RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9351
(297 letters)
>d2p3ra1 c.55.1.4 (A:2-253) Glycerol kinase {Escherichia coli
[TaxId: 562]}
Length = 252
Score = 220 bits (561), Expect = 5e-72
Identities = 103/263 (39%), Positives = 147/263 (55%), Gaps = 17/263 (6%)
Query: 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQ 71
+ A+D+GT+S R +V +++ Q Q +P GWVE DPMEI A + T+
Sbjct: 5 IVALDQGTTSSRAVVMDH-DANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVL 63
Query: 72 FSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKIL 131
A I I A+G+TNQRE+TI W+K TG+P+YN+IVW RT E +
Sbjct: 64 AKAD--------ISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLK 115
Query: 132 EVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNL 191
+ ++Y+ GL + PYFS K+ W++++V +E + GTVDTW+IW +
Sbjct: 116 R---DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKM 172
Query: 192 TGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGH--FV 249
T G+ ++TD +NASRTML NI TL+WD + IP ++LP + SSE+YG
Sbjct: 173 TQGR---VHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNID 229
Query: 250 SGPLKGVPISGCLGDQHAALLGQ 272
+PISG GDQ AAL GQ
Sbjct: 230 GKGGTRIPISGIAGDQQAALFGQ 252
>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus
casseliflavus [TaxId: 37734]}
Length = 252
Score = 218 bits (557), Expect = 2e-71
Identities = 104/263 (39%), Positives = 144/263 (54%), Gaps = 17/263 (6%)
Query: 12 VGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQ 71
V AID+GT+S R I+F GK + Q Q FP GWVE + EI
Sbjct: 3 VMAIDQGTTSSRAIIFDR-NGKKIGSSQKEFPQYFPKSGWVEHNANEIWN--------SV 53
Query: 72 FSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEKIL 131
S E GI P I +G+TNQRE+T+ WDK TG+P+ N+IVW +++ +++
Sbjct: 54 QSVIAGAFIESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLK 113
Query: 132 EVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKVKEAIDQNRCCIGTVDTWIIWNL 191
+ + + GL + YFSA K+ WL++N+ +E D GT+D+W++W L
Sbjct: 114 V---DGHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKL 170
Query: 192 TGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGFFTIPMDILPTICSSSEIYGHFVSG 251
T G+ ++TD SNASRTML NI LEWD + IP +LP + S+SE+YGH S
Sbjct: 171 TDGQV---HVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSY 227
Query: 252 PL--KGVPISGCLGDQHAALLGQ 272
VPI+G GDQ AAL GQ
Sbjct: 228 HFYGSEVPIAGMAGDQQAALFGQ 250
>d2p3ra2 c.55.1.4 (A:254-500) Glycerol kinase {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 50.3 bits (119), Expect = 6e-08
Identities = 16/23 (69%), Positives = 20/23 (86%)
Query: 274 CLKPGLAKSTYGTGCFLLYNTGN 296
C+K G+AK+TYGTGCF+L NTG
Sbjct: 2 CVKEGMAKNTYGTGCFMLMNTGE 24
>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus
casseliflavus [TaxId: 37734]}
Length = 235
Score = 46.0 bits (108), Expect = 2e-06
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 276 KPGLAKSTYGTGCFLLYNTGNH 297
+ G+ K+TYGTG F++ NTG
Sbjct: 2 EKGMIKNTYGTGAFIVMNTGEE 23
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase
CV2896 {Chromobacterium violaceum [TaxId: 536]}
Length = 114
Score = 42.4 bits (99), Expect = 7e-06
Identities = 16/117 (13%), Positives = 35/117 (29%), Gaps = 23/117 (19%)
Query: 14 AIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEACQFS 73
+D G + R + ++ G +A + + Q + V T+EA
Sbjct: 8 GVDGGGTGTRIRLHAS-DGTPLAMAEGG-------ASALSQGIAKSWQAVLSTLEAA--- 56
Query: 74 ACVEKLKEQGIEPTDIVAVGV------TNQRESTIAWDKITGEPLYNSIVWLDARTT 124
++ G+ A + + R+ ++ + D TT
Sbjct: 57 -----FQQAGLPAAPASACAIGLGLSGVHNRQWAGEFESQAP-GFARLSLATDGYTT 107
>d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex
aeolicus [TaxId: 63363]}
Length = 126
Score = 33.8 bits (77), Expect = 0.008
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 12 VGAIDEGTSSCRFIVFSALTGKLV----AKHQISLGQTFPTEGWVEQDPMEILAVVNGTI 67
V +ID G+ S R + GKL SLG G +++D +E I
Sbjct: 5 VASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEET------I 58
Query: 68 EACQFSACVEKLKEQGIEPTDIVA 91
+ + + + E +E VA
Sbjct: 59 QVLK--EYKKLIDEFKVERVKAVA 80
>d2e1za1 c.55.1.2 (A:4-192) Propionate kinase {Salmonella
typhimurium [TaxId: 90371]}
Length = 189
Score = 31.5 bits (71), Expect = 0.065
Identities = 31/160 (19%), Positives = 50/160 (31%), Gaps = 25/160 (15%)
Query: 10 PLVGAIDEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEGWVEQDPMEILAVVNGTIEA 69
P+V I+ G+SS +F V T ++ T + D LA N E
Sbjct: 2 PVVLVINCGSSSIKFSVLDVATCDVLMAGIADGMNTENAFLSINGDKPINLAHSN--YED 59
Query: 70 CQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAWDKITGEPLYNSIVWLDARTTSTLEK 129
+ E K + ++ + + G L+ V + ++
Sbjct: 60 ALKAIAFELEKRDLTDSVALIGHRIAH------------GGELFTQSVIITD---EIIDN 104
Query: 130 ILEVVPNKNKNYLAPLCGLPLSPYFSALKINWLMNNVPKV 169
I V P LAPL A + L V +V
Sbjct: 105 IRRVSP------LAPLHNYANLSGIDAARH--LFPAVRQV 136
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 31.0 bits (70), Expect = 0.069
Identities = 8/76 (10%), Positives = 27/76 (35%), Gaps = 10/76 (13%)
Query: 16 DEGTSSCRFIVFSALTGKLVAKHQISLGQTFPTEG-----WVEQD----PMEILAVVNGT 66
D+GT R ++ + + +L+ ++ D +++ + +
Sbjct: 56 DDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKSIHITAMDTEDQGVKVFLISASS 115
Query: 67 IEACQ-FSACVEKLKE 81
+ Q ++A ++
Sbjct: 116 KDTGQLYAALHHRILA 131
>d1u6za2 c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escherichia
coli [TaxId: 562]}
Length = 124
Score = 29.5 bits (66), Expect = 0.21
Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 13 GAIDEGTSSCRFIVFSALTGKLV----AKHQISLGQTFPTEGWVEQDPMEIL 60
A+D G++S ++ + G + K ++ L + + ++ M
Sbjct: 3 AAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRG 54
>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus
thermophilus [TaxId: 274]}
Length = 119
Score = 26.0 bits (57), Expect = 3.1
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 70 CQFSACVEKLKEQGIEPTDIVAVGVTNQRESTI 102
+K G++ D++ G RE I
Sbjct: 53 LAALDAAKKAMAYGMQSVDVIVRGTGAGREQAI 85
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 26.0 bits (56), Expect = 7.3
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 79 LKEQGIEPTDIVAVGVTNQRESTIAW 104
+K G+ + V N + +
Sbjct: 64 MKRYGLNTNHRIVVCSENSLQFFMPV 89
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 26.0 bits (56), Expect = 7.7
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 68 EACQFSACVEKLKEQGIEPTDIVAVGVTNQRESTIAW 104
A + L+ G+ D VA N A+
Sbjct: 49 RARRLMG---GLRALGVGVGDRVATLGFNHFRHLEAY 82
>d1ukga_ b.29.1.1 (A:) Legume lectin {Bloodwood tree (Pterocarpus
angolensis) [TaxId: 182271]}
Length = 241
Score = 25.5 bits (55), Expect = 8.3
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 24 FIVFSALTGKLVAKHQISLGQTFPTE 49
+ FSA +G+ H + +F +
Sbjct: 212 RVGFSAASGEQYQTHTL-ESWSFTST 236
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 25.8 bits (56), Expect = 8.8
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 79 LKEQGIEPTDIVAVGVTNQRESTIAW 104
L + GI+ D+VA+ + E+ +A
Sbjct: 120 LLDLGIKKGDVVAIYMPMVPEAAVAM 145
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.430
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,130,769
Number of extensions: 52550
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 16
Length of query: 297
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,240,546
Effective search space: 262995752
Effective search space used: 262995752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)