RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9351
(297 letters)
>2w40_A Glycerol kinase, putative; closed conformation, malaria,
transferase, sugar kinase/HSP70/actin superfamily, open
conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Length = 503
Score = 399 bits (1027), Expect = e-138
Identities = 111/289 (38%), Positives = 157/289 (54%), Gaps = 18/289 (6%)
Query: 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQ 71
+ +ID+ T S + + +V + ++ Q GW E DP+EI+ + +
Sbjct: 6 ILSIDQSTQSTKVFFYDE-ELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNE-- 62
Query: 72 FSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKIL 131
K+ + I +G+TNQRE+ I WD+ITG+PLYN+IVWLD R + +
Sbjct: 63 ----GIKVLKDKYTSVIIKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFS 118
Query: 132 EVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNL 191
N N + G + YFSA KI WL+ N P++K+ ID IG ++TW+I+NL
Sbjct: 119 A---KYNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNL 175
Query: 192 TGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIP-MDILPTICSSSEIYGHFVS 250
T G TDV+NASRT+LM+I TL+WD +C F I M +LP I S+ +G S
Sbjct: 176 TKGN----CYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKS 231
Query: 251 ---GPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGN 296
+PI+GC+GDQ +A +GQ G AK TYGTG FLL NTG
Sbjct: 232 EHVPDYLNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGE 280
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif,
actin- like ATPase domain, transferase; 2.30A
{Cellulomonas SP}
Length = 504
Score = 393 bits (1012), Expect = e-136
Identities = 127/292 (43%), Positives = 175/292 (59%), Gaps = 16/292 (5%)
Query: 6 GQYGPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNG 65
Y V AID+GT+S R IVF +G++ + Q+ Q FP GWVE +P +I
Sbjct: 1 ADY---VLAIDQGTTSSRAIVFDH-SGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNN--- 53
Query: 66 TIEACQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTS 125
L + DI AVG+TNQRE+ + WDK TG+P+YN+IVW D RT
Sbjct: 54 -----VREVVGLALTRGNLTHEDIAAVGITNQRETAVVWDKTTGKPVYNAIVWQDTRTQK 108
Query: 126 TLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDT 185
++++ ++ + GLPL+ YFS KI W+++NV +E ++ G DT
Sbjct: 109 IVDELGG---DEGAEKYKSIVGLPLATYFSGPKIKWILDNVEGAREKAEKGDLLFGNTDT 165
Query: 186 WIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIY 245
W++WN+TGG +GG ++TDV+NASRTMLM+++TL W + IP+ +LP I SSSE+Y
Sbjct: 166 WVLWNMTGGTEGGVHVTDVTNASRTMLMDLDTLSWREDIAADMGIPLSMLPDIRSSSEVY 225
Query: 246 GHFV-SGPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGN 296
GH G + GVPI+G LGDQ AA GQ C + G AK+TYGTG FLL NTG
Sbjct: 226 GHGRPRGLVPGVPIAGILGDQQAATFGQACFEVGQAKNTYGTGNFLLLNTGT 277
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation,
microfluidics,; 2.00A {Escherichia coli} SCOP: c.55.1.4
c.55.1.4 PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G*
1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y*
1gll_Y*
Length = 510
Score = 374 bits (964), Expect = e-128
Identities = 123/287 (42%), Positives = 170/287 (59%), Gaps = 17/287 (5%)
Query: 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQ 71
+ A+D+GT+S R +V +++ Q Q +P GWVE DPMEI A Q
Sbjct: 5 IVALDQGTTSSRAVVMDH-DANIISVSQREFEQIYPKPGWVEHDPMEIWAT--------Q 55
Query: 72 FSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKIL 131
S VE L + I I A+G+TNQRE+TI W+K TG+P+YN+IVW RT E +
Sbjct: 56 SSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLK 115
Query: 132 EVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNL 191
+ ++Y+ GL + PYFS K+ W++++V +E + GTVDTW+IW +
Sbjct: 116 R---DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKM 172
Query: 192 TGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVSG 251
T G+ ++TD +NASRTML NI TL+WD + IP ++LP + SSE+YG
Sbjct: 173 TQGR---VHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNID 229
Query: 252 PLKG--VPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGN 296
G +PISG GDQ AAL GQ C+K G+AK+TYGTGCF+L NTG
Sbjct: 230 GKGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGE 276
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.80A {Thermus thermophilus}
Length = 495
Score = 374 bits (962), Expect = e-128
Identities = 125/286 (43%), Positives = 162/286 (56%), Gaps = 16/286 (5%)
Query: 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQ 71
+ A+D+GT+S R I+F+ G+ VA + Q +P GWVE DP+EI
Sbjct: 4 LLALDQGTTSSRAILFTL-EGRPVAVAKREFRQLYPKPGWVEHDPLEIWET--------T 54
Query: 72 FSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKIL 131
A E L+ G E +++A+G+TNQRE+T+ WD+ TG+PL+N+IVW D RTT E +
Sbjct: 55 LWAAREVLRRAGAEAGEVLALGITNQRETTLLWDRKTGKPLHNAIVWQDRRTTPLCEALR 114
Query: 132 EVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNL 191
+ GL PYFS K+ WL+ NVP +K + GTVDTW+IWNL
Sbjct: 115 A---KGLEPLFRERTGLLFDPYFSGTKLVWLLENVPGLKARAEGGGVAFGTVDTWLIWNL 171
Query: 192 TGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVSG 251
TGGK + TD +NASRT+L N+ TL WDP L IP +LP + S +G +
Sbjct: 172 TGGK---VHATDPTNASRTLLFNLHTLAWDPELLEALGIPAALLPEVRPSDGDFGETLPE 228
Query: 252 PL-KGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGN 296
L VPI G LGDQ AAL GQ L G K TYGTG FLL NTG
Sbjct: 229 LLGAPVPIRGVLGDQQAALFGQAALGGGEGKCTYGTGAFLLLNTGK 274
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti
binding, phosphoprotein, transferase; 1.73A
{Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X
3h45_X 3d7e_O 1r59_O 1xup_O
Length = 506
Score = 374 bits (963), Expect = e-128
Identities = 118/298 (39%), Positives = 164/298 (55%), Gaps = 22/298 (7%)
Query: 1 MTQIKGQYGPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEIL 60
M + Y V AID+GT+S R I+F GK + Q Q FP GWVE + EI
Sbjct: 1 MAEKN--Y---VMAIDQGTTSSRAIIFDR-NGKKIGSSQKEFPQYFPKSGWVEHNANEIW 54
Query: 61 AVVNGTIEACQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLD 120
S E GI P I +G+TNQRE+T+ WDK TG+P+ N+IVW
Sbjct: 55 NS--------VQSVIAGAFIESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQS 106
Query: 121 ARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCI 180
+++ +++ + + + GL + YFSA K+ WL++N+ +E D
Sbjct: 107 RQSSPIADQLKV---DGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLF 163
Query: 181 GTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICS 240
GT+D+W++W LT G+ ++TD SNASRTML NI LEWD + IP +LP + S
Sbjct: 164 GTIDSWLVWKLTDGQ---VHVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKS 220
Query: 241 SSEIYGHFVSGPLKG--VPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGN 296
+SE+YGH S G VPI+G GDQ AAL GQ + G+ K+TYGTG F++ NTG
Sbjct: 221 NSEVYGHTRSYRFYGSEVPIAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGE 278
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism,
nucleotide-binding, transferase, struct genomics; HET:
MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Length = 501
Score = 373 bits (960), Expect = e-128
Identities = 112/287 (39%), Positives = 161/287 (56%), Gaps = 17/287 (5%)
Query: 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQ 71
+ +ID+GT+S R I+F+ G++ Q Q FP GWVE D EI
Sbjct: 8 ILSIDQGTTSSRAILFNQ-KGEIAGVAQREFKQYFPQSGWVEHDANEIWTS--------V 58
Query: 72 FSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKIL 131
+ E + E + I +G+TNQRE+T+ WDK TG P+Y++IVW +T S ++
Sbjct: 59 LAVMTEVINENDVRADQIAGIGITNQRETTVVWDKHTGRPIYHAIVWQSRQTQSICSELK 118
Query: 132 EVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNL 191
+ + GL L PYF+ K+ W+++NV +E + GT+DTW++W L
Sbjct: 119 Q---QGYEQTFRDKTGLLLDPYFAGTKVKWILDNVEGAREKAENGDLLFGTIDTWLVWKL 175
Query: 192 TGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVSG 251
+G +ITD SNASRT++ NI LEWD L T+P ++LP + +SSE+YG +
Sbjct: 176 SGKA---AHITDYSNASRTLMFNIHDLEWDDELLELLTVPKNMLPEVKASSEVYGKTIDY 232
Query: 252 PLKG--VPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGN 296
G VPI+G GDQ AAL GQ C + G K+TYGTG F+L NTG+
Sbjct: 233 HFYGQEVPIAGVAGDQQAALFGQACFERGDVKNTYGTGGFMLMNTGD 279
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
transferase; 2.33A {Sinorhizobium meliloti}
Length = 520
Score = 373 bits (959), Expect = e-128
Identities = 117/286 (40%), Positives = 159/286 (55%), Gaps = 16/286 (5%)
Query: 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQ 71
+ AID+GT+S R IVF K+ Q Q FP GWVE DP EI
Sbjct: 28 ILAIDQGTTSTRAIVFDG-NQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQT--------V 78
Query: 72 FSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKIL 131
S E +++ GI DI A+G+TNQRE+ + WD+ TG+P++N+IVW D RT + +K+
Sbjct: 79 VSTVKEAIEKSGITANDIAAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLK 138
Query: 132 EVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNL 191
+ + GL L PYFS K+NWL++NV + + C GT+DT++IW L
Sbjct: 139 K---KGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLIWRL 195
Query: 192 TGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVSG 251
TGG+ + TD +NASRT+L NI WD L +P ++LP + + +G
Sbjct: 196 TGGE---CFCTDATNASRTLLYNIAENAWDDELTEVLRVPKEMLPEVKDCAADFGVTDPS 252
Query: 252 PL-KGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGN 296
+PI G GDQ AA +GQ C KPG+ KSTYGTGCF L NTG
Sbjct: 253 LFGAAIPILGVAGDQQAATIGQACFKPGMLKSTYGTGCFALLNTGK 298
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL
metabolism, nucleotide-binding, transferase; 2.40A
{Thermococcus kodakarensis}
Length = 497
Score = 366 bits (943), Expect = e-126
Identities = 121/290 (41%), Positives = 164/290 (56%), Gaps = 28/290 (9%)
Query: 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQ 71
V ++DEGT+S R I+F + Q Q +P GWVE +P EI Q
Sbjct: 5 VLSLDEGTTSARAIIFDR-ESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDA--------Q 55
Query: 72 FSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKI- 130
A + ++ IEP I A+GVTNQRE+T+ WDK G+PLYN+IVW RT +E+I
Sbjct: 56 LRAIKDAIQSARIEPNQIAAIGVTNQRETTLVWDK-DGKPLYNAIVWQCRRTAEMVEEIK 114
Query: 131 ---LEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWI 187
++ K GL YFSA K+ WL++NVP ++E ++ GTVDT++
Sbjct: 115 REYGTMIKEK--------TGLVPDAYFSASKLKWLLDNVPGLREKAEKGEVMFGTVDTFL 166
Query: 188 IWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGH 247
I+ LTG ++TD SNASRTML NI+ L+WD L F IP +LP + SSE+YG+
Sbjct: 167 IYRLTGE-----HVTDYSNASRTMLFNIKKLDWDDELLELFDIPESVLPEVRESSEVYGY 221
Query: 248 FVSGPL-KGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGN 296
L +P+SG GDQ AAL GQ + G+ K+TYGTG F+L NT
Sbjct: 222 TKKELLGAEIPVSGDAGDQQAALFGQAAFEAGMVKATYGTGSFILVNTDK 271
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 262 bits (673), Expect = 5e-85
Identities = 63/289 (21%), Positives = 105/289 (36%), Gaps = 31/289 (10%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFS 73
+D GT++ + +++ GK VA G E+DP I V I
Sbjct: 8 GMDVGTTATKGVLYDI-NGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEII-----F 61
Query: 74 ACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEV 133
+K+ I A+ ++Q S I E L NSI W D S ++
Sbjct: 62 DLTQKI------DGKIAAISWSSQMHSLIGLGS-DDELLTNSITWADNCAKSIVQDAKNR 114
Query: 134 VPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTG 193
+ + G+P+ P K+ WL N +V + + +II+ LTG
Sbjct: 115 GFAQ---QIYRKTGMPMHPMAPIYKLLWLKNKKTEVFSQAQK----WIGIKEYIIFRLTG 167
Query: 194 GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVS--- 250
K +TD + A+ T ++N++TL WD L I + LP I +++ +
Sbjct: 168 -----KLVTDTTMAAGTGILNLKTLTWDQELLDILKIKKEQLPKIAQPTKVIFPIKTEYV 222
Query: 251 ---GPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGN 296
G I D + + +G N + GT +
Sbjct: 223 KKLGIDSDTKIILGASDGYLSTIGVNAIDSDHCALNVGTSGAIRTIVDQ 271
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 233 bits (596), Expect = 1e-73
Identities = 43/289 (14%), Positives = 100/289 (34%), Gaps = 31/289 (10%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQ----TFPTEGWVEQDPMEILAVVNGTIEA 69
A+D G SS R ++ + + + + G+V D + + + +
Sbjct: 8 AVDLGASSGRVMLAR-YERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNK 66
Query: 70 CQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEK 129
I ++G+ + D+ G+ + + + D+RT + +
Sbjct: 67 V------------CAAGIAIDSIGIDTWGVDFVLLDQ-QGQRVGLPVAYRDSRTNGLMAQ 113
Query: 130 ILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIW 189
+ + K + G+ P+ + ++ L P++ I + + +
Sbjct: 114 AQQQLG---KRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAH----ALLMPDYFSY 166
Query: 190 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFV 249
LTG K + +NA+ T L+NI + +WD L + + GH++
Sbjct: 167 RLTG-----KMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWI 221
Query: 250 SGPLKGVP-ISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLYNTGNH 297
+P ++ D +A++ A + GT + + +
Sbjct: 222 CPQGNEIPVVAVASHDTASAVIASPLNGSRAAYLSSGTWSLMGFESQTP 270
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 190 bits (484), Expect = 6e-57
Identities = 56/298 (18%), Positives = 103/298 (34%), Gaps = 33/298 (11%)
Query: 1 MTQIKGQYGPLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEIL 60
M+ +G+ ++G +D GT+S I+ +VA + P GW E+DP +
Sbjct: 1 MSLAQGRQ--VIG-LDIGTTSTIAILVRL-PDTVVAVASRPTTLSSPHPGWAEEDPAQWW 56
Query: 61 AVVNGTIEACQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLD 120
+ G + VT + + D G L SI D
Sbjct: 57 DNARAVLAEL--------KTTAGESDWRPGGICVTGMLPAVVLLDD-RGAVLRPSIQQSD 107
Query: 121 ARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCI 180
R + ++ V ++ G ++ K+ W+ + P V AI +
Sbjct: 108 GRCGDEVAELRAEVDSEA---FLARTGNGVTQQLVTAKLRWIERHEPAVFGAIAT----V 160
Query: 181 GTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICS 240
+I LTG + + D + A +++ + + L IP +P
Sbjct: 161 CGSYDYINMLLTG-----ERVVDRNWALEGGFIDLASGTVEADLVALAHIPPSAVPPAHP 215
Query: 241 SSEIYGHFVS-------GPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLL 291
+ + G V+ G G+P+ G D A+ L +PG +G ++
Sbjct: 216 THRVLGA-VTAEAAALTGLPTGLPVYGGAADHIASALAAGITRPGDVLLKFGGAGDII 272
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 187 bits (476), Expect = 8e-56
Identities = 65/286 (22%), Positives = 112/286 (39%), Gaps = 30/286 (10%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFS 73
D GT+ + + G L + I+L G VEQD + +A Q
Sbjct: 9 TFDIGTTEVKAALADR-DGGLHFQRSIALETYGDGNGPVEQDAGDW-------YDAVQ-- 58
Query: 74 ACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEV 133
+ G++ + A+ ++ Q ++ + D+ EPL+ ++++ D R E+I
Sbjct: 59 RIASSWWQSGVDARRVSAIVLSGQMQNFLPLDQ-DHEPLHRAVLYSDKRPLKEAEEINAR 117
Query: 134 VPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTG 193
N L P++ K+ + + P +A + R + +++ LTG
Sbjct: 118 HGADN---LWSALENPMTAASILPKLVFWRASFP---QAFGRLRHVVLGAKDYVVLRLTG 171
Query: 194 GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVS--- 250
++ TD +NAS T L + W L + +D++P + E G VS
Sbjct: 172 -----RHATDRTNASTTGLYRPKDDAWHVELLADYGFSLDLMPRLLEPGEQVGG-VSALA 225
Query: 251 ----GPLKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLLY 292
G + G P+ LGD AA LG L A GT +L
Sbjct: 226 ARQTGFVSGTPVLCGLGDAGAATLGVGVLDDEDAYLHLGTTGWLAR 271
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 176 bits (448), Expect = 7e-52
Identities = 63/287 (21%), Positives = 115/287 (40%), Gaps = 33/287 (11%)
Query: 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEAC 70
+ ID GTS + I+ + G++VA L + P W EQDP + +A
Sbjct: 1 MYIGIDLGTSGVKVILLNE-QGEVVAAQTEKLTVSRPHPLWSEQDPEQW-------WQAT 52
Query: 71 QFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKI 130
++ L +Q D+ A+G+ Q D L +I+W D R +
Sbjct: 53 D--RAMKALGDQH-SLQDVKALGIAGQMHGATLLDA-QQRVLRPAILWNDGRCAQECTLL 108
Query: 131 LEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWN 190
VP + G + P F+A K+ W+ + P++ ID+ + ++
Sbjct: 109 EARVPQS-----RVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDK----VLLPKDYLRLR 159
Query: 191 LTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVS 250
+TG ++ +D+S+A+ TM +++ +W ++ + D +P + SEI G +
Sbjct: 160 MTG-----EFASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGA-LL 213
Query: 251 GP------LKGVPISGCLGDQHAALLGQNCLKPGLAKSTYGTGCFLL 291
+ VP+ GD A +G + A + GT
Sbjct: 214 PEVAKAWGMATVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYF 260
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 158 bits (402), Expect = 9e-45
Identities = 55/319 (17%), Positives = 103/319 (32%), Gaps = 57/319 (17%)
Query: 11 LVGAIDEGTSSCRFIVFSALTGKLVAKHQIS-----------LGQTFPTEGWVEQDPMEI 59
+G +D GT S R ++ G+ +A H W Q P++
Sbjct: 7 TIG-VDYGTESGRAVLIDLSNGQELADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDY 65
Query: 60 LAVVNGTIEACQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNS---- 115
+ V+ ++ A +KE G++ D++ +GV + + D+ G+PL
Sbjct: 66 VEVLTTSVPAV--------MKESGVDADDVIGIGVDFTACTMLPVDE-EGQPLCLLAQYK 116
Query: 116 -------IVWLDARTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPK 168
+W I E+ + + +L G +S + K+ +++
Sbjct: 117 DNPHSWVKLWKHHAAQDKANAINEMAEKRGEAFLP-RYGGKISSEWMIAKVWQILDEAED 175
Query: 169 VKEAIDQNRCCIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFF 228
V DQ WI+ +TG K + + A + +
Sbjct: 176 VYNRTDQ----FLEATDWIVSQMTG-----KIVKNSCTAGYKAIWHKREGYPSNEFFKAL 226
Query: 229 TIPMD------ILPTICSSSEIYGHFVS-------GPLKGVPISGCLGDQHAALLGQNCL 275
++ + I E G + G G+ ++ D HAA+
Sbjct: 227 DPRLEHLTTTKLRGDIVPLGERAGG-LLPEMAEKMGLNPGIAVAVGNVDAHAAVPAVGVT 285
Query: 276 KPGLAKSTYGT-GCFLLYN 293
PG GT C +L
Sbjct: 286 TPGKLVMAMGTSICHMLLG 304
Score = 28.9 bits (65), Expect = 2.4
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 59 ILAVVNGTIEACQFSACVEKLKEQGIEPTDIVAVG 93
A++ T A A V+ +G+E ++ A G
Sbjct: 415 YRALLEAT--AFGTRAIVDAFHGRGVEVHELYACG 447
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 151 bits (384), Expect = 3e-42
Identities = 58/311 (18%), Positives = 97/311 (31%), Gaps = 58/311 (18%)
Query: 15 IDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFSA 74
+D GT S R VF G++V + + P +VEQ I V +
Sbjct: 10 VDVGTGSARAGVFDL-QGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDA---- 64
Query: 75 CVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPL---------YNSIVWLDARTTS 125
+ + I P + +G S + DK G PL N IVW+D R +
Sbjct: 65 ----VNQADINPIQVKGLGFDATC-SLVVLDK-EGNPLTVSPSGRNEQNVIVWMDHRAIT 118
Query: 126 TLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDT 185
E+I N K+ + G +SP K+ WL ++P + + +
Sbjct: 119 QAERI-----NATKHPVLEFVGGVISPEMQTPKLLWLKQHMPNTWSNVGH----LFDLPD 169
Query: 186 WIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPM---DILPTICSSS 242
++ W T + + WDP + + I ++
Sbjct: 170 FLTWRAT-----KDETRSLCSTVCKWTYLGHEDRWDPSYFKLVGLADLLDNNAAKIGATV 224
Query: 243 EIYGHFVSGPLK-----------GVPISGCLGDQHAALLG---------QNCLKPGLAKS 282
+ G + L G +S + D HA +G +N
Sbjct: 225 KPMGAPLGHGLSQRAASEMGLIPGTAVSVSIIDAHAGTIGILGASGVTGENANFDRRIAL 284
Query: 283 TYGT-GCFLLY 292
GT +
Sbjct: 285 IGGTSTAHMAM 295
Score = 28.5 bits (64), Expect = 2.8
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 60 LAVVNGTIEACQFSACVEKLKEQGIEPTDIVAVG 93
LA + A +E + + G ++A G
Sbjct: 419 LATIQAL--ALGTRHIIETMNQNGYNIDTMMASG 450
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 140 bits (355), Expect = 2e-38
Identities = 57/325 (17%), Positives = 97/325 (29%), Gaps = 72/325 (22%)
Query: 10 PLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEA 69
LV +D T SC+ V A TG+LV Q DP
Sbjct: 5 TLVAGVDTSTQSCKVRVTDAETGELVRFGQA------KHPNGTSVDPSYW---------- 48
Query: 70 CQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEK 129
+SA E ++ D+ A+ V Q+ + D G + ++++W D +
Sbjct: 49 --WSAFQEAAEQ-AGGLDDVSALAVGGQQHGMVILDN-QGNVIRDAMLWNDTSSAPQAAA 104
Query: 130 ILEVVPNKNKNY-------------LAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQN 176
++E + G ++ K+ W+ N P+ + I
Sbjct: 105 LIEKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTLTKVAWVAENEPENVKKIA-- 162
Query: 177 RCCIGTV----DTWIIWNLTG--------GKDGGKYITDVSNASRTMLMNIETLEWDPML 224
+ D W+ W + G TD S+AS T+ + + E+ L
Sbjct: 163 -----AICLPHD-WLSWRIAGYGPVAEGEDAHLEALFTDRSDASGTIYYDAASNEYRRDL 216
Query: 225 CGFF------------TIPMDILPTICSSSEIYGHFVS------GPLKGVPISGCLGDQH 266
+LPT+ + G ++ GD
Sbjct: 217 IAMVLEAAEGAKAAQSHAEAIVLPTVLGPRDAAPVKADPAIAGKNVEGGCLLAPGGGDNA 276
Query: 267 AALLGQNCLKPGLAKSTYGTGCFLL 291
A LG + G + GT
Sbjct: 277 MASLGLG-MAVGDVSISLGTSGVAA 300
Score = 28.1 bits (63), Expect = 3.7
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 61 AVVNGTIEACQFSACVEKLKEQGIEPTDIVAVG 93
A V G C C+E ++ G T I+ +G
Sbjct: 402 AFVEGL--LCSQRDCLELIRSLGASITRILLIG 432
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain
12444, SGX, transferase; 2.50A {Novosphingobium
aromaticivorans}
Length = 482
Score = 128 bits (324), Expect = 3e-34
Identities = 34/295 (11%), Positives = 77/295 (26%), Gaps = 45/295 (15%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFS 73
ID G + + ++ G+++ + +G D +
Sbjct: 10 VIDLGKTLSKVSLWDL-DGRMLDRQVRP-SIPLEIDGIRRLDAPDT------------GR 55
Query: 74 ACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKILEV 133
++ L + + A G + + + + + +
Sbjct: 56 WLLDVLSR--YADHPVTTIVPVGHGAGIAALTD--GRLAFPPLDYEQSIPEAVMADYRSQ 111
Query: 134 VPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTG 193
+ L ++ WL P V + + W LT
Sbjct: 112 RDPFARTGSPALPD----GLNIGSQLWWLDQLHPDVMANA-----TLLPWAQYWAWFLT- 161
Query: 194 GKDGGKYITDVSNAS-RTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVS-- 250
G+ +++V++ + L + + ++ PM I + + G +
Sbjct: 162 ----GRAVSEVTSLGCHSDLWDPQDGDFSPMA-KRLGWA-ARFAPIVRAGDTVGALLPAI 215
Query: 251 ----GPLKGVPISGCLGDQHAALLGQNCLKPGLAKS----TYGTGCFLLYNTGNH 297
G V + L D +AALL + GT +
Sbjct: 216 AERTGLSPDVQVLAGLHDSNAALLAARGFAEIADNEATVLSTGTWFIAMRLPATP 270
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 8e-05
Identities = 35/259 (13%), Positives = 71/259 (27%), Gaps = 68/259 (26%)
Query: 75 CVEKLKE--QGIEPTDIVAV-GVTNQRESTIAW----DKITGEPLYNSIVWLDARTTSTL 127
KL++ + P V + GV ++ +A + I WL+ + ++
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 128 EKILEVVPNKNKNYLAPLCGLPLSPYFSALKINWL-------------------MNNV-- 166
E +LE++ L+I+ + + NV
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 167 PKVKEAIDQNRC--CIGTVDTWIIWNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPML 224
K A + C + T + L+ + S L E +L
Sbjct: 256 AKAWNAFN-LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT----LTPDEVKS---LL 307
Query: 225 CGFFTIPMDILPT-ICSSS------------------EIYGHFVSGPLKGVPISGCLGDQ 265
+ LP + +++ + + H L + I L
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-IESSL--- 363
Query: 266 HAALLGQNCLKPGLAKSTY 284
N L+P + +
Sbjct: 364 -------NVLEPAEYRKMF 375
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase;
1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB:
1t6d_A 2j4r_A*
Length = 315
Score = 39.1 bits (92), Expect = 0.001
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 20/98 (20%)
Query: 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQIS----LGQTFPTEGWVEQDPMEILAVVNGTI 67
V +ID G+ S R + GKL + LG G +++D +E TI
Sbjct: 14 VASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEE------TI 67
Query: 68 EACQFSACVEKLKEQGIEPTDIVAVG------VTNQRE 99
+ + + + E + AV N E
Sbjct: 68 QVLK--EYKKLIDEFK--VERVKAVATEAIRRAKNAEE 101
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar
kinases, HSC70, superfamily; 1.90A {Escherichia coli}
SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Length = 513
Score = 36.9 bits (86), Expect = 0.006
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 14/87 (16%)
Query: 11 LVGAIDEGTSSCRFIVFSALTGKLV----AKHQISLGQTFPTEGWVEQDPMEILAVVNGT 66
A+D G++S ++ + G + K ++ L + + ++ M
Sbjct: 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTR------G 65
Query: 67 IEACQFSACVEKLKEQGIEPTDIVAVG 93
+ E+L QG P + VG
Sbjct: 66 LNCLS--LFAERL--QGFSPASVCIVG 88
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics,
center for structural genomics, JCSG, protein structure
INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens
str}
Length = 508
Score = 36.9 bits (86), Expect = 0.007
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 12 VGAIDEGTSSCRFIVFSALTGKLVA----KHQISLGQTFPTEGWVEQDPMEILAVVNGTI 67
V ID G++S R +V+ L+ K LG+ G + ++ + +
Sbjct: 17 VSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRMHEEGVTR------AL 70
Query: 68 EACQFSACVEKLKEQGIEPTDIVA 91
A + ++ + ++A
Sbjct: 71 MALR--RFHVLSEQAQAQKLYVLA 92
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2,
X-RAY, structure, structural genomics, PSI-2; 2.40A
{Bifidobacterium longum NCC2705}
Length = 343
Score = 34.9 bits (81), Expect = 0.024
Identities = 17/101 (16%), Positives = 25/101 (24%), Gaps = 21/101 (20%)
Query: 10 PLVGAIDEGTSSCRFIVFSAL-TGKLVAKHQIS----LGQTFPTEGWVEQDPMEILAVVN 64
V ID GT+S R + G +I LGQ + +E
Sbjct: 16 VTVAGIDCGTNSIRLKIARVDADGMHEVVPRILRVIRLGQDVDKTHRFADEALE------ 69
Query: 65 GTIEACQFSACVEKLKEQGIEPTDIVAVG------VTNQRE 99
A + + V N+ E
Sbjct: 70 RAYVAA--REFAGVI--AEHPIDGLRFVATSATRDAENREE 106
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.035
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 27/84 (32%)
Query: 10 PLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEA 69
+ I+E ++S F + G L T T Q P A+ +E
Sbjct: 1705 KIFKEINEHSTS---YTFRSEKGLL--------SATQFT-----Q-P----ALT--LMEK 1741
Query: 70 CQFSACVEKLKEQGIEPTDIVAVG 93
A E LK +G+ P D G
Sbjct: 1742 ----AAFEDLKSKGLIPADATFAG 1761
Score = 34.3 bits (78), Expect = 0.053
Identities = 30/216 (13%), Positives = 60/216 (27%), Gaps = 87/216 (40%)
Query: 16 DEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVN--------GTI 67
+EG S + S LT + V + P VE +++VN G
Sbjct: 331 NEGVPSPMLSI-SNLTQEQVQDYVNKTNSHLPAGKQVE------ISLVNGAKNLVVSGPP 383
Query: 68 EA-CQFSACVEKLK-----EQGIEP------------------------TDIVAVGVTNQ 97
++ + + K K +Q P + +
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 98 RESTIAWD----KITGEPLYNSIVWLDARTTSTLEKILEVVPNKNKNYLAP-LCGLPLSP 152
++ ++++ +I P+Y++ D R S + + + LP
Sbjct: 444 VKNNVSFNAKDIQI---PVYDTFDGSDLRVLSG-----SISER-----IVDCIIRLP--- 487
Query: 153 YFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWII 188
+ W E Q + T I+
Sbjct: 488 ------VKW---------ETTTQFKA------THIL 502
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC
transporter extracellular solute bindi protein,
D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A*
3oo7_A 3oo9_A 3ooa_A
Length = 415
Score = 34.0 bits (78), Expect = 0.045
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 12/82 (14%)
Query: 71 QFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWD----KITGEPLYNSIV-----WLDA 121
F A K++ G+ P +A + + +D +I G + ++ W D
Sbjct: 164 AFIALARKMQSDGLVP---LAFADKDGWPALGTFDILNLRINGYDYHIKLMKHEVPWTDP 220
Query: 122 RTTSTLEKILEVVPNKNKNYLA 143
T ++ E+ + K
Sbjct: 221 GVTKVFDQWRELAAYQQKGANG 242
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural
genomics, pyrococcus PSI-2, protein structure
initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm
3638}
Length = 373
Score = 32.0 bits (72), Expect = 0.23
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 123 TTSTLEKILEVVPNKNKNYLAPLC---GLPLSPYFSAL-KINWLMNNVPKVKEAIDQNRC 178
T E + E K ++ P C + L + L + ++ + P+ DQ
Sbjct: 94 TEKGEELVAEYGIGKRYDFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEPLHEFDQAYV 153
Query: 179 CIGTVDTWIIWNLTGGKDGGKYITDV 204
T +I T G K I +
Sbjct: 154 TPETTVARVILMHTRGDLENKDIFVL 179
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST
genomics, JCSG, protein structure initiative, PSI-2,
hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Length = 315
Score = 31.8 bits (73), Expect = 0.24
Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 11 LVGAIDEGTSSCRFIVFSALTGKLVA----KHQISLGQTFPTEGWVEQDPMEILAVVNGT 66
+G ID GT++ ++ + + K + LG+ T+G++ ++ M+
Sbjct: 5 RIGVIDMGTNTFHLLITDIVNDRPHTLVNEKSAVGLGKGGITKGFITEEAMD------RA 58
Query: 67 IEACQFSACVEKLKEQGIEPTDIVAVGVTN 96
++ + L ++A G T+
Sbjct: 59 LDTLK--KFRVIL--DEHAVVHVIATG-TS 83
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 30.7 bits (70), Expect = 0.54
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 256 VPISGCLGDQHAALLGQNCLKPGLAKSTYG 285
PIS L + L +KPG STYG
Sbjct: 288 YPISAVLANDDIML----VIKPGEHGSTYG 313
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 30.2 bits (69), Expect = 0.92
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 256 VPISGCLGDQHAALLGQNCLKPGLAKSTYG 285
PIS ++ +PG ST+G
Sbjct: 258 FPISCAAANRDILG----VFEPGSHGSTFG 283
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 29.9 bits (68), Expect = 0.94
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 256 VPISGCLGDQHAALLGQNCLKPGLAKSTYG 285
P+S L D L +KPG STYG
Sbjct: 299 YPVSAVLCDDDIML----TIKPGEHGSTYG 324
>3ghj_A Putative integron gene cassette protein; integron cassette protein,
mobIle metagenome, structural genomics, PSI-2; 1.47A
{Uncultured bacterium}
Length = 141
Score = 28.4 bits (64), Expect = 1.7
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 67 IEACQFSACVEKLKEQGIEPTDIVAVGVTNQR 98
+E + + L+ +G+ V
Sbjct: 93 VEKSEIEPLKKALESKGVSVHGPVNQEWMQAV 124
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.3
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 13/37 (35%)
Query: 37 KHQI-----SLGQTFPTEGWVEQDPMEILAVVNGTIE 68
K + SL + P LA+ T+E
Sbjct: 19 KQALKKLQASLKLYAD-----DSAPA--LAI-KATME 47
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic
binding protein, galactose, GBP, sugar binding protein;
HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Length = 400
Score = 28.6 bits (64), Expect = 2.6
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 71 QFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKI----TGEPLYNSIV-----WLDA 121
+F A + LK++G+E +A+G W+ + G +N++ + D
Sbjct: 144 KFLATCQTLKQKGLEA--PLALG--ENWTQQHLWESVALAVLGPDDWNNLWNGKLKFTDP 199
Query: 122 RTTSTLEKILEVVPNKNKNYLA 143
+ E V+ NK+
Sbjct: 200 KAVRAWEVFGRVLDCANKDAAG 221
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 28.6 bits (65), Expect = 2.8
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 255 GVPISGCLGDQHAALLGQNCLKPGLAKSTYG 285
GVPI L + A PG ST+G
Sbjct: 246 GVPIGAILAREEVA----QSFTPGSHGSTFG 272
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 28.3 bits (64), Expect = 3.5
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 255 GVPISGCLGDQHAALLGQNCLKPGLAKSTYG 285
GVP+ + + A + G +T+G
Sbjct: 259 GVPLGVAVMREEVA----RSMPKGGHGTTFG 285
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 27.9 bits (63), Expect = 4.0
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 255 GVPISGCLGDQHAALLGQNCLKPGLAKSTYG 285
G P+S L Q A + G STYG
Sbjct: 275 GFPVSAMLTTQEIA----SAFHVGSHGSTYG 301
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer,
alpha-beta-alpha, transferase; 2.00A {Neisseria
meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Length = 228
Score = 27.6 bits (62), Expect = 4.3
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 113 YNSIVWLDA----RTTSTLEKILEVVPNKNKNYLAPLCGLPLSPYFSALKIN 160
++ L RT + + + + K K + C + P + L+IN
Sbjct: 97 SGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQIN 148
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Length = 534
Score = 27.8 bits (63), Expect = 4.5
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 76 VEKLKEQGIEPTDIVAV 92
+++ KE I D+V V
Sbjct: 106 IKQAKENEILGIDLVCV 122
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 27.5 bits (62), Expect = 5.1
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 255 GVPISGCLGDQHAALLGQNCLKPGLAKSTYG 285
G+ + + +Q A N L+ G STYG
Sbjct: 253 GLSVGAFVINQKVA---SNSLEAGDHGSTYG 280
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
protein structure initiative, P nysgrc; 2.35A
{Streptomyces avermitilis}
Length = 590
Score = 27.7 bits (62), Expect = 5.5
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 14/79 (17%)
Query: 67 IEACQFSACVEKLKEQ---GIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDART 123
+EA + + +L + V VG ++ ES N+ L
Sbjct: 63 VEASR--TALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRG- 119
Query: 124 TSTLEKILEVVPNKNKNYL 142
++ K++L
Sbjct: 120 -----RVALTFA---KHHL 130
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM
biosynthesis, lyase; 1.84A {Homo sapiens} SCOP:
c.113.1.1
Length = 286
Score = 27.0 bits (60), Expect = 6.7
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 50 GWVEQDPMEILAVVNGTIEACQFSACVEKLKEQGIEPTDI 89
G +E M++L + + + C + +L G+E T I
Sbjct: 15 GHIEGRHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLI 54
>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR
{Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*
Length = 213
Score = 27.0 bits (59), Expect = 7.2
Identities = 18/134 (13%), Positives = 46/134 (34%), Gaps = 14/134 (10%)
Query: 76 VEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNS-IVWLDARTTSTLEKILEVV 134
VE++ ++ E + T + + + PL +W
Sbjct: 3 VEEVSKKFEENVSVDDTTATPKTVLSDSAHFDVKHPLNTKWTLWYTKPAV---------- 52
Query: 135 PNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNLTGG 194
+K++++ L P++ + + + ++ N+P+ E ++ + D W
Sbjct: 53 -DKSESWSDLL--RPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDVRPEWEDEAN 109
Query: 195 KDGGKYITDVSNAS 208
GGK+ +
Sbjct: 110 AKGGKWSFQLRGKG 123
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog;
bacterioferritin comigratory protein, oxidore; HET:
CIT; 2.15A {Sulfolobus solfataricus}
Length = 161
Score = 26.4 bits (59), Expect = 7.3
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 66 TIEACQFSACVEKLKEQGIE 85
T EA F + LK+ +
Sbjct: 46 TREASAFRDNWDLLKDYDVV 65
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase,
hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis}
PDB: 4a1o_A*
Length = 523
Score = 27.1 bits (61), Expect = 7.9
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 76 VEKLKEQGIEPTDIVAV 92
L++ GIE ++V V
Sbjct: 92 AAALEQLGIEAFELVVV 108
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23,
struc genomics, PSI, protein structure initiative;
2.20A {Chromobacterium violaceum} SCOP: c.55.1.5
c.55.1.5
Length = 305
Score = 26.8 bits (59), Expect = 8.5
Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 16/85 (18%)
Query: 10 PLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEA 69
+ +D G + R + ++ G +A + + Q + V T+EA
Sbjct: 11 RYLIGVDGGGTGTRIRLHAS-DGTPLAMAEGGA-------SALSQGIAKSWQAVLSTLEA 62
Query: 70 CQFSACVEKLKEQGIEPTDIVAVGV 94
++ G+ A +
Sbjct: 63 A--------FQQAGLPAAPASACAI 79
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.430
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,567,829
Number of extensions: 268908
Number of successful extensions: 740
Number of sequences better than 10.0: 1
Number of HSP's gapped: 642
Number of HSP's successfully gapped: 50
Length of query: 297
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 204
Effective length of database: 4,105,140
Effective search space: 837448560
Effective search space used: 837448560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.5 bits)