S IA D+ GEPL I W D R E++
Sbjct: 51 AVLEILDEVVAKALGGRIAAVSFSSAMHSLIALDED-GEPLTPVITWADTRAAEYAEELK 109
Query: 132 EVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKV-KEAIDQNRCCIGTVDTWIIWN 190
E + + Y G PL P + K+ WL P++ +A ++ ++++
Sbjct: 110 ER-LDGRELYQR--TGCPLHPMYPLAKLLWLKEERPELFAKA-----AKFVSIKEYVLYR 161
Query: 191 LTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEI-YGHFV 249
L G + + D S AS T L+NI TL+WD I + LP + ++E G
Sbjct: 162 LFG-----ELVVDYSIASGTGLLNIHTLDWDEEALEIAGISEEQLPELVPTTEQLRGLKA 216
Query: 250 S-----GPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGT 286
G + P D + LG + PG+A T GT
Sbjct: 217 ERAPKLGLPEDTPFVLGASDGALSNLGVGAVDPGVAAITIGT 258
>gnl|CDD|212666 cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
composed of bacterial L-xylulose kinases (L-XK, also
known as L-xylulokinase; EC 2.7.1.53), which catalyze
the ATP-dependent phosphorylation of L-xylulose to
produce L-xylulose 5-phosphate and ADP. The presence of
Mg2+ might be required for catalytic activity. Some
uncharacterized sequences are also included in this
subfamily. L-XKs belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 447
Score = 104 bits (263), Expect = 1e-25
Identities = 75/283 (26%), Positives = 121/283 (42%), Gaps = 32/283 (11%)
Query: 15 IDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSA 74
ID GT+ + ++F L G+ +A P G+VEQD E+ V I
Sbjct: 5 IDAGTTVTKAVLF-DLDGREIAVASRRNPTLTPQPGYVEQDMDELWEAVAAVIREL---- 59
Query: 75 CVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVV 134
+EK G++ DI +GVT Q + DK G+P+ I+ LD+R +E+ E
Sbjct: 60 -LEKA---GVDAEDIAGIGVTGQGDGLWLVDK-EGKPVGPGILSLDSRAAELVERWQE-- 112
Query: 135 PNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTGG 194
+ ++ + L G L + + WL + P+ + WI + LT
Sbjct: 113 -DGTEDAIFELTGQGLWAGQPSSLLAWLKEHEPERLARAG----TVLFCKDWIRFRLT-- 165
Query: 195 KDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIP--MDILPTICSSSEIYGHFVS-- 250
G+ TD ++AS + L+++ T ++D L + D+LP I S++I G ++
Sbjct: 166 ---GEAATDPTDASGSSLLDLRTGQYDDELLDLLGLEEIRDLLPPIVDSADIVGT-LTAE 221
Query: 251 -----GPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGC 288
G G P+ G L D A LG + G S GT
Sbjct: 222 AAALTGLPAGTPVVGGLFDVVACALGSGLVDEGDLCSIAGTWS 264
>gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY
family of carbohydrate kinases. This subfamily is
composed of uncharacterized carbohydrate kinases. They
are sequence homologous to bacterial glycerol kinase and
have been classified as members of the FGGY family of
carbohydrate kinases. The monomers of FGGY proteins
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 430
Score = 103 bits (259), Expect = 4e-25
Identities = 71/249 (28%), Positives = 108/249 (43%), Gaps = 32/249 (12%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTE---GWVEQDPMEILAVVNGTIEAC 70
ID GT++ + +VF G ++A + P G DP E+ + I
Sbjct: 4 GIDVGTTNTKVVVFD-DDGTIIAIRKFKT----PKNVSDGGPYFDPDELWRAIEKVICQA 58
Query: 71 QFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKI 130
+A P I A+ +T+ ES + D GEPLY +I W D RT E++
Sbjct: 59 LAAA-----------PDPIAAISITSVGESGVLVDA-DGEPLYPAIAWYDRRTEEEAEEL 106
Query: 131 LEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWN 190
+ P + + GLP P +S KI WL + P+V + + I +I++
Sbjct: 107 RKQDPGLA---IYEITGLPPDPIYSLFKILWLREHRPEVWKRAYK-WLHIPD---YILFR 159
Query: 191 LTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVS 250
LTG + +TD + ASRT+L +I EW L F IP D LP + S I G
Sbjct: 160 LTG-----RPVTDFTLASRTLLFDIRAREWSEELLEMFGIPPDALPELVPSGTIIGEVSK 214
Query: 251 GPLKGVPIS 259
+ + +S
Sbjct: 215 DAAESLGLS 223
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 92.4 bits (230), Expect = 4e-21
Identities = 72/290 (24%), Positives = 121/290 (41%), Gaps = 39/290 (13%)
Query: 11 LVGAIDEGTSSCRFIVFSALTGKLV----AKHQISLGQTFPTEGWVEQDPMEILAVVNGT 66
L +D GT S + IV A TG+++ A H++ + G EQ P
Sbjct: 1 LYLGVDCGTQSTKVIVLDAETGEVLAEGSAPHEL----ISGSNGRREQQP-------QWW 49
Query: 67 IEACQFSACVEK-LKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTS 125
I+A + L + GI+P ++ A+GV+ Q+ + D GE L + +W D T
Sbjct: 50 IDA--LVEAFRQALADAGIDPKEVRAIGVSGQQHGLVPLDA-QGEVLRPAKLWCDTETAP 106
Query: 126 TLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDT 185
+++E + K ++ L G ++A K+ WL + P+ I I
Sbjct: 107 ENAELIEKL-GGAKAWIERL-GNAPLTGYTASKLLWLKEHEPENFAKIAT----ILLPHD 160
Query: 186 WIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFF---TIPMDILPTICSSS 242
++ + LTG +Y+T+ +AS T ++ T EW + D LPT+ S
Sbjct: 161 YLNFWLTG-----RYVTEYGDASGTGYFDVRTREWSEEVLDAIDPALDLADALPTLLSPD 215
Query: 243 EIYGHFVSGPLKGVPIS-GCL-----GDQHAALLGQNCLKPGLAKSTYGT 286
E G + + +S L GD +G +KPG+ + GT
Sbjct: 216 EPAGTVRPEAAEALGLSGDVLVASGGGDNMMGAIGTGNVKPGVVTMSLGT 265
>gnl|CDD|130381 TIGR01314, gntK_FGGY, gluconate kinase, FGGY type. Gluconate is
derived from glucose in two steps. This model describes
one form of gluconate kinase, belonging to the FGGY
family of carbohydrate kinases. Gluconate kinase
phosphoryates gluconate for entry into the
Entner-Douderoff pathway [Energy metabolism, Sugars].
Length = 505
Score = 91.1 bits (226), Expect = 1e-20
Identities = 78/278 (28%), Positives = 109/278 (39%), Gaps = 29/278 (10%)
Query: 15 IDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSA 74
+D GT+S + ++F GK+VAK I P G E++P EI V TI
Sbjct: 5 VDIGTTSTKAVLFEE-NGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIR------ 57
Query: 75 CVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVV 134
++ + +I+ V + Q S IA+D+ +PL I W D R E+I E
Sbjct: 58 ---EVSINLEDEDEILFVSFSTQMHSLIAFDE-NWQPLTRLITWADNRAVKYAEQIKES- 112
Query: 135 PNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTGG 194
KN + G P+ P KI WL P I Q + +I L G
Sbjct: 113 --KNGFDIYRRTGTPIHPMAPLSKIIWLEAEHPD----IYQKAAKYLEIKGYIFQRLFG- 165
Query: 195 KDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHF------ 248
Y D S AS T + N+ L+WD I LP + ++EI +
Sbjct: 166 ----TYKIDYSTASATGMFNLFELDWDKEALELTGIKESQLPKLVPTTEIEENLPHEYAK 221
Query: 249 VSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGT 286
G P D + LG N +K G A T GT
Sbjct: 222 KMGIQSSTPFVIGASDGVLSNLGVNAIKKGEAAVTIGT 259
>gnl|CDD|198377 cd07811, FGGY_D-XK_3, D-xylulose kinases, subgroup 3; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of proteobacterial D-xylulose kinases (XK,
also known as xylulokinase; EC 2.7.1.17). They share
high sequence similarity with Escherichia coli
xylulokinase (EcXK), which catalyzes the rate-limiting
step in the ATP-dependent phosphorylation of D-xylulose
to produce D-xylulose 5-phosphate (X5P) and ADP. Some
uncharacterized sequences are also included in this
subfamily. EcXK exists as a dimer. Each monomer consists
of two large domains separated by an open cleft that
forms an active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
The presence of Mg2+ or Mn2+ might be required for
catalytic activity. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 493
Score = 86.1 bits (213), Expect = 8e-19
Identities = 77/286 (26%), Positives = 112/286 (39%), Gaps = 33/286 (11%)
Query: 14 AIDEGTSSCRFIVFSALT---GKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEAC 70
AID GT S R +AL G +VA QT P GW EQ P++ I
Sbjct: 4 AIDVGTGSTR----AALVRIDGAIVAFAAREHEQTVPQFGWSEQRPLDWWQGACDCIRE- 58
Query: 71 QFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKI 130
A V E+ I +G Q T+ D + +W D RT ++
Sbjct: 59 -VLARVPGAAER------IAVIGACGQMHGTVLLDDAGELTRDTAPLWNDKRTQPQVDAF 111
Query: 131 LEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWN 190
N + YLA L P +P + A K+ W N P +A + + D +I +
Sbjct: 112 --EARNGWEKYLAHLANPP-APAWPAFKLAWWRENDP---QAYSRLAKVLMPKD-YINFM 164
Query: 191 LTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFV- 249
LTG TD + AS + LM+ T W C + +D+LP + +I G
Sbjct: 165 LTG-----AMATDRTEASCSFLMDPATRSWSSQACETMGLDVDLLPPLRLPLDIIGQVTQ 219
Query: 250 -----SGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFL 290
+G G+P+ D ALLG +PG+ + GT +
Sbjct: 220 PAADLTGLPAGIPVLVGASDYAMALLGSGVCEPGMGSDSTGTSTIV 265
>gnl|CDD|198353 cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
composed of bacterial autoinducer-2 (AI-2) kinases and
similar proteins. AI-2 is a small chemical
quorum-sensing signal involved in interspecies
communication in bacteria. Cytoplasmic autoinducer-2
kinase, encoded by the lsrK gene from Salmonella
enterica serovar Typhimurium lsr (luxS regulated)
operon, is the prototypical member of this subfamily.
AI-2 kinase catalyzes the phosphorylation of
intracellular AI-2 to phospho-AI-2, which leads to the
inactivation of lsrR, the repressor of the lsr operon.
Members of this family are homologs of glycerol
kinase-like proteins and belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 452
Score = 82.9 bits (205), Expect = 7e-18
Identities = 58/239 (24%), Positives = 99/239 (41%), Gaps = 30/239 (12%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDP-----MEILAVVNGTIE 68
A D GT S R ++F LTG QI++ Q E +P M+ VN +
Sbjct: 4 AFDAGTGSVRAVIFD-LTGN-----QIAVSQE---EWEHLAEPRYPGSMDFDPQVNWKL- 53
Query: 69 ACQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLE 128
C+ + L GI P DI AV T+ RE + +D+ G ++ + +DAR +
Sbjct: 54 VCR--CIRQALARSGIAPIDIAAVSATSMREGIVLYDQ-NGNEIW-ACANVDARAAEEVR 109
Query: 129 KILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWII 188
++ E P+ K + ++ WL + P + E + + WI+
Sbjct: 110 ELKEWEPDLEKEIYRSSGQTF--ALGALPRLLWLKQHRPDIYEKTAS----VTMISDWIL 163
Query: 189 WNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGH 247
+ L+G + SNA T L +++T +W P + + DI P + + + G
Sbjct: 164 YKLSG-----VLAVEPSNAGTTGLFDLKTRDWSPEMLDIVGLRDDIFPPVVETGTVIGT 217
>gnl|CDD|212661 cd07777, FGGY_SHK_like, sedoheptulokinase-like proteins; a
subfamily of the FGGY family of carbohydrate kinases.
This subfamily is predominantly composed of
uncharacterized bacterial and eukaryotic proteins with
similarity to human sedoheptulokinase (SHK, also known
as D-altro-heptulose or heptulokinase, EC 2.7.1.14)
encoded by the carbohydrate kinase-like (CARKL/SHPK)
gene. SHK catalyzes the ATP-dependent phosphorylation of
sedoheptulose to produce sedoheptulose 7-phosphate and
ADP. The presence of Mg2+ or Mn2+ might be required for
catalytic activity. Members of this subfamily belong to
the FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 448
Score = 69.3 bits (170), Expect = 3e-13
Identities = 65/278 (23%), Positives = 113/278 (40%), Gaps = 44/278 (15%)
Query: 10 PLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWV--EQDPMEILAVVNGTI 67
V ID GT+S + + + T +++A P++G + EQD +IL+ ++
Sbjct: 1 MYVLGIDIGTTSVKACLLDSETKEVLASQSKPTSANVPSDGPLGSEQDVDKILSTLD--- 57
Query: 68 EACQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDK-----------ITGEPLYNSI 116
+C+++L ++ ++ + A+GVT Q + W + IT P+ N
Sbjct: 58 ------SCLKRLPKELLK--KVKAIGVTGQMHGIVLWKQDQSCEDGDLISITNTPVSNLY 109
Query: 117 VWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQN 176
W D R + K L P P LP+ F + WL N P E ++
Sbjct: 110 TWQDGRCSEDFLKSL---PK-------PQSHLPIHTGFGCATLFWLQKNGP---EFLESF 156
Query: 177 RCCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILP 236
C GT+ +++ L G + NA+ ++ET W+ + P+ +LP
Sbjct: 157 DHC-GTIQDFVVAMLCGLSRP---VMSPHNAASWGYFDLETNAWNSEILQAAGFPVHLLP 212
Query: 237 TICSSSEIYG---HFVSGPLKGVPISGCLGDQHAALLG 271
+ I G G KG P+ LGD ++L
Sbjct: 213 EVVPPGTIAGTLGGDWYGIPKGTPVGVALGDLQCSVLA 250
>gnl|CDD|198346 cd07768, FGGY_RBK_like, Ribulokinase-like carbohydrate kinases; a
subfamily of the FGGY family of carbohydrate kinases.
This subfamily is composed of ribulokinases (RBKs) and
similar proteins from bacteria and eukaryota. RBKs
catalyze the MgATP-dependent phosphorylation of a
variety of sugar substrates including L- and/or
D-ribulose. Members of this subfamily contain two large
domains separated by a deep cleft that forms the active
site. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain. Members of this
subfamily belong to the FGGY family of carbohydrate
kinases.
Length = 465
Score = 65.6 bits (160), Expect = 5e-12
Identities = 50/185 (27%), Positives = 73/185 (39%), Gaps = 19/185 (10%)
Query: 10 PLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTE-GWVEQDPMEILAVVNGTIE 68
V +D GT S R VF L G+ +A P GW EQDP + V +
Sbjct: 1 KYVIGVDVGTESVRAGVFD-LNGRELASASRPYPVPVPYGAGWAEQDPEDWWPAVRTAVR 59
Query: 69 ACQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLE 128
A + G++P + A+GV + + D G+PL +++W D R
Sbjct: 60 AA--------VAAAGVDPDQVAALGVDATSCTVVPLDA-EGQPLTPALLWDDHRAADQAN 110
Query: 129 KILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWII 188
I EV +Y G +SP + K+ WL+ P D + D W+
Sbjct: 111 AINEVGGPALWDYG----GKIVSPEWMLPKVLWLLQEAPDTWNRADH---FLEAPD-WLG 162
Query: 189 WNLTG 193
W LTG
Sbjct: 163 WRLTG 167
>gnl|CDD|198376 cd07810, FGGY_D-XK_2, D-xylulose kinases, subgroup 2; members of
the FGGY family of carbohydrate kinases. This subgroup
is predominantly composed of bacterial D-xylulose
kinases (XK, also known as xylulokinase; EC 2.7.1.17).
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. EcXK exists as a dimer. Each monomer consists
of two large domains separated by an open cleft that
forms an active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
The presence of Mg2+ or Mn2+ might be required for
catalytic activity. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 490
Score = 65.1 bits (159), Expect = 7e-12
Identities = 85/292 (29%), Positives = 125/292 (42%), Gaps = 53/292 (18%)
Query: 15 IDEGTSSCRFIVFSALTGKLVAKHQI---SLGQTFPTEGWVEQDP-MEILAVVNGTIEAC 70
D G+SS + + A TGK +A + P GW EQDP + T
Sbjct: 5 YDIGSSSIKAALVDAETGKSLASVSYPEQEMEILSPQPGWAEQDPEIWWDYTCAAT---- 60
Query: 71 QFSACVEKLKEQGIE-PTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEK 129
++L QG E ++I A+G++ Q + DK G L +I+W D+R S EK
Sbjct: 61 ------KQLINQGKEDLSNIQAIGISYQMHGLVLVDK-QGNVLRPAIIWCDSRAVSIGEK 113
Query: 130 ILEVVPNKNKNY-LAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWII 188
+ +++ L+ L P + F+A K+ W+ N P+V + I + I +I
Sbjct: 114 AFQ---ELGEDFCLSHLLNSPGN--FTASKLAWVKENEPEVFDRIAK----IMLPGDYIA 164
Query: 189 WNLTGGKDGGKYITDVSNASRTMLMN-------IETLEW---DPMLCGFFTIPMDILPTI 238
LTG + T S S ML + +E LE+ D L IP DI+P
Sbjct: 165 MKLTG-----EVTTTKSGLSEGMLWDFKKNEVAVELLEYLGLDRSL-----IP-DIVPNF 213
Query: 239 CS----SSEIYGHFVSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGT 286
+SEI G +G+PI+ GDQ L N L PG +T GT
Sbjct: 214 SEQGTVTSEIAA--ELGLSEGIPITYRAGDQPNNALSLNVLNPGEVAATAGT 263
>gnl|CDD|182853 PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; Provisional.
Length = 520
Score = 63.9 bits (156), Expect = 2e-11
Identities = 77/282 (27%), Positives = 121/282 (42%), Gaps = 48/282 (17%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQ-DP-----MEILAVVNGTI 67
A+D GT S R ++F L G QI++GQ W P ME N +
Sbjct: 7 ALDAGTGSIRAVIFD-LNGN-----QIAVGQ----AEWRHLAVPDVPGSMEFDLEKNWQL 56
Query: 68 EACQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVW----LDART 123
ACQ + L++ GI +DI AV T+ RE + +D+ G + W +DAR
Sbjct: 57 -ACQ--CIRQALQKAGIPASDIAAVSATSMREGIVLYDR-NGTEI-----WACANVDARA 107
Query: 124 TSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSAL-KINWLMNNVPKVKEAIDQNRCCIGT 182
+ + ++ E+ N + G L+ AL ++ WL ++ P + I
Sbjct: 108 SREVSELKELHNNFEEEVYR-CSGQTLA--LGALPRLLWLAHHRPDIYRQAHT----ITM 160
Query: 183 VDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSS 242
+ WI + L+G + D SNA T L+++ T +WDP L + DILP + +
Sbjct: 161 ISDWIAYMLSG-----ELAVDPSNAGTTGLLDLVTRDWDPALLEMAGLRADILPPVKETG 215
Query: 243 EIYGHFV------SGPLKGVPISGCLGDQHAALLGQNCLKPG 278
+ GH +G G P+ GD LG ++PG
Sbjct: 216 TVLGHVTAKAAAETGLRAGTPVVMGGGDVQLGCLGLGVVRPG 257
>gnl|CDD|198360 cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase and
ribulose-phosphate 3-epimerase fusion proteins-like;
belongs to the FGGY family of carbohydrate kinases.
This subgroup is composed of uncharacterized proteins
with similarity to carbohydrate kinases. Some members
are carbohydrate kinase and ribulose-phosphate
3-epimerase fusion proteins. Carbohydrate kinases
catalyze the ATP-dependent phosphorylation of their
carbohydrate substrate to produce phosphorylated sugar
and ADP. The presence of Mg2+ is required for catalytic
activity. This subgroup shows high homology to
characterized ribulokinases and belongs to the FGGY
family of carbohydrate kinases, the monomers of which
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 484
Score = 63.9 bits (156), Expect = 2e-11
Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 10 PLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEA 69
P V ID GT S R +F TG+ + G T P GW EQ+P + EA
Sbjct: 1 PYVLGIDGGTESVRAGLF-DTTGRPLGSAAAPYGTTHPRPGWAEQNPED-------WWEA 52
Query: 70 CQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEK 129
+A E L E GI D+ A+ + +A D G PL +I+W+D R +
Sbjct: 53 LG-AAVREALAEAGIAAPDVAALCCDTTCCTVVALDA-AGTPLRPAILWMDVRAAEEAAR 110
Query: 130 IL 131
+L
Sbjct: 111 VL 112
>gnl|CDD|223995 COG1069, AraB, Ribulose kinase [Energy production and conversion].
Length = 544
Score = 62.0 bits (151), Expect = 8e-11
Identities = 47/200 (23%), Positives = 70/200 (35%), Gaps = 50/200 (25%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQ--ISLGQTFPTEGWVEQDPMEILAVVNGTIEACQ 71
+D GT S R VF TG L+A+ + Q P EQ + V +
Sbjct: 7 GVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQ--PGSNLAEQHSRDYWEAVCAAVRDV- 63
Query: 72 FSACVEKLKEQGIEPTDIVAVGV--TNQRESTIAWDKITGEPLYNS---------IVWLD 120
+ + G++P D+V +GV T ++ G PL I+W+D
Sbjct: 64 -------VAKAGVDPADVVGIGVDAT----CSLVVIDRDGNPLAVLPEFPNNPNVILWMD 112
Query: 121 AR-------TTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAI 173
R +T +L+ K +SP K+ WL P V E
Sbjct: 113 HRAVEEAEEINATCHPVLDYYGGK------------ISPEMMIPKLMWLKREAPAVWERA 160
Query: 174 DQNRCCIGTVDTWIIWNLTG 193
I + W+ W LTG
Sbjct: 161 AH----IFDLADWLTWKLTG 176
>gnl|CDD|184987 PRK15027, PRK15027, xylulokinase; Provisional.
Length = 484
Score = 56.1 bits (135), Expect = 6e-09
Identities = 63/277 (22%), Positives = 114/277 (41%), Gaps = 31/277 (11%)
Query: 15 IDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSA 74
ID GTS + I+ + G++VA L + P W EQDP + + ++A
Sbjct: 5 IDLGTSGVKVILLNE-QGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKA----- 58
Query: 75 CVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVV 134
L +Q D+ A+G+ Q D L +I+W D R + V
Sbjct: 59 ----LGDQH-SLQDVKALGIAGQMHGATLLDA-QQRVLRPAILWNDGRCAQECALLEARV 112
Query: 135 PNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTGG 194
P + G + P F+A K+ W+ + P++ ID+ + ++ +TG
Sbjct: 113 PQSRV-----ITGNLMMPGFTAPKLLWVQRHEPEIFRQIDK----VLLPKDYLRLRMTG- 162
Query: 195 KDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVSG--- 251
++ +D+S+A+ TM +++ +W ++ + D +P + SEI G +
Sbjct: 163 ----EFASDMSDAAGTMWLDVAKRDWSDVMLQACHLSRDQMPALYEGSEITGALLPEVAK 218
Query: 252 --PLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGT 286
+ VP+ GD A +G + A + GT
Sbjct: 219 AWGMATVPVVAGGGDNAAGAVGVGMVDANQAMLSLGT 255
>gnl|CDD|198358 cd07781, FGGY_RBK, Ribulokinases; belongs to the FGGY family of
carbohydrate kinases. This subgroup is predominantly
composed of bacterial ribulokinases (RBK) which catalyze
the MgATP-dependent phosphorylation of L(or D)-ribulose
to produce L(or D)-ribulose 5-phosphate and ADP. RBK
also phosphorylates a variety of other sugar substrates
including ribitol and arabitol. The reason why L-RBK can
phosphorylate so many different substrates is not yet
clear. The presence of Mg2+ is required for catalytic
activity. This group belongs to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 498
Score = 55.3 bits (134), Expect = 1e-08
Identities = 69/306 (22%), Positives = 103/306 (33%), Gaps = 69/306 (22%)
Query: 15 IDEGTSSCRFIVFSALTGKLVAKH-------QISLGQTFPTEGWVEQDP---MEILAVVN 64
+D GT S R ++ TG +A + Q P +E L
Sbjct: 6 LDFGTLSVRALLVDTETGAELASAVVEYPHGVMGEYLPDLPPNQALQHPADYIEGLET-- 63
Query: 65 GTIEACQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLY---------NS 115
A E LKE G++P D+V +GV + I D+ G PL ++
Sbjct: 64 ---------AIPEVLKEAGVDPDDVVGIGVDTTGSTPIPVDE-DGTPLCLLPEFKNNPHA 113
Query: 116 IVWL--DARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAI 173
V L D ++I + + ++YL G+ S +F KI ++ P+V EA
Sbjct: 114 YVKLWKDHTAQKEADRITALAHERGEDYLRYYGGVYSSEWFWP-KILHVLREAPEVYEAA 172
Query: 174 DQ--NRCCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCG----- 226
D C D WI LTG D K A + W G
Sbjct: 173 DSWVEAC-----D-WIPAQLTGTTDPKKLKRSRCAAGHKAM-------WHEEWGGLPSDE 219
Query: 227 FFTIPMDILP--------TICSSSEIYGHFVS------GPLKGVPISGCLGDQHAALLGQ 272
F + L I +S E G G +G+ ++ D H +G
Sbjct: 220 FLSALDPKLAGVRDKLSGPIYTSGEKAGGLSPEWAARLGLPEGIAVAVGAFDAHMGAVGA 279
Query: 273 NCLKPG 278
+PG
Sbjct: 280 GA-EPG 284
>gnl|CDD|198349 cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of bacterial L-rhamnulose kinases
(RhuK, also known as rhamnulokinase; EC 2.7.1.5), which
are encoded by the rhaB gene and catalyze the
ATP-dependent phosphorylation of L-rhamnulose to produce
L-rhamnulose-1-phosphate and ADP. Some uncharacterized
homologous sequences are also included in this
subfamily. The prototypical member of this subfamily is
Escherichia coli RhuK, which exists as a monomer
composed of two large domains. The ATP binding site is
located in the cleft between the two domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of divalent Mg2+ or Mn2+
is required for catalysis. Although an intramolecular
disulfide bridge is present in Rhuk, disulfide formation
is not important to the regulation of RhuK enzymatic
activity. Members of this subfamily belong to the FGGY
family of carbohydrate kinases.
Length = 440
Score = 52.5 bits (127), Expect = 9e-08
Identities = 58/250 (23%), Positives = 94/250 (37%), Gaps = 58/250 (23%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAK--HQISLGQTFPTEGWVEQDPM--EILAVVNGTIEA 69
A+D G SS R I+ S GKL + H+ FP + +IL + E
Sbjct: 4 AVDLGASSGRVILGSLDGGKLTLEEVHR------FPNGPVRVNGHLYWDILRLYQEIKEG 57
Query: 70 CQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAW-------DKITGEPLYNSIVWLDAR 122
++K EQG I ++G+ W DK GE L N + D R
Sbjct: 58 ------LKKAAEQGGA---IDSIGID-------TWGVDFGLLDK-DGELLGNPYHYRDPR 100
Query: 123 TTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGT 182
T +E++ E +P K L G+ P+ N + ++ + +
Sbjct: 101 TDGVMEEVFERIP---KEELYERTGIQFMPF----------NTLYQLYALKKEGPELLEK 147
Query: 183 VDTW------IIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILP 236
D + + LT G + + +NAS T L++ T +WD L IP ++ P
Sbjct: 148 ADKLLMIPDLLNYLLT-----GVKVNEYTNASTTQLLDPRTRDWDTELLEKLGIPEELFP 202
Query: 237 TICSSSEIYG 246
+ + G
Sbjct: 203 PLVEPGTVLG 212
>gnl|CDD|198369 cd07798, FGGY_AI-2K_like, Autoinducer-2 kinase-like proteins;
belongs to the FGGY family of carbohydrate kinases.
This subgroup consists of uncharacterized hypothetical
bacterial proteins with similarity to bacterial
autoinducer-2 (AI-2) kinases, which catalyzes the
phosphorylation of intracellular AI-2 to phospho-AI-2,
leading to the inactivation of lsrR, the repressor of
the lsr operon. Members of this subgroup belong to the
FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 437
Score = 52.2 bits (125), Expect = 1e-07
Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 17/159 (10%)
Query: 88 DIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVVPNKNKNYLAPLCG 147
++ + T+QR+ + +K+ G+ + + +D R I +++ + G
Sbjct: 69 PVIGITSTSQRQGIVLINKV-GKA-FLGLPNIDNRGREWEAGI------EDREEIYEKTG 120
Query: 148 LPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTGGKDGGKYITDVSNA 207
+ FSA K+ L P + I + I ++ W+ L+G + + S A
Sbjct: 121 RLPTALFSAAKLMGLKKRQPSLWAGIAK----ITSISDWVTEMLSG-----ILVYEPSQA 171
Query: 208 SRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYG 246
T+L ++E+ EW LCG F I MDILP + + G
Sbjct: 172 CETLLFDVESKEWSERLCGIFGISMDILPELVRAGTSLG 210
>gnl|CDD|233356 TIGR01315, 5C_CHO_kinase, FGGY-family pentulose kinase. This model
represents a subfamily of the FGGY family of
carbohydrate kinases. This subfamily is closely related
to a set of ribulose kinases, and many members are
designated ribitol kinase. However, the member from
Klebsiella pneumoniae, from a ribitol catabolism operon,
accepts D-ribulose and to a lesser extent D-arabinitol
and ribitol (PMID:9639934 and JW Lengeler, personal
communication); its annotation in GenBank as ribitol
kinase is imprecise and may have affected public
annotation of related proteins.
Length = 541
Score = 51.8 bits (124), Expect = 2e-07
Identities = 64/279 (22%), Positives = 101/279 (36%), Gaps = 42/279 (15%)
Query: 15 IDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSA 74
+D GT S R + TG ++A ++ P+ G Q + I + C
Sbjct: 5 VDVGTGSARACII-DSTGDILALAAQNIKTWTPSSGLEGQSSVYIWQAI------CN--- 54
Query: 75 CVEK-LKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPL---------YNSIVWLDARTT 124
CV++ L E ++P + +G + S + GEPL N I+W+D R
Sbjct: 55 CVKQVLAESKVDPNSVKGIGF-DATCSLVVLTH-DGEPLPVSKNGGADQNIILWMDHRAL 112
Query: 125 STLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVD 184
+ EKI N + L G +S K+ WL NN+P RC +
Sbjct: 113 AEAEKI-----NATNHNLLRYVGGKMSVEMEIPKVLWLKNNMPPELF----ARCKFFDLT 163
Query: 185 TWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEI 244
++ W TG + V + ++ W + TI + L T +
Sbjct: 164 DFLTWRATG--KEIRSFCSVVCKWGFVPVDGSNKGWQEDF--YETIGLGELVT--DNFIR 217
Query: 245 YGHFVSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKST 283
G P G + G L + A LG L G A +
Sbjct: 218 MGGSWMSP--GELVGGGLTAEAAQELG---LPAGTAVGS 251
>gnl|CDD|212663 cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis
carbohydrate kinase-like subgroup; belongs to the FGGY
family of carbohydrate kinases. This subgroup is
composed of the uncharacterized Yersinia
Pseudotuberculosis carbohydrate kinase that has been
named glyerol/xylulose kinase and similar
uncharacterized proteins from bacteria and eukaryota.
Carbohydrate kinases catalyze the ATP-dependent
phosphorylation of their carbohydrate substrate to
produce phosphorylated sugar and ADP. The presence of
Mg2+ is required for catalytic activity. This subgroup
shows high homology to characterized ribulokinases and
belongs to the FGGY family of carbohydrate kinases, the
monomers of which contain two large domains, which are
separated by a deep cleft that forms the active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain.
Length = 536
Score = 49.5 bits (119), Expect = 9e-07
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 25/165 (15%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFS 73
+D GT S R +F A G+L+A+ + P +VEQ +I V CQ
Sbjct: 5 GVDVGTGSARAGLFDA-KGRLLARAVRPIQIWHPQPDFVEQSSDDIWQAV------CQ-- 55
Query: 74 ACVEK-LKEQGIEPTDIVAVG--------VTNQRESTIAWDKITGEPLYNSIVWLDARTT 124
V+ + G++P + +G V ++ ++ +G+ N IVW+D R
Sbjct: 56 -AVKAAIAGAGVDPEQVKGIGFDATCSLVVLDKEGQPLSVSP-SGDNEQNIIVWMDHRAI 113
Query: 125 STLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKV 169
S E+I N + + G +SP K+ WL N+P+
Sbjct: 114 SEAERI-----NATGHPVLKYVGGVISPEMETPKLLWLKENLPET 153
>gnl|CDD|131676 TIGR02628, fuculo_kin_coli, L-fuculokinase. Members of this family
are L-fuculokinase, from the clade that includes the
L-fuculokinase of Escherichia coli. This enzyme
catalyzes the second step in fucose catabolism. This
family belongs to FGGY family of carbohydrate kinases
(pfam02782, pfam00370). It is encoded by the kinase (K)
gene of the fucose (fuc) operon [Energy metabolism,
Sugars].
Length = 465
Score = 48.7 bits (116), Expect = 2e-06
Identities = 51/266 (19%), Positives = 101/266 (37%), Gaps = 34/266 (12%)
Query: 15 IDEGTSSCRFIVFSALTGKLVAKHQI--SLGQTFPTEGWVEQDPMEILAVVNGTIEACQF 72
+D G ++ R I + GK+VA + Q + D I +
Sbjct: 6 LDCGATNLRAIAINR-QGKIVASASTPNATKQAIENNDYHIWDLEAIWQ---------KL 55
Query: 73 SACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILE 132
+ C +++ + I + VT +DK G LY I W RT ++ I
Sbjct: 56 ADCCQQI-NSELTEKHIRGIAVTTFGVDGAPFDK-QGNQLYPIISWKCPRTAPVMDNIER 113
Query: 133 VVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWI-IWNL 191
++ + L + G+ + + K+ WL + P++ E + + ++ I ++
Sbjct: 114 LLDAQR---LYAINGIGAYSFNTLYKLVWLKEHHPQLFERMHK----------FVFISSM 160
Query: 192 TGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVS- 250
+ G++ TD++ A +M+ ++ W P + + + P + + E G +
Sbjct: 161 ITHRLTGEFTTDITMAGTSMMTDLTQRNWSPQILQALGLSRRLFPPLVEAGEQIGTLQNS 220
Query: 251 -----GPLKGVPISGCLGDQHAALLG 271
G GVP+ D AL G
Sbjct: 221 AAAMLGLPVGVPVISAGHDTQFALFG 246
>gnl|CDD|198351 cd07773, FGGY_FK, L-fuculose kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
composed of bacterial L-fuculose kinases (FK, also known
as fuculokinase, EC 2.7.1.51), which catalyze the
ATP-dependent phosphorylation of L-fuculose to produce
L-fuculose-1-phosphate and ADP. The presence of Mg2+ or
Mn2+ is required for enzymatic activity. FKs belong to
the FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 448
Score = 45.2 bits (107), Expect = 2e-05
Identities = 54/268 (20%), Positives = 103/268 (38%), Gaps = 38/268 (14%)
Query: 15 IDEGTSSCRFIVFSALTGKLVAKHQIS----LGQTFPTEGWVEQDPMEILAVVNGTIEAC 70
+D G ++ R I + G++VA + G + D EI
Sbjct: 5 LDCGATNVRAIAVNE-QGQIVASASLPNATKQGIENND--YHIWDFDEIWQ--------- 52
Query: 71 QFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKI 130
+ C ++ Q + IVA+ VT DK G LY I W RT ++ I
Sbjct: 53 KLVECATQVLSQ-LNAKQIVAITVTTFGVDGAPVDK-QGNQLYPIISWKCPRTAPVMKNI 110
Query: 131 LEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWI-IW 189
+ + L + G+ + + K+ WL N P++ E + + ++ I
Sbjct: 111 ENEIDRLS---LYQINGVGAYSFNTLYKLVWLKENHPQLLEKMHK----------FVFIS 157
Query: 190 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFV 249
++ + G++ TD + A +M+ ++ + W P + + + ++ P + + E G
Sbjct: 158 SMLTHRLTGEFTTDRTMAGTSMMTDLTSGNWSPSILAYLGLSRELFPPLVDAGEKIGLLT 217
Query: 250 S------GPLKGVPISGCLGDQHAALLG 271
+ G G+P+ D AL G
Sbjct: 218 TEAAQLLGLPAGIPVISAGHDTQFALFG 245
>gnl|CDD|182383 PRK10331, PRK10331, L-fuculokinase; Provisional.
Length = 470
Score = 41.9 bits (99), Expect = 2e-04
Identities = 43/208 (20%), Positives = 82/208 (39%), Gaps = 22/208 (10%)
Query: 71 QFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKI 130
+F+ C ++ + + I + VT DK G LY I W RT + +E I
Sbjct: 55 RFADCCRQINSE-LTECHIRGITVTTFGVDGALVDK-QGNLLYPIISWKCPRTAAVMENI 112
Query: 131 LEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWI-IW 189
+ + L + G+ + + K+ WL N P++ E W+ I
Sbjct: 113 ERYISAQQ---LQQISGVGAFSFNTLYKLVWLKENHPQLLE----------QAHAWLFIS 159
Query: 190 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFV 249
+L + G++ TD++ A + +++I+ ++ P + + + P + + E G
Sbjct: 160 SLINHRLTGEFTTDITMAGTSQMLDIQQRDFSPEILQATGLSRRLFPRLVEAGEQIGTLQ 219
Query: 250 S------GPLKGVPISGCLGDQHAALLG 271
G G+P+ D AL G
Sbjct: 220 PSAAALLGLPVGIPVISAGHDTQFALFG 247
>gnl|CDD|130301 TIGR01234, L-ribulokinase, L-ribulokinase. This enzyme catalyzes
the second step in arabinose catabolism. The most
closely related protein subfamily outside the scope of
this model includes ribitol kinase from E. coli [Energy
metabolism, Sugars].
Length = 536
Score = 35.7 bits (82), Expect = 0.026
Identities = 48/202 (23%), Positives = 77/202 (38%), Gaps = 38/202 (18%)
Query: 15 IDEGTSSCRFIVFSALTGKLVA------KHQISLGQTFPTEG------WVEQDPMEILAV 62
+D GT S R + TG+ +A +H + GQ P G Q P + + V
Sbjct: 6 VDFGTLSGRALAVDVATGEEIATAVEWYRHWV-KGQFLPKTGAKLPNDQALQHPADYIEV 64
Query: 63 VNGTIEACQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLY--------- 113
+ I L E G++P D+V +GV + T A G PL
Sbjct: 65 LEAAIP--------TVLAELGVDPADVVGIGV-DFTACTPAPIDSDGNPLCLLPEFAENP 115
Query: 114 NSIV--WLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKE 171
++ W ++I + + L+ G+ S +F A KI + P + +
Sbjct: 116 HAYFKLWKHHAAQEEADRINRLAHAPGEVDLSRYGGIISSEWFWA-KILQITEEDPAIYQ 174
Query: 172 AIDQNRCCIGTVDTWIIWNLTG 193
A D+ I D WI+ L+G
Sbjct: 175 AADR---WIELAD-WIVAQLSG 192
>gnl|CDD|182609 PRK10640, rhaB, rhamnulokinase; Provisional.
Length = 471
Score = 33.9 bits (78), Expect = 0.10
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 205 SNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVSGPLKGVP------- 257
+NA+ T L+NI + +WD L + P + GH++ +P
Sbjct: 159 TNATTTQLVNINSDDWDESLLAWSGAPKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASH 218
Query: 258 ------ISGCLGDQHAALL 270
I+ L D AA L
Sbjct: 219 DTASAVIASPLNDSDAAYL 237
>gnl|CDD|223326 COG0248, GppA, Exopolyphosphatase [Nucleotide transport and
metabolism / Inorganic ion transport and metabolism].
Length = 492
Score = 32.3 bits (74), Expect = 0.33
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 14/88 (15%)
Query: 10 PLVGAIDEGTSSCRFIVFSALTGKLVA----KHQISLGQTFPTEGWVEQDPMEILAVVNG 65
V AID G++S R +V G K + LG+ G + ++ +E
Sbjct: 3 RRVAAIDLGSNSFRLVVAEITPGSFQVLFREKRIVRLGEGLDATGNLSEEAIER------ 56
Query: 66 TIEACQFSACVEKLKEQGIEPTDIVAVG 93
+ A + E L G ++ V
Sbjct: 57 ALSALKR--FAELL--DGFGAEEVRVVA 80
>gnl|CDD|183870 PRK13145, araD, L-ribulose-5-phosphate 4-epimerase; Provisional.
Length = 234
Score = 31.0 bits (70), Expect = 0.53
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 63 VNGTIEACQFSACVEKLKEQGIEPTDIVAV-GVTNQRESTIAWDKITGEPLYNSIVWLD- 120
VNG E S +E+ +++G++P +AV G+ + W K + +Y+S+V +
Sbjct: 137 VNGAYEKETGSVIIEEFEKRGLDP---MAVPGIVVRNHGPFTWGKNPEQAVYHSVVLEEV 193
Query: 121 ---ARTTSTLEKILEVVPN--KNKNYL 142
R T + +E P +K+YL
Sbjct: 194 AKMNRLTEQINPRVEPAPQYIMDKHYL 220
>gnl|CDD|178274 PLN02669, PLN02669, xylulokinase.
Length = 556
Score = 31.3 bits (71), Expect = 0.57
Identities = 45/215 (20%), Positives = 83/215 (38%), Gaps = 39/215 (18%)
Query: 34 LVAKHQISLGQTFP---TEGWVEQDPMEILAVVNGTI---EACQFSACVEKLKEQGIEPT 87
+VA + P T+ V +DP +V+ T+ EA ++KL ++
Sbjct: 31 IVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEA--LDLLLQKLAKEKFPFH 88
Query: 88 DIVAVGVTNQRESTIAWDKITGEPLYN-------------------SIVWLDARTTSTLE 128
+VA+ + Q+ ++ W K L + S +W+D+ TT
Sbjct: 89 KVVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCR 148
Query: 129 KILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWII 188
+I E V + L+ L G F+ +I + P+V ++ I V +++
Sbjct: 149 EIEEAVGGAAE--LSKLTGSRAYERFTGPQIRKIYETQPEVYHDTER----ISLVSSFMA 202
Query: 189 WNLTGGKDGGKYIT-DVSNASRTMLMNIETLEWDP 222
L G Y + D ++ + LM+IE W
Sbjct: 203 SLLVGD-----YASIDETDGAGMNLMDIEKRCWSK 232
>gnl|CDD|235221 PRK04123, PRK04123, ribulokinase; Provisional.
Length = 548
Score = 30.6 bits (70), Expect = 1.1
Identities = 52/212 (24%), Positives = 76/212 (35%), Gaps = 48/212 (22%)
Query: 15 IDEGTSSCRFIVFSALTGKLVAKH-------QISLGQTFPTEGWVEQDP---MEILAVVN 64
+D GT S R ++ TG+ +A P Q P +E L
Sbjct: 8 LDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPN-QALQHPLDYIESLEA-- 64
Query: 65 GTIEACQFSACVEKLKEQGIEPTDIVAVGV--TNQRESTIAWDKITGEPLY--------- 113
A LKE G++P +V +GV T ST A G PL
Sbjct: 65 ---------AIPAVLKEAGVDPAAVVGIGVDFTG---STPAPVDADGTPLALLPEFAENP 112
Query: 114 NSIV--WLDARTTSTLEKILEVVPNKNKNYLAPLCG-LPLSPYFSALKINWLMNNVPKVK 170
+++V W D E+I + + + L+ G + S +F A KI ++ P V
Sbjct: 113 HAMVKLWKDHTAQEEAEEINRLAHERGEADLSRYIGGIYSSEWFWA-KILHVLREDPAVY 171
Query: 171 EAIDQ--NRCCIGTVDTWIIWNLTGGKDGGKY 200
EA C D W++ LTG D
Sbjct: 172 EAAASWVEAC-----D-WVVALLTGTTDPQDI 197
>gnl|CDD|183459 PRK12347, sgbE, L-ribulose-5-phosphate 4-epimerase; Reviewed.
Length = 231
Score = 29.8 bits (67), Expect = 1.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 76 VEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIV 117
+E +E+GI P I AV V + AW K + ++N++V
Sbjct: 150 IETFEERGISPAQIPAVLVHSH--GPFAWGKNAADAVHNAVV 189
>gnl|CDD|183528 PRK12440, PRK12440, acetate kinase; Reviewed.
Length = 397
Score = 29.8 bits (67), Expect = 1.7
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 19/134 (14%)
Query: 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTE----GWVEQ-DPMEILAVVNG 65
V I+ G+SS +F V ++TG+ V LG+ F E W Q + EI
Sbjct: 5 YVLVINSGSSSLKFAVIDSVTGEAVLS---GLGECFGLEDARMSWKYQGEKTEIAIEGED 61
Query: 66 TIEACQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTS 125
V +E G DIVAVG R + G + S V +D T+
Sbjct: 62 NHHKIAIGRLVGLTEELGFT-QDIVAVG---HR-------IVHGGEKFTSTVRIDEEVTA 110
Query: 126 TLEKILEVVPNKNK 139
+E + ++ P N
Sbjct: 111 EIESLSDLAPLHNP 124
>gnl|CDD|181452 PRK08507, PRK08507, prephenate dehydrogenase; Validated.
Length = 275
Score = 29.5 bits (67), Expect = 1.7
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 125 STLEKILEVVP-NKNKNYLA--PLCG 147
ST KI+E VP + KN++A P+ G
Sbjct: 92 STKAKIIESVPKHIRKNFIAAHPMAG 117
>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase. This model
describes the final step in the biosynthesis of
ornithine from glutamate via the non-acetylated pathway.
Ornithine amino transferase takes L-glutamate
5-semialdehyde and makes it into ornithine, which is
used in the urea cycle, as well as in the biosynthesis
of arginine. This model includes low-GC bacteria and
eukaryotic species. The genes from two species are
annotated as putative acetylornithine aminotransferases
- one from Porphyromonas gingivalis (OMNI|PG1271), and
the other from Staphylococcus aureus (OMNI|SA0170).
After homology searching using BLAST it was determined
that these two sequences were most closely related to
ornithine aminotransferases. This model's seed includes
one characterized hit, from Bacillus subtilis
(SP|P38021).
Length = 401
Score = 29.2 bits (66), Expect = 2.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 244 IYGHFVSGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYG 285
+ G +SG + P+S L D L +KPG STYG
Sbjct: 252 LLGKALSGGV--YPVSAVLADDDVML----TIKPGEHGSTYG 287
>gnl|CDD|240258 PTZ00075, PTZ00075, Adenosylhomocysteinase; Provisional.
Length = 476
Score = 29.2 bits (66), Expect = 3.0
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 235 LPTICSSSEIYGHFVSGPLKGVPISGCL 262
+P + + E YG S PLKG I+GCL
Sbjct: 27 MPGLMALREEYGP--SKPLKGARITGCL 52
>gnl|CDD|233955 TIGR02627, rhamnulo_kin, rhamnulokinase. This model describes
rhamnulokinase, an enzyme that catalyzes the second step
in rhamnose catabolism.
Length = 454
Score = 28.9 bits (65), Expect = 3.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 198 GKYITDVSNASRTMLMNIETLEWDPMLCGFFTIP 231
GK + + +NA+ T L+NI T +WD L + +P
Sbjct: 164 GKKVWEYTNATTTQLVNINTDDWDEDLLAYLGVP 197
>gnl|CDD|239426 cd03310, CIMS_like, CIMS - Cobalamine-independent methonine
synthase, or MetE. Many members have been characterized
as 5-methyltetrahydropteroyltriglutamate-homocysteine
methyltransferases, EC:2.1.1.14, mostly from bacteria
and plants. This enzyme catalyses the last step in the
production of methionine by transferring a methyl group
from 5-methyltetrahydrofolate to L-homocysteine without
using an intermediate methyl carrier. The active enzyme
has a dual (beta-alpha)8-barrel structure, and this
model covers both the N-and C-terminal barrel, and some
single-barrel sequences, mostly from Archaea. It is
assumed that the homologous N-terminal barrel has
evolved from the C-terminus via gene duplication and has
subsequently lost binding sites, and it seems as if the
two barrels forming the active enzyme may sometimes
reside on different polypeptides. The C-terminal domain
incorporates the Zinc ion, which binds and activates
homocysteine. Side chains from both barrels contribute
to the binding of the folate substrate.
Length = 321
Score = 27.8 bits (62), Expect = 6.5
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 21/100 (21%)
Query: 76 VEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEVVP 135
++KL G+ T I+ + VT+ W + L + LE
Sbjct: 240 LKKLLRIGVR-TLILGLVVTD-------------NEAKGRNAWKEIERLEKLVRRLEEPG 285
Query: 136 ---NKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEA 172
++ YL P CGL P A + + + +
Sbjct: 286 EVLDEIL-YLTPDCGLAFLPPQEARR---KLALLAEAARE 321
>gnl|CDD|234854 PRK00881, purH, bifunctional
phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase; Provisional.
Length = 513
Score = 28.1 bits (64), Expect = 6.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 76 VEKLKEQGIEPTDIVAV 92
V L+E GIEP D+V V
Sbjct: 86 VAALEEHGIEPIDLVVV 102
>gnl|CDD|181145 PRK07850, PRK07850, acetyl-CoA acetyltransferase; Provisional.
Length = 387
Score = 27.8 bits (62), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 71 QFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWD 105
QF A K +GI D+ A G+ +QR + AW
Sbjct: 147 QFEAAERIAKRRGITREDVDAFGLRSQRRAAQAWA 181
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.430
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,973,827
Number of extensions: 1391516
Number of successful extensions: 1441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1279
Number of HSP's successfully gapped: 68
Length of query: 297
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 201
Effective length of database: 6,679,618
Effective search space: 1342603218
Effective search space used: 1342603218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)