BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9352
(146 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|193702257|ref|XP_001946012.1| PREDICTED: cryptochrome-1-like [Acyrthosiphon pisum]
Length = 535
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/141 (62%), Positives = 108/141 (76%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
E VHW RKGMRLHDNPA + KN G+ L+P+YILDP+FRK++R G NRWRFLQ
Sbjct: 11 ETTVHWFRKGMRLHDNPAFKLSCEAKNSNGERYKLRPIYILDPYFRKYIRAGANRWRFLQ 70
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
QSL DLD R LG+RLYV++G P EVFPD+F WN+KLLT+E D EPYA++RD VE +
Sbjct: 71 QSLVDLDTTLRKLGTRLYVIRGLPHEVFPDLFAKWNVKLLTFELDTEPYARERDNQVEQL 130
Query: 126 AKEYKVKVEQHVSHTLYNTNL 146
A+++ VKVEQ VSHT+YNT L
Sbjct: 131 ARKHGVKVEQKVSHTIYNTEL 151
>gi|195148597|ref|XP_002015257.1| GL19602 [Drosophila persimilis]
gi|194107210|gb|EDW29253.1| GL19602 [Drosophila persimilis]
Length = 204
Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/146 (52%), Positives = 103/146 (70%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR 60
M T VHW RKG+R+HDNPAL + N + ++P++ILDP +M+VG NR
Sbjct: 1 MDATHATLVHWFRKGLRVHDNPALTQIFSAANAAPEKFHVRPIFILDPGILDWMQVGANR 60
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
WRFLQQ+L DLDQ+ R L SRL+VV+GKP +VFP +FK+W ++LLT+E DIEPYA +RD
Sbjct: 61 WRFLQQTLHDLDQQLRKLNSRLFVVRGKPVDVFPRVFKSWRVELLTFETDIEPYALQRDA 120
Query: 121 LVEDMAKEYKVKVEQHVSHTLYNTNL 146
V+ +AK +KV+ H SHT+YN L
Sbjct: 121 AVQKLAKAEGIKVDTHCSHTIYNPEL 146
>gi|195433475|ref|XP_002064736.1| GK15094 [Drosophila willistoni]
gi|194160821|gb|EDW75722.1| GK15094 [Drosophila willistoni]
Length = 546
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 77/143 (53%), Positives = 102/143 (71%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
T +HW RKG+R+HDNPAL+ + ++P++ILDP +M+VG NRWRF
Sbjct: 5 TKATLIHWFRKGLRVHDNPALMQIFTTAQAAPKKFYVRPIFILDPGILDWMQVGANRWRF 64
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
LQQ+L DLD++ R L SRLYVV+GKP EVFP +FK+WN++LLT+E DIEPYA+ RD V+
Sbjct: 65 LQQTLDDLDKQLRQLNSRLYVVRGKPIEVFPRLFKSWNVELLTFESDIEPYAQTRDAAVQ 124
Query: 124 DMAKEYKVKVEQHVSHTLYNTNL 146
+AK +KVE H SHT+YN L
Sbjct: 125 KIAKAAGIKVETHCSHTIYNPEL 147
>gi|195387030|ref|XP_002052207.1| GJ17431 [Drosophila virilis]
gi|194148664|gb|EDW64362.1| GJ17431 [Drosophila virilis]
Length = 541
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/146 (52%), Positives = 103/146 (70%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR 60
M VHW RKG+R+HDNPAL N + ++P++ILDP +M+VG NR
Sbjct: 1 MSAKRRTLVHWFRKGLRVHDNPALSQIFNDARASPEKFYVRPIFILDPGILDWMQVGANR 60
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
WRFLQQSL DLD+K + L SRLY+V+GKP +VFP++F+ WN++LLT+E DIEPYA +RD
Sbjct: 61 WRFLQQSLVDLDKKLKELNSRLYIVRGKPVDVFPELFERWNVQLLTFESDIEPYALQRDT 120
Query: 121 LVEDMAKEYKVKVEQHVSHTLYNTNL 146
V+ +A E+ VKV+ H SHT+YN L
Sbjct: 121 TVQKIASEHGVKVDTHCSHTIYNPEL 146
>gi|158293404|ref|XP_314748.3| AGAP008651-PA [Anopheles gambiae str. PEST]
gi|157016689|gb|EAA10141.3| AGAP008651-PA [Anopheles gambiae str. PEST]
Length = 556
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 75/138 (54%), Positives = 103/138 (74%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
E VHW RKG+R+HDNPAL A++ L+P+++LDP RK++RVGPNRWRFLQ
Sbjct: 5 ETIVHWFRKGLRIHDNPALTVAVDKVRANPAKYCLRPIFVLDPGIRKWLRVGPNRWRFLQ 64
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
Q+LA+LD+ R++ SRLYVV+G P EVFP +F WN+ LLT+E+DIEPYA KRD VE+
Sbjct: 65 QTLANLDENLRSINSRLYVVRGNPVEVFPKLFADWNVSLLTYEHDIEPYAVKRDSTVEEQ 124
Query: 126 AKEYKVKVEQHVSHTLYN 143
A+++ V+V SHT+++
Sbjct: 125 ARKHWVEVHIEKSHTIFD 142
>gi|157115313|ref|XP_001658195.1| DNA photolyase [Aedes aegypti]
gi|108883518|gb|EAT47743.1| AAEL001175-PA [Aedes aegypti]
Length = 553
Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 76/143 (53%), Positives = 106/143 (74%)
Query: 3 GTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWR 62
+ + VHW RKG+RLHDNPALL+AI + Q L+P++ILDP +++RVGPNRWR
Sbjct: 2 SSQQTVVHWFRKGLRLHDNPALLAAIRRCRDSPQQYALRPVFILDPAIVQWLRVGPNRWR 61
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FLQQ+LADLD+ R + SRLYVV+G P +VFP +F+ WN+ LT+E+DIEPY+ KRD V
Sbjct: 62 FLQQTLADLDRNLRKINSRLYVVRGNPVDVFPKLFQEWNVSFLTFEHDIEPYSIKRDATV 121
Query: 123 EDMAKEYKVKVEQHVSHTLYNTN 145
E+ AK++ VK++ S T+Y+ +
Sbjct: 122 EEQAKKHGVKIQIEKSLTIYDPD 144
>gi|194759941|ref|XP_001962202.1| GF14557 [Drosophila ananassae]
gi|190615899|gb|EDV31423.1| GF14557 [Drosophila ananassae]
Length = 539
Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 78/138 (56%), Positives = 99/138 (71%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+R+HDNPAL N ++P++ILDP +M+VG NRWRFLQQ+L
Sbjct: 9 VHWFRKGLRVHDNPALSQIFKVANTAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQTL 68
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLDQ+ + LGSRL+VV+GKP EVFP IFK+W ++LLT+E DIEPY+ RD V+ +AK
Sbjct: 69 HDLDQQLQKLGSRLFVVRGKPAEVFPRIFKSWRVELLTFETDIEPYSLARDSAVQKLAKS 128
Query: 129 YKVKVEQHVSHTLYNTNL 146
VKVE H SHT+YN L
Sbjct: 129 DGVKVETHCSHTIYNPEL 146
>gi|194878837|ref|XP_001974136.1| GG21562 [Drosophila erecta]
gi|190657323|gb|EDV54536.1| GG21562 [Drosophila erecta]
Length = 540
Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 77/138 (55%), Positives = 99/138 (71%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+R+HDNPAL + N ++P++ILDP +M+VG NRWRFLQQ+L
Sbjct: 9 VHWFRKGLRVHDNPALSHIFSAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQAL 68
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD + R LGSRL+VV+GKP EVFP IFK+W +++LT+E DIEPY+ RD V+ +AK
Sbjct: 69 EDLDNQLRKLGSRLFVVRGKPAEVFPRIFKSWRVEILTFETDIEPYSLSRDASVQKLAKA 128
Query: 129 YKVKVEQHVSHTLYNTNL 146
VKVE H SHT+YN L
Sbjct: 129 AGVKVETHCSHTIYNPEL 146
>gi|125986217|ref|XP_001356872.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
gi|54645198|gb|EAL33938.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
Length = 533
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/138 (54%), Positives = 101/138 (73%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+R+HDNPAL + N + ++P++ILDP +M+VG NRWRFLQQ+L
Sbjct: 9 VHWFRKGLRVHDNPALTQIFSAANAAPEKFHVRPIFILDPGILDWMQVGANRWRFLQQTL 68
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLDQ+ R L SRL+VV+GKP +VFP +FK+W ++LLT+E DIEPYA +RD V+ +AK
Sbjct: 69 HDLDQQLRKLNSRLFVVRGKPVDVFPRVFKSWRVELLTFETDIEPYALQRDAAVQKLAKA 128
Query: 129 YKVKVEQHVSHTLYNTNL 146
+KV+ H SHT+YN L
Sbjct: 129 EGIKVDTHCSHTIYNPEL 146
>gi|312378885|gb|EFR25332.1| hypothetical protein AND_09443 [Anopheles darlingi]
Length = 558
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 101/138 (73%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
E +HW RKG+R+HDNPAL A++ + L+P+++LDP RK++RVGPNRWRFLQ
Sbjct: 5 ETIIHWFRKGLRIHDNPALSLAVDKVRQNPTKYCLRPIFVLDPAIRKWLRVGPNRWRFLQ 64
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
Q+L +LD+ R + SRLYVV+G P ++FP++F WN+ LLT+E+DIEPYA +RD VE
Sbjct: 65 QTLVNLDENLRTINSRLYVVRGNPVQIFPELFDRWNVSLLTYEHDIEPYAVQRDKTVEGH 124
Query: 126 AKEYKVKVEQHVSHTLYN 143
A+E+ V VSHT+++
Sbjct: 125 AREHNVTTHVEVSHTIFH 142
>gi|1304062|dbj|BAA12067.1| photolyase [Drosophila melanogaster]
Length = 540
Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 97/138 (70%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+RLHDNPAL N ++P++ILDP +M+VG NRWRFLQQ+L
Sbjct: 9 VHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQTL 68
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD + R L SRL+VV+GKP EVFP IFK+W +++LT+E DIEPY+ RD V+ +AK
Sbjct: 69 EDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKA 128
Query: 129 YKVKVEQHVSHTLYNTNL 146
V+VE H SHT+YN L
Sbjct: 129 EGVRVETHCSHTIYNPEL 146
>gi|195119085|ref|XP_002004062.1| GI19664 [Drosophila mojavensis]
gi|193914637|gb|EDW13504.1| GI19664 [Drosophila mojavensis]
Length = 532
Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 72/138 (52%), Positives = 100/138 (72%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+HW RKG+R+HDNPAL+ N ++P+++LDP +M+VG NRWRFLQQSL
Sbjct: 9 IHWFRKGLRVHDNPALIQIFNKAGASPDKFSVRPIFVLDPGILDWMKVGANRWRFLQQSL 68
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD+ + L SRLY+V+GKP ++FP++F WN++LLT+E DIEPYA KRD V+D+A
Sbjct: 69 LDLDKNLKELNSRLYIVRGKPVDIFPNLFDRWNVELLTFETDIEPYAVKRDKAVQDIAAA 128
Query: 129 YKVKVEQHVSHTLYNTNL 146
+ VKV+ H SHT+YN +
Sbjct: 129 HGVKVDTHCSHTIYNPEI 146
>gi|17137248|ref|NP_477188.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
gi|24585455|ref|NP_724274.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
gi|442628599|ref|NP_001260632.1| (6-4)-photolyase, isoform C [Drosophila melanogaster]
gi|442628601|ref|NP_001260633.1| (6-4)-photolyase, isoform D [Drosophila melanogaster]
gi|7298691|gb|AAF53904.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
gi|22946921|gb|AAN11080.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
gi|201065459|gb|ACH92139.1| FI01404p [Drosophila melanogaster]
gi|440213996|gb|AGB93167.1| (6-4)-photolyase, isoform C [Drosophila melanogaster]
gi|440213997|gb|AGB93168.1| (6-4)-photolyase, isoform D [Drosophila melanogaster]
Length = 540
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 97/138 (70%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+RLHDNPAL N ++P++ILDP +M+VG NRWRFLQQ+L
Sbjct: 9 VHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQTL 68
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD + R L SRL+VV+GKP EVFP IFK+W +++LT+E DIEPY+ RD V+ +AK
Sbjct: 69 EDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKA 128
Query: 129 YKVKVEQHVSHTLYNTNL 146
V+VE H SHT+YN L
Sbjct: 129 EGVRVETHCSHTIYNPEL 146
>gi|211939158|pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion
gi|211939161|pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired
Ds Dna
gi|225697970|pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double
Stranded Dna Containing A T(6-4)c Photolesion
gi|240104285|pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion And F0 Cofactor
gi|289526487|pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion
gi|289526490|pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(6-4)c Lesion
Length = 543
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 97/138 (70%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+RLHDNPAL N ++P++ILDP +M+VG NRWRFLQQ+L
Sbjct: 32 VHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTL 91
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD + R L SRL+VV+GKP EVFP IFK+W +++LT+E DIEPY+ RD V+ +AK
Sbjct: 92 EDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKA 151
Query: 129 YKVKVEQHVSHTLYNTNL 146
V+VE H SHT+YN L
Sbjct: 152 EGVRVETHCSHTIYNPEL 169
>gi|261278636|pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion
Length = 543
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 97/138 (70%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+RLHDNPAL N ++P++ILDP +M+VG NRWRFLQQ+L
Sbjct: 32 VHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTL 91
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD + R L SRL+VV+GKP EVFP IFK+W +++LT+E DIEPY+ RD V+ +AK
Sbjct: 92 EDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKA 151
Query: 129 YKVKVEQHVSHTLYNTNL 146
V+VE H SHT+YN L
Sbjct: 152 EGVRVETHCSHTIYNPEL 169
>gi|19528415|gb|AAL90322.1| RE11660p [Drosophila melanogaster]
Length = 540
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 97/138 (70%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+RLHDNPAL N ++P++ILDP +M+VG NRWRFLQQ+L
Sbjct: 9 VHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTL 68
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD + R L SRL+VV+GKP EVFP IFK+W +++LT+E DIEPY+ RD V+ +AK
Sbjct: 69 EDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKA 128
Query: 129 YKVKVEQHVSHTLYNTNL 146
V+VE H SHT+YN L
Sbjct: 129 EGVRVETHCSHTIYNPEL 146
>gi|261278633|pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion And
Cofactor F0
Length = 543
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 97/138 (70%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+RLHDNPAL N ++P++ILDP +M+VG NRWRFLQQ+L
Sbjct: 32 VHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTL 91
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD + R L SRL+VV+GKP EVFP IFK+W +++LT+E DIEPY+ RD V+ +AK
Sbjct: 92 EDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKA 151
Query: 129 YKVKVEQHVSHTLYNTNL 146
V+VE H SHT+YN L
Sbjct: 152 EGVRVETHCSHTIYNPEL 169
>gi|195351886|ref|XP_002042448.1| GM23319 [Drosophila sechellia]
gi|194124317|gb|EDW46360.1| GM23319 [Drosophila sechellia]
Length = 540
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 97/138 (70%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+R+HDNPAL N ++P++ILDP +M+VG NRWRFLQQ+L
Sbjct: 9 VHWFRKGLRVHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQTL 68
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD + R L SRL+VV+GKP EVFP IFK+W +++LT+E DIEPY+ RD V+ +AK
Sbjct: 69 EDLDNQLRKLDSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSLTRDAAVQKLAKA 128
Query: 129 YKVKVEQHVSHTLYNTNL 146
VKVE H SHT+YN L
Sbjct: 129 EGVKVETHCSHTIYNPEL 146
>gi|195580452|ref|XP_002080051.1| GD21692 [Drosophila simulans]
gi|194192060|gb|EDX05636.1| GD21692 [Drosophila simulans]
Length = 540
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 97/138 (70%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+R+HDNPAL N ++P++ILDP +M+VG NRWRFLQQ+L
Sbjct: 9 VHWFRKGLRVHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQTL 68
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD + R L SRL+VV+GKP EVFP IFK+W +++LT+E DIEPY+ RD V+ +AK
Sbjct: 69 EDLDNQLRKLDSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSLTRDAAVQKLAKA 128
Query: 129 YKVKVEQHVSHTLYNTNL 146
VKVE H SHT+YN L
Sbjct: 129 EGVKVETHCSHTIYNPEL 146
>gi|195030094|ref|XP_001987903.1| GH10854 [Drosophila grimshawi]
gi|193903903|gb|EDW02770.1| GH10854 [Drosophila grimshawi]
Length = 538
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 98/138 (71%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+R+HDNPAL + ++P++ILDP +M+VG NRWRFLQQSL
Sbjct: 9 VHWFRKGLRVHDNPALFQIFEVARAAPEKFYVRPIFILDPGILDWMQVGANRWRFLQQSL 68
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+DLDQ+ RAL +RL+VV+GKP ++FP +F+ W ++LLT+E DIEPYA RD V+ +A
Sbjct: 69 SDLDQQLRALNTRLFVVRGKPVDIFPGLFERWQVQLLTYETDIEPYAVLRDAAVQQLAAS 128
Query: 129 YKVKVEQHVSHTLYNTNL 146
VKV+ H SHT+YN L
Sbjct: 129 QGVKVDTHCSHTIYNPEL 146
>gi|195484786|ref|XP_002090823.1| GE12583 [Drosophila yakuba]
gi|194176924|gb|EDW90535.1| GE12583 [Drosophila yakuba]
Length = 540
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 98/138 (71%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+R+HDNPAL + N ++P++ILDP +M+VG NRWRFLQQ+L
Sbjct: 9 VHWFRKGLRVHDNPALSQIFSAANAAPGKYFVRPIFILDPGILDWMQVGANRWRFLQQTL 68
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD + R L SRL+VV+GKP +VFP IFK+W +++L++E DIEPY+ RD V+ +AK
Sbjct: 69 EDLDNQLRKLNSRLFVVRGKPADVFPRIFKSWRVEILSFETDIEPYSMTRDAAVQKLAKT 128
Query: 129 YKVKVEQHVSHTLYNTNL 146
VKVE + SHT+YN L
Sbjct: 129 EGVKVETYCSHTIYNPEL 146
>gi|390339199|ref|XP_788938.2| PREDICTED: cryptochrome-2-like [Strongylocentrotus purpuratus]
Length = 524
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 76/137 (55%), Positives = 102/137 (74%), Gaps = 6/137 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+HW RKG+R+HDNPALL+AI +G + +P++ILDPHF + +VG NRWRFL ++
Sbjct: 6 TIHWFRKGLRIHDNPALLTAI-----QGTKVF-RPIFILDPHFIESEKVGINRWRFLLET 59
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD FRALG+RL+VV+G P VFP+IFK WN+ LT+E D EPYA++RD V ++AK
Sbjct: 60 LQDLDYSFRALGTRLFVVRGNPTTVFPEIFKKWNVTRLTFEVDTEPYARRRDQEVIELAK 119
Query: 128 EYKVKVEQHVSHTLYNT 144
+ V+V VSHTLY+T
Sbjct: 120 KNDVEVITKVSHTLYDT 136
>gi|321474453|gb|EFX85418.1| DNA photolyase 1 [Daphnia pulex]
Length = 524
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 96/136 (70%), Gaps = 2/136 (1%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+HW RKG+RLHDNPALL+A+ E + L+P++ILDP F K +VGPNRWRFL QS
Sbjct: 7 VIHWFRKGLRLHDNPALLNALEKVGE--SHYELRPVFILDPWFVKNAKVGPNRWRFLVQS 64
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD + +GSRL++++G P E F +FK WN+K LT+E DIEPYAK RD ++ +A
Sbjct: 65 LQDLDDNLKKIGSRLFILKGSPTETFKKVFKEWNVKKLTFEVDIEPYAKTRDEEIKKLAD 124
Query: 128 EYKVKVEQHVSHTLYN 143
+ V V VSHT+Y+
Sbjct: 125 HHSVTVVAKVSHTIYD 140
>gi|351696947|gb|EHA99865.1| Cryptochrome-2 [Heterocephalus glaber]
Length = 593
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/144 (52%), Positives = 96/144 (66%), Gaps = 6/144 (4%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRW 61
G C+VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRW
Sbjct: 18 GAEGACSVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRW 71
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
RFL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD
Sbjct: 72 RFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAA 131
Query: 122 VEDMAKEYKVKVEQHVSHTLYNTN 145
+ MAKE V+V SHTLY+ +
Sbjct: 132 IMKMAKEAGVEVVTENSHTLYDLD 155
>gi|348558770|ref|XP_003465189.1| PREDICTED: cryptochrome-2 [Cavia porcellus]
Length = 593
Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/144 (52%), Positives = 96/144 (66%), Gaps = 6/144 (4%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRW 61
G C+VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRW
Sbjct: 18 GAEGACSVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRW 71
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
RFL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD
Sbjct: 72 RFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAA 131
Query: 122 VEDMAKEYKVKVEQHVSHTLYNTN 145
+ MAKE V+V SHTLY+ +
Sbjct: 132 IMKMAKEAGVEVVTENSHTLYDLD 155
>gi|27312016|ref|NP_034093.1| cryptochrome-2 [Mus musculus]
gi|164519087|ref|NP_001106804.1| cryptochrome-2 [Mus musculus]
gi|81882058|sp|Q9R194.1|CRY2_MOUSE RecName: Full=Cryptochrome-2
gi|5670009|gb|AAD46561.1|AF156987_1 cryptochrome 2 [Mus musculus]
gi|26334673|dbj|BAC31037.1| unnamed protein product [Mus musculus]
gi|45219826|gb|AAH66799.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
gi|56078856|gb|AAH54794.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
gi|74227568|dbj|BAE21836.1| unnamed protein product [Mus musculus]
gi|148695658|gb|EDL27605.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
gi|148695659|gb|EDL27606.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
Length = 592
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 96/145 (66%), Gaps = 6/145 (4%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR 60
MG +VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NR
Sbjct: 16 MGADGASSVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINR 69
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
WRFL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD
Sbjct: 70 WRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDA 129
Query: 121 LVEDMAKEYKVKVEQHVSHTLYNTN 145
+ MAKE V+V SHTLY+ +
Sbjct: 130 AIMKMAKEAGVEVVTENSHTLYDLD 154
>gi|50510573|dbj|BAD32272.1| mKIAA0658 protein [Mus musculus]
Length = 584
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 96/145 (66%), Gaps = 6/145 (4%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR 60
MG +VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NR
Sbjct: 8 MGADGASSVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINR 61
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
WRFL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD
Sbjct: 62 WRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDA 121
Query: 121 LVEDMAKEYKVKVEQHVSHTLYNTN 145
+ MAKE V+V SHTLY+ +
Sbjct: 122 AIMKMAKEAGVEVVTENSHTLYDLD 146
>gi|405975335|gb|EKC39908.1| Cryptochrome-1 [Crassostrea gigas]
Length = 510
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 95/137 (69%), Gaps = 6/137 (4%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
CA+HW RKG+RLHDNPAL +A ++ +KP++ILDP F VG NRWRFL Q
Sbjct: 4 CAIHWFRKGLRLHDNPALQAACKVADD------VKPVFILDPWFANNANVGVNRWRFLLQ 57
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
+L +LD+ + + SRLY+++GKP +VFP +FK W + LT+E DIEPYA RD ++ +A
Sbjct: 58 TLQNLDENLKKINSRLYIIKGKPADVFPKLFKNWGVSHLTFEEDIEPYALTRDSEIKKLA 117
Query: 127 KEYKVKVEQHVSHTLYN 143
E+ VKV VSHTL++
Sbjct: 118 DEHNVKVTSCVSHTLFD 134
>gi|344247813|gb|EGW03917.1| Cryptochrome-2 [Cricetulus griseus]
Length = 577
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 96/145 (66%), Gaps = 6/145 (4%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR 60
MG +VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NR
Sbjct: 1 MGADGASSVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINR 54
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
WRFL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD
Sbjct: 55 WRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDA 114
Query: 121 LVEDMAKEYKVKVEQHVSHTLYNTN 145
+ MAKE V+V SHTLY+ +
Sbjct: 115 AIMKMAKEAGVEVVTENSHTLYDLD 139
>gi|149022681|gb|EDL79575.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
gi|149022682|gb|EDL79576.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
gi|183985822|gb|AAI66416.1| Cryptochrome 2 (photolyase-like) [Rattus norvegicus]
Length = 594
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 96/145 (66%), Gaps = 6/145 (4%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR 60
MG +VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NR
Sbjct: 16 MGADGASSVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINR 69
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
WRFL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD
Sbjct: 70 WRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDA 129
Query: 121 LVEDMAKEYKVKVEQHVSHTLYNTN 145
+ MAKE V+V SHTLY+ +
Sbjct: 130 AIMKMAKEAGVEVVTENSHTLYDLD 154
>gi|19173768|ref|NP_596896.1| cryptochrome-2 [Rattus norvegicus]
gi|81867613|sp|Q923I8.1|CRY2_RAT RecName: Full=Cryptochrome-2
gi|15072464|gb|AAK61419.1| cryptochrome 2 [Rattus norvegicus]
Length = 594
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 96/145 (66%), Gaps = 6/145 (4%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR 60
MG +VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NR
Sbjct: 16 MGADGASSVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINR 69
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
WRFL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD
Sbjct: 70 WRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDA 129
Query: 121 LVEDMAKEYKVKVEQHVSHTLYNTN 145
+ MAKE V+V SHTLY+ +
Sbjct: 130 AIMKMAKEAGVEVVTENSHTLYDLD 154
>gi|187608706|ref|NP_001120012.1| uncharacterized protein LOC100144974 [Xenopus (Silurana)
tropicalis]
gi|165970470|gb|AAI58310.1| LOC100144974 protein [Xenopus (Silurana) tropicalis]
Length = 531
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 98/135 (72%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++HW RKG+RLHDNPALL+A+N E L P++ILDP F + M+V NRWRFL ++
Sbjct: 5 SIHWFRKGLRLHDNPALLAAMNDCAE------LYPIFILDPWFPRNMKVSVNRWRFLIEA 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD+ + + SRL+VV+GKP EVFP +FK W + LT+E D EPY+++RD VE +A
Sbjct: 59 LKDLDENLKKINSRLFVVRGKPTEVFPLLFKKWKVTRLTFEVDTEPYSRQRDADVEKLAA 118
Query: 128 EYKVKVEQHVSHTLY 142
E+ V+V Q VS+TLY
Sbjct: 119 EHNVQVIQKVSNTLY 133
>gi|147906624|ref|NP_001081421.1| 6-4 photolyase [Xenopus laevis]
gi|8809676|dbj|BAA97126.1| 6-4 photolyase [Xenopus laevis]
gi|213625040|gb|AAI69683.1| 6-4 photolyase [Xenopus laevis]
gi|213627768|gb|AAI69685.1| 6-4 photolyase [Xenopus laevis]
Length = 526
Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 99/138 (71%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++HW RKG+RLHDNPALL+A+ E L P++ILDP F K M+V NRWRFL +
Sbjct: 5 SIHWFRKGLRLHDNPALLAAMKDCAE------LHPIFILDPWFPKNMQVSVNRWRFLIDA 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD+ + + SRL+VV+GKP EVFP +FK W + LT+E DIEPY+++RD VE +A
Sbjct: 59 LKDLDENLKKINSRLFVVRGKPAEVFPLLFKKWKVTRLTFEVDIEPYSRQRDAEVEKLAA 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E+ V+V Q VS+TLY+ +
Sbjct: 119 EHDVQVIQKVSNTLYDID 136
>gi|387015302|gb|AFJ49770.1| Cryptochrome-2-like [Crotalus adamanteus]
Length = 590
Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 93/142 (65%), Gaps = 6/142 (4%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRW 61
G C+VHW R+G+RLHDNPAL +AI + ++ +YILDP F VG NRW
Sbjct: 13 SGGGCCSVHWFRRGLRLHDNPALQAAIR------EATSVRCIYILDPWFAASSAVGINRW 66
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
RFL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ ++RD
Sbjct: 67 RFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTHLTFEYDSEPFGEERDAA 126
Query: 122 VEDMAKEYKVKVEQHVSHTLYN 143
+ +AKE VKV SHTLY+
Sbjct: 127 IVKLAKEAGVKVTTENSHTLYD 148
>gi|193211374|ref|NP_001123208.1| cryptochrome-2 [Ovis aries]
gi|156763811|gb|ABS44876.1| cryptochrome 2 [Ovis aries]
Length = 596
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 97/143 (67%), Gaps = 6/143 (4%)
Query: 3 GTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWR 62
G +VHW RKG+RLHDNPALL+A+ +G + + + +YILDP F VG NRWR
Sbjct: 22 GDGASSVHWFRKGLRLHDNPALLAAV-----RGAHCV-RCVYILDPWFAASSSVGINRWR 75
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FL QSL DLD+ R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD +
Sbjct: 76 FLLQSLEDLDRSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 135
Query: 123 EDMAKEYKVKVEQHVSHTLYNTN 145
MAKE V+V SHTLY+ +
Sbjct: 136 MKMAKEAGVEVVTENSHTLYDLD 158
>gi|327259731|ref|XP_003214689.1| PREDICTED: cryptochrome-2-like [Anolis carolinensis]
Length = 586
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 94/144 (65%), Gaps = 6/144 (4%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRW 61
G C+VHW R+G+RLHDNPAL +AI ++ +YILDP F VG NRW
Sbjct: 6 GPLGRCSVHWFRRGLRLHDNPALQAAIRDGGP------VRCIYILDPWFAASSSVGINRW 59
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
RFL QSL DLD R LGSRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD
Sbjct: 60 RFLLQSLEDLDNSLRKLGSRLFVVRGQPTDVFPRLFKEWRVTRLTFEYDSEPFGKERDAA 119
Query: 122 VEDMAKEYKVKVEQHVSHTLYNTN 145
+ +AKE V+V SHTLY+ +
Sbjct: 120 IVKLAKEAGVEVITENSHTLYDLD 143
>gi|348523572|ref|XP_003449297.1| PREDICTED: cryptochrome-2-like [Oreochromis niloticus]
Length = 672
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/136 (52%), Positives = 93/136 (68%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPAL A+N + ++ +YILDP F VG NRWRFL ++
Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADA------VRCVYILDPFFAGAANVGINRWRFLLEA 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD + L SRL+VV+G+P +VFP +FK WN+ LT+EYD EPY K+RDG + MA+
Sbjct: 59 LEDLDSSLKKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEYDPEPYGKERDGAIIKMAQ 118
Query: 128 EYKVKVEQHVSHTLYN 143
E+ V+ SHTLYN
Sbjct: 119 EFGVETIVRNSHTLYN 134
>gi|147901075|ref|NP_001083936.1| cryptochrome 2 (photolyase-like) [Xenopus laevis]
gi|50415857|gb|AAH77381.1| Cry2 protein [Xenopus laevis]
Length = 570
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 97/146 (66%), Gaps = 7/146 (4%)
Query: 1 MGGTPE-CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPN 59
M G P +VHW RKG+RLHDNPALL+A+ N ++ +YILDP F G N
Sbjct: 1 MEGKPSVSSVHWFRKGLRLHDNPALLAALRGANS------VRCVYILDPWFAASSSGGVN 54
Query: 60 RWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
RWRFL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD
Sbjct: 55 RWRFLLQSLEDLDSSLRKLNSRLFVVRGQPADVFPKLFKEWGVSRLTFEYDSEPFGKERD 114
Query: 120 GLVEDMAKEYKVKVEQHVSHTLYNTN 145
++ +AKE V+V SHTLY+++
Sbjct: 115 AVIMKLAKEAGVEVIVENSHTLYDSD 140
>gi|395815587|ref|XP_003781307.1| PREDICTED: cryptochrome-2 [Otolemur garnettii]
Length = 612
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 94/138 (68%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRWRFL QS
Sbjct: 43 SVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRWRFLLQS 96
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD + MAK
Sbjct: 97 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 156
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V SHTLY+ +
Sbjct: 157 EAGVEVVTENSHTLYDLD 174
>gi|3327130|dbj|BAA31633.1| KIAA0658 protein [Homo sapiens]
Length = 589
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 95/144 (65%), Gaps = 6/144 (4%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRW 61
G +VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRW
Sbjct: 14 GTDSASSVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRW 67
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
RFL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD
Sbjct: 68 RFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAA 127
Query: 122 VEDMAKEYKVKVEQHVSHTLYNTN 145
+ MAKE V+V SHTLY+ +
Sbjct: 128 IMKMAKEAGVEVVTENSHTLYDLD 151
>gi|118572252|sp|Q49AN0.2|CRY2_HUMAN RecName: Full=Cryptochrome-2
gi|27469701|gb|AAH41814.1| Cryptochrome 2 (photolyase-like) [Homo sapiens]
gi|119588435|gb|EAW68029.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|119588436|gb|EAW68030.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|121647012|gb|ABM64210.1| photolyase-like cryptochrome 2 [Homo sapiens]
gi|167996599|gb|ACA14134.1| growth-inhibiting protein 37 [Homo sapiens]
gi|168267486|dbj|BAG09799.1| cryptochrome-2 [synthetic construct]
gi|325463641|gb|ADZ15591.1| cryptochrome 2 (photolyase-like) [synthetic construct]
Length = 593
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 95/144 (65%), Gaps = 6/144 (4%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRW 61
G +VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRW
Sbjct: 18 GTDSASSVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRW 71
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
RFL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD
Sbjct: 72 RFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAA 131
Query: 122 VEDMAKEYKVKVEQHVSHTLYNTN 145
+ MAKE V+V SHTLY+ +
Sbjct: 132 IMKMAKEAGVEVVTENSHTLYDLD 155
>gi|40254688|ref|NP_571861.2| cryptochrome-2 [Danio rerio]
gi|28278010|gb|AAH46088.1| Cryptochrome 3 [Danio rerio]
Length = 598
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/138 (52%), Positives = 93/138 (67%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPAL A+N + ++ +YILDP F VG NRWRFL +S
Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADT------VRCVYILDPWFAGSANVGVNRWRFLLES 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P +VFP +FK WN+ LT+EYD EPY K+RD + MA+
Sbjct: 59 LEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQ 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
EY V+ +HTLYN +
Sbjct: 119 EYGVETVVRNTHTLYNPD 136
>gi|188536100|ref|NP_066940.2| cryptochrome-2 isoform 1 [Homo sapiens]
gi|194380960|dbj|BAG64048.1| unnamed protein product [Homo sapiens]
Length = 614
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 95/144 (65%), Gaps = 6/144 (4%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRW 61
G +VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRW
Sbjct: 39 GTDSASSVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRW 92
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
RFL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD
Sbjct: 93 RFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAA 152
Query: 122 VEDMAKEYKVKVEQHVSHTLYNTN 145
+ MAKE V+V SHTLY+ +
Sbjct: 153 IMKMAKEAGVEVVTENSHTLYDLD 176
>gi|158255956|dbj|BAF83949.1| unnamed protein product [Homo sapiens]
Length = 593
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 95/144 (65%), Gaps = 6/144 (4%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRW 61
G +VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRW
Sbjct: 18 GTDSASSVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRW 71
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
RFL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD
Sbjct: 72 RFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAA 131
Query: 122 VEDMAKEYKVKVEQHVSHTLYNTN 145
+ MAKE V+V SHTLY+ +
Sbjct: 132 IMKMAKEAGVEVVTENSHTLYDLD 155
>gi|410973791|ref|XP_003993331.1| PREDICTED: cryptochrome-2, partial [Felis catus]
Length = 582
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 94/138 (68%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRWRFL QS
Sbjct: 13 SVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRWRFLLQS 66
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD + MAK
Sbjct: 67 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 126
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V SHTLY+ +
Sbjct: 127 EAGVEVVTENSHTLYDLD 144
>gi|109106624|ref|XP_001113162.1| PREDICTED: cryptochrome-2-like [Macaca mulatta]
gi|402893708|ref|XP_003910033.1| PREDICTED: cryptochrome-2 [Papio anubis]
gi|355566579|gb|EHH22958.1| Cryptochrome-2 [Macaca mulatta]
gi|355752191|gb|EHH56311.1| Cryptochrome-2 [Macaca fascicularis]
Length = 593
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 93/136 (68%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRWRFL QS
Sbjct: 24 SVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRWRFLLQS 77
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD + MAK
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V SHTLY+
Sbjct: 138 EAGVEVVTENSHTLYD 153
>gi|183986194|gb|AAI66277.1| LOC100144974 protein [Xenopus (Silurana) tropicalis]
Length = 531
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/135 (52%), Positives = 97/135 (71%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++HW RKG+RLHDNPALL+A+ E L P++ILDP F + M+V NRWRFL ++
Sbjct: 5 SIHWFRKGLRLHDNPALLAAMKDCAE------LYPIFILDPWFPRNMKVSVNRWRFLIEA 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD+ + + SRL+VV+GKP EVFP +FK W + LT+E D EPY+++RD VE +A
Sbjct: 59 LKDLDENLKKINSRLFVVRGKPTEVFPLLFKKWKVTRLTFEVDTEPYSRQRDADVEKLAA 118
Query: 128 EYKVKVEQHVSHTLY 142
E+ V+V Q VS+TLY
Sbjct: 119 EHNVQVIQKVSNTLY 133
>gi|301622212|ref|XP_002940429.1| PREDICTED: cryptochrome-1-like [Xenopus (Silurana) tropicalis]
Length = 531
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/135 (52%), Positives = 97/135 (71%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++HW RKG+RLHDNPALL+A+ E L P++ILDP F + M+V NRWRFL ++
Sbjct: 5 SIHWFRKGLRLHDNPALLAAMKDCAE------LYPIFILDPWFPRNMKVSVNRWRFLIEA 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD+ + + SRL+VV+GKP EVFP +FK W + LT+E D EPY+++RD VE +A
Sbjct: 59 LKDLDENLKKINSRLFVVRGKPTEVFPLLFKKWKVTRLTFEVDTEPYSRQRDADVEKLAA 118
Query: 128 EYKVKVEQHVSHTLY 142
E+ V+V Q VS+TLY
Sbjct: 119 EHNVQVIQKVSNTLY 133
>gi|73983386|ref|XP_540761.2| PREDICTED: cryptochrome-2 [Canis lupus familiaris]
Length = 593
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 94/138 (68%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRWRFL QS
Sbjct: 24 SVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRWRFLLQS 77
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD + MAK
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V SHTLY+ +
Sbjct: 138 EAGVEVVTENSHTLYDLD 155
>gi|296217987|ref|XP_002755255.1| PREDICTED: cryptochrome-2 isoform 1 [Callithrix jacchus]
Length = 593
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 94/138 (68%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRWRFL QS
Sbjct: 24 SVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRWRFLLQS 77
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD + MAK
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V SHTLY+ +
Sbjct: 138 EAGVEVVTENSHTLYDLD 155
>gi|380797951|gb|AFE70851.1| cryptochrome-2 isoform 1, partial [Macaca mulatta]
Length = 579
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 93/136 (68%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRWRFL QS
Sbjct: 10 SVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRWRFLLQS 63
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD + MAK
Sbjct: 64 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 123
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V SHTLY+
Sbjct: 124 EAGVEVVTENSHTLYD 139
>gi|403254649|ref|XP_003920073.1| PREDICTED: cryptochrome-2 [Saimiri boliviensis boliviensis]
Length = 593
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 94/138 (68%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRWRFL QS
Sbjct: 24 SVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRWRFLLQS 77
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD + MAK
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V SHTLY+ +
Sbjct: 138 EAGVEVVTENSHTLYDLD 155
>gi|432863953|ref|XP_004070204.1| PREDICTED: cryptochrome-2-like [Oryzias latipes]
Length = 667
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/136 (52%), Positives = 93/136 (68%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPAL A+N + ++ +YILDP F VG NRWRFL ++
Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGAD------TVRCVYILDPWFAGAANVGINRWRFLLEA 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD + L SRL+VV+G+P +VFP +FK WN+ LT+EYD EPY K+RDG + MA+
Sbjct: 59 LEDLDCSLKKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEYDPEPYGKERDGAIIKMAQ 118
Query: 128 EYKVKVEQHVSHTLYN 143
E+ V+ SHTLYN
Sbjct: 119 EFGVETVVRNSHTLYN 134
>gi|344280774|ref|XP_003412157.1| PREDICTED: cryptochrome-2 [Loxodonta africana]
Length = 593
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 94/138 (68%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRWRFL QS
Sbjct: 24 SVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRWRFLLQS 77
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD + MAK
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V SHTLY+ +
Sbjct: 138 EAGVEVVTENSHTLYDLD 155
>gi|426368087|ref|XP_004051044.1| PREDICTED: cryptochrome-2 isoform 1 [Gorilla gorilla gorilla]
Length = 614
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 94/138 (68%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRWRFL QS
Sbjct: 45 SVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRWRFLLQS 98
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD + MAK
Sbjct: 99 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 158
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V SHTLY+ +
Sbjct: 159 EAGVEVVTENSHTLYDLD 176
>gi|332836250|ref|XP_001160595.2| PREDICTED: cryptochrome-2 isoform 1 [Pan troglodytes]
gi|397473567|ref|XP_003808279.1| PREDICTED: cryptochrome-2 isoform 1 [Pan paniscus]
Length = 614
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 94/138 (68%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRWRFL QS
Sbjct: 45 SVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRWRFLLQS 98
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD + MAK
Sbjct: 99 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 158
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V SHTLY+ +
Sbjct: 159 EAGVEVVTENSHTLYDLD 176
>gi|431915736|gb|ELK16069.1| Cryptochrome-2 [Pteropus alecto]
Length = 593
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 94/138 (68%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRWRFL QS
Sbjct: 24 SVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRWRFLLQS 77
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD + MAK
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V SHTLY+ +
Sbjct: 138 EAGVEVVTENSHTLYDLD 155
>gi|281348773|gb|EFB24357.1| hypothetical protein PANDA_011308 [Ailuropoda melanoleuca]
Length = 580
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 94/138 (68%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRWRFL QS
Sbjct: 12 SVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRWRFLLQS 65
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD + MAK
Sbjct: 66 LEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 125
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V SHTLY+ +
Sbjct: 126 EAGVEVVTENSHTLYDLD 143
>gi|297688842|ref|XP_002821877.1| PREDICTED: cryptochrome-2 [Pongo abelii]
Length = 614
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 94/138 (68%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRWRFL QS
Sbjct: 45 SVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRWRFLLQS 98
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD + MAK
Sbjct: 99 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 158
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V SHTLY+ +
Sbjct: 159 EAGVEVVTENSHTLYDLD 176
>gi|301773864|ref|XP_002922356.1| PREDICTED: cryptochrome-2-like, partial [Ailuropoda melanoleuca]
Length = 581
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 94/138 (68%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRWRFL QS
Sbjct: 12 SVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRWRFLLQS 65
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD + MAK
Sbjct: 66 LEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 125
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V SHTLY+ +
Sbjct: 126 EAGVEVVTENSHTLYDLD 143
>gi|147903319|ref|NP_001082139.1| cryptochrome 2a [Xenopus laevis]
gi|46249526|gb|AAH68732.1| LOC398246 protein [Xenopus laevis]
Length = 568
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 96/146 (65%), Gaps = 7/146 (4%)
Query: 1 MGGTPE-CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPN 59
M G P +VHW RKG+RLHDNPALLSA+ N ++ +YILDP F G N
Sbjct: 1 MEGKPSVSSVHWFRKGLRLHDNPALLSALRGANS------VRCVYILDPWFAASSSGGVN 54
Query: 60 RWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
RWRFL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD
Sbjct: 55 RWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVSRLTFEYDSEPFGKERD 114
Query: 120 GLVEDMAKEYKVKVEQHVSHTLYNTN 145
++ +AKE V+V SHTLY+ +
Sbjct: 115 AVIMKLAKEGGVEVVVENSHTLYDLD 140
>gi|2073148|dbj|BAA19864.1| photolyase/blue-light receptor homolog2 [Mus musculus]
Length = 569
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/137 (53%), Positives = 93/137 (67%), Gaps = 6/137 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRWRFL QSL
Sbjct: 1 VHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRWRFLLQSL 54
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD + MAKE
Sbjct: 55 EDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 114
Query: 129 YKVKVEQHVSHTLYNTN 145
V+V SHTLY+ +
Sbjct: 115 AGVEVVTENSHTLYDLD 131
>gi|8698592|dbj|BAA96850.1| cryptochrome3 [Danio rerio]
Length = 598
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/138 (52%), Positives = 92/138 (66%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPAL A+N + ++ +YILDP F VG NRWRFL +S
Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADT------VRCVYILDPWFAGSANVGVNRWRFLLES 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL VV+G+P +VFP +FK WN+ LT+EYD EPY K+RD + MA+
Sbjct: 59 LEDLDTSLRKLNSRLSVVRGQPTDVFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQ 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
EY V+ SHTLYN +
Sbjct: 119 EYGVETVVRNSHTLYNPD 136
>gi|15341194|gb|AAK94667.1| cryptochrome 2b [Xenopus laevis]
Length = 570
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 96/146 (65%), Gaps = 7/146 (4%)
Query: 1 MGGTPE-CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPN 59
M G P +VHW RKG+RLHDNPALL+A+ N ++ +YILDP F G N
Sbjct: 1 MEGKPSVSSVHWFRKGLRLHDNPALLAALRGANS------VRCVYILDPWFAASSSGGVN 54
Query: 60 RWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
RWRFL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD
Sbjct: 55 RWRFLLQSLEDLDSSLRKLNSRLFVVRGQPADVFPKLFKEWGVSRLTFEYDSEPFGKERD 114
Query: 120 GLVEDMAKEYKVKVEQHVSHTLYNTN 145
++ +AKE V+V SHTLY+ +
Sbjct: 115 AVIMKLAKEAGVEVIVENSHTLYDLD 140
>gi|311247933|ref|XP_003122883.1| PREDICTED: cryptochrome-2 isoform 1 [Sus scrofa]
Length = 594
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/138 (52%), Positives = 95/138 (68%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPALL+A+ +G + + + +YILDP F VG NRWRFL QS
Sbjct: 25 SVHWFRKGLRLHDNPALLAAV-----RGAHCV-RCVYILDPWFAASSSVGINRWRFLLQS 78
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P +VFP +F+ W + LT+EYD EP+ K+RD + MAK
Sbjct: 79 LEDLDTSLRKLNSRLFVVRGQPADVFPALFQEWGVTRLTFEYDSEPFGKERDAAIMKMAK 138
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V SHTLY+ +
Sbjct: 139 EAGVEVVTENSHTLYDLD 156
>gi|44843616|emb|CAE54427.1| sCRY2L protein [Spalax judaei]
Length = 606
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 97/144 (67%), Gaps = 9/144 (6%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRW 61
GG+ +VHW RKG+RLHDNP+LL+A+ +G + + +YILDP F VG NRW
Sbjct: 34 GGS---SVHWFRKGLRLHDNPSLLAAV-----RGARCV-RCVYILDPWFAASSSVGINRW 84
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
RFL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD
Sbjct: 85 RFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAA 144
Query: 122 VEDMAKEYKVKVEQHVSHTLYNTN 145
+ MAKE V+V SHTLY+ +
Sbjct: 145 IMKMAKEAGVEVVTENSHTLYDLD 168
>gi|44843614|emb|CAE54426.1| sCRY2S protein [Spalax judaei]
Length = 591
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 97/144 (67%), Gaps = 9/144 (6%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRW 61
GG+ +VHW RKG+RLHDNP+LL+A+ +G + + +YILDP F VG NRW
Sbjct: 19 GGS---SVHWFRKGLRLHDNPSLLAAV-----RGARCV-RCVYILDPWFAASSSVGINRW 69
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
RFL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD
Sbjct: 70 RFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAA 129
Query: 122 VEDMAKEYKVKVEQHVSHTLYNTN 145
+ MAKE V+V SHTLY+ +
Sbjct: 130 IMKMAKEAGVEVVTENSHTLYDLD 153
>gi|28279917|gb|AAH44204.1| Cry5 protein, partial [Danio rerio]
Length = 545
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 92/138 (66%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+HW RKG+RLHDNPAL++A+ + PL++LDP F K R+G NRWRFL ++
Sbjct: 31 TIHWFRKGLRLHDNPALIAALKDCRH------IYPLFLLDPWFPKNTRIGINRWRFLIEA 84
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD + L SRL+VV+G P EV P +FK W I LT+E D EPY++ RD V +AK
Sbjct: 85 LKDLDSSLKKLNSRLFVVRGSPTEVLPKLFKQWKITRLTFEVDTEPYSQSRDKEVMKLAK 144
Query: 128 EYKVKVEQHVSHTLYNTN 145
EY V+V +SHTLYN +
Sbjct: 145 EYGVEVTPKISHTLYNID 162
>gi|327282060|ref|XP_003225762.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis]
Length = 530
Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 72/137 (52%), Positives = 96/137 (70%), Gaps = 7/137 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++HW RKG+RLHDNPALL+A+ E + P++ILDP F K M+V NRWRFL +S
Sbjct: 5 SIHWFRKGLRLHDNPALLAAMKNSAE------IYPIFILDPWFPKNMQVSINRWRFLIES 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD+ + L SRL+VV+G+P EVFP++F W + L +E D EPYA +RD V +A
Sbjct: 59 LKDLDESLKKLNSRLFVVRGRPAEVFPELFTKWKVTRLAFEVDTEPYA-RRDAEVVRLAA 117
Query: 128 EYKVKVEQHVSHTLYNT 144
E+ V+V Q VSHTLY+T
Sbjct: 118 EHGVQVIQKVSHTLYDT 134
>gi|18858473|ref|NP_571863.1| cryptochrome 5 [Danio rerio]
gi|8698596|dbj|BAA96852.1| 6-4 photolyase [Danio rerio]
Length = 519
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 92/138 (66%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+HW RKG+RLHDNPAL++A+ + PL++LDP F K R+G NRWRFL ++
Sbjct: 5 TIHWFRKGLRLHDNPALIAALKDCRH------IYPLFLLDPWFPKNTRIGINRWRFLIEA 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD + L SRL+VV+G P EV P +FK W I LT+E D EPY++ RD V +AK
Sbjct: 59 LKDLDSSLKKLNSRLFVVRGSPTEVLPKLFKQWKITRLTFEVDTEPYSQSRDKEVMKLAK 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
EY V+V +SHTLYN +
Sbjct: 119 EYGVEVTPKISHTLYNID 136
>gi|47217864|emb|CAG02357.1| unnamed protein product [Tetraodon nigroviridis]
Length = 2050
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/137 (52%), Positives = 91/137 (66%), Gaps = 7/137 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++HW RKG+RLHDNPAL++A+ E L P++ILDPH VG NR RFL +
Sbjct: 5 SIHWFRKGLRLHDNPALMAALRDCKE------LYPVFILDPHLHN-KSVGINRCRFLIGA 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+GKPEEVFP +F W + LT+EYD EPY+ RD V +A+
Sbjct: 58 LRDLDLSLRNLNSRLFVVRGKPEEVFPKLFSQWKVTKLTYEYDTEPYSLSRDRTVTTLAE 117
Query: 128 EYKVKVEQHVSHTLYNT 144
E V+V VSHTLY+T
Sbjct: 118 ESGVQVVYRVSHTLYDT 134
>gi|348519202|ref|XP_003447120.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 570
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 91/136 (66%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+HW RKG+RLHDNP+L +I +G + L + +YILDP F VG NRWRFL Q
Sbjct: 5 TIHWFRKGLRLHDNPSLKDSI-----RGSDTL-RCIYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK W I L++EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWQINRLSYEYDSEPFGKERDAAIQKLAN 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLYN
Sbjct: 119 EAGVEVMVRISHTLYN 134
>gi|348500170|ref|XP_003437646.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 522
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 92/138 (66%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+HW RKG+RLHDNPAL++A+ + L P++ILDP+ + VG NRWRFL +
Sbjct: 5 CIHWFRKGLRLHDNPALMAALKDCKQ------LYPVFILDPYLQNKACVGINRWRFLIGA 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+GKPE+V P +F W + L +EYD EPY+ +RD V +AK
Sbjct: 59 LKDLDGSLRKLNSRLFVVRGKPEDVLPKLFTKWKVTRLAYEYDTEPYSLQRDSKVTSLAK 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E+ V+V VSHTLYN +
Sbjct: 119 EHGVEVIYKVSHTLYNID 136
>gi|399220401|gb|AFP33464.1| cryptochrome 1 [Dicentrarchus labrax]
Length = 567
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+HW RKG+RLHDNP+L +I + L+ +YILDP F VG NRWRFL
Sbjct: 5 TIHWFRKGLRLHDNPSLRDSIRGADS------LRCVYILDPWFAGSSNVGINRWRFLLHC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRLYV++G+P +VFP +FK W I L++EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDNSLRKLNSRLYVIRGQPTDVFPRLFKEWQINRLSYEYDSEPFGKERDAAIQKLAC 118
Query: 128 EYKVKVEQHVSHTLYN 143
E +V+V VSHTLYN
Sbjct: 119 EAEVEVMVQVSHTLYN 134
>gi|118572249|sp|Q5IZC5.2|CRY1_ERIRU RecName: Full=Cryptochrome-1
gi|57233429|gb|AAW48290.1| cryptochrome-1a [Erithacus rubecula]
Length = 620
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 91/136 (66%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I +G + + + +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALRECI-----RGADTV-RCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|82091801|sp|Q6ZZY0.1|CRY1_SYLBO RecName: Full=Cryptochrome-1
gi|45535501|emb|CAG14931.1| cryptochrome 1 [Sylvia borin]
Length = 620
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADT------VRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|6681031|ref|NP_031797.1| cryptochrome-1 [Mus musculus]
gi|81882230|sp|P97784.1|CRY1_MOUSE RecName: Full=Cryptochrome-1
gi|5081813|gb|AAD39548.1|AF156986_1 cryptochrome 1 [Mus musculus]
gi|1816439|dbj|BAA19175.1| photolyase/blue-light receptor homolog [Mus musculus]
gi|18380944|gb|AAH22174.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
gi|55716088|gb|AAH85499.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
gi|74194028|dbj|BAE36931.1| unnamed protein product [Mus musculus]
gi|148689469|gb|EDL21416.1| cryptochrome 1 (photolyase-like) [Mus musculus]
Length = 606
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|110962429|gb|ABH03083.1| cryptochrome 1b [Sylvia borin]
Length = 587
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 90/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADT------VRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V +SHTLY+ +
Sbjct: 119 EAGVEVIVRISHTLYDLD 136
>gi|291389942|ref|XP_002711467.1| PREDICTED: cryptochrome 1 (photolyase-like) [Oryctolagus cuniculus]
Length = 587
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITRLSIEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|57233431|gb|AAW48291.1| cryptochrome-1b [Erithacus rubecula]
Length = 587
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 92/138 (66%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I +G + + + +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALRECI-----RGADTV-RCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V +SHTLY+ +
Sbjct: 119 EAGVEVIVRISHTLYDLD 136
>gi|348553110|ref|XP_003462370.1| PREDICTED: cryptochrome-1-like [Cavia porcellus]
Length = 675
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 90/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIRGAD------TIRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V +SHTLY+ +
Sbjct: 119 EAGVEVIVRISHTLYDLD 136
>gi|45383642|ref|NP_989575.1| cryptochrome-2 [Gallus gallus]
gi|19550965|gb|AAK61386.1| cryptochrome 2 [Gallus gallus]
Length = 582
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 91/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW R+G+RLHDNPAL +A+ L+ +YILDP F VG NRWRFL QS
Sbjct: 14 SVHWFRRGLRLHDNPALQAALRGAAS------LRCIYILDPWFAASSAVGINRWRFLLQS 67
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD + +AK
Sbjct: 68 LEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAK 127
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V SHTLY+ +
Sbjct: 128 EAGVEVVIENSHTLYDLD 145
>gi|440907719|gb|ELR57829.1| Cryptochrome-1 [Bos grunniens mutus]
Length = 589
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|426374041|ref|XP_004053891.1| PREDICTED: cryptochrome-1 [Gorilla gorilla gorilla]
Length = 583
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 90/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V +SHTLY+ +
Sbjct: 119 EAGVEVIVRISHTLYDLD 136
>gi|417403044|gb|JAA48347.1| Putative deoxyribodipyrimidine photolyase/cryptochrome [Desmodus
rotundus]
Length = 587
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|432094365|gb|ELK25942.1| Cryptochrome-1 [Myotis davidii]
Length = 535
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 91/136 (66%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I +G + + + +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECI-----RGADTI-RCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDSNLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVQISHTLYD 134
>gi|297692835|ref|XP_002823736.1| PREDICTED: cryptochrome-1 [Pongo abelii]
Length = 586
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 90/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDASLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V +SHTLY+ +
Sbjct: 119 EAGVEVIVRISHTLYDLD 136
>gi|296212792|ref|XP_002752992.1| PREDICTED: cryptochrome-1 [Callithrix jacchus]
Length = 586
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|403275987|ref|XP_003929699.1| PREDICTED: cryptochrome-1 [Saimiri boliviensis boliviensis]
Length = 586
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|118572251|sp|Q8QG60.2|CRY2_CHICK RecName: Full=Cryptochrome-2
Length = 582
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 90/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW R+G+RLHDNPAL +A+ L+ +YILDP F VG NRWRFL QS
Sbjct: 14 SVHWFRRGLRLHDNPALQAALRGAAS------LRCIYILDPWFAASSAVGINRWRFLLQS 67
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P +VFP +FK W + L +EYD EP+ K+RD + +AK
Sbjct: 68 LEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEYDSEPFGKERDAAIIKLAK 127
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V SHTLYN +
Sbjct: 128 EAGVEVVIENSHTLYNLD 145
>gi|157427956|ref|NP_001098885.1| cryptochrome-1 [Bos taurus]
gi|157278893|gb|AAI34487.1| CRY1 protein [Bos taurus]
Length = 587
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|431905253|gb|ELK10298.1| Cryptochrome-1 [Pteropus alecto]
Length = 513
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 90/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V +SHTLY+ +
Sbjct: 119 EAGVEVIVRISHTLYDLD 136
>gi|311255201|ref|XP_003126127.1| PREDICTED: cryptochrome-1 [Sus scrofa]
Length = 588
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|395819912|ref|XP_003783322.1| PREDICTED: cryptochrome-1 [Otolemur garnettii]
Length = 587
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITRLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|193211372|ref|NP_001123207.1| cryptochrome-1 [Ovis aries]
gi|152940829|gb|ABS44879.1| cryptochrome 1 [Ovis aries]
Length = 587
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIIRISHTLYD 134
>gi|327272394|ref|XP_003220970.1| PREDICTED: cryptochrome-1-like isoform 1 [Anolis carolinensis]
Length = 621
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/135 (51%), Positives = 88/135 (65%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALREVIQGADT------VRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLY 142
E V+V +SHTLY
Sbjct: 119 EAGVEVIVRISHTLY 133
>gi|380254429|dbj|BAL72539.1| cryptochrome3 [Siganus guttatus]
Length = 507
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 92/138 (66%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPAL A+N + ++ +YILDP F VG NRWRFL ++
Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADT------VRCVYILDPWFAGSANVGINRWRFLLEA 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD + L SRL+VV+G+P +VFP + K W + LT+EYD EPY K+RDG + MA+
Sbjct: 59 LEDLDNSLKKLNSRLFVVKGQPTDVFPRLLKEWKVTRLTFEYDPEPYGKERDGAIIKMAQ 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E+ V+ SHTLYN +
Sbjct: 119 EFGVETIVRNSHTLYNLD 136
>gi|80861398|ref|NP_942045.2| cryptochrome-1 [Rattus norvegicus]
gi|118572250|sp|Q32Q86.1|CRY1_RAT RecName: Full=Cryptochrome-1
gi|78395116|gb|AAI07678.1| Cryptochrome 1 (photolyase-like) [Rattus norvegicus]
Length = 588
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|75048080|sp|Q8WP19.1|CRY1_MACFA RecName: Full=Cryptochrome-1
gi|17026058|dbj|BAB72089.1| cryptochrome 1 [Macaca fascicularis]
Length = 586
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|149067374|gb|EDM17107.1| cryptochrome 1 (photolyase-like) [Rattus norvegicus]
Length = 555
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 90/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V +SHTLY+ +
Sbjct: 119 EAGVEVIVRISHTLYDLD 136
>gi|410965445|ref|XP_003989258.1| PREDICTED: cryptochrome-1 [Felis catus]
Length = 587
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 90/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V +SHTLY+ +
Sbjct: 119 EAGVEVIVRISHTLYDLD 136
>gi|302564841|ref|NP_001181088.1| cryptochrome-1 [Macaca mulatta]
gi|402887532|ref|XP_003907145.1| PREDICTED: cryptochrome-1 [Papio anubis]
gi|355564646|gb|EHH21146.1| hypothetical protein EGK_04148 [Macaca mulatta]
gi|355786488|gb|EHH66671.1| hypothetical protein EGM_03711 [Macaca fascicularis]
gi|380809804|gb|AFE76777.1| cryptochrome-1 [Macaca mulatta]
gi|383415927|gb|AFH31177.1| cryptochrome-1 [Macaca mulatta]
gi|384945408|gb|AFI36309.1| cryptochrome-1 [Macaca mulatta]
Length = 586
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|73969270|ref|XP_862753.1| PREDICTED: cryptochrome-1 isoform 2 [Canis lupus familiaris]
Length = 587
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|114646730|ref|XP_509339.2| PREDICTED: cryptochrome-1 [Pan troglodytes]
gi|397525251|ref|XP_003832588.1| PREDICTED: cryptochrome-1 [Pan paniscus]
gi|410216796|gb|JAA05617.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410256668|gb|JAA16301.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410295158|gb|JAA26179.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410354849|gb|JAA44028.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
Length = 586
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 90/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V +SHTLY+ +
Sbjct: 119 EAGVEVIVRISHTLYDLD 136
>gi|4758072|ref|NP_004066.1| cryptochrome-1 [Homo sapiens]
gi|332241714|ref|XP_003270025.1| PREDICTED: cryptochrome-1 [Nomascus leucogenys]
gi|74735764|sp|Q16526.1|CRY1_HUMAN RecName: Full=Cryptochrome-1
gi|1304107|dbj|BAA12068.1| photolyase [Homo sapiens]
gi|1313902|dbj|BAA12710.1| photolyase homolog [Homo sapiens]
gi|22539647|gb|AAH30519.1| Cryptochrome 1 (photolyase-like) [Homo sapiens]
gi|119618201|gb|EAW97795.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|119618203|gb|EAW97797.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|121647009|gb|ABM64209.1| photolyase-like cryptochrome 1 [Homo sapiens]
gi|158254536|dbj|BAF83241.1| unnamed protein product [Homo sapiens]
gi|261858374|dbj|BAI45709.1| cryptochrome 1 [synthetic construct]
gi|325464291|gb|ADZ15916.1| cryptochrome 1 (photolyase-like) [synthetic construct]
Length = 586
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 90/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V +SHTLY+ +
Sbjct: 119 EAGVEVIVRISHTLYDLD 136
>gi|296487421|tpg|DAA29534.1| TPA: cryptochrome 1 (photolyase-like) [Bos taurus]
Length = 543
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 90/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V +SHTLY+ +
Sbjct: 119 EAGVEVIVRISHTLYDLD 136
>gi|444511893|gb|ELV09967.1| Cryptochrome-1 [Tupaia chinensis]
Length = 463
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 90/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V +SHTLY+ +
Sbjct: 119 EAGVEVIVRISHTLYDLD 136
>gi|149742994|ref|XP_001499263.1| PREDICTED: cryptochrome-1 [Equus caballus]
Length = 587
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 90/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V +SHTLY+ +
Sbjct: 119 EAGVEVIVRISHTLYDLD 136
>gi|432862559|ref|XP_004069915.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 562
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 91/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNPAL +I +G + L + +YILDP F VG NRWRFL
Sbjct: 5 TVHWFRKGLRLHDNPALRDSI-----RGSDTL-RCIYILDPWFAGSSNVGINRWRFLLHC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK W I L++EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWQITRLSYEYDSEPFGKERDAAIQKLAS 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V +SHTLY+ +
Sbjct: 119 EAAVEVVVRISHTLYDLD 136
>gi|301784579|ref|XP_002927704.1| PREDICTED: cryptochrome-1-like [Ailuropoda melanoleuca]
gi|281347021|gb|EFB22605.1| hypothetical protein PANDA_017512 [Ailuropoda melanoleuca]
Length = 587
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 90/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V +SHTLY+ +
Sbjct: 119 EAGVEVIVRISHTLYDLD 136
>gi|327272396|ref|XP_003220971.1| PREDICTED: cryptochrome-1-like isoform 2 [Anolis carolinensis]
Length = 589
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/135 (51%), Positives = 88/135 (65%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALREVIQGADT------VRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLY 142
E V+V +SHTLY
Sbjct: 119 EAGVEVIVRISHTLY 133
>gi|291290513|dbj|BAI82612.1| cryptochrome 2 [Xenopus (Silurana) tropicalis]
Length = 557
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 91/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPAL +A+ ++ +YILDP F G NRWRFL QS
Sbjct: 3 SVHWFRKGLRLHDNPALSAALRDATS------VRCVYILDPWFAASSSGGVNRWRFLLQS 56
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD ++ +AK
Sbjct: 57 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAK 116
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V SHTLY+ +
Sbjct: 117 EAGVEVIVENSHTLYDLD 134
>gi|223647560|gb|ACN10538.1| Cryptochrome-1 [Salmo salar]
Length = 643
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 90/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++HW RKG+RLHDNPALL A+ + ++ +Y LDP F +G NRWRFL Q
Sbjct: 5 SIHWFRKGLRLHDNPALLEAVRDSDT------VRCVYFLDPWFAGSSNLGVNRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +FP +FK WNI LT+E D EP+ K+RD ++ +A
Sbjct: 59 LEDLDSSLRKLNSRLFVIRGQPANIFPRLFKDWNISQLTFECDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V +SHTLY+ +
Sbjct: 119 EAGVEVVSRISHTLYDLD 136
>gi|45383636|ref|NP_989576.1| cryptochrome-1 [Gallus gallus]
gi|82104700|sp|Q8QG61.1|CRY1_CHICK RecName: Full=Cryptochrome-1
gi|19550963|gb|AAK61385.1| cryptochrome 1 [Gallus gallus]
Length = 621
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 91/136 (66%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I +G + + + +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALRECI-----RGADTV-RCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK W+I L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWSIAKLSIEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|15824991|gb|AAL09563.1|AF363632_1 cryptochrome 1 [Coturnix japonica]
Length = 168
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 92/138 (66%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I +G + + + +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALRECI-----RGADTV-RCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK W+I L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWSIAKLSIEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V +SHTLY+ +
Sbjct: 119 EAGVEVIGRISHTLYDLD 136
>gi|33333729|gb|AAQ11980.1| cryptochrome 1 [Rattus norvegicus]
Length = 588
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRWVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|410926431|ref|XP_003976682.1| PREDICTED: cryptochrome-2-like [Takifugu rubripes]
Length = 718
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 90/136 (66%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPAL A+N + L+ +YILDP F VG NRWRFL ++
Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADS------LRCIYILDPWFAGAANVGINRWRFLLEA 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL VV+G+P +VFP + K W + LT+E+D EPY K+RDG + +A+
Sbjct: 59 LEDLDCSLRKLSSRLLVVRGQPTDVFPRLLKDWKVTRLTFEFDPEPYGKERDGAIIKLAQ 118
Query: 128 EYKVKVEQHVSHTLYN 143
++ V+ SHTLYN
Sbjct: 119 QFGVETIVRNSHTLYN 134
>gi|76880306|dbj|BAE45919.1| cryptochrome [Hyla japonica]
Length = 377
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+HW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AIHWFRKGLRLHDNPALKECIQGSDT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK W I L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKISRLSIEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V +SHTLY+ +
Sbjct: 119 EAAVEVIVRISHTLYDLD 136
>gi|81864807|sp|Q70AD6.1|CRY1_SPAJD RecName: Full=Cryptochrome-1
gi|44843612|emb|CAE54425.1| sCRY1 protein [Spalax judaei]
Length = 587
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 88/136 (64%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLLVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|344266586|ref|XP_003405361.1| PREDICTED: cryptochrome-1-like [Loxodonta africana]
Length = 583
Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK W+I L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWDITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|66910245|gb|AAH96780.1| Cry2b protein [Danio rerio]
gi|197247271|gb|AAI64795.1| Cry2b protein [Danio rerio]
Length = 639
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 91/136 (66%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPALL A+N + L+ +Y LDP F +G NRWRFL QS
Sbjct: 5 SVHWFRKGLRLHDNPALLEALNGAD------TLRCVYFLDPWFAGASNLGVNRWRFLLQS 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L S L+V++G+P ++FP +FK W + LT+E+D EP+ K+RD ++ +A
Sbjct: 59 LEDLDASLRKLNSCLFVIRGQPADIFPRLFKEWKVSRLTFEFDSEPFGKERDAAIKKLAC 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVKISHTLYD 134
>gi|18858467|ref|NP_571867.1| cryptochrome 2b [Danio rerio]
gi|8698590|dbj|BAA96849.1| cryptochrome 2b [Danio rerio]
Length = 638
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 91/136 (66%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPALL A+N + L+ +Y LDP F +G NRWRFL QS
Sbjct: 5 SVHWFRKGLRLHDNPALLEALNGAD------TLRCVYFLDPWFAGASNLGVNRWRFLLQS 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L S L+V++G+P ++FP +FK W + LT+E+D EP+ K+RD ++ +A
Sbjct: 59 LEDLDASLRKLNSCLFVIRGQPADIFPRLFKEWKVSRLTFEFDSEPFGKERDAAIKKLAC 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVKISHTLYD 134
>gi|404312667|ref|NP_001017311.2| cryptochrome 1 (photolyase-like) [Xenopus (Silurana) tropicalis]
gi|170287804|gb|AAI61038.1| Unknown (protein for MGC:184712) [Xenopus (Silurana) tropicalis]
Length = 618
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 88/136 (64%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK W I L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|15341190|gb|AAK94665.1| cryptochrome 1 [Xenopus laevis]
Length = 616
Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 88/136 (64%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADT------VRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK W I L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|387015300|gb|AFJ49769.1| Cryptochrome-1-like [Crotalus adamanteus]
Length = 622
Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 SVHWFRKGLRLHDNPALREVIEGADT------VRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNISKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E ++V +SHTLY+
Sbjct: 119 EAGLEVIVRISHTLYD 134
>gi|432943720|ref|XP_004083252.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 624
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 90/136 (66%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+HW RKG+RLHDNP+L ++ + ++ +YILDP F VG NRWRFL QS
Sbjct: 5 TIHWFRKGLRLHDNPSLKESLLGADT------VRCVYILDPWFAGSSNVGINRWRFLLQS 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK W I L++EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKIARLSYEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V VSHTLY+
Sbjct: 119 EAGVEVTVRVSHTLYD 134
>gi|147901097|ref|NP_001081129.1| cryptochrome 1 (photolyase-like) [Xenopus laevis]
gi|47938667|gb|AAH72120.1| Cry1-A protein [Xenopus laevis]
Length = 616
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 88/136 (64%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADT------VRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK W I L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|380254427|dbj|BAL72538.1| cryptochrome1 [Siganus guttatus]
Length = 581
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+HW RKG+RLHDNPAL +I +G + L + +YILDP F VG NRWRFL
Sbjct: 5 TIHWFRKGLRLHDNPALRDSI-----RGADTL-RCIYILDPWFAGSSSVGINRWRFLLDC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK W I L++EYD EP+ K+RD V +A
Sbjct: 59 LEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWQITRLSYEYDSEPFGKERDAAVHKLAS 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYS 134
>gi|302745152|gb|ADL62679.1| cryptochrome 1a [Phreatichthys andruzzii]
Length = 623
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 90/136 (66%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP+L +I + ++ +YILDP F VG +RWRFL Q
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSIQGAH------TVRCVYILDPWFAGSSNVGISRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L++EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWNITRLSYEYDSEPFGKERDAAIKKLAN 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|432852920|ref|XP_004067451.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 521
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 91/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+HW RKG+RLHDNPAL++A+ E L PL+ILDP+ G NR RFL S
Sbjct: 5 CIHWFRKGLRLHDNPALMAALRDCKE------LYPLFILDPYLYDQNLAGINRLRFLISS 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+GKPEEV P +F WN+ LT+EYD EPY++ RD V +A+
Sbjct: 59 LQDLDCSLRKLNSRLFVVRGKPEEVLPKLFTKWNVTKLTYEYDTEPYSRSRDKNVTMLAE 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E +++V +SHTLY+ +
Sbjct: 119 EQRIQVIYKISHTLYDID 136
>gi|63100688|gb|AAH95305.1| Cry2a protein [Danio rerio]
Length = 658
Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++HW RKG+RLHDNPAL A+ +G + + + +Y LDP F +G NRWRFL Q
Sbjct: 5 SIHWFRKGLRLHDNPALQEAV-----RGADTV-RCVYFLDPWFAGSSNLGVNRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P VFP +FK W I LT+EYD EP+ K+RD ++ +A
Sbjct: 59 LDDLDSNLRKLNSRLFVVRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAM 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V SHTLYN
Sbjct: 119 EAGVEVIVKTSHTLYN 134
>gi|18858465|ref|NP_571866.1| cryptochrome-1 [Danio rerio]
gi|8698588|dbj|BAA96848.1| cryptochrome 2a [Danio rerio]
Length = 655
Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++HW RKG+RLHDNPAL A+ +G + + + +Y LDP F +G NRWRFL Q
Sbjct: 5 SIHWFRKGLRLHDNPALQEAV-----RGADTV-RCVYFLDPWFAGSSNLGVNRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P VFP +FK W I LT+EYD EP+ K+RD ++ +A
Sbjct: 59 LDDLDSNLRKLNSRLFVVRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAM 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V SHTLYN
Sbjct: 119 EAGVEVIVKTSHTLYN 134
>gi|115528160|gb|AAI24763.1| Cryptochrome 1a [Danio rerio]
Length = 619
Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 90/136 (66%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP+L +I + ++ +YILDP F VG +RWRFL Q
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSILGAHS------VRCVYILDPWFAGSSNVGISRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L++EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLAN 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|390979651|ref|NP_001070765.2| cryptochrome 1a [Danio rerio]
gi|141796163|gb|AAI34839.1| Cry1a protein [Danio rerio]
gi|190337408|gb|AAI63354.1| Cryptochrome 1a [Danio rerio]
Length = 619
Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 90/136 (66%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP+L +I + ++ +YILDP F VG +RWRFL Q
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSILGAHS------VRCVYILDPWFAGSSNVGISRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L++EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLAN 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|8698584|dbj|BAA96846.1| cryptochrome 1a [Danio rerio]
Length = 556
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 90/136 (66%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP+L +I + ++ +YILDP F VG +RWRFL Q
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSILGAHS------VRCVYILDPWFAGSSNVGISRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L++EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLAN 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|405952216|gb|EKC20054.1| Cleavage stimulation factor 77 kDa subunit [Crassostrea gigas]
Length = 1237
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/135 (51%), Positives = 92/135 (68%), Gaps = 6/135 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+RLHDNP+L A+ KG + + +YILDP F +VG N+WRFL Q L
Sbjct: 701 VHWFRKGLRLHDNPSLREAL-----KGSSSY-RCVYILDPWFAGSSQVGINKWRFLLQCL 754
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD R L SRL+V++G+P ++FP IFK WNI L++E D EP+ K+RDG ++ +AKE
Sbjct: 755 EDLDTSLRKLNSRLFVLRGQPTDLFPKIFKEWNITTLSFEEDPEPFGKERDGAIQMLAKE 814
Query: 129 YKVKVEQHVSHTLYN 143
V+V SHTLY+
Sbjct: 815 AGVEVIVKTSHTLYD 829
>gi|432959668|ref|XP_004086356.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 653
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++HW RKG+RLHDNPAL A+ +G + + +Y LDP F VG NRWRFL Q
Sbjct: 5 SIHWFRKGLRLHDNPALREAV-----RGAGTV-RCVYFLDPWFAGSSNVGVNRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P VFP +FK W I LT+EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAM 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVKISHTLYD 134
>gi|399220399|gb|AFP33463.1| cryptochrome 2 [Dicentrarchus labrax]
Length = 668
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 88/136 (64%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++HW RKG+RLHDNPAL AI +G + + +Y LDP F VG NRWRFL Q
Sbjct: 5 SIHWFRKGLRLHDNPALQEAI-----RGAGTV-RCVYFLDPWFAGSSSVGVNRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P VFP +FK W I LT+EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAM 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V SHTLY+
Sbjct: 119 EAGVEVIVKTSHTLYD 134
>gi|94733627|emb|CAK05311.1| cryptochrome 1b [Danio rerio]
Length = 606
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 87/136 (63%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP+L +I + L+ +YILDP F VG +RWRFL Q
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSIKGADN------LRCVYILDPWFAGSSNVGISRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK W I L++EYD EP+ K RD + +A
Sbjct: 59 LEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVFVRISHTLYD 134
>gi|61816948|gb|AAX56342.1| 6-4 photolyase [Dunaliella salina]
Length = 600
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 98/141 (69%), Gaps = 8/141 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF--RKFMRVGPNRWRFLQ 65
++ W RKG+RLHDNPAL A + + P++I+DP+F + +VG NR++FL
Sbjct: 51 SILWFRKGLRLHDNPALRDACT------GSAAVFPIFIIDPYFLQKSNNKVGVNRYQFLL 104
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+SL+DL+ +LGS+L V++G PEEV P + + W+IK L +E D EPYAK RD V+DM
Sbjct: 105 ESLSDLNSSLTSLGSQLLVLRGTPEEVIPRVLRDWSIKKLCYEIDTEPYAKARDARVDDM 164
Query: 126 AKEYKVKVEQHVSHTLYNTNL 146
A+E V+V++H SHTLY+T++
Sbjct: 165 AREAGVEVKKHWSHTLYDTDM 185
>gi|8698586|dbj|BAA96847.1| cryptochrome 1b [Danio rerio]
Length = 606
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 87/136 (63%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP+L +I + L+ +YILDP F VG +RWRFL Q
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSIKGADN------LRCVYILDPWFAGSSNVGISRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK W I L++EYD EP+ K RD + +A
Sbjct: 59 LEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVFVRISHTLYD 134
>gi|348529122|ref|XP_003452063.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 630
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 88/135 (65%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+HW RKG+RLHDNP+L ++ + ++ +YILDP F VG NRWRFL QS
Sbjct: 5 TIHWFRKGLRLHDNPSLKESLLGAD------TVRCVYILDPWFAGSSNVGINRWRFLLQS 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK W I L++EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDSSLRKLNSRLFVIRGQPTDVFPRLFKEWKITRLSYEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLY 142
E V+V SHTLY
Sbjct: 119 EAGVEVTVRTSHTLY 133
>gi|348517126|ref|XP_003446086.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 800
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 87/136 (63%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++HW RKG+RLHDNPAL A+ ++ +Y LDP F VG NRWRFL Q
Sbjct: 5 SIHWFRKGLRLHDNPALREAVQGA------ATVRCVYFLDPWFAGSSNVGVNRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P VFP +FK W I LT+EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAM 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVKISHTLYD 134
>gi|148540005|ref|NP_571865.4| cryptochrome 1b [Danio rerio]
gi|27882364|gb|AAH44558.1| Cry1b protein [Danio rerio]
Length = 606
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 87/136 (63%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP+L +I + L+ +YILDP F VG +RWRFL Q
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSIKGADN------LRCVYILDPWFAGSSNVGISRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK W I L++EYD EP+ K RD + +A
Sbjct: 59 LEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVFVRISHTLYD 134
>gi|159479960|ref|XP_001698054.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
gi|158273853|gb|EDO99639.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
Length = 595
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 96/141 (68%), Gaps = 8/141 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF--RKFMRVGPNRWRFLQ 65
++ W RKG+RLHDNPALL A K+ K + P+++LDPHF + +V NR+ FL
Sbjct: 7 SIIWFRKGLRLHDNPALLEAC--KDAKH----VYPVFVLDPHFLQQSSYKVSVNRYNFLL 60
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+SL DL + F+A GSRL V++GKPEEVFP +F+ W + L +E+D EPYAK RD V +
Sbjct: 61 ESLEDLQRSFQARGSRLLVLRGKPEEVFPRVFREWGVTQLCFEHDTEPYAKVRDAAVRRL 120
Query: 126 AKEYKVKVEQHVSHTLYNTNL 146
A E V+V +SHTLY+T++
Sbjct: 121 AAEAGVEVVTPISHTLYDTDM 141
>gi|223647614|gb|ACN10565.1| Cryptochrome-1 [Salmo salar]
Length = 523
Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/138 (46%), Positives = 94/138 (68%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+HW RKG+RLHDNPAL++A+ E + P+++LDP+ + +G NRW+FL +
Sbjct: 5 CIHWFRKGLRLHDNPALVAALRDCKE------IYPVFVLDPYSPNNVNIGINRWKFLIGA 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+GK +EVFP +F+ W + LT+EYD EP++ +RD V +A+
Sbjct: 59 LKDLDCSLRKLNSRLFVVRGKTDEVFPKLFQKWKVTRLTYEYDTEPFSLRRDKEVGRLAE 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E+ V++ VSHTLYN +
Sbjct: 119 EHGVEIIYKVSHTLYNID 136
>gi|440895552|gb|ELR47705.1| Cryptochrome-2, partial [Bos grunniens mutus]
Length = 564
Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 68/132 (51%), Positives = 91/132 (68%), Gaps = 6/132 (4%)
Query: 14 KGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQ 73
KG+RLHDNPALL+A+ +G + + + +YILDP F VG NRWRFL QSL DLD+
Sbjct: 1 KGLRLHDNPALLAAV-----RGAHCV-RCVYILDPWFAASSSVGINRWRFLLQSLEDLDR 54
Query: 74 KFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKV 133
R L SRL+VV+G+P +VFP +F+ W + LT+EYD EP+ K+RD + MAKE V+V
Sbjct: 55 SLRKLNSRLFVVRGQPADVFPRLFQEWGVTRLTFEYDSEPFGKERDTAIMKMAKEAGVEV 114
Query: 134 EQHVSHTLYNTN 145
SHTLY+ +
Sbjct: 115 VTENSHTLYDLD 126
>gi|87280964|gb|ABD36589.1| cryptochrome 1 [Podarcis siculus]
Length = 618
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 87/136 (63%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW+R+G+RL DN AL I + + +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWVRQGLRLPDNRALREVIQGADTA------RCVYILDPSFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|390355184|ref|XP_785873.3| PREDICTED: cryptochrome-1-like [Strongylocentrotus purpuratus]
Length = 754
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 87/139 (62%), Gaps = 6/139 (4%)
Query: 5 PECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFL 64
P C VHW RKG+RLHDNPAL + K+ G + +YILDP F G NRWRFL
Sbjct: 17 PGCLVHWFRKGLRLHDNPALKEGL--KSASG----FRCIYILDPWFAGSCSKGVNRWRFL 70
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
+ L DLD R L SRL++++G+P +V P +FK W + L++E D EP+ + RD +
Sbjct: 71 LECLEDLDSSLRKLNSRLFLIRGQPADVLPRLFKEWKVTQLSFEEDSEPFGRTRDKAIST 130
Query: 125 MAKEYKVKVEQHVSHTLYN 143
+A+E VKV VSHTLY+
Sbjct: 131 LAQEAGVKVISKVSHTLYD 149
>gi|302828718|ref|XP_002945926.1| DNA photolyase [Volvox carteri f. nagariensis]
gi|300268741|gb|EFJ52921.1| DNA photolyase [Volvox carteri f. nagariensis]
Length = 621
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/144 (49%), Positives = 92/144 (63%), Gaps = 9/144 (6%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF--RKFMRVGP 58
M G P+ ++ W RKG+RLHDNPALL A + P++ILDP F + +VG
Sbjct: 1 MAG-PKNSILWFRKGLRLHDNPALLEACRGAAH------VYPVFILDPFFLQQSSYKVGV 53
Query: 59 NRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR 118
NR+ FL +SL DLD FR+ GSRL V++GKPEEVFP +F+ W I L +E D EPYA+ R
Sbjct: 54 NRYNFLLESLRDLDASFRSRGSRLLVLRGKPEEVFPRVFREWRITQLCFEVDTEPYARVR 113
Query: 119 DGLVEDMAKEYKVKVEQHVSHTLY 142
D ++ +A E V V VSHTLY
Sbjct: 114 DARIQGLADEAGVAVWTAVSHTLY 137
>gi|291290511|dbj|BAI82611.1| cryptochrome 1 [Xenopus (Silurana) tropicalis]
Length = 605
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 6/133 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q L D
Sbjct: 1 WFRKGLRLHDNPALRECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQCLED 54
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
LD R L SRL+V++G+P +VFP +FK W I L+ EYD EP+ K+RD ++ +A E
Sbjct: 55 LDANLRKLNSRLFVIRGQPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKKLASEAG 114
Query: 131 VKVEQHVSHTLYN 143
V+V +SHTLY+
Sbjct: 115 VEVIVRISHTLYD 127
>gi|156393374|ref|XP_001636303.1| predicted protein [Nematostella vectensis]
gi|156223405|gb|EDO44240.1| predicted protein [Nematostella vectensis]
Length = 533
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 87/136 (63%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW R G+RLHDNPAL A E Q + +PLY+LDP K +G RWRF+ +S
Sbjct: 9 TVHWFRNGLRLHDNPALKEAF----ETSQTV--RPLYVLDPDVLKNGNIGVVRWRFILES 62
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LADLD + L SRL+VV+G+P EVFP +FK W I LT+E D A+K+D V +A
Sbjct: 63 LADLDNNLKKLNSRLFVVRGRPSEVFPKLFKEWKISKLTFEVDTTEPARKQDAEVLKIAN 122
Query: 128 EYKVKVEQHVSHTLYN 143
+ V +EQ VSHTLY+
Sbjct: 123 KLGVDIEQRVSHTLYD 138
>gi|302745164|gb|ADL62685.1| cryptochrome 5, partial [Phreatichthys andruzzii]
Length = 411
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 89/138 (64%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++HW RKG+RLHDNPALL+A+ + PL++LDP + +G NRWRFL ++
Sbjct: 5 SIHWFRKGLRLHDNPALLAALKDCRH------IYPLFLLDPWYPNNTHIGINRWRFLIEA 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD + L SRL+VV G P EV P +F+ W I LT+E D EPY++ RD V +A+
Sbjct: 59 LKDLDSSLKKLNSRLFVVSGPPAEVLPKLFEKWKITRLTFEVDTEPYSQSRDKEVMKLAE 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V +SHTLYN +
Sbjct: 119 ENGVEVIPKISHTLYNID 136
>gi|410912170|ref|XP_003969563.1| PREDICTED: uncharacterized protein LOC101062553 [Takifugu rubripes]
Length = 1321
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 87/138 (63%), Gaps = 7/138 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+HW RKG+RLHDNP L++A+ E L P++ILDP VG NR RFL +
Sbjct: 5 CIHWFRKGLRLHDNPGLMAALRDCKE------LYPVFILDPQLHN-KSVGVNRCRFLIGA 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L +RL+VV+GKPEEVFP +F W I LT+EYD EP + RD V +A+
Sbjct: 58 LKDLDLSLRQLNTRLFVVRGKPEEVFPKLFCQWKITKLTYEYDTEPLSLSRDKTVTRLAE 117
Query: 128 EYKVKVEQHVSHTLYNTN 145
E+ + V VSHTL++ N
Sbjct: 118 EHGIDVVCKVSHTLFDIN 135
>gi|260829102|ref|XP_002609501.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae]
gi|229294858|gb|EEN65511.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae]
Length = 514
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 86/137 (62%), Gaps = 3/137 (2%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
+ +HW RKG+RLHDNP+L A+ + + +Y+LDP F VG NRWRFL
Sbjct: 2 KSTIHWFRKGLRLHDNPSLRDALQMLQPGD---VWRCVYVLDPWFAGSSNVGVNRWRFLL 58
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
Q L DLD R L SRLYV++G+P +VFP +FK W + L++E D EP+ ++RD V +
Sbjct: 59 QCLEDLDASLRKLNSRLYVIRGQPTDVFPRLFKEWKVSCLSFEEDSEPFGRERDMAVMKL 118
Query: 126 AKEYKVKVEQHVSHTLY 142
AKE VKV SHTLY
Sbjct: 119 AKEAGVKVILRTSHTLY 135
>gi|30088882|gb|AAP13561.1| cryptochrome 2 [Rana catesbeiana]
Length = 543
Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 93/147 (63%), Gaps = 8/147 (5%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGP-- 58
M G +VHW RKG+RLHDNPALL+A+ +G + + +YILDP F
Sbjct: 1 MEGPAVSSVHWFRKGLRLHDNPALLAAL-----RGARCV-RCVYILDPWFAASSSSSGGV 54
Query: 59 NRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR 118
NRWRFL QSL DLD R LGSRL+V +G+P +VFP +FK W + LT++Y EP+ K+R
Sbjct: 55 NRWRFLLQSLEDLDSSLRKLGSRLFVGRGQPADVFPRLFKEWGVTRLTFQYYSEPFGKER 114
Query: 119 DGLVEDMAKEYKVKVEQHVSHTLYNTN 145
D + +AKE V+V SHTLY+ +
Sbjct: 115 DAAIMKLAKEAGVEVIVESSHTLYDLD 141
>gi|167526345|ref|XP_001747506.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773952|gb|EDQ87586.1| predicted protein [Monosiga brevicollis MX1]
Length = 486
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++HW RKG RLHDNPAL A+ + + P++++DPHF K VG R+ FL +S
Sbjct: 7 SLHWFRKGQRLHDNPALWRALRGATQ------VYPVFVIDPHFAKPENVGVLRYNFLLES 60
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD++ R LGSRLYV++GKPEE P FK W + LT+E D EPYA+ RD + D+AK
Sbjct: 61 LKDLDEQLRGLGSRLYVLRGKPEEQLPKKFKEWKVTRLTYELDTEPYARVRDAAINDLAK 120
Query: 128 EYKVKVEQHVSHTLYN 143
++ V+V H L++
Sbjct: 121 KHNVEVIAEAGHMLHD 136
>gi|33309543|gb|AAQ03212.1|AF410956_1 cryptochrome 1-like protein [Passer domesticus]
Length = 183
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 86/133 (64%), Gaps = 6/133 (4%)
Query: 13 RKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLD 72
RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q L DLD
Sbjct: 2 RKGLRLHDNPALRECIQGADT------VRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 55
Query: 73 QKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVK 132
R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A E V+
Sbjct: 56 ANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVE 115
Query: 133 VEQHVSHTLYNTN 145
V +SHTLY+ +
Sbjct: 116 VIVRISHTLYDLD 128
>gi|406507547|gb|AFS34617.1| cryptochrome 2 [Clunio marinus]
Length = 657
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 84/134 (62%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+RLHDNPAL + KN + ++ +DP F VG N+WRFL Q L
Sbjct: 15 VHWFRKGLRLHDNPALREGL--KNA----TTFRAVFFVDPWFAGSSNVGINKWRFLLQCL 68
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLDQ R L SRL+V++G+P E P +FK WN LT+E D EP++K RD + +M KE
Sbjct: 69 EDLDQNLRRLNSRLFVIRGQPAEKLPMLFKKWNTTCLTFEEDPEPFSKVRDNNITEMCKE 128
Query: 129 YKVKVEQHVSHTLY 142
++V VSHTLY
Sbjct: 129 LNIEVISAVSHTLY 142
>gi|422295899|gb|EKU23198.1| cryptochrome [Nannochloropsis gaditana CCMP526]
Length = 560
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 91/142 (64%), Gaps = 6/142 (4%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRW 61
G ++HW RKG+RLHDNPALL A + P++ILDPHF K +G R+
Sbjct: 13 GAARTVSLHWFRKGLRLHDNPALLEACEGATH------VYPVFILDPHFAKPDVIGVLRY 66
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
RF+ Q++ +LD R +GSRL+VV+G+P E P +F+ W + LT+E D EPYAK RD
Sbjct: 67 RFMLQTIKNLDDNLREIGSRLFVVKGQPAEALPRLFREWGVSKLTFESDTEPYAKVRDRH 126
Query: 122 VEDMAKEYKVKVEQHVSHTLYN 143
V ++A +++V V+ SHTL++
Sbjct: 127 VCELAAKHQVHVQTFPSHTLHD 148
>gi|45643657|gb|AAS72904.1| cryptochrome 2 variant 1, partial [Passer domesticus]
Length = 361
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/132 (50%), Positives = 85/132 (64%), Gaps = 6/132 (4%)
Query: 14 KGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQ 73
KG+RLHDNPAL A+ L+ +YILDP F VG NRWRFL QSL DLD
Sbjct: 1 KGLRLHDNPALQEALRDATS------LRCIYILDPWFAASSAVGINRWRFLLQSLEDLDN 54
Query: 74 KFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKV 133
R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD + +AKE V+V
Sbjct: 55 SLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKEAGVEV 114
Query: 134 EQHVSHTLYNTN 145
SHTLY+ +
Sbjct: 115 VIENSHTLYDLD 126
>gi|351713396|gb|EHB16315.1| Cryptochrome-1 [Heterocephalus glaber]
Length = 591
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/133 (48%), Positives = 85/133 (63%), Gaps = 6/133 (4%)
Query: 13 RKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLD 72
RKG+RLHDNPAL + ++ +YILDP F VG NRWRFL Q L DLD
Sbjct: 71 RKGLRLHDNPALKECTRGAD------TIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 124
Query: 73 QKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVK 132
R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A E V+
Sbjct: 125 ANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVE 184
Query: 133 VEQHVSHTLYNTN 145
V +SHTLY+ +
Sbjct: 185 VIVRISHTLYDLD 197
>gi|45643659|gb|AAS72905.1| cryptochrome 2 variant 2 [Passer domesticus]
Length = 361
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 85/132 (64%), Gaps = 6/132 (4%)
Query: 14 KGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQ 73
KG+RLHDNPAL I + ++ +YILDP F VG NRWRFL QSL DLD
Sbjct: 1 KGLRLHDNPALRECIQGADT------VRCVYILDPWFAASSAVGINRWRFLLQSLEDLDN 54
Query: 74 KFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKV 133
R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD + +AKE V+V
Sbjct: 55 SLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKEAGVEV 114
Query: 134 EQHVSHTLYNTN 145
SHTLY+ +
Sbjct: 115 VIENSHTLYDLD 126
>gi|332211183|ref|XP_003254698.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-2 [Nomascus
leucogenys]
Length = 543
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 83/132 (62%), Gaps = 6/132 (4%)
Query: 14 KGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQ 73
KG R+H P LL+A+ ++ +YILDP F VG NRWRFL QSL DLD
Sbjct: 53 KGCRIHKQPTLLAAVRGAR------CVRCVYILDPWFAASSSVGINRWRFLLQSLEDLDT 106
Query: 74 KFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKV 133
R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD + MAKE V+V
Sbjct: 107 SLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEV 166
Query: 134 EQHVSHTLYNTN 145
SHTLY+ +
Sbjct: 167 VTENSHTLYDLD 178
>gi|312372433|gb|EFR20390.1| hypothetical protein AND_20159 [Anopheles darlingi]
Length = 1043
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNPAL + + ++++DP F VG N+WRFL Q
Sbjct: 108 TVHWFRKGLRLHDNPALREGVRGATS------FRCVFVIDPWFAGSSNVGINKWRFLLQC 161
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD+ R L SRL+V++G+P + P +FK W+ LT+E D EP+ + RD + +M K
Sbjct: 162 LDDLDRNLRKLNSRLFVIRGQPADALPKLFKEWSTTCLTFEEDPEPFGRVRDHNISEMCK 221
Query: 128 EYKVKVEQHVSHTLYN 143
E ++V SHTLYN
Sbjct: 222 ELGIEVISAASHTLYN 237
>gi|149635020|ref|XP_001507425.1| PREDICTED: cryptochrome-2 [Ornithorhynchus anatinus]
Length = 582
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 83/129 (64%), Gaps = 6/129 (4%)
Query: 17 RLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFR 76
RLHDNPAL +A+ ++ +YILDP F VG NRWRFL QSL DLD R
Sbjct: 20 RLHDNPALQAALRGARS------VRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLR 73
Query: 77 ALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136
L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD + MAKE V+V
Sbjct: 74 KLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIVKMAKEAGVEVVTE 133
Query: 137 VSHTLYNTN 145
SHTLY+ +
Sbjct: 134 NSHTLYDLD 142
>gi|156383455|ref|XP_001632849.1| predicted protein [Nematostella vectensis]
gi|156219911|gb|EDO40786.1| predicted protein [Nematostella vectensis]
Length = 513
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 88/137 (64%), Gaps = 6/137 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++HW RK +RLHDNPALL + +KN + +Y LDP + + PNRW FL +S
Sbjct: 18 SMHWFRKDLRLHDNPALLES--FKNCQA----FYGVYFLDPASVQRSNLSPNRWWFLLES 71
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R+LGSRL VV+G+P + P + WNIK LT EYD EP AK+RD +V +AK
Sbjct: 72 LRDLDYNLRSLGSRLLVVRGQPVQEMPKLLDQWNIKRLTLEYDSEPPAKQRDAVVTHLAK 131
Query: 128 EYKVKVEQHVSHTLYNT 144
V+V Q VSHTLY+
Sbjct: 132 NLGVEVIQRVSHTLYDV 148
>gi|157131015|ref|XP_001655778.1| DNA photolyase [Aedes aegypti]
gi|108871687|gb|EAT35912.1| AAEL011967-PA [Aedes aegypti]
Length = 820
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 82/134 (61%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+RLHDNPAL + + + ++++DP F VG N+WRFL Q L
Sbjct: 47 VHWFRKGLRLHDNPALREGLK------DAVSFRCVFVIDPWFAGSSNVGINKWRFLLQCL 100
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD+ R L SRL+V++G+P + P +FK W LT+E D EP+ K RD + +M KE
Sbjct: 101 EDLDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEMCKE 160
Query: 129 YKVKVEQHVSHTLY 142
++V VSHTLY
Sbjct: 161 LGIEVISAVSHTLY 174
>gi|347971574|ref|XP_313179.4| AGAP004261-PA [Anopheles gambiae str. PEST]
gi|347971576|ref|XP_003436763.1| AGAP004261-PB [Anopheles gambiae str. PEST]
gi|347971578|ref|XP_003436764.1| AGAP004261-PC [Anopheles gambiae str. PEST]
gi|333468729|gb|EAA44753.4| AGAP004261-PA [Anopheles gambiae str. PEST]
gi|333468730|gb|EGK97037.1| AGAP004261-PB [Anopheles gambiae str. PEST]
gi|333468731|gb|EGK97038.1| AGAP004261-PC [Anopheles gambiae str. PEST]
Length = 1056
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 83/135 (61%), Gaps = 6/135 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+RLHDNPAL + +G + ++I+DP F VG N+WRFL Q L
Sbjct: 102 VHWFRKGLRLHDNPALREGL-----RGARTF-RCVFIIDPWFAGSSNVGINKWRFLLQCL 155
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD+ R L SRL+V++G+P + P +FK W LT+E D EP+ + RD + +M KE
Sbjct: 156 DDLDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGRVRDHNISEMCKE 215
Query: 129 YKVKVEQHVSHTLYN 143
++V SHTLYN
Sbjct: 216 LGIEVISAASHTLYN 230
>gi|449018268|dbj|BAM81670.1| 6-4 photolyase [Cyanidioschyzon merolae strain 10D]
Length = 519
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 90/140 (64%), Gaps = 4/140 (2%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
T AVHW RKG+RLHDNPALL A+ +N +L P++ LDP F + VG NR F
Sbjct: 6 TMASAVHWFRKGLRLHDNPALLDAV--QNPTTTYVL--PVFCLDPIFLRPETVGVNRMNF 61
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L + L DLDQ+ R L SRL+V++G P E P F+ ++ +LLT+E+D EPYAK+RD V
Sbjct: 62 LLECLQDLDQQLRKLHSRLFVLRGNPLEQLPVFFRKYHTRLLTFEFDTEPYAKQRDTQVR 121
Query: 124 DMAKEYKVKVEQHVSHTLYN 143
+ E ++V +HTLY+
Sbjct: 122 RLCAELGIEVRTRATHTLYD 141
>gi|170059953|ref|XP_001865587.1| cryptochrome-1 [Culex quinquefasciatus]
gi|167878532|gb|EDS41915.1| cryptochrome-1 [Culex quinquefasciatus]
Length = 789
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 81/135 (60%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNPAL + L+ ++++DP F VG N+WRFL Q
Sbjct: 52 TVHWFRKGLRLHDNPALREGLK------DAASLRCVFVIDPWFAGSSNVGINKWRFLLQC 105
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD+ R L SRL+V++G+P + P +FK W LT+E D EP+ K RD + +M K
Sbjct: 106 LEDLDRNLRQLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEMCK 165
Query: 128 EYKVKVEQHVSHTLY 142
E + V VSHTLY
Sbjct: 166 ELNIDVISAVSHTLY 180
>gi|170070074|ref|XP_001869456.1| cryptochrome 2 [Culex quinquefasciatus]
gi|167866000|gb|EDS29383.1| cryptochrome 2 [Culex quinquefasciatus]
Length = 828
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 81/135 (60%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNPAL + L+ ++++DP F VG N+WRFL Q
Sbjct: 50 TVHWFRKGLRLHDNPALREGLK------DAASLRCVFVIDPWFAGSSNVGINKWRFLLQC 103
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD+ R L SRL+V++G+P + P +FK W LT+E D EP+ K RD + +M K
Sbjct: 104 LEDLDRNLRQLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEMCK 163
Query: 128 EYKVKVEQHVSHTLY 142
E + V VSHTLY
Sbjct: 164 ELNIDVISAVSHTLY 178
>gi|78191297|gb|ABB29887.1| cryptochrome 2 [Anopheles gambiae]
Length = 961
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 83/135 (61%), Gaps = 6/135 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+RLHDNPAL + +G + ++I+DP F VG N+WRFL Q L
Sbjct: 7 VHWFRKGLRLHDNPALREGL-----RGARTF-RCVFIIDPWFAGSSNVGINKWRFLLQCL 60
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD+ R L SRL+V++G+P + P +FK W LT+E D EP+ + RD + +M KE
Sbjct: 61 DDLDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGRVRDHNISEMCKE 120
Query: 129 YKVKVEQHVSHTLYN 143
++V SHTLYN
Sbjct: 121 LGIEVISAASHTLYN 135
>gi|156353900|ref|XP_001623146.1| predicted protein [Nematostella vectensis]
gi|156209813|gb|EDO31046.1| predicted protein [Nematostella vectensis]
Length = 541
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 88/137 (64%), Gaps = 8/137 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAI-NYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
++HW+RKG+R+HDNPAL A+ N+ + +YILD +G N WRFL Q
Sbjct: 23 SIHWLRKGLRIHDNPALRDAVLNWGT-------FRVVYILDTKSVASSNIGLNLWRFLLQ 75
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
+L DLD R L SRL+V++G+P +VFP +F+ W I LT+E D EP+ K+RD + +A
Sbjct: 76 ALEDLDDSLRKLNSRLFVIRGQPADVFPRLFREWGITRLTFEEDSEPFGKERDSAICMLA 135
Query: 127 KEYKVKVEQHVSHTLYN 143
+E V+V H SHTLY+
Sbjct: 136 REAGVEVASHRSHTLYH 152
>gi|156361145|ref|XP_001625380.1| predicted protein [Nematostella vectensis]
gi|156212211|gb|EDO33280.1| predicted protein [Nematostella vectensis]
Length = 463
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 88/137 (64%), Gaps = 8/137 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAI-NYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
++HW+RKG+R+HDNPAL A+ N+ + +YILD +G N WRFL Q
Sbjct: 23 SIHWLRKGLRIHDNPALRDAVLNWGT-------FRVVYILDTKSVASSNIGLNLWRFLLQ 75
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
+L DLD R L SRL+V++G+P +VFP +F+ W I LT+E D EP+ K+RD + +A
Sbjct: 76 ALEDLDDSLRKLNSRLFVIRGQPADVFPRLFREWGITRLTFEEDSEPFGKERDSAICMLA 135
Query: 127 KEYKVKVEQHVSHTLYN 143
+E V+V H SHTLY+
Sbjct: 136 REAGVEVASHRSHTLYH 152
>gi|354486342|ref|XP_003505340.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-1-like [Cricetulus
griseus]
Length = 583
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 84/136 (61%), Gaps = 10/136 (7%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RK DNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRK----XDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 54
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 55 LEDLDSNLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 114
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 115 EAGVEVIVRISHTLYD 130
>gi|145881069|gb|ABP97098.1| cryptochrome CRY1 [Acropora millepora]
Length = 552
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 89/139 (64%), Gaps = 6/139 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+HW+RK +RLHDNP+LL A+ KG + + + +Y+LD +G N WRFL QS
Sbjct: 29 AIHWVRKDLRLHDNPSLLEAV-----KGSDTV-RIIYVLDTKVDHATGIGLNLWRFLLQS 82
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L D+D R L SRL+VV+G+P +VFP +F+ W LT+E D EP+ +++D + +A+
Sbjct: 83 LEDVDDSLRKLNSRLFVVRGQPADVFPRLFREWKTSFLTFEEDSEPFGREKDAAIRLLAQ 142
Query: 128 EYKVKVEQHVSHTLYNTNL 146
E V+V SHTLY+ L
Sbjct: 143 ESGVEVAVGRSHTLYDPQL 161
>gi|410994568|gb|AFV96168.1| cryptochrome 2 [Talitrus saltator]
Length = 565
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 83/135 (61%), Gaps = 8/135 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAI-NYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW R+G+RLHDNPAL AI N + + +YILDP F VG N+WRFL Q
Sbjct: 54 VHWFRRGLRLHDNPALRDAIVNCET-------FRCIYILDPWFAGSSNVGVNKWRFLLQC 106
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L D+D R L SRL+VV+G+P P +FK WN +L++E D EP+ + RD + +A+
Sbjct: 107 LEDVDNSLRNLNSRLFVVRGQPANALPQLFKEWNTTVLSFEEDPEPFGRARDASIIGIAQ 166
Query: 128 EYKVKVEQHVSHTLY 142
E ++V SHTLY
Sbjct: 167 EMGIEVIVRTSHTLY 181
>gi|170065332|ref|XP_001867895.1| cryptochrome-1 [Culex quinquefasciatus]
gi|167882412|gb|EDS45795.1| cryptochrome-1 [Culex quinquefasciatus]
Length = 539
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 92/140 (65%), Gaps = 21/140 (15%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
+ AVHW RKG+R+HDNPAL +A++ + ++L+P++ILDP +++RVGPNR
Sbjct: 5 QTAVHWFRKGLRVHDNPALAAAVDRVRGQPSKLVLRPVFILDPGIIRWLRVGPNR----- 59
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
L+VV+G P E+FP++F+ WN+ LLT+E+DIEPY+ KRD V ++
Sbjct: 60 ----------------LHVVRGNPVEMFPELFREWNVTLLTFEHDIEPYSVKRDATVREL 103
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
A++ KV+V+ S T+Y+ +
Sbjct: 104 ARQAKVEVQVEKSLTIYDPD 123
>gi|225875100|emb|CAQ86665.1| cryptochrome [Euphausia superba]
Length = 545
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 81/135 (60%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP L + + KG + ++I+DP F VG N+WRFL Q
Sbjct: 9 VVHWFRKGLRLHDNPTLKAGL-----KGATTF-RGIFIIDPWFAGSSNVGINKWRFLLQC 62
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L RL+VV+G+P V P +FKTW LT+E D EP+ K RD + +A+
Sbjct: 63 LEDLDTTLRKLNGRLFVVRGQPAHVLPQLFKTWGTTCLTFEKDPEPFGKVRDANITHIAR 122
Query: 128 EYKVKVEQHVSHTLY 142
E ++V SHTLY
Sbjct: 123 EMGIQVIIKTSHTLY 137
>gi|429544803|gb|AGA01579.1| cryptochrome 2 [Rhyparobia maderae]
Length = 586
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 82/139 (58%), Gaps = 6/139 (4%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
+P+ VHW RKG+RLHDNP+L + + ++ILDP F VG N+WRF
Sbjct: 6 SPKHTVHWFRKGLRLHDNPSLREGLKCAKT------FRCVFILDPWFAGSSNVGINKWRF 59
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L Q L DLD+ R L SRL+V++G+P + P +FK W LT+E D EP+ + RD +
Sbjct: 60 LLQCLEDLDRSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDQNIM 119
Query: 124 DMAKEYKVKVEQHVSHTLY 142
M KE + V VSHTLY
Sbjct: 120 AMCKELGISVITRVSHTLY 138
>gi|47212596|emb|CAF93038.1| unnamed protein product [Tetraodon nigroviridis]
Length = 662
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 67/174 (38%), Positives = 92/174 (52%), Gaps = 42/174 (24%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPAL A++ + L+ +Y+LDP F VG NRWRFL ++
Sbjct: 5 SVHWFRKGLRLHDNPALQEALSGADS------LRCVYVLDPWFAGAANVGINRWRFLLEA 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKT---------------------------- 99
L DLD + L SRL+VV+G+P +VFP + K
Sbjct: 59 LEDLDCSLKKLNSRLFVVRGQPTDVFPRLLKVGAGPVRSLVFQSADRAGAMIRASCRCLI 118
Query: 100 --------WNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
W + LT+EYD EPY K+RDG + MA+++ V+ SHTLYN +
Sbjct: 119 LSVCVPQEWKVTRLTFEYDPEPYGKERDGAIIKMAQQFGVETIVRNSHTLYNLD 172
>gi|255084421|ref|XP_002508785.1| predicted protein [Micromonas sp. RCC299]
gi|226524062|gb|ACO70043.1| predicted protein [Micromonas sp. RCC299]
Length = 566
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 83/137 (60%), Gaps = 6/137 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W RKG+R+HDNPAL+ A + ++P+++LDP F K RVG NR RFL +SL
Sbjct: 7 ILWFRKGLRVHDNPALVKACEGASA------VQPVFVLDPWFIKPERVGANRLRFLLESL 60
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD RA GS L V+ G P V P + W L +E+D EPYA+KRD V + A+
Sbjct: 61 TDLDASLRARGSSLLVLHGDPARVIPAALEAWRCDRLCYEFDTEPYAQKRDASVNEAARA 120
Query: 129 YKVKVEQHVSHTLYNTN 145
V+V VSHTL++ +
Sbjct: 121 LGVEVHAPVSHTLWDLD 137
>gi|145346348|ref|XP_001417651.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577879|gb|ABO95944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 562
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 77/133 (57%), Gaps = 6/133 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W RK +R+HDNPAL + I +P+++LDP F K RVG NR RFL QSL D
Sbjct: 16 WFRKALRVHDNPALAAGIARAKSA------QPVFVLDPWFCKPSRVGANRMRFLLQSLRD 69
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
LD R GS L V+ G+P V P KTW + L+TWE+DIEPYAK RD V +
Sbjct: 70 LDATLRERGSSLLVLHGEPRVVLPRACKTWKVDLVTWEHDIEPYAKMRDTAVRGALERAG 129
Query: 131 VKVEQHVSHTLYN 143
V+ HTLY+
Sbjct: 130 VECASSSGHTLYD 142
>gi|307207594|gb|EFN85258.1| Cryptochrome-1 [Harpegnathos saltator]
Length = 558
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 80/135 (59%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP+L + + + +++LDP F VG N+WRFL Q
Sbjct: 56 TVHWFRKGLRLHDNPSLREGLAGAST------FRCVFVLDPWFAGSTNVGINKWRFLLQC 109
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P + P +FK W LT+E D EP+ + RD + + K
Sbjct: 110 LEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCK 169
Query: 128 EYKVKVEQHVSHTLY 142
E + V Q VSHTLY
Sbjct: 170 ELGISVVQRVSHTLY 184
>gi|332021530|gb|EGI61895.1| Cryptochrome-1 [Acromyrmex echinatior]
Length = 671
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 80/135 (59%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP+L + + + +++LDP F VG N+WRFL Q
Sbjct: 25 TVHWFRKGLRLHDNPSLKEGLAGAST------FRCVFVLDPWFAGSTNVGINKWRFLLQC 78
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P + P +FK W LT+E D EP+ + RD + + K
Sbjct: 79 LEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTDLTFEEDPEPFGRVRDHNISALCK 138
Query: 128 EYKVKVEQHVSHTLY 142
E + V Q VSHTLY
Sbjct: 139 ELGISVVQRVSHTLY 153
>gi|340720203|ref|XP_003398531.1| PREDICTED: cryptochrome-1-like [Bombus terrestris]
Length = 574
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 79/135 (58%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP+L + + +++LDP F VG N+WRFL Q
Sbjct: 23 TVHWFRKGLRLHDNPSLREGLTGATT------FRCVFVLDPWFAGSTNVGINKWRFLLQC 76
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P + P +FK W LT+E D EP+ + RD + + K
Sbjct: 77 LEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCK 136
Query: 128 EYKVKVEQHVSHTLY 142
E + V Q VSHTLY
Sbjct: 137 ELGISVVQKVSHTLY 151
>gi|350420124|ref|XP_003492407.1| PREDICTED: cryptochrome-1 [Bombus impatiens]
gi|129593762|gb|ABO31112.1| cryptochrome 2 protein [Bombus impatiens]
Length = 574
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 79/135 (58%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP+L + + +++LDP F VG N+WRFL Q
Sbjct: 23 TVHWFRKGLRLHDNPSLREGLTGATT------FRCVFVLDPWFAGSTNVGINKWRFLLQC 76
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P + P +FK W LT+E D EP+ + RD + + K
Sbjct: 77 LEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCK 136
Query: 128 EYKVKVEQHVSHTLY 142
E + V Q VSHTLY
Sbjct: 137 ELGISVVQKVSHTLY 151
>gi|307190470|gb|EFN74495.1| Cryptochrome-1 [Camponotus floridanus]
Length = 525
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 80/135 (59%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP+L + + + +++LDP F VG N+WRFL Q
Sbjct: 25 TVHWFRKGLRLHDNPSLKEGLAGAST------FRCVFVLDPWFAGSTNVGINKWRFLLQC 78
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P + P +FK W LT+E D EP+ + RD + + K
Sbjct: 79 LEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDSEPFGRVRDHNISALCK 138
Query: 128 EYKVKVEQHVSHTLY 142
E + V Q VSHTLY
Sbjct: 139 ELGISVVQKVSHTLY 153
>gi|77166866|gb|ABA62409.1| cryptochrome 2 [Danaus plexippus]
gi|357623166|gb|EHJ74426.1| cryptochrome 2 [Danaus plexippus]
Length = 742
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 79/135 (58%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNPAL + + ++I+DP F VG N+WRFL Q
Sbjct: 31 TVHWFRKGLRLHDNPALREGL------VDATTFRCVFIIDPWFASSSNVGINKWRFLLQC 84
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD+ R L SRL+VV+G+P + P +F+ W LT+E D EPY + RD + +
Sbjct: 85 LEDLDKNLRKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIMTKCR 144
Query: 128 EYKVKVEQHVSHTLY 142
E ++V VSHTLY
Sbjct: 145 EVGIQVTSRVSHTLY 159
>gi|383863231|ref|XP_003707085.1| PREDICTED: cryptochrome-1-like [Megachile rotundata]
Length = 589
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 80/135 (59%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP+L + + + +++LDP F VG N+WRFL Q
Sbjct: 23 TVHWFRKGLRLHDNPSLREGLAGAST------FRCVFVLDPWFAGSTNVGINKWRFLLQC 76
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P + P +FK W LT+E D EP+ + RD + + K
Sbjct: 77 LEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCK 136
Query: 128 EYKVKVEQHVSHTLY 142
E + V Q VSHTLY
Sbjct: 137 ELGISVVQKVSHTLY 151
>gi|380017772|ref|XP_003692819.1| PREDICTED: cryptochrome-1-like [Apis florea]
Length = 571
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 80/135 (59%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP+L + + + +++LDP F +G N+WRFL Q
Sbjct: 23 TVHWFRKGLRLHDNPSLREGLAGAST------FRCVFVLDPWFAGSTNIGINKWRFLLQC 76
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P + P +FK W LT+E D EP+ + RD + + K
Sbjct: 77 LEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCK 136
Query: 128 EYKVKVEQHVSHTLY 142
E + V Q VSHTLY
Sbjct: 137 ELGISVVQKVSHTLY 151
>gi|136255185|ref|NP_001077099.1| cryptochrome 2 [Apis mellifera]
gi|133754347|gb|ABO38437.1| cryptochrome 2 [Apis mellifera]
Length = 570
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 80/135 (59%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP+L + + + +++LDP F +G N+WRFL Q
Sbjct: 23 TVHWFRKGLRLHDNPSLREGLAGAST------FRCVFVLDPWFAGSTNIGINKWRFLLQC 76
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P + P +FK W LT+E D EP+ + RD + + K
Sbjct: 77 LEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCK 136
Query: 128 EYKVKVEQHVSHTLY 142
E + V Q VSHTLY
Sbjct: 137 ELGISVVQKVSHTLY 151
>gi|307611921|ref|NP_001182627.1| cryptochrome 2 [Bombyx mori]
gi|306416110|gb|ADM86933.1| cryptochrome 2 [Bombyx mori]
gi|306416114|gb|ADM86935.1| cryptochrome 2 [Bombyx mori]
Length = 730
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 79/135 (58%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+R+HDNPAL I + + ++I+DP F VG N+WRFL Q
Sbjct: 35 TVHWFRKGLRIHDNPALREGI------IDAVTFRCVFIIDPWFASSSNVGINKWRFLLQC 88
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD+ + L SRL+VV+G+P + P +F+ W LT+E D EPY + RD + +
Sbjct: 89 LEDLDKSLKKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIISKCR 148
Query: 128 EYKVKVEQHVSHTLY 142
E + V VSHTLY
Sbjct: 149 EVGITVTSRVSHTLY 163
>gi|321471119|gb|EFX82092.1| CRY-M [Daphnia pulex]
Length = 553
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 84/136 (61%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP+L + KG + + ++ILDP F V N+WRFL +S
Sbjct: 13 VVHWFRKGLRLHDNPSLKDGL-----KGCSTY-RCIFILDPWFAGSSNVDINKWRFLLES 66
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLDQ R L SRL+V++G+P V P +FK W LT+E D EP+ + RD + M K
Sbjct: 67 LEDLDQNLRKLNSRLFVIRGQPAGVLPKLFKEWETTCLTFEEDPEPFGRVRDQNIITMCK 126
Query: 128 EYKVKVEQHVSHTLYN 143
++ ++V SHTLY+
Sbjct: 127 DFNIEVITRASHTLYH 142
>gi|242020203|ref|XP_002430545.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
corporis]
gi|212515709|gb|EEB17807.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
corporis]
Length = 506
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 80/135 (59%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP+L I ++ + ++++DP F VG N+WRFL Q
Sbjct: 13 TVHWFRKGLRLHDNPSLREGIK------NSVTFRCVFVIDPWFAGSSNVGINKWRFLLQC 66
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD+ R L SRL+V++G+P + P +FK W LT+E D EP+ + RD + M K
Sbjct: 67 LEDLDRSLRKLNSRLFVIRGQPADTLPKLFKEWGTTNLTFEEDPEPFGRVRDLNIMAMCK 126
Query: 128 EYKVKVEQHVSHTLY 142
E + V SHTLY
Sbjct: 127 ELGISVVSKSSHTLY 141
>gi|47218319|emb|CAG04151.1| unnamed protein product [Tetraodon nigroviridis]
Length = 625
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 92/166 (55%), Gaps = 34/166 (20%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWR----- 62
+HW RKG+RLHDNP+L ++ + ++ +YILDP F VG NRWR
Sbjct: 5 TIHWFRKGLRLHDNPSLKDSLLGADS------VRCVYILDPWFAGSSNVGINRWRICLRS 58
Query: 63 ------------FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT----------- 99
FL QSL DLD R L SRL+V++G+P +VFP +FK
Sbjct: 59 PLTVSQEQEALRFLLQSLEDLDSSLRKLNSRLFVIRGQPTDVFPRLFKAHPTVAVYVPQE 118
Query: 100 WNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
WNI L++EYD EP+ K+RD ++ +A E V+V +SHTLY+ +
Sbjct: 119 WNISRLSYEYDSEPFGKERDAAIKKLASEAGVEVTVCISHTLYDLD 164
>gi|333755446|gb|ADN94465.2| cryptochrome 2 [Helicoverpa armigera]
Length = 657
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 77/134 (57%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+RLHDNPAL + + ++I+DP F VG N+WRFL Q L
Sbjct: 39 VHWFRKGLRLHDNPALREGL------LDAATFRCVFIIDPWFASSSNVGINKWRFLLQCL 92
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD R L SRL+VV+G+P + P +F+ W LT+E D EPY + RD + +E
Sbjct: 93 EDLDSSLRKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIMSKCRE 152
Query: 129 YKVKVEQHVSHTLY 142
+ V VSHTLY
Sbjct: 153 VGITVTSRVSHTLY 166
>gi|148533563|gb|ABQ84983.1| antennal cryptochrome 2 [Spodoptera littoralis]
Length = 625
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 77/134 (57%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+RLHDNPAL K + ++I+DP F VG N+WRFL Q L
Sbjct: 40 VHWFRKGLRLHDNPAL------KEGLLDAATFRCVFIIDPWFASSSNVGINKWRFLLQCL 93
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD R L SRL+VV+G+P + P +F+ W LT+E D EPY + RD + +E
Sbjct: 94 EDLDSSLRKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIMSKCRE 153
Query: 129 YKVKVEQHVSHTLY 142
+ V VSHTLY
Sbjct: 154 VGITVTSRVSHTLY 167
>gi|298708156|emb|CBJ30497.1| cryptochrome 1 [Ectocarpus siliculosus]
Length = 542
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 86/137 (62%), Gaps = 7/137 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRKFMRVGPNRWRFLQQ 66
++HW RKG+RLHDN ALL A N L PL++LD R GP R FL +
Sbjct: 9 SIHWFRKGLRLHDNRALLEACN------GTASLYPLFVLDSDPASPESRAGPLRTAFLLE 62
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SL DLD++ RA GSRL+VV+GKPEEV P +F+ WN+K LT+E D EP ++ RD V +A
Sbjct: 63 SLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDREVGSLA 122
Query: 127 KEYKVKVEQHVSHTLYN 143
KE V+V + TL N
Sbjct: 123 KEAGVQVLIRGTSTLRN 139
>gi|386762985|gb|AFJ22639.1| cryptochrome 2 [Agrotis ipsilon]
Length = 812
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 78/134 (58%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+RLHDNPAL K+ + ++I+DP F VG N+WRFL Q L
Sbjct: 63 VHWFRKGLRLHDNPAL------KDGLVDAATFRCVFIIDPWFASSSNVGINKWRFLLQCL 116
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD R L SRL+VV+G+P + P +F+ W L++E D EPY + RD + +E
Sbjct: 117 EDLDSSLRKLNSRLFVVRGQPADALPKLFREWGTTALSFEEDPEPYGRVRDHNIMSKCRE 176
Query: 129 YKVKVEQHVSHTLY 142
+ V VSHTLY
Sbjct: 177 VGITVTSRVSHTLY 190
>gi|133754342|gb|ABO38435.1| cryptochrome 2 [Antheraea pernyi]
Length = 788
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 77/135 (57%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNPAL + + ++I+DP F VG N+WRFL Q
Sbjct: 36 TVHWFRKGLRLHDNPALREGL------VNATTFRCVFIIDPWFASSSNVGINKWRFLLQC 89
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD + L SRL+VV+G+P + P +F+ W LT+E D EPY + RD + +
Sbjct: 90 LEDLDSSLKKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNITTKCR 149
Query: 128 EYKVKVEQHVSHTLY 142
E + V VSHTLY
Sbjct: 150 EVGINVISRVSHTLY 164
>gi|404313305|gb|AFR54427.1| cryptochrome 2 [Mythimna separata]
Length = 757
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 78/134 (58%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RKG+RLHDNPAL K+ + ++I+DP F VG N+WRFL Q L
Sbjct: 25 VHWFRKGLRLHDNPAL------KDGLVDATTFRCVFIIDPWFASSSNVGINKWRFLLQCL 78
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD R L SRL+VV+G+P + P +F+ W L++E D EPY + RD + +E
Sbjct: 79 EDLDSSLRKLNSRLFVVRGQPADALPKLFREWGTTALSFEEDPEPYGRVRDHNIMSKCRE 138
Query: 129 YKVKVEQHVSHTLY 142
+ V VSHTLY
Sbjct: 139 VGITVTSRVSHTLY 152
>gi|444245671|gb|AGD94517.1| cryptochrome, partial [Solenopsis invicta]
Length = 573
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 80/135 (59%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP+L + + + +++LDP F VG N+WRFL Q
Sbjct: 25 TVHWFRKGLRLHDNPSLKEGLAGAST------FRCVFVLDPWFAGSTNVGINKWRFLLQC 78
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P + P +FK W LT+E D EP+ + RD + + +
Sbjct: 79 LEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCE 138
Query: 128 EYKVKVEQHVSHTLY 142
E + V Q +SHTLY
Sbjct: 139 ELGISVVQRISHTLY 153
>gi|134032019|ref|NP_001076794.1| cryptochrome 2 [Tribolium castaneum]
gi|133754349|gb|ABO38438.1| cryptochrome 2 [Tribolium castaneum]
gi|270008089|gb|EFA04537.1| cryptochrome 2 [Tribolium castaneum]
Length = 535
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 82/135 (60%), Gaps = 6/135 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW R+G+RLHDNP+L + KG + +++LDP F VG N+WRFL Q L
Sbjct: 20 VHWFRRGLRLHDNPSLREGL-----KGARTF-RCVFVLDPWFAGSSNVGINKWRFLLQCL 73
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD+ R L SRL+V++G+P + P +FK W LT+E D EP+ RD + + +E
Sbjct: 74 EDLDRSLRKLNSRLFVIRGQPADALPKLFKEWGTTALTFEEDPEPFGGVRDHNLTTLCQE 133
Query: 129 YKVKVEQHVSHTLYN 143
+ V Q VSHTLY+
Sbjct: 134 LGISVVQKVSHTLYH 148
>gi|384248771|gb|EIE22254.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Coccomyxa
subellipsoidea C-169]
Length = 482
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 91/142 (64%), Gaps = 6/142 (4%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
P+ ++ W RKG+RLHDNP+LL+AI KG L P+++LDP F K VG NR F
Sbjct: 6 APQRSILWFRKGLRLHDNPSLLAAI-----KGATHLY-PVFVLDPWFLKPDVVGVNRLNF 59
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L +SL DL +A GS L V++G P++V P ++K WNI L +E D E YA++RD +
Sbjct: 60 LLESLTDLRSSLQARGSNLLVLRGNPQDVLPRVWKDWNITRLCFEADTEDYAEERDTKIT 119
Query: 124 DMAKEYKVKVEQHVSHTLYNTN 145
A+E ++V VSHTLY+T+
Sbjct: 120 AAAQEAGIEVISCVSHTLYDTS 141
>gi|345483304|ref|XP_001606405.2| PREDICTED: cryptochrome-1 [Nasonia vitripennis]
Length = 627
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 79/135 (58%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP+L + + + +++LDP F V N+WRFL Q
Sbjct: 65 TVHWFRKGLRLHDNPSLREGLAGAST------FRCVFVLDPWFAGSANVSINKWRFLLQC 118
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD+ L SRL+V++G+P + P +F+ W LT+E D EPY + RD + + K
Sbjct: 119 LEDLDRSLHQLNSRLFVIRGQPADALPKLFREWGTTSLTFEEDPEPYGRVRDENITTLCK 178
Query: 128 EYKVKVEQHVSHTLY 142
E + V Q VSHTLY
Sbjct: 179 ELGITVVQRVSHTLY 193
>gi|334348060|ref|XP_003342014.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-1-like [Monodelphis
domestica]
Length = 585
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 83/136 (61%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A HW RK +RL NPAL I +G + + +YI DP F G N W+FL Q
Sbjct: 5 AGHWFRKRLRLPHNPALKGCI-----QGADTVCC-VYIRDPWFGGSSNFGANEWKFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>gi|156378195|ref|XP_001631029.1| predicted protein [Nematostella vectensis]
gi|156218062|gb|EDO38966.1| predicted protein [Nematostella vectensis]
Length = 498
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 85/136 (62%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDN L AI + + ++ LD K +V PN WRFL +S
Sbjct: 4 SVHWFRKGLRLHDNEPLRRAIEGSDT------FRGIFFLDKAAVKNAKVSPNGWRFLIES 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLDQ + SRL+++QG+P +VFP + K WNI LT+EYD EP+ ++RD V+ +A+
Sbjct: 58 LRDLDQSLQKYNSRLFIIQGQPIDVFPKLIKQWNISKLTFEYDSEPFPRQRDLAVKRIAE 117
Query: 128 EYKVKVEQHVSHTLYN 143
+ V V SHTLY+
Sbjct: 118 KAGVDVIVCSSHTLYD 133
>gi|308803621|ref|XP_003079123.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
gi|116057578|emb|CAL53781.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
Length = 1646
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 59/135 (43%), Positives = 77/135 (57%), Gaps = 6/135 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W RK +R+HDNPAL + +P+++LDP F + RVG NR RFL QSL D
Sbjct: 1104 WFRKALRVHDNPALSRGTLHATA------CQPVFVLDPWFCQPSRVGANRMRFLLQSLRD 1157
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
LD + RA GS L V+ G+P V P K W + +TWE+DIEPYAK RD V +
Sbjct: 1158 LDAQLRARGSSLLVLHGEPRVVLPRACKKWRVDSVTWEHDIEPYAKIRDAAVRGALERAG 1217
Query: 131 VKVEQHVSHTLYNTN 145
V+ HTLY+ +
Sbjct: 1218 VECHAASGHTLYDVD 1232
>gi|283806654|ref|NP_001164573.1| chryptochrome 2-2 [Acyrthosiphon pisum]
gi|283476385|emb|CAY26040.1| chryptochrome 2-2 [Acyrthosiphon pisum]
Length = 512
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 79/136 (58%), Gaps = 8/136 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSA-INYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
VHW RKG+R+HDNP+L IN K + ++ILDP F VG N+WRFL Q
Sbjct: 6 TVHWFRKGLRIHDNPSLREGLINAKT-------FRCIFILDPWFAGASNVGINKWRFLLQ 58
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
L+DLD + L SRL+V++G+P E P +F+ W T+E D EP+ + RD ++ M
Sbjct: 59 CLSDLDNSLKKLNSRLFVIKGQPAEALPKLFRQWGTTNFTFEEDPEPFGRVRDQNIKVMC 118
Query: 127 KEYKVKVEQHVSHTLY 142
E + V SHTLY
Sbjct: 119 SEMGISVITRCSHTLY 134
>gi|283806650|ref|NP_001164572.1| chryptochrome 2-1 [Acyrthosiphon pisum]
gi|283476383|emb|CAY26039.1| chryptochrome 2-1 [Acyrthosiphon pisum]
Length = 512
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 79/136 (58%), Gaps = 8/136 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSA-INYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
VHW RKG+R+HDNP+L IN K + ++ILDP F VG N+WRFL Q
Sbjct: 6 TVHWFRKGLRIHDNPSLREGLINAKT-------FRCIFILDPWFAGASNVGINKWRFLLQ 58
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
L+DLD + L SRL+V++G+P E P +F+ W T+E D EP+ + RD ++ M
Sbjct: 59 CLSDLDNSLKKLNSRLFVIKGQPAEALPKLFRQWGTTNFTFEEDPEPFGRVRDQNIKVMC 118
Query: 127 KEYKVKVEQHVSHTLY 142
E + V SHTLY
Sbjct: 119 SELGISVITRCSHTLY 134
>gi|47212597|emb|CAF93039.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats.
Identities = 65/174 (37%), Positives = 90/174 (51%), Gaps = 42/174 (24%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RKG+RLHDNPAL A++ + L+ +Y+LDP F VG NRWRFL ++
Sbjct: 5 SVHWFRKGLRLHDNPALQEALSGADS------LRCVYVLDPWFAGAANVGINRWRFLLEA 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKT---------------------------- 99
L DLD + L SRL+VV+G+P +VFP + K
Sbjct: 59 LEDLDCSLKKLNSRLFVVRGQPTDVFPRLLKVGAGPVRSLVFQSADRAGAMIRASCRCLI 118
Query: 100 --------WNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
W + LT+EYD Y K+RDG + MA+++ V+ SHTLYN +
Sbjct: 119 LSVCVPQEWKVTRLTFEYDPRAYGKERDGAIIKMAQQFGVETIVRNSHTLYNLD 172
>gi|443710319|gb|ELU04573.1| hypothetical protein CAPTEDRAFT_178510 [Capitella teleta]
Length = 597
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 86/135 (63%), Gaps = 6/135 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R+ +RLHDN AL+ + + + ++ILDP F +VG N+WRFL QSL
Sbjct: 21 LYWFRRCLRLHDNAALVEVLKEADT------FRCIFILDPWFAGASQVGINKWRFLLQSL 74
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD + R L SRL+V++G+P ++FP +F+ W+I L +E D EP+ K+RD V +++
Sbjct: 75 EDLDSRLRKLNSRLFVIRGQPTDIFPKLFQKWDISALAFEEDPEPFGKERDSAVCTKSQD 134
Query: 129 YKVKVEQHVSHTLYN 143
++V SHTL+N
Sbjct: 135 AGIEVIIKTSHTLFN 149
>gi|51948352|gb|AAU14280.1| cryptochrome-like protein 1 [Ostreococcus tauri]
Length = 559
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 77/135 (57%), Gaps = 6/135 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W RK +R+HDNPAL + +P+++LDP F + RVG NR RFL QSL D
Sbjct: 17 WFRKALRVHDNPALSRGTLHATA------CQPVFVLDPWFCQPSRVGANRMRFLLQSLRD 70
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
LD + RA GS L V+ G+P V P K W + +TWE+DIEPYAK RD V +
Sbjct: 71 LDAQLRARGSSLLVLHGEPRVVLPRACKKWRVDSVTWEHDIEPYAKIRDAAVRGALERAG 130
Query: 131 VKVEQHVSHTLYNTN 145
V+ HTLY+ +
Sbjct: 131 VECHAASGHTLYDVD 145
>gi|302745160|gb|ADL62683.1| cryptochrome 3, partial [Phreatichthys andruzzii]
Length = 475
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 72/106 (67%)
Query: 40 LKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99
++ +YILDP F VG NRWRFL SL DLD R L SRL+VV+G+P +VFP +FK
Sbjct: 9 VRCVYILDPWFAGSANVGVNRWRFLLDSLEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKE 68
Query: 100 WNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
WN+ LT+EYD EPY K+RD + MA+EY V+ +HTLYN +
Sbjct: 69 WNVTRLTFEYDSEPYGKERDAAIIKMAQEYGVQTVVRNTHTLYNPD 114
>gi|390351006|ref|XP_786331.2| PREDICTED: cryptochrome-1-like [Strongylocentrotus purpuratus]
Length = 439
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 80/139 (57%), Gaps = 6/139 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+HW R G+RLHDNPALL + E P++I D G NRWRFL
Sbjct: 6 CIHWFRHGLRLHDNPALLEGMTLGKE------FYPVFIFDNEVAGTKTSGYNRWRFLHDC 59
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD++ +A G RL+V G P +F ++F W ++ LT+E D EP +RD V+ + K
Sbjct: 60 LVDLDEQLKAAGGRLFVFHGDPCLIFKEMFLEWGVRYLTFESDPEPIWTERDRRVKALCK 119
Query: 128 EYKVKVEQHVSHTLYNTNL 146
E KV+ + VSHTL+N ++
Sbjct: 120 EMKVECIERVSHTLWNPDI 138
>gi|167736303|dbj|BAG07408.1| cryptochrome-m [Riptortus pedestris]
Length = 538
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 78/135 (57%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
VHW RKG+RLHDNP+L +N + ++ILDP F VG N+WRFL Q
Sbjct: 6 TVHWFRKGLRLHDNPSLRHGLNGAKT------FRCIFILDPWFANASNVGINKWRFLLQC 59
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD+ L SRL+V++G+P ++ P + K W LT+E D EP+ + RD + M +
Sbjct: 60 LEDLDRSLMKLNSRLFVIRGQPADILPKLLKEWGTTCLTFEEDPEPFGRVRDQNIMAMCR 119
Query: 128 EYKVKVEQHVSHTLY 142
+ V V+HTLY
Sbjct: 120 GMNITVISLVAHTLY 134
>gi|145881071|gb|ABP97099.1| cryptochrome CRY2 [Acropora millepora]
Length = 520
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 85/139 (61%), Gaps = 6/139 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++HW RK +RLHDNP+L + +N K + +Y L P K V NRW FL +S
Sbjct: 20 SLHWFRKDLRLHDNPSLRECL--RNSK----VFYGVYFLPPSEAKQGSVSLNRWGFLLES 73
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD GSRL+V++G P E+ P++FK WNI +++E D EPY+ RD ++ +AK
Sbjct: 74 LRDLDTSLVECGSRLFVIRGNPVEMLPNLFKKWNINQMSFEVDSEPYSNSRDLVISHLAK 133
Query: 128 EYKVKVEQHVSHTLYNTNL 146
E ++V VSHTLY+ +
Sbjct: 134 ENGIEVISRVSHTLYDPRI 152
>gi|156383457|ref|XP_001632850.1| predicted protein [Nematostella vectensis]
gi|156219912|gb|EDO40787.1| predicted protein [Nematostella vectensis]
Length = 492
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 90/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW RK +RLHDNP+LL++++ + P+Y+LD + ++ NRW FL +
Sbjct: 4 SVHWFRKDLRLHDNPSLLASLDNCST------FFPIYVLDMESARASKISANRWNFLCEC 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L LD++ R LGSRL+V++G+ +V P +F W++ LT+E + EP ++RD +++ +A+
Sbjct: 58 LEALDRQLRVLGSRLFVIRGRAIDVLPRLFHEWSVNRLTFERESEPAGRQRDTVIQMLAE 117
Query: 128 EYKVKVEQHVSHTLYNTN 145
V++ QH +H LY+T+
Sbjct: 118 NANVQLLQHNAHLLYDTD 135
>gi|326437928|gb|EGD83498.1| DNA photolyase [Salpingoeca sp. ATCC 50818]
Length = 540
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 86/136 (63%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++HW RKG+RLHDN A KG + P+++LDPHF K VG R+ FL +S
Sbjct: 7 SIHWFRKGLRLHDN-----AALLAALKGAKQVY-PVFVLDPHFAKPEFVGVVRYNFLLES 60
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD+ R LGSRLYV++GKP + + FK W + LT+E D EPYAK RD ++A+
Sbjct: 61 LRDLDKSLRTLGSRLYVLKGKPLQALEEKFKEWEVTRLTFERDTEPYAKLRDTQARELAE 120
Query: 128 EYKVKVEQHVSHTLYN 143
++ ++V V HTL++
Sbjct: 121 KHGIEVITTVGHTLHD 136
>gi|303283874|ref|XP_003061228.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457579|gb|EEH54878.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 559
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 84/145 (57%), Gaps = 8/145 (5%)
Query: 1 MGGTPEC--AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGP 58
MGG + ++HW RKG+R+HDNPAL+ A ++P+++LDP F RVG
Sbjct: 1 MGGEDKTTRSIHWFRKGLRVHDNPALVDAC------ADATAVQPIFVLDPWFLTPSRVGA 54
Query: 59 NRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR 118
NR RFL QSL DLD RA GS L V++G P+ V P + W LT E D EPYA R
Sbjct: 55 NRVRFLLQSLTDLDASLRARGSSLLVLRGDPKAVVPAALRAWGCDRLTHEVDTEPYASAR 114
Query: 119 DGLVEDMAKEYKVKVEQHVSHTLYN 143
D V D AK +V+ SHTLY+
Sbjct: 115 DAAVRDAAKRVGAEVKTFASHTLYD 139
>gi|224051116|ref|XP_002198900.1| PREDICTED: cryptochrome-2, partial [Taeniopygia guttata]
Length = 540
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/103 (53%), Positives = 70/103 (67%)
Query: 43 LYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI 102
+YILDP F VG NRWRFL QSL DLD R L SRL+VV+G+P +VFP +FK W +
Sbjct: 1 IYILDPWFAATSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGV 60
Query: 103 KLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
LT+EYD EP+ K+RD + +AKE V+V SHTLY+ +
Sbjct: 61 TRLTFEYDSEPFGKERDAAIVKLAKEAGVEVVIENSHTLYDLD 103
>gi|168002746|ref|XP_001754074.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
subsp. patens]
gi|162694628|gb|EDQ80975.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
subsp. patens]
Length = 526
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 84/145 (57%), Gaps = 15/145 (10%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK---------FMRVGP 58
++ W RKG+RLHDNPALL + + + P+++LDP F VG
Sbjct: 5 SLMWFRKGLRLHDNPALLRSCEGASH------VYPVFVLDPWFLAPDPTAPSPGSKLVGV 58
Query: 59 NRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR 118
NR RFL QSL DLD+ R GSRL V+ G P V P++ W I L +E+D EPYA+ R
Sbjct: 59 NRIRFLLQSLEDLDENLRKHGSRLLVLHGNPTTVIPELLMKWQINELCFEFDTEPYAQDR 118
Query: 119 DGLVEDMAKEYKVKVEQHVSHTLYN 143
D ++ +A +Y V+V VSHTL+N
Sbjct: 119 DADIKKLATKYGVEVFSPVSHTLFN 143
>gi|307103112|gb|EFN51376.1| hypothetical protein CHLNCDRAFT_7260, partial [Chlorella
variabilis]
Length = 491
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 65/144 (45%), Positives = 88/144 (61%), Gaps = 14/144 (9%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++ W RKG+RLHDNPALL+A + L P++ILDP F K ++G NR +FL +S
Sbjct: 1 SIIWFRKGLRLHDNPALLAAAAGADH------LCPIFILDPWFLKSDKIGVNRIQFLLES 54
Query: 68 LADLDQKFRALGSRLYVVQGKPEEV--------FPDIFKTWNIKLLTWEYDIEPYAKKRD 119
L DLD FRA GSRL V++G+ EE P + W + L +E+D EPYAK+RD
Sbjct: 55 LTDLDASFRARGSRLLVLRGRSEEAPSCQAAASLPGALQEWGVTRLCFEHDTEPYAKRRD 114
Query: 120 GLVEDMAKEYKVKVEQHVSHTLYN 143
V +A+ V+V VSHTLY+
Sbjct: 115 VAVRQLAEAAGVEVVAPVSHTLYD 138
>gi|133754344|gb|ABO38436.1| (6-4) photolyase [Danaus plexippus]
Length = 501
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 86/138 (62%), Gaps = 4/138 (2%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+HW R +RLHDN AL +AIN + Q +L+P+Y++DP + RVG NR RFL QS
Sbjct: 7 VIHWFRLDLRLHDNLALRNAINEAENRKQ--ILRPIYVIDPDIKN--RVGCNRLRFLFQS 62
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L +LD R + +RLYV++GK E P +F W++K LT + DI+ K+D ++E+ +
Sbjct: 63 LKNLDTSLRKINTRLYVIKGKAIECLPKLFDEWHVKFLTLQVDIDADLVKQDEVIEEFCE 122
Query: 128 EYKVKVEQHVSHTLYNTN 145
+ V + + HT+Y+ N
Sbjct: 123 ANNIFVVKRMQHTVYDFN 140
>gi|37521318|ref|NP_924695.1| photolyase [Gloeobacter violaceus PCC 7421]
gi|35212315|dbj|BAC89690.1| photolyase [Gloeobacter violaceus PCC 7421]
Length = 490
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 81/135 (60%), Gaps = 6/135 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W RKG+RLHDNPALL A PL+I+DP F RVG NR RFL +SL +
Sbjct: 7 WFRKGLRLHDNPALLDAARDAARL------YPLFIVDPWFVNPERVGVNRMRFLLESLGE 60
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
+D R LGSRL V+QG+P+EV + W I L +E D EPYA++RD + MA+
Sbjct: 61 IDGNLRRLGSRLIVLQGRPQEVLERVLSRWQIGRLCFERDTEPYARRRDEAIRSMAERVG 120
Query: 131 VKVEQHVSHTLYNTN 145
V+V +HTLY+ +
Sbjct: 121 VRVISPTAHTLYDPD 135
>gi|260829106|ref|XP_002609503.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
gi|229294860|gb|EEN65513.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
Length = 522
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 84/140 (60%), Gaps = 8/140 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK--FMRVGPNRWRFLQ 65
+HW RKG+R HDNP+LL A+ + + P++++D F K +R G N+WRF+
Sbjct: 9 TIHWFRKGLRFHDNPSLLHALRTSHH------VYPVFVMDLDFMKDFKIRSGANQWRFVI 62
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+ L DLD + RA G RL+V +G E F + F+ WNI LT + + E Y + RD V +
Sbjct: 63 ECLQDLDTRLRAYGLRLFVARGNAEAFFAEHFRKWNITQLTHDVETEHYHRFRDAAVRKI 122
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
A + V+V +V+HTLYN +
Sbjct: 123 AVDEGVEVVNYVAHTLYNID 142
>gi|397603437|gb|EJK58421.1| hypothetical protein THAOC_21454 [Thalassiosira oceanica]
Length = 564
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 83/136 (61%), Gaps = 5/136 (3%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+HW RKG+RLHDNPALL A++ G + P+Y++DP+ + ++ NR RFL +
Sbjct: 10 AMHWFRKGLRLHDNPALLHALSLTKNGGS---IFPVYVVDPNSYQLLKCSVNRARFLLEC 66
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYD--IEPYAKKRDGLVEDM 125
DLD+ + GSRLYV G P EV P+++K + + +T E D EPYA +RD V +
Sbjct: 67 CQDLDESLKRCGSRLYVATGDPVEVLPEMWKKFGVTHMTHESDETGEPYALQRDTAVAAV 126
Query: 126 AKEYKVKVEQHVSHTL 141
AK+ V+V S TL
Sbjct: 127 AKDAGVEVIDFTSETL 142
>gi|317106754|dbj|BAJ53248.1| JHL25H03.11 [Jatropha curcas]
Length = 536
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 85/142 (59%), Gaps = 15/142 (10%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK---------FMRVGPNRW 61
W RKG+R+HDNPAL A KG N + P++++DPH+ K R G NR
Sbjct: 10 WFRKGLRIHDNPALEYA-----SKGSNFVY-PVFVIDPHYMKPDPNAFSPGSTRAGLNRI 63
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
+FL +SLADLD + LGS+L V++G+P +V K W++K + +EYD +PY + D
Sbjct: 64 KFLLESLADLDLSLKKLGSKLLVLKGEPSQVLISCLKEWDVKRVCFEYDTDPYYQALDVK 123
Query: 122 VEDMAKEYKVKVEQHVSHTLYN 143
V+D A ++V VSHTL+N
Sbjct: 124 VKDFASSVGIEVFSPVSHTLFN 145
>gi|224002945|ref|XP_002291144.1| Cryptochrome/Photolyase family 1 [Thalassiosira pseudonana
CCMP1335]
gi|220972920|gb|EED91251.1| Cryptochrome/Photolyase family 1, partial [Thalassiosira pseudonana
CCMP1335]
Length = 556
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 83/136 (61%), Gaps = 4/136 (2%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+HW RKG+R+HDNPALL A+ + I P+YI+DP+ + ++ R RFL +
Sbjct: 15 AMHWFRKGLRVHDNPALLHALAITKDTSGPIY--PVYIVDPNCYQLLKCSVLRARFLLEC 72
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYD--IEPYAKKRDGLVEDM 125
++DLD+ R GSRLYV G P EV P+++K W + +T E D EPYA RD V +
Sbjct: 73 ISDLDKSLRERGSRLYVATGDPLEVLPELWKEWGVTHVTHEADETGEPYAVARDEGVRSV 132
Query: 126 AKEYKVKVEQHVSHTL 141
AK+ V+V + S TL
Sbjct: 133 AKKNGVQVMEFRSETL 148
>gi|297834434|ref|XP_002885099.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
gi|297330939|gb|EFH61358.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 85/150 (56%), Gaps = 15/150 (10%)
Query: 3 GTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKF--------- 53
T ++ W RKG+R+HDNPAL A KG + P++++DPH+ +
Sbjct: 2 ATRSGSLIWFRKGLRVHDNPALEFA-----SKGSEFMF-PVFVIDPHYMESDPSAFSPGS 55
Query: 54 MRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEP 113
R G NR RFL +SL DLD + LGSRL V++G+P EV + W +K L +EYD +P
Sbjct: 56 SRAGVNRIRFLLESLKDLDSSLKKLGSRLLVLKGEPGEVLFRCLQEWKVKRLCFEYDTDP 115
Query: 114 YAKKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
Y K D V+D A V+V VSHTL+N
Sbjct: 116 YYKALDVKVKDYASSTGVEVFSPVSHTLFN 145
>gi|260800305|ref|XP_002595074.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae]
gi|229280316|gb|EEN51085.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae]
Length = 507
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 84/140 (60%), Gaps = 8/140 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKF--MRVGPNRWRFLQ 65
+HW RKG+R HDNP+LL A+ + P+Y++D ++ K +R G N WRF+
Sbjct: 9 TIHWFRKGLRFHDNPSLLHALRTSRH------VYPVYVVDQNWMKEHDIRYGANWWRFVI 62
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
Q L +LD + R G RL+VV+G E+ F + F+ W + LT + D EP+ + RD V +
Sbjct: 63 QCLEELDTRLRKYGLRLFVVRGSAEDFFKEHFRKWKVTQLTHDVDTEPFYRIRDVAVRKI 122
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
A + V+V HV+HTLY+ +
Sbjct: 123 ASDMGVEVVTHVAHTLYDID 142
>gi|156383451|ref|XP_001632847.1| predicted protein [Nematostella vectensis]
gi|156219909|gb|EDO40784.1| predicted protein [Nematostella vectensis]
Length = 159
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 83/143 (58%), Gaps = 8/143 (5%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR 60
M + HW RK +RLHDNPAL A++ + +++L +F + G NR
Sbjct: 1 MDAARHTSCHWFRKDLRLHDNPALKDALDNAD------CFYGVFVL-SNFHPSITSG-NR 52
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
W+FL Q L DL+ LGS+L ++ G P E+FP + + + LT+E D EP+A++RD
Sbjct: 53 WKFLLQCLQDLNNSLEELGSKLIILTGSPVEIFPKLLHSLKVTKLTFEVDTEPFAQQRDS 112
Query: 121 LVEDMAKEYKVKVEQHVSHTLYN 143
++ +A+ ++V+ H SHTLY+
Sbjct: 113 VISHIARSAGIEVKTHASHTLYD 135
>gi|302795740|ref|XP_002979633.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
gi|300152881|gb|EFJ19522.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
Length = 527
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 90/148 (60%), Gaps = 15/148 (10%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK---------FMRVGP 58
A+ W RKG+RLHDNP+L +A + +N+ P+++LDP F RVG
Sbjct: 2 ALLWFRKGLRLHDNPSLEAACH----GSRNVY--PVFVLDPWFLAPDPRASSPGSARVGI 55
Query: 59 NRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR 118
NR +FL +SL DLD+ + GS+L +V G P +V P++ W I+ L +E+D EPYA R
Sbjct: 56 NRIQFLLESLQDLDRNLSSRGSKLLLVHGNPIQVIPELLDKWRIRKLCFEFDTEPYALDR 115
Query: 119 DGLVEDMAKEYKVKVEQHVSHTLYNTNL 146
D +++ AK+ +++ VSHT++N +L
Sbjct: 116 DAKIKEHAKDKGIELHCPVSHTIFNPDL 143
>gi|358368155|dbj|GAA84772.1| DNA photolyase [Aspergillus kawachii IFO 4308]
Length = 664
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 83/143 (58%), Gaps = 7/143 (4%)
Query: 5 PECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFL 64
P + W R +RLHDNPAL +A++ P++ DPH+ +RVGPNRWRFL
Sbjct: 7 PSTVIFWHRTDLRLHDNPALQAALSLNPS-----TFIPIFTWDPHYAYRVRVGPNRWRFL 61
Query: 65 QQSLADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
+ +DL Q +R L +L+VV+ P+ VFP +FK W L +E D + YA++RD V
Sbjct: 62 LECQSDLSQSYRKLNPKQKLWVVREAPQTVFPKLFKAWGATHLVFESDTDGYARERDETV 121
Query: 123 EDMAKEYKVKVEQHVSHTLYNTN 145
+AKE V+V TL++++
Sbjct: 122 IKLAKEAGVEVIVKSGRTLFDSD 144
>gi|197246983|gb|AAI64413.1| Cry4 protein [Danio rerio]
Length = 558
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 84/137 (61%), Gaps = 7/137 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF-RKFMRVGPNRWRFLQQ 66
+H RKG+RLHDNP+LL A+ + L P+Y+LD F + M +G RWRFL Q
Sbjct: 5 TIHLFRKGLRLHDNPSLLGAL------ASSSTLYPVYVLDRVFLQGAMHMGALRWRFLLQ 58
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SL DLD + RA+GSRL+V+ G + ++ W I ++++ ++EPY + D ++ +A
Sbjct: 59 SLEDLDTRLRAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVA 118
Query: 127 KEYKVKVEQHVSHTLYN 143
+E ++ +SHTLY+
Sbjct: 119 QENGLQTYTCISHTLYD 135
>gi|18400841|ref|NP_566520.1| (6-4)DNA photolyase [Arabidopsis thaliana]
gi|306756349|sp|O48652.2|UVR3_ARATH RecName: Full=(6-4)DNA photolyase; AltName: Full=Protein UV repair
defective 3
gi|332642182|gb|AEE75703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
Length = 556
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 84/150 (56%), Gaps = 15/150 (10%)
Query: 3 GTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKF--------- 53
T ++ W RKG+R+HDNPAL A KG + P++++DPH+ +
Sbjct: 21 ATGSGSLIWFRKGLRVHDNPALEYA-----SKGSEFMY-PVFVIDPHYMESDPSAFSPGS 74
Query: 54 MRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEP 113
R G NR RFL +SL DLD + LGSRL V +G+P EV + W +K L +EYD +P
Sbjct: 75 SRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDP 134
Query: 114 YAKKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
Y + D V+D A V+V VSHTL+N
Sbjct: 135 YYQALDVKVKDYASSTGVEVFSPVSHTLFN 164
>gi|27882257|gb|AAH44385.1| Cry4 protein [Danio rerio]
Length = 579
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 84/137 (61%), Gaps = 7/137 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF-RKFMRVGPNRWRFLQQ 66
+H RKG+RLHDNP+LL A+ + L P+Y+LD F + M +G RWRFL Q
Sbjct: 26 TIHLFRKGLRLHDNPSLLGAL------ASSSTLYPVYVLDRVFLQGAMHMGALRWRFLLQ 79
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SL DLD + RA+GSRL+V+ G + ++ W I ++++ ++EPY + D ++ +A
Sbjct: 80 SLEDLDTRLRAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVA 139
Query: 127 KEYKVKVEQHVSHTLYN 143
+E ++ +SHTLY+
Sbjct: 140 QENGLQTYTCISHTLYD 156
>gi|79313247|ref|NP_001030703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
gi|332642183|gb|AEE75704.1| (6-4)DNA photolyase [Arabidopsis thaliana]
Length = 445
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 84/150 (56%), Gaps = 15/150 (10%)
Query: 3 GTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKF--------- 53
T ++ W RKG+R+HDNPAL A KG + P++++DPH+ +
Sbjct: 21 ATGSGSLIWFRKGLRVHDNPALEYA-----SKGSEFMY-PVFVIDPHYMESDPSAFSPGS 74
Query: 54 MRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEP 113
R G NR RFL +SL DLD + LGSRL V +G+P EV + W +K L +EYD +P
Sbjct: 75 SRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDP 134
Query: 114 YAKKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
Y + D V+D A V+V VSHTL+N
Sbjct: 135 YYQALDVKVKDYASSTGVEVFSPVSHTLFN 164
>gi|388582367|gb|EIM22672.1| hypothetical protein WALSEDRAFT_53945 [Wallemia sebi CBS 633.66]
Length = 554
Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 83/137 (60%), Gaps = 5/137 (3%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+HW R +RLHD PAL+ + K E P++ DP+F VGPNR++FL +++
Sbjct: 6 LHWFRTDLRLHDAPALVKGLELKPE-----AFFPVWAWDPYFNFDCPVGPNRYKFLIETM 60
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+LD K +G++L+V + P ++FP +FK WNI L +E D PYA +RD ++ +A +
Sbjct: 61 NELDGKLNDMGNKLHVFRADPADLFPALFKQWNITHLVYEKDPAPYAVERDEKIKQIATD 120
Query: 129 YKVKVEQHVSHTLYNTN 145
KV+V HTLY+ +
Sbjct: 121 AKVEVLDITGHTLYDID 137
>gi|443724902|gb|ELU12703.1| hypothetical protein CAPTEDRAFT_226189 [Capitella teleta]
Length = 564
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 6/144 (4%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRW 61
G + VHW R G+RLHDNP+L+ + E L P++ILD G NR
Sbjct: 23 GDRDQVVVHWFRHGLRLHDNPSLMEGLRNCKE------LYPIFILDGEVAGTGTAGYNRM 76
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
RFL Q L DLD+ F+ G RLY+ +G P ++ +F W + LT+E D EP + RD
Sbjct: 77 RFLHQCLEDLDKSFQKFGGRLYIFKGNPVDILAALFDEWQVTKLTFEQDPEPIWEDRDNK 136
Query: 122 VEDMAKEYKVKVEQHVSHTLYNTN 145
V+D+ + V + +SHTL++ +
Sbjct: 137 VKDLCMKRDVTYVERISHTLFHPD 160
>gi|228312124|pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure
gi|228312125|pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure
gi|228312126|pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure
gi|2804280|dbj|BAA24449.1| 6-4 photolyase [Arabidopsis thaliana]
gi|3929918|dbj|BAA34711.1| 6-4 photolyase [Arabidopsis thaliana]
gi|11994334|dbj|BAB02293.1| 6-4 photolyase [Arabidopsis thaliana]
Length = 537
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 84/150 (56%), Gaps = 15/150 (10%)
Query: 3 GTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKF--------- 53
T ++ W RKG+R+HDNPAL A KG + P++++DPH+ +
Sbjct: 2 ATGSGSLIWFRKGLRVHDNPALEYA-----SKGSEFMY-PVFVIDPHYMESDPSAFSPGS 55
Query: 54 MRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEP 113
R G NR RFL +SL DLD + LGSRL V +G+P EV + W +K L +EYD +P
Sbjct: 56 SRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDP 115
Query: 114 YAKKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
Y + D V+D A V+V VSHTL+N
Sbjct: 116 YYQALDVKVKDYASSTGVEVFSPVSHTLFN 145
>gi|449491122|ref|XP_004158807.1| PREDICTED: (6-4)DNA photolyase-like [Cucumis sativus]
Length = 544
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 84/145 (57%), Gaps = 15/145 (10%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK---------FMRVGP 58
++ W RKG+R+HDNPAL A KG L P++++DPH+ + R G
Sbjct: 7 SLMWFRKGIRIHDNPALEYA-----AKGAKFLY-PVFVIDPHYMEPDPSAFSLGSSRAGL 60
Query: 59 NRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR 118
NR RFL +SL DLD + LGSRL V+ G+P EV K WN+K L +EYD +PY +
Sbjct: 61 NRIRFLLESLVDLDLNLKKLGSRLLVLHGEPGEVLIRCLKEWNVKKLCFEYDTDPYYQAL 120
Query: 119 DGLVEDMAKEYKVKVEQHVSHTLYN 143
D V++ A ++V VSHTL+N
Sbjct: 121 DIRVQNHASAAGIEVFSPVSHTLFN 145
>gi|449436599|ref|XP_004136080.1| PREDICTED: (6-4)DNA photolyase-like [Cucumis sativus]
Length = 549
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 84/145 (57%), Gaps = 15/145 (10%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK---------FMRVGP 58
++ W RKG+R+HDNPAL A KG L P++++DPH+ + R G
Sbjct: 7 SLMWFRKGIRIHDNPALEYA-----AKGAKFLY-PVFVIDPHYMEPDPSAFSLGSSRAGL 60
Query: 59 NRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR 118
NR RFL +SL DLD + LGSRL V+ G+P EV K WN+K L +EYD +PY +
Sbjct: 61 NRIRFLLESLVDLDLNLKKLGSRLLVLHGEPGEVLIRCLKEWNVKKLCFEYDTDPYYQAL 120
Query: 119 DGLVEDMAKEYKVKVEQHVSHTLYN 143
D V++ A ++V VSHTL+N
Sbjct: 121 DIRVQNHASAAGIEVFSPVSHTLFN 145
>gi|66910424|gb|AAH97079.1| Cry4 protein [Danio rerio]
Length = 418
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 84/137 (61%), Gaps = 7/137 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF-RKFMRVGPNRWRFLQQ 66
+H RKG+RLHDNP+LL A+ + L P+Y+LD F + M +G RWRFL Q
Sbjct: 5 TIHLFRKGLRLHDNPSLLGAL------ASSSALYPVYVLDRVFLQGAMHMGALRWRFLLQ 58
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SL DLD + +A+GSRL+V+ G + ++ W I ++++ ++EPY + D ++ +A
Sbjct: 59 SLEDLDTRLQAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVA 118
Query: 127 KEYKVKVEQHVSHTLYN 143
+E ++ VSHTLY+
Sbjct: 119 QENGLQTYTCVSHTLYD 135
>gi|312371404|gb|EFR19605.1| hypothetical protein AND_22153 [Anopheles darlingi]
Length = 608
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKG-QNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+ W R G+RLHDNP+LL A+ + + + L P++I D VG NR +FL +S
Sbjct: 67 ILWFRHGLRLHDNPSLLEALKSDCQSSNEPVKLFPVFIFDGESAGTRVVGYNRMKFLLES 126
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LADLD++FR LG +L V +G E V +F+ NIK L +E D EP ++RD V + +
Sbjct: 127 LADLDRQFRELGGQLLVFRGDSETVLRRLFEELNIKKLCFEQDCEPIWRERDERVTKLCE 186
Query: 128 EYKVKVEQHVSHTLYNTN 145
VK ++VSHTL+N N
Sbjct: 187 TMDVKCVENVSHTLWNPN 204
>gi|412988942|emb|CCO15533.1| predicted protein [Bathycoccus prasinos]
Length = 574
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 92/156 (58%), Gaps = 13/156 (8%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSA-INYKNEKGQNILLK--PLYILDPHFRKFMRVG 57
MG ++ W RKG+R+HDNPAL A I+ KN G + K PL+ILDP F VG
Sbjct: 1 MGNEATTSIVWFRKGLRIHDNPALSEALIDAKNFGGGDESKKVLPLFILDPWFCNEKSVG 60
Query: 58 PNRWRFLQQSLADLDQKFRALGS---------RLYVVQGKPEEVFPDIFKTWNIKLLTWE 108
NR FL QSL +L++ +L S L VVQGKP++V P++ K +N+ + +E
Sbjct: 61 ANRMNFLLQSLTNLNENLGSLLSIENVNDANNCLTVVQGKPKDVLPNVIKKFNVSSVYFE 120
Query: 109 YD-IEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
+ +EP+ K+RD + +M K+ V V + SHTLY+
Sbjct: 121 KEQVEPFGKQRDEEIIEMCKKLNVDVNTYASHTLYD 156
>gi|158301399|ref|XP_321104.4| AGAP001958-PA [Anopheles gambiae str. PEST]
gi|205696380|sp|Q7PYI7.4|CRY1_ANOGA RecName: Full=Cryptochrome-1; Short=agCRY1
gi|78191295|gb|ABB29886.1| cryptochrome 1 [Anopheles gambiae]
gi|157012451|gb|EAA01270.4| AGAP001958-PA [Anopheles gambiae str. PEST]
Length = 545
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 83/137 (60%), Gaps = 2/137 (1%)
Query: 9 VHWIRKGMRLHDNPALLSAI--NYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
+ W R G+RLHDNP+LL A+ + N+ + + L P++I D VG NR +FL +
Sbjct: 6 ILWFRHGLRLHDNPSLLEALKSDCVNQSSEAVKLFPIFIFDGESAGTRIVGYNRMKFLLE 65
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SLADLD++FR LG +L V +G V +F+ NIK L +E D EP K+RD V +
Sbjct: 66 SLADLDRQFRDLGGQLLVFRGDSVTVLRRLFEELNIKKLCYEQDCEPIWKERDDAVAKLC 125
Query: 127 KEYKVKVEQHVSHTLYN 143
+ V+ ++VSHTL+N
Sbjct: 126 RTMDVRCVENVSHTLWN 142
>gi|157104635|ref|XP_001648498.1| DNA photolyase [Aedes aegypti]
gi|122106526|sp|Q17DK5.1|CRY1_AEDAE RecName: Full=Cryptochrome-1
gi|108880271|gb|EAT44496.1| AAEL004146-PA [Aedes aegypti]
Length = 545
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 81/135 (60%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R G+RLHDNP+LL A+ +++ L P++I D VG NR +FL +SL
Sbjct: 6 ILWFRHGLRLHDNPSLLEALRNDGTGSESVRLYPIFIFDGESAGTKLVGFNRMKFLLESL 65
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
ADLD++ R +G +LYV +G V +F+ NI+ L +E D EP K RD ++++ +
Sbjct: 66 ADLDRQLREIGGQLYVFKGNAVNVMRRLFEELNIRKLCFEQDCEPIWKARDDAIQNLCRM 125
Query: 129 YKVKVEQHVSHTLYN 143
VK + VSHTL++
Sbjct: 126 MDVKCVEKVSHTLWD 140
>gi|359483005|ref|XP_002285327.2| PREDICTED: (6-4)DNA photolyase [Vitis vinifera]
Length = 564
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 83/146 (56%), Gaps = 15/146 (10%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK---------FMRVGP 58
++ W RKG+R+HDNPAL A N + P++++DP+F + R G
Sbjct: 33 SLMWFRKGLRIHDNPALQHAAKESN------CVYPVFVIDPYFMEPDPNAFSPGSSRAGL 86
Query: 59 NRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR 118
NR RFL +SL DLD R LGSRL V++G P EV K W +K L +EYD +PY +
Sbjct: 87 NRIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIRCLKEWEVKRLCFEYDTDPYYQAL 146
Query: 119 DGLVEDMAKEYKVKVEQHVSHTLYNT 144
D V++ A ++V VSHTL+++
Sbjct: 147 DIKVKNYASAAGIEVFSPVSHTLFDS 172
>gi|297743390|emb|CBI36257.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 83/146 (56%), Gaps = 15/146 (10%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK---------FMRVGP 58
++ W RKG+R+HDNPAL A N + P++++DP+F + R G
Sbjct: 7 SLMWFRKGLRIHDNPALQHAAKESN------CVYPVFVIDPYFMEPDPNAFSPGSSRAGL 60
Query: 59 NRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR 118
NR RFL +SL DLD R LGSRL V++G P EV K W +K L +EYD +PY +
Sbjct: 61 NRIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIRCLKEWEVKRLCFEYDTDPYYQAL 120
Query: 119 DGLVEDMAKEYKVKVEQHVSHTLYNT 144
D V++ A ++V VSHTL+++
Sbjct: 121 DIKVKNYASAAGIEVFSPVSHTLFDS 146
>gi|18858471|ref|NP_571862.1| cryptochrome 4 [Danio rerio]
gi|8698594|dbj|BAA96851.1| cryptochrome 4 [Danio rerio]
Length = 558
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 84/137 (61%), Gaps = 7/137 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF-RKFMRVGPNRWRFLQQ 66
+H RKG+RLHDNP+LL A+ + L P+Y+LD F + M +G RWRFL Q
Sbjct: 5 TIHLFRKGLRLHDNPSLLGAL------ASSSALYPVYVLDRVFLQGAMHMGALRWRFLLQ 58
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SL DLD + +A+GSRL+V+ G + ++ W I ++++ ++EPY + D ++ +A
Sbjct: 59 SLEDLDTRLQAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVA 118
Query: 127 KEYKVKVEQHVSHTLYN 143
+E ++ VSHTLY+
Sbjct: 119 QENGLQTYTCVSHTLYD 135
>gi|350633368|gb|EHA21733.1| Hypothetical protein ASPNIDRAFT_184343 [Aspergillus niger ATCC
1015]
Length = 640
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 7/141 (4%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
V W R +RLHDNPAL +A++ K P++ DPH+ +RVGPNRWRFL +
Sbjct: 8 TVVFWHRTDLRLHDNPALQAALSLKPS-----TFIPIFTWDPHYAYRVRVGPNRWRFLLE 62
Query: 67 SLADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
DL Q + L +L+VV+ P+ VFP +FK W L +E D + YA++RD V
Sbjct: 63 CQKDLSQSYSKLNPKQKLWVVREAPQTVFPKLFKAWGATHLVFESDTDGYARERDETVTK 122
Query: 125 MAKEYKVKVEQHVSHTLYNTN 145
+AKE V+V TL++++
Sbjct: 123 LAKEAGVEVIVKSGRTLFDSD 143
>gi|358055721|dbj|GAA98066.1| hypothetical protein E5Q_04748 [Mixia osmundae IAM 14324]
Length = 601
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 81/138 (58%), Gaps = 7/138 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ K + +L P + DP + RVGPNRW+FL +S+
Sbjct: 5 IYWFRTDLRLHDSPALQAALDLKPD-----VLFPTWCFDPRYVYEQRVGPNRWKFLLESM 59
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
+D + S+L+V++G P + P + + W I + WE D +PY +RD VE +A
Sbjct: 60 SDTSAAITKVNPKSQLFVLRGHPTTILPALLRKWKISDIVWEKDDDPYTMERDKAVEKLA 119
Query: 127 KEYKVKVEQHVSHTLYNT 144
K+ VKV HTLY+
Sbjct: 120 KDAGVKVHVVHGHTLYDA 137
>gi|255553063|ref|XP_002517574.1| DNA photolyase, putative [Ricinus communis]
gi|223543206|gb|EEF44738.1| DNA photolyase, putative [Ricinus communis]
Length = 537
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 15/152 (9%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK-------- 52
M + ++ W RKG+R+HDNPAL A KG + P++++DPH+ +
Sbjct: 1 MAPSGSSSLMWFRKGLRVHDNPALDYA-----SKGSKFVY-PVFVIDPHYMEPDPNAFSP 54
Query: 53 -FMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDI 111
R G NR RFL +SL DLD + LGS+L V++G+P +V K W+++ L +EYD
Sbjct: 55 GSSRAGINRIRFLLESLVDLDLSLKKLGSKLLVLRGEPSQVLIRCLKIWDVEKLCFEYDT 114
Query: 112 EPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
+ Y + D V++ A +++V VSHTL+N
Sbjct: 115 DSYYQALDAKVKEYASSARIEVFSPVSHTLFN 146
>gi|317036499|ref|XP_001397458.2| DNA photolyase [Aspergillus niger CBS 513.88]
Length = 641
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 7/141 (4%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
+ W R +RLHDNPAL +A++ P++ DPH+ +RVGPNRWRFL +
Sbjct: 8 TVIFWHRTDLRLHDNPALQAALSLNPS-----TFIPIFTWDPHYAYQVRVGPNRWRFLLE 62
Query: 67 SLADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
DL Q +R L +L+VV+ P+ VFP +FK W L +E D + YA++RD +
Sbjct: 63 CQNDLSQSYRKLNPKQKLWVVREAPQTVFPKLFKAWGATHLVFESDTDGYARERDETIRK 122
Query: 125 MAKEYKVKVEQHVSHTLYNTN 145
+A E V+V TL++++
Sbjct: 123 LANEAGVEVIVKSGRTLFDSD 143
>gi|134082999|emb|CAK42762.1| unnamed protein product [Aspergillus niger]
Length = 567
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 7/141 (4%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
+ W R +RLHDNPAL +A++ P++ DPH+ +RVGPNRWRFL +
Sbjct: 8 TVIFWHRTDLRLHDNPALQAALSLNPS-----TFIPIFTWDPHYAYQVRVGPNRWRFLLE 62
Query: 67 SLADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
DL Q +R L +L+VV+ P+ VFP +FK W L +E D + YA++RD +
Sbjct: 63 CQNDLSQSYRKLNPKQKLWVVREAPQTVFPKLFKAWGATHLVFESDTDGYARERDETIRK 122
Query: 125 MAKEYKVKVEQHVSHTLYNTN 145
+A E V+V TL++++
Sbjct: 123 LANEAGVEVIVKSGRTLFDSD 143
>gi|110626125|ref|NP_001034685.1| cryptochrome 4 [Gallus gallus]
gi|34500076|gb|AAQ73619.1| cryptochrome-like protein [Gallus gallus]
Length = 529
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 7/139 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF-RKFMRVGPNRWRFLQQ 66
+H RKG+RLHDNPALL+A+ ++ P+YILD F M +G RW FL Q
Sbjct: 5 TIHLFRKGLRLHDNPALLAALQSSE------VVYPVYILDRAFMTSSMHIGALRWHFLLQ 58
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SL DL R LGS L V+QG+ E V D + WNI +T + ++EP+ K+ + + +
Sbjct: 59 SLEDLRSSLRQLGSCLLVIQGEYESVVRDHVQKWNITQVTLDAEMEPFYKEMEANIRGLG 118
Query: 127 KEYKVKVEQHVSHTLYNTN 145
+E +V + H+LYNT
Sbjct: 119 EELGFQVLSLMGHSLYNTQ 137
>gi|451997801|gb|EMD90266.1| hypothetical protein COCHEDRAFT_1139413, partial [Cochliobolus
heterostrophus C5]
Length = 650
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 82/139 (58%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ E L P++ DPH+ RVGPNRW++L
Sbjct: 7 IYWFRTDLRLHDSPALKAALDLDPE-----CLYPVWTWDPHYVYRARVGPNRWQYLIDCQ 61
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL + L S+L++++ P+ +FP +FK WNI L +E D + YA++RD V ++A
Sbjct: 62 NDLSKSITKLNPKSKLFLIREAPQTLFPKLFKAWNITHLVFEKDTDAYARERDAKVMEIA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
K+ V V TLY+ +
Sbjct: 122 KQAGVDVITKTGRTLYDPD 140
>gi|451847270|gb|EMD60578.1| hypothetical protein COCSADRAFT_244496 [Cochliobolus sativus
ND90Pr]
Length = 654
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 82/139 (58%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ E L P++ DPH+ RVGPNRW++L
Sbjct: 7 IYWFRTDLRLHDSPALKAALDLDPE-----CLYPVWTWDPHYVYRARVGPNRWQYLIDCQ 61
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL + L S+L++++ P+ +FP +FK WNI L +E D + YA++RD V ++A
Sbjct: 62 NDLSKSITKLNPKSKLFLIREAPQTLFPKLFKAWNITHLVFEKDTDAYARERDAKVMEIA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
K+ V V TLY+ +
Sbjct: 122 KQAGVDVITKTGRTLYDPD 140
>gi|224073768|ref|XP_002304163.1| predicted protein [Populus trichocarpa]
gi|222841595|gb|EEE79142.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 87/152 (57%), Gaps = 15/152 (9%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF-----RKFMR 55
M + ++ W RKG+R+HDNPAL A KG + + P++++DPH+ + F
Sbjct: 1 MAASGSGSIIWFRKGLRIHDNPALEYA-----SKGSDFVY-PVFVIDPHYMEPDPKAFSP 54
Query: 56 ----VGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDI 111
G NR RFL +SL DLD + LGSRL +++G+P +V K W +K L +EYD
Sbjct: 55 GSRLAGLNRIRFLLESLVDLDTSLKKLGSRLLILRGEPGQVLTRCLKEWGVKKLCFEYDT 114
Query: 112 EPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
+P+ + D V++ A ++V VSHTL+N
Sbjct: 115 DPHYQALDIRVKEYASAAGIEVFSPVSHTLFN 146
>gi|19772572|gb|AAL46564.1| cryptochrome 2 [Gallus gallus]
Length = 531
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 62/90 (68%)
Query: 56 VGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYA 115
VG NRWRFL QSL DLD R L SRL+VV+G+P +VFP +FK W + L +EYD EP+
Sbjct: 5 VGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEYDSEPFG 64
Query: 116 KKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
K+RD + +AKE V+V SHTLYN +
Sbjct: 65 KERDAAIIKLAKEAGVEVVIENSHTLYNLD 94
>gi|449271617|gb|EMC81901.1| Cryptochrome-1 [Columba livia]
Length = 525
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 7/141 (4%)
Query: 5 PECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF-RKFMRVGPNRWRF 63
P +H RKG+RLHDNP LL+A+ E + I P+Y+LD F M +G RW F
Sbjct: 2 PHRTIHLFRKGLRLHDNPTLLAAL----ESSETIY--PVYVLDRRFLASAMHIGALRWHF 55
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L QSL DL + LG+RL V+QG+ E V D + WNI +T + ++EP+ K+ + +
Sbjct: 56 LLQSLEDLHKNLSRLGARLLVIQGEYESVLRDHVQKWNITQVTLDAEMEPFYKEMEANIR 115
Query: 124 DMAKEYKVKVEQHVSHTLYNT 144
+ E +V V H+LY+T
Sbjct: 116 RLGAELGFEVLSRVGHSLYDT 136
>gi|62001759|gb|AAX58599.1| cryptochrome [Danaus plexippus]
gi|357603254|gb|EHJ63675.1| cryptochrome [Danaus plexippus]
Length = 534
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 81/137 (59%), Gaps = 5/137 (3%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R G+RLHDNP+L SA+ + P++I D VG NR R+L ++L
Sbjct: 6 VIWFRHGLRLHDNPSLHSALEDASSP-----FFPIFIFDGETAGTKMVGYNRMRYLLEAL 60
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLDQ+FR G +L +++G+P+ +F +++ + I+ L +E D EP + RD V + ++
Sbjct: 61 NDLDQQFRKYGGKLLMIKGRPDLIFRRLWEEFGIRTLCFEQDCEPIWRPRDASVRALCRD 120
Query: 129 YKVKVEQHVSHTLYNTN 145
V +HV+HTL+N +
Sbjct: 121 IGVSCREHVAHTLWNPD 137
>gi|302745154|gb|ADL62680.1| criptochrome 1b, partial [Phreatichthys andruzzii]
Length = 564
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 61/88 (69%)
Query: 56 VGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYA 115
VG NRWRFL Q L DLD R L SRL+V++G+P +VFP +FK W I L++EYD EP+
Sbjct: 4 VGINRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKITRLSYEYDSEPFG 63
Query: 116 KKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
K RD ++ +A E V+V +SHTLY+
Sbjct: 64 KDRDAAIKKLATEAGVEVFVRISHTLYD 91
>gi|307611923|ref|NP_001182628.1| cryptochrome 1 [Bombyx mori]
gi|306416108|gb|ADM86932.1| cryptochrome 1 [Bombyx mori]
gi|306416112|gb|ADM86934.1| cryptochrome 1 [Bombyx mori]
Length = 536
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 80/138 (57%), Gaps = 5/138 (3%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+V W R G+RLHDNP+L SA+ + P++I D VG NR R+L ++
Sbjct: 5 SVLWFRHGLRLHDNPSLHSALEETSGP-----FFPIFIFDGETAGTKVVGYNRMRYLLEA 59
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD++F+ G RL +V+GKP VF +++ + I+ L +E D EP + RD V+ +
Sbjct: 60 LDDLDKQFKKYGGRLLLVKGKPSAVFRRLWEEFGIRKLCFEQDCEPVWRPRDESVKTACR 119
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V +HVSHTL+ +
Sbjct: 120 EIGVTCREHVSHTLWEPD 137
>gi|396460940|ref|XP_003835082.1| hypothetical protein LEMA_P072250.1 [Leptosphaeria maculans JN3]
gi|312211632|emb|CBX91717.1| hypothetical protein LEMA_P072250.1 [Leptosphaeria maculans JN3]
Length = 709
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 81/139 (58%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ K + L P++ DPH+ RVGPNRW++L
Sbjct: 53 IYWFRTDLRLHDSPALKAALDLKPD-----CLYPIWTWDPHYVYRARVGPNRWQYLLDCQ 107
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL + + S+L+V++ P+ +FP +FK W I L +E D + Y ++RD V ++A
Sbjct: 108 KDLSKSITKVNPQSKLFVIREAPQTLFPKLFKAWQITHLVFEKDTDAYGRERDEQVMELA 167
Query: 127 KEYKVKVEQHVSHTLYNTN 145
K V+V TLY+ +
Sbjct: 168 KTAGVEVVVKTGRTLYDPD 186
>gi|330915233|ref|XP_003296949.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1]
gi|311330639|gb|EFQ94953.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1]
Length = 655
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 81/139 (58%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ L P++ DPH+ RVGPNRW++L
Sbjct: 7 IYWFRTDLRLHDSPALKAALDL-----NPTCLYPIWTWDPHYVYRARVGPNRWQYLLDCQ 61
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL + L S+L+V++ P+ +FP +FK W I L +E D + YA++RD V ++A
Sbjct: 62 NDLSKSITKLNPKSKLFVIREAPQTLFPKLFKAWKITHLVFEKDTDAYARERDDKVLEIA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
K+ V+V TLY+ +
Sbjct: 122 KKAGVEVVVKTGRTLYDPD 140
>gi|195451205|ref|XP_002072813.1| GK13802 [Drosophila willistoni]
gi|194168898|gb|EDW83799.1| GK13802 [Drosophila willistoni]
Length = 543
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 81/138 (58%), Gaps = 6/138 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R G+RLHDNPALLSA+ +K Q I L P++I D VG NR RFL SL
Sbjct: 10 VIWFRHGLRLHDNPALLSALA---DKDQGIALIPIFIFDGESAGTKDVGYNRMRFLLDSL 66
Query: 69 ADLDQKFRALG---SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
DLD K + RL++ QG+P+E+F + + +K + +E D EP +RD V+ +
Sbjct: 67 QDLDGKVQQATEGRGRLHIFQGQPKEIFRRLHQQLQLKKICFEQDCEPIWSQRDASVKSL 126
Query: 126 AKEYKVKVEQHVSHTLYN 143
+E ++ + VSHTL++
Sbjct: 127 CQELGIEWVEMVSHTLWD 144
>gi|359073433|ref|XP_002693610.2| PREDICTED: cryptochrome-2 [Bos taurus]
Length = 591
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 78/144 (54%), Gaps = 7/144 (4%)
Query: 3 GTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWR 62
G +VHW RKG+RLHDNPALL+A+ + ++ +YILDP F VG NRW
Sbjct: 16 GDGASSVHWFRKGLRLHDNPALLAAVRGAH------CVRCVYILDPWFAASSSVGINRWS 69
Query: 63 FLQQSLADLDQKFRAL-GSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
L + L + RA S G E + + + W + LT+EYD EP+ K+RD
Sbjct: 70 RLCRKTPTLRRGSRATEPSPRRGEAGTGEAIMIPVVQEWGVTRLTFEYDSEPFGKERDTA 129
Query: 122 VEDMAKEYKVKVEQHVSHTLYNTN 145
+ MAKE V+V SHTLY+ +
Sbjct: 130 IMKMAKEAGVEVVTENSHTLYDLD 153
>gi|62955979|gb|AAY23345.1| antennal cryptochrome [Mamestra brassicae]
Length = 548
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 81/138 (58%), Gaps = 5/138 (3%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+V W R G+RLHDNP+L SA+ EKG P++I D VG NR R+L ++
Sbjct: 5 SVLWFRHGLRLHDNPSLHSALE---EKGFPFF--PVFIFDGETAGTKVVGYNRMRYLLEA 59
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD + + G RL +++GKP VF +++ + I+ L +E D EP + RD V+ K
Sbjct: 60 LEDLDNQLKKHGGRLIMIKGKPNVVFRRLWEEFGIRRLCFEQDCEPVWRARDDSVKSACK 119
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V ++HVSHTL+ +
Sbjct: 120 EIGVVCKEHVSHTLWEPD 137
>gi|194332801|ref|NP_001123706.1| uncharacterized protein LOC100170456 [Xenopus (Silurana)
tropicalis]
gi|189442599|gb|AAI67313.1| LOC100170456 protein [Xenopus (Silurana) tropicalis]
Length = 557
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 79/140 (56%), Gaps = 7/140 (5%)
Query: 5 PECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRV-GPNRWRF 63
P +H RKG+RLHDNP L++A+ + ++ P+YILD +F V G RW F
Sbjct: 2 PHRTIHIFRKGLRLHDNPTLVTALETSD------VVYPVYILDRNFMTSSSVIGSKRWNF 55
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
QS+ DL + L S L+V+QG E V + + WNI +T++ +IEPY K D +
Sbjct: 56 FLQSIEDLHCNLQKLNSCLFVIQGDYERVLREHVEKWNITQVTFDLEIEPYYKGLDERIR 115
Query: 124 DMAKEYKVKVEQHVSHTLYN 143
M +E +V V+HTLY+
Sbjct: 116 AMGQELGFEVVSMVAHTLYD 135
>gi|356526185|ref|XP_003531700.1| PREDICTED: (6-4)DNA photolyase-like [Glycine max]
Length = 535
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 81/142 (57%), Gaps = 15/142 (10%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK---------FMRVGPNRW 61
W RKG+R+HDNPAL A +G + L P++++DPHF + R G NR
Sbjct: 10 WFRKGLRIHDNPALEVA-----SRGASHLY-PVFVIDPHFMEPDPNSSAPGSSRAGLNRI 63
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
+FL + L DLD + LGSRL +++G P EV K ++K L +EYD EPY + D
Sbjct: 64 KFLLECLVDLDLNLKNLGSRLLILKGDPAEVVIRCLKELHVKKLCFEYDTEPYYQALDVK 123
Query: 122 VEDMAKEYKVKVEQHVSHTLYN 143
V++ A ++V VSHTL+N
Sbjct: 124 VKNFALAAGIEVFSPVSHTLFN 145
>gi|326933621|ref|XP_003212899.1| PREDICTED: cryptochrome-1-like [Meleagris gallopavo]
Length = 530
Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 79/139 (56%), Gaps = 7/139 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF-RKFMRVGPNRWRFLQQ 66
+H RKG+RLHDNPALL+A+ ++ P+YILD F M +G RW FL Q
Sbjct: 5 TIHLFRKGLRLHDNPALLAALQSSE------VVYPVYILDRAFMTSSMHIGALRWHFLLQ 58
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SL DL LGS L V+QG+ + V D + WNI +T + ++EP+ K+ + + +
Sbjct: 59 SLEDLRSSLCQLGSCLLVIQGEYDAVVRDHVQKWNITQVTLDAEMEPFYKEMEANIRALG 118
Query: 127 KEYKVKVEQHVSHTLYNTN 145
+E +V + H+LYNT
Sbjct: 119 EELGFEVLSLMGHSLYNTQ 137
>gi|224085023|ref|XP_002198533.1| PREDICTED: cryptochrome-1-like [Taeniopygia guttata]
Length = 527
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF-RKFMRVGPNRWRFLQQ 66
+H RK +RLHDNP LL+A+ L P+YILD F M +G RW FL Q
Sbjct: 5 TIHLFRKELRLHDNPVLLAALESSEA------LYPVYILDRAFLTSSMHIGALRWNFLLQ 58
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SL DL + LGS L V+QG+ E V D + WNI +T + ++EP+ K+ + ++ +
Sbjct: 59 SLEDLHKNLGQLGSCLLVIQGEYEIVLRDHIQKWNITQVTLDAEMEPFYKEMEANIQRLG 118
Query: 127 KEYKVKVEQHVSHTLYNTN 145
E +V VSH+LYNT
Sbjct: 119 AELGFEVLSLVSHSLYNTQ 137
>gi|148226272|ref|NP_001088990.1| Cry1 protein [Xenopus laevis]
gi|49899105|gb|AAH76838.1| Cry1 protein [Xenopus laevis]
Length = 556
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 7/141 (4%)
Query: 5 PECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRV-GPNRWRF 63
P +H RKG+RLHDNP L++A+ + ++ P+YILD +F V G RW F
Sbjct: 2 PHRTIHIFRKGLRLHDNPTLVAALETSD------IIYPVYILDKNFMTSSSVIGSKRWNF 55
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L QS+ DL + L S L+V+QG + V + + W+I +T++ +IEPY K D +
Sbjct: 56 LLQSIEDLHCNLQKLNSCLFVIQGDYQSVLREHVQKWHITQVTFDLEIEPYYKGMDERIR 115
Query: 124 DMAKEYKVKVEQHVSHTLYNT 144
M +E V V+HTLY+
Sbjct: 116 AMGQELGFDVVSKVAHTLYDV 136
>gi|189188250|ref|XP_001930464.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972070|gb|EDU39569.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 655
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 81/139 (58%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ L P++ DPH+ RVGPNRW++L
Sbjct: 7 IYWFRTDLRLHDSPALKAALDL-----NPACLYPIWTWDPHYVYRARVGPNRWQYLLDCQ 61
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL + L S+L+V++ P+ +FP +FK W I + +E D + YA++RD V ++A
Sbjct: 62 DDLSKSITKLNPKSKLFVIREAPQTLFPKLFKAWKITHMVFEKDTDAYARERDDKVLEIA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
++ V+V TLY+ +
Sbjct: 122 RKSGVEVVVKTGRTLYDPD 140
>gi|260787134|ref|XP_002588610.1| hypothetical protein BRAFLDRAFT_131753 [Branchiostoma floridae]
gi|229273775|gb|EEN44621.1| hypothetical protein BRAFLDRAFT_131753 [Branchiostoma floridae]
Length = 521
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 8/114 (7%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK--FMRVGPNRWRFLQQ 66
+HW RKG+R HDNP+LL A+ + P++++D F K +R G N+WRF+ +
Sbjct: 69 IHWFRKGLRFHDNPSLLHALRTSRH------VYPVFVMDLDFMKDFKIRSGANQWRFVIE 122
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
L DLD + RA G RL+V +G E F + F+ WNI LT + + E Y + RD
Sbjct: 123 CLQDLDTRLRAYGLRLFVARGNAEAFFAEHFRKWNITQLTHDVETEHYHRFRDA 176
>gi|210136298|gb|ACJ08741.1| cryptochrome [Neobellieria bullata]
Length = 542
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 80/136 (58%), Gaps = 6/136 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R G+RLHDNPALL AI+ K+E I L P++I D VG NR +FL SL D
Sbjct: 7 WFRHGLRLHDNPALLDAISDKDE---GIELLPIFIFDGESAGTQSVGYNRLKFLLDSLED 63
Query: 71 LDQKFRALG---SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
++ + R++ RLY+++G P ++F + + IK L +E D EP +RD V+++
Sbjct: 64 INNQLRSVSLSLGRLYIMKGNPVQIFRSLHEQRGIKKLCFEQDCEPIWNRRDNAVKNLCH 123
Query: 128 EYKVKVEQHVSHTLYN 143
+ + + +SHTL++
Sbjct: 124 DLGITCIERISHTLWD 139
>gi|302791750|ref|XP_002977641.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
gi|300154344|gb|EFJ20979.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
Length = 433
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 86/148 (58%), Gaps = 23/148 (15%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK---------FMRVGP 58
A+ W RKG+RLHDNP+L +A + +N+ P+++LDP F RVG
Sbjct: 2 ALLWFRKGLRLHDNPSLEAACH----GSRNVY--PVFVLDPWFLAPDPSAPSPGSARVGI 55
Query: 59 NRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR 118
NR +FL +SL DLD+ + GS+L +V G P + W I+ L +E+D EPYA R
Sbjct: 56 NRIQFLLESLQDLDRNLSSRGSKLLLVHGNPIQ--------WRIRKLCFEFDTEPYALDR 107
Query: 119 DGLVEDMAKEYKVKVEQHVSHTLYNTNL 146
D +++ AK+ +++ VSHT++N +L
Sbjct: 108 DAKIKEHAKDKGIELHCSVSHTIFNPDL 135
>gi|169617021|ref|XP_001801925.1| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15]
gi|160703316|gb|EAT80731.2| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15]
Length = 1229
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 79/132 (59%), Gaps = 7/132 (5%)
Query: 16 MRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKF 75
+RLHD+PAL +A++ K E L P++ DPH+ RVG NRW++L DL Q
Sbjct: 581 LRLHDSPALKAALDLKPE-----CLYPIWTWDPHYVYRARVGSNRWQYLIDCQNDLSQSI 635
Query: 76 RALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKV 133
L S+L++++ P+ +FP +FK W I L +E D + YA++RD V ++AKE V+V
Sbjct: 636 TKLNPKSKLFLIREAPQTLFPKLFKAWKITHLVFEKDTDAYARERDEKVMEIAKEAGVEV 695
Query: 134 EQHVSHTLYNTN 145
V TLY+ +
Sbjct: 696 VIKVGRTLYDPD 707
>gi|124107288|dbj|BAF45421.1| cryptochrome precursor [Dianemobius nigrofasciatus]
Length = 539
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 76/136 (55%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVH R G+RLHDNPALL A+ K + L P++I D VG NR +FL +S
Sbjct: 12 AVHRFRHGLRLHDNPALLDAV-----KDCDAFL-PIFIFDGESAGTKLVGYNRMKFLLES 65
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L D+D + + G LY+ G P VF I +T + L +E D EP + RD LV+ K
Sbjct: 66 LQDIDSQLKKYGGNLYLFHGTPLCVFQYISQTIGLHKLCFEQDCEPIWQHRDDLVKKFCK 125
Query: 128 EYKVKVEQHVSHTLYN 143
E +K + VSHTL+N
Sbjct: 126 ENGIKCIERVSHTLWN 141
>gi|45643655|gb|AAS72903.1| cryptochrome 4 [Passer domesticus]
Length = 359
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 76/133 (57%), Gaps = 7/133 (5%)
Query: 14 KGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF-RKFMRVGPNRWRFLQQSLADLD 72
KG+RLHDNP LL+A+ L P+YILD F M +G RW FL QSL DL
Sbjct: 1 KGLRLHDNPVLLAALESSEA------LYPVYILDRAFLTSSMHIGALRWNFLLQSLEDLH 54
Query: 73 QKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVK 132
+ LGS L V+QG+ E V D + WNI +T + ++EP+ K+ + ++ + E +
Sbjct: 55 KNLGQLGSCLLVIQGEYEIVLRDHIQKWNITQVTLDAEMEPFYKEMEANIQRLGVELGFE 114
Query: 133 VEQHVSHTLYNTN 145
V VSH+LYNT
Sbjct: 115 VFSLVSHSLYNTQ 127
>gi|284506737|dbj|BAI67362.1| cryptochrome [Bactrocera cucurbitae]
Length = 547
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 80/146 (54%), Gaps = 9/146 (6%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
T V W R G+RLHDNPALL AI+ +K + I L PL+I D VG NR F
Sbjct: 2 TKRANVLWFRHGLRLHDNPALLEAIS---DKSEGIALIPLFIFDGESAGTKTVGYNRMSF 58
Query: 64 LQQSLADLDQKFRAL------GSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKK 117
L SLAD+D++ +A+ +LY+ QG P VF + + + + + +E D EP +
Sbjct: 59 LLNSLADIDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYRLNKICFEQDCEPIWNR 118
Query: 118 RDGLVEDMAKEYKVKVEQHVSHTLYN 143
RD V + + ++ + VSHTL++
Sbjct: 119 RDDSVRSLCNDLDIEAVEKVSHTLWD 144
>gi|13022111|gb|AAK11644.1|AF333998_1 cryptochrome [Antheraea pernyi]
Length = 525
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 83/138 (60%), Gaps = 5/138 (3%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+V W R G+RLHDNP+L +A+ + +++ P+++ D VG NR R+L ++
Sbjct: 5 SVLWFRHGLRLHDNPSLHAAL-----EDRSVPFFPIFVFDGETAGTKLVGYNRMRYLLEA 59
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD +F+ G +L +++GKP +VF +++ + I+ L +E D EP + RD V+ +
Sbjct: 60 LEDLDNQFKKYGGKLIMLKGKPSDVFRRLWEEFGIRKLCFEQDCEPLWRARDDGVKSACR 119
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V ++VSHTL+ +
Sbjct: 120 EIGVACREYVSHTLWEPD 137
>gi|47215847|emb|CAG02310.1| unnamed protein product [Tetraodon nigroviridis]
Length = 606
Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 58/84 (69%)
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
RFL Q L DLD R L SRL+V++G+P VFP +FK W I LT+EYD EP+ K+RD
Sbjct: 20 RFLLQCLEDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAA 79
Query: 122 VEDMAKEYKVKVEQHVSHTLYNTN 145
++ +AKE V+V +SHTLY+ +
Sbjct: 80 IKKLAKEAGVEVIVKISHTLYDLD 103
>gi|121705010|ref|XP_001270768.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1]
gi|119398914|gb|EAW09342.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1]
Length = 613
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A+ + P++ DPH+ RVGPNRW+FL +
Sbjct: 6 LYWHRTDLRLHDSPALHAALALNPS-----IFIPIWTWDPHYVYRTRVGPNRWKFLLECQ 60
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
+DL + L RL+VV+ P+ V P ++K W I L +E D + YA+ RD V MA
Sbjct: 61 SDLSAAYTTLNPKQRLWVVREAPQSVLPKLWKKWQITHLVFEQDTDAYARDRDEAVLRMA 120
Query: 127 KEYKVKVEQHVSHTLYNTN 145
++ V+V + TL++ +
Sbjct: 121 RDAGVEVIVQMGRTLFDPD 139
>gi|395538375|ref|XP_003771158.1| PREDICTED: cryptochrome-1 [Sarcophilus harrisii]
Length = 671
Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 44/96 (45%), Positives = 61/96 (63%)
Query: 50 FRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEY 109
R+ P RFL Q L DLD R L SRL+V++G+P +VFP +FK WNI L+ EY
Sbjct: 147 LRELQTPQPEGHRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEY 206
Query: 110 DIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
D EP+ K+RD ++ +A E V+V +SHTLY+ +
Sbjct: 207 DSEPFGKERDAAIKKLASEAGVEVIVRISHTLYDLD 242
>gi|402076336|gb|EJT71759.1| cryptochrome-1 [Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 661
Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 80/139 (57%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ +L P++ DPH+ R G NRW+FL
Sbjct: 7 IYWFRTDLRLHDSPALQAALDLDPA-----VLWPIFTWDPHYVYRARGGLNRWQFLLDCQ 61
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL L S+L+V++ P+ +FP +FK W++ + +E D + YA++RD +V A
Sbjct: 62 NDLSASINKLNPKSKLFVLREAPQTLFPKLFKAWDVTHIVFEKDTDSYARRRDAVVTQAA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
++ V+V TL++++
Sbjct: 122 RDAGVRVITRCGRTLWDSD 140
>gi|346324524|gb|EGX94121.1| cryptochrome-2 [Cordyceps militaris CM01]
Length = 902
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ E +L P++ DPH+ R G NRW+FL
Sbjct: 7 IYWFRTDLRLHDSPALKAALDLDPE-----VLWPIFTWDPHYVYRARGGLNRWQFLLDCQ 61
Query: 69 ADLDQKFRALGSR--LYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL L S+ L++++ P+ VFP IFK W + L +E D + Y +RD +V+ A
Sbjct: 62 NDLSTSITKLNSKSKLFLLREAPQTVFPKIFKAWGVTHLVFEKDTDAYPLERDAIVKAAA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
K+ VKV TL++++
Sbjct: 122 KDAGVKVITCSGRTLWDSD 140
>gi|194744725|ref|XP_001954843.1| GF16541 [Drosophila ananassae]
gi|190627880|gb|EDV43404.1| GF16541 [Drosophila ananassae]
Length = 542
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 75/138 (54%), Gaps = 6/138 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R G+RLHDNPALL+A+ EK Q I L P++I D VG NR RFL SL
Sbjct: 8 VIWFRHGLRLHDNPALLAALA---EKDQGIALLPVFIFDGESAGTKNVGYNRMRFLLDSL 64
Query: 69 ADLDQKFRALG---SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
D+D + + L RL + +GKPE +F + + + + E D EP RD + +
Sbjct: 65 QDIDDQIQTLTDGRGRLLLFEGKPEHIFRRLHEQLRLHKICLEQDCEPIWNHRDETIRSL 124
Query: 126 AKEYKVKVEQHVSHTLYN 143
E ++ + VSHTL+N
Sbjct: 125 CHELGIEFVEKVSHTLWN 142
>gi|432090377|gb|ELK23803.1| Cryptochrome-2 [Myotis davidii]
Length = 539
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 60/90 (66%), Gaps = 3/90 (3%)
Query: 56 VGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYA 115
VGP FL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+
Sbjct: 15 VGPG---FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFG 71
Query: 116 KKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
K+RD + MAKE V+V SHTLY+ +
Sbjct: 72 KERDAAIMKMAKEAGVEVVTENSHTLYDLD 101
>gi|449482006|ref|XP_002196554.2| PREDICTED: cryptochrome-1 [Taeniopygia guttata]
Length = 715
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 58/85 (68%)
Query: 59 NRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR 118
N RFL Q L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+R
Sbjct: 145 NSCRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKER 204
Query: 119 DGLVEDMAKEYKVKVEQHVSHTLYN 143
D ++ +A E V+V +SHTLY+
Sbjct: 205 DAAIKKLASEAGVEVIVRISHTLYD 229
>gi|321453621|gb|EFX64839.1| hypothetical protein DAPPUDRAFT_65902 [Daphnia pulex]
Length = 92
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 62/89 (69%)
Query: 55 RVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPY 114
+VGPNRWRFL QSL DL+ + +GS L++++ P E+F FK WNIK LT+E +IEPY
Sbjct: 3 KVGPNRWRFLIQSLQDLNDNLKKIGSCLFLLKESPTEMFKKYFKEWNIKKLTFEVEIEPY 62
Query: 115 AKKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
AK +D ++ +A + V V VSHT+Y+
Sbjct: 63 AKTQDEEIKKLADHHSVPVVVKVSHTIYD 91
>gi|284506739|dbj|BAI67363.1| cryptochrome [Bactrocera cucurbitae]
Length = 547
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 79/146 (54%), Gaps = 9/146 (6%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
T V W G+RLHDNPALL AI+ +K + I L PL+I D VG NR F
Sbjct: 2 TKRANVLWFXHGLRLHDNPALLEAIS---DKSEGIALIPLFIFDGESAGTKTVGYNRMSF 58
Query: 64 LQQSLADLDQKFRAL------GSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKK 117
L SLAD+D++ +A+ +LY+ QG P VF + + + + + +E D EP +
Sbjct: 59 LLNSLADIDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYRLNKICFEQDCEPIWNR 118
Query: 118 RDGLVEDMAKEYKVKVEQHVSHTLYN 143
RD V + + ++ + VSHTL++
Sbjct: 119 RDDSVRSLCNDLDIEAVEKVSHTLWD 144
>gi|194673414|ref|XP_585942.4| PREDICTED: cryptochrome-2 [Bos taurus]
gi|296479702|tpg|DAA21817.1| TPA: cryptochrome 2-like [Bos taurus]
Length = 585
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 77/143 (53%), Gaps = 11/143 (7%)
Query: 3 GTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWR 62
G +VHW RKG+RLHDNPALL+A+ +G + + + +YILDP F VG NRWR
Sbjct: 16 GDGASSVHWFRKGLRLHDNPALLAAV-----RGAHCV-RCVYILDPWFAASSSVGINRWR 69
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
++ + L R G+ P W + LT+EYD EP+ K+RD +
Sbjct: 70 MMKNEATQSLLRVLTLQWRKLASGGQ----LP-CHMEWGVTRLTFEYDSEPFGKERDTAI 124
Query: 123 EDMAKEYKVKVEQHVSHTLYNTN 145
MAKE V+V SHTLY+ +
Sbjct: 125 MKMAKEAGVEVVTENSHTLYDLD 147
>gi|51944883|gb|AAU14170.1| cryptochrome [Bactrocera tryoni]
Length = 547
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 79/141 (56%), Gaps = 9/141 (6%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R G+RLHDNPALL AI+ +K + I L PL+I D VG NR FL SL
Sbjct: 7 VMWFRHGLRLHDNPALLEAIS---DKTEGIALIPLFIFDGESAGTKTVGYNRMSFLLNSL 63
Query: 69 ADLDQKFRAL------GSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
A++D++ +A+ +LY+ QG P VF + + + + + +E D EP +RD V
Sbjct: 64 AEIDKQLKAIRGASDIAGKLYLFQGNPTTVFRRLNEYYRLNKICFEQDCEPIWNRRDDSV 123
Query: 123 EDMAKEYKVKVEQHVSHTLYN 143
+ + ++ + VSHTL++
Sbjct: 124 RALCNDLDIEAVEKVSHTLWD 144
>gi|302417194|ref|XP_003006428.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102]
gi|261354030|gb|EEY16458.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102]
Length = 626
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A+ + +L P++ DPH+ R G NRW++L
Sbjct: 7 IYWFRTDLRLHDSPALTAALEL-----EPAVLWPVFTWDPHYVYRARGGLNRWQYLLDCQ 61
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL L S+L+V++ P+ +FP +FK W + L +E D + Y ++RDG+V A
Sbjct: 62 NDLSASITKLNPKSKLFVLREGPQTLFPKLFKAWKVTHLVFEKDTDSYGRERDGVVVAAA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
+E V+V TL++++
Sbjct: 122 REAGVEVIMRSGRTLWDSD 140
>gi|307826658|gb|ADN94464.1| cryptochrome [Helicoverpa armigera]
Length = 548
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 5/135 (3%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+V W R G+RLHDNP+L SA+ EKG +I D VG NR R+L ++
Sbjct: 5 SVLWFRHGLRLHDNPSLHSALE---EKGFPFFPI--FIFDGETAGTKLVGYNRMRYLLEA 59
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD +F+ G RL +++GKP VF +++ + I+ L +E D EP + RD V+ K
Sbjct: 60 LDDLDSQFKKFGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKSACK 119
Query: 128 EYKVKVEQHVSHTLY 142
E V +HVSHTL+
Sbjct: 120 EIGVVCREHVSHTLW 134
>gi|149725124|ref|XP_001490350.1| PREDICTED: cryptochrome-2-like [Equus caballus]
Length = 579
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%)
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD +
Sbjct: 64 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 123
Query: 123 EDMAKEYKVKVEQHVSHTLYNTN 145
MAKE V+V SHTLY+ +
Sbjct: 124 MKMAKEAGVEVVTENSHTLYDLD 146
>gi|371574660|gb|AEX49898.1| cryptochrome 1 [Helicoverpa armigera]
Length = 528
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 5/135 (3%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+V W R G+RLHDNP+L SA+ EKG +I D VG NR R+L ++
Sbjct: 5 SVLWFRHGLRLHDNPSLHSALE---EKGFPFFPI--FIFDGETAGTKLVGYNRMRYLLEA 59
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD +F+ G RL +++GKP VF +++ + I+ L +E D EP + RD V+ K
Sbjct: 60 LDDLDSQFKKFGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKSACK 119
Query: 128 EYKVKVEQHVSHTLY 142
E V +HVSHTL+
Sbjct: 120 EIGVVCREHVSHTLW 134
>gi|444707572|gb|ELW48837.1| Cryptochrome-2 [Tupaia chinensis]
Length = 577
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%)
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD +
Sbjct: 57 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 116
Query: 123 EDMAKEYKVKVEQHVSHTLYNTN 145
MAKE V+V SHTLY+ +
Sbjct: 117 MKMAKEAGVEVVTENSHTLYDLD 139
>gi|390470436|ref|XP_003734285.1| PREDICTED: cryptochrome-2 isoform 2 [Callithrix jacchus]
Length = 560
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%)
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD +
Sbjct: 40 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 99
Query: 123 EDMAKEYKVKVEQHVSHTLYNTN 145
MAKE V+V SHTLY+ +
Sbjct: 100 MKMAKEAGVEVVTENSHTLYDLD 122
>gi|355681095|gb|AER96735.1| cryptochrome 2 [Mustela putorius furo]
Length = 521
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%)
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD +
Sbjct: 1 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 60
Query: 123 EDMAKEYKVKVEQHVSHTLYNTN 145
MAKE V+V SHTLY+ +
Sbjct: 61 MKMAKEAGVEVVTENSHTLYDLD 83
>gi|326513908|dbj|BAJ92104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 546
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 78/144 (54%), Gaps = 17/144 (11%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPN---------RW 61
W RKG+R+HDNPAL +A + + P+++LDP + + P+ R
Sbjct: 18 WFRKGLRVHDNPALDAA------RRSAARVYPVFVLDPRYLRPDPAAPSPGSAHAGVARV 71
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPE--EVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
RFL +SL DLD + R LGSRL V++ + + + K WNI L +E D EPYA RD
Sbjct: 72 RFLLESLLDLDARLRCLGSRLLVLRARDDVSDAVCAALKDWNIGKLCFESDTEPYALARD 131
Query: 120 GLVEDMAKEYKVKVEQHVSHTLYN 143
V D A ++V VSHTL++
Sbjct: 132 KRVTDFAAASGIEVFSPVSHTLFD 155
>gi|188536103|ref|NP_001120929.1| cryptochrome-2 isoform 2 [Homo sapiens]
Length = 532
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%)
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD +
Sbjct: 12 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 71
Query: 123 EDMAKEYKVKVEQHVSHTLYNTN 145
MAKE V+V SHTLY+ +
Sbjct: 72 MKMAKEAGVEVVTENSHTLYDLD 94
>gi|426368089|ref|XP_004051045.1| PREDICTED: cryptochrome-2 isoform 2 [Gorilla gorilla gorilla]
Length = 532
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%)
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD +
Sbjct: 12 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 71
Query: 123 EDMAKEYKVKVEQHVSHTLYNTN 145
MAKE V+V SHTLY+ +
Sbjct: 72 MKMAKEAGVEVVTENSHTLYDLD 94
>gi|332836252|ref|XP_003313049.1| PREDICTED: cryptochrome-2 isoform 2 [Pan troglodytes]
gi|397473569|ref|XP_003808280.1| PREDICTED: cryptochrome-2 isoform 2 [Pan paniscus]
Length = 532
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%)
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD +
Sbjct: 12 FLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 71
Query: 123 EDMAKEYKVKVEQHVSHTLYNTN 145
MAKE V+V SHTLY+ +
Sbjct: 72 MKMAKEAGVEVVTENSHTLYDLD 94
>gi|324103935|gb|ADY17887.1| cryptochrome [Spodoptera exigua]
gi|324103937|gb|ADY17888.1| cryptochrome [Spodoptera exigua]
Length = 548
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 81/138 (58%), Gaps = 5/138 (3%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+V W R G+RLHDNP+L SA+ EKG +I D VG NR R+L ++
Sbjct: 5 SVLWFRHGLRLHDNPSLHSALE---EKGFPFFPI--FIFDGETAGTKVVGYNRMRYLLEA 59
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD +F+ G RL +++GKP VF +++ + I+ L +E D EP + RD V++ K
Sbjct: 60 LDDLDSQFKKHGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKNACK 119
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V ++HVSHTL+ +
Sbjct: 120 EIGVVCKEHVSHTLWEPD 137
>gi|406867153|gb|EKD20192.1| cryptochrome-2 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 650
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ E P++ DPH+ RVG NRW+FL
Sbjct: 7 IYWFRTDLRLHDSPALRAALDLNAE-----AFWPIWTWDPHYVYRARVGTNRWQFLIDCQ 61
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
D+ + L S+L++++ P+ +FP +FK W I L +E D + YA+ RD + A
Sbjct: 62 DDVSKSITKLNEKSKLFLMREAPQTLFPKLFKAWKITHLVFEKDTDAYARDRDAEIMRAA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
KE V+V TL++++
Sbjct: 122 KEAGVEVIVRSGRTLWDSD 140
>gi|443894766|dbj|GAC72113.1| deoxyribodipyrimidine photolyase [Pseudozyma antarctica T-34]
Length = 685
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 7/137 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ K L P++ DP++ RVG NR+RFL +S+
Sbjct: 8 LYWFRTDLRLHDSPALQAALDLKP-----AALFPVWCWDPNYVYKHRVGVNRFRFLLESM 62
Query: 69 ADLDQKFRAL--GSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
L ++ A S+L VV+G+P E+ P+++K W+I L E D Y ++RD L+ + A
Sbjct: 63 NALSERITATQSNSQLLVVRGEPTELLPELWKRWDITHLVIEKDPSAYGRRRDTLIREAA 122
Query: 127 KEYKVKVEQHVSHTLYN 143
K+ K++V H L++
Sbjct: 123 KKSKIEVVAVQGHHLFD 139
>gi|449276417|gb|EMC84949.1| Cryptochrome-1, partial [Columba livia]
Length = 570
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 57/82 (69%)
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
RFL Q L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD
Sbjct: 3 RFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAA 62
Query: 122 VEDMAKEYKVKVEQHVSHTLYN 143
++ +A E V+V +SHTLY+
Sbjct: 63 IKKLASEAGVEVIVRISHTLYD 84
>gi|392574712|gb|EIW67847.1| hypothetical protein TREMEDRAFT_21150, partial [Tremella
mesenterica DSM 1558]
Length = 548
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 6/140 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +R+ D+PAL +A++ + P++ DP + RVG NRW FL +S+
Sbjct: 3 LYWFRTDLRITDSPALTTALSLPDMNA----FYPIWCWDPSYIYGHRVGLNRWSFLLESM 58
Query: 69 ADLDQKFRALGSR--LYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL + +L R L+V +G PEEV P +++ W I + WE D YAK RD ++ +A
Sbjct: 59 KDLSDQLTSLNPRQKLHVCRGSPEEVLPVLWREWGITHIVWEKDANAYAKIRDECIKRLA 118
Query: 127 KEYKVKVEQHVSHTLYNTNL 146
KE V V L++ +L
Sbjct: 119 KEKGVVVVDVPGRHLFDPDL 138
>gi|257359518|gb|ACV53158.1| cryptochrome-like protein [Crassostrea gigas]
Length = 393
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 75/129 (58%), Gaps = 6/129 (4%)
Query: 15 GMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQK 74
G+RLHDNP+L+ ++ + P++I D G NR+RFL + L DLD+
Sbjct: 1 GLRLHDNPSLIDGLSECDR------FYPVFIFDGEVAGTKTAGYNRFRFLLECLQDLDKN 54
Query: 75 FRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVE 134
+A G+RLY QG+P ++ + + W + +T+E D EP ++RD LV ++ + V+
Sbjct: 55 LKAAGTRLYCFQGQPTDILERLIEEWGVTKVTFEADPEPIWQERDRLVRELLDKKNVQCV 114
Query: 135 QHVSHTLYN 143
+ VSHTL++
Sbjct: 115 EKVSHTLWD 123
>gi|452822749|gb|EME29765.1| deoxyribodipyrimidine photo-lyase [Galdieria sulphuraria]
Length = 545
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 74/139 (53%), Gaps = 6/139 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+ W RK +RLHDNP L A+ +E L PL+ILDP++ ++G R+RF+ +
Sbjct: 55 TIVWFRKSLRLHDNPTLQRAVQLASE------LFPLFILDPYYINPDKIGFQRFRFMLEC 108
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
+ DLD R S+L V+ G+P V + KTW L +E D + Y++ RD V K
Sbjct: 109 MKDLDHSLRKYQSKLLVIYGEPVNVLENCCKTWKCSYLCFEKDSDIYSRNRDEKVLQRMK 168
Query: 128 EYKVKVEQHVSHTLYNTNL 146
V+ HTLY+ ++
Sbjct: 169 GLGVQCFVESGHTLYDLDM 187
>gi|345326794|ref|XP_001508613.2| PREDICTED: cryptochrome-1-like [Ornithorhynchus anatinus]
Length = 721
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 57/82 (69%)
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
+RFL Q L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD
Sbjct: 157 FRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDA 216
Query: 121 LVEDMAKEYKVKVEQHVSHTLY 142
++ +A E V+V +SHTLY
Sbjct: 217 AIKKLASEAGVEVIVRISHTLY 238
>gi|343429136|emb|CBQ72710.1| related to Deoxyribodipyrimidine photolyase [Sporisorium reilianum
SRZ2]
Length = 684
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 81/137 (59%), Gaps = 7/137 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ K L P++ DP++ RVG NR+RFL +S+
Sbjct: 8 LYWFRTDLRLHDSPALQAALDLKP-----AALFPVWCWDPNYVYKHRVGINRFRFLLESM 62
Query: 69 ADLDQKFRALGSR--LYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
L + + S+ L VV+G+P E+ P+++K WNI L E D Y ++RD L+ + A
Sbjct: 63 TALSKNITSTQSKSQLLVVRGEPTELLPELWKRWNITHLVIEKDPSAYGRRRDRLIREAA 122
Query: 127 KEYKVKVEQHVSHTLYN 143
K+ V+V H LY+
Sbjct: 123 KKSNVEVVAVQGHHLYD 139
>gi|345570555|gb|EGX53376.1| hypothetical protein AOL_s00006g242 [Arthrobotrys oligospora ATCC
24927]
Length = 637
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ + + P++ DPH+ +VGPNRW+FL
Sbjct: 6 LYWFRTDLRLHDSPALKAALDLNPD-----VFYPVWTWDPHYVYHAKVGPNRWQFLLDCQ 60
Query: 69 ADLDQKFRALGS--RLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
+ + L S RL V++ P + P +FK WNI L +E D + YA+KRD V A
Sbjct: 61 SAVSDGLSQLNSKSRLLVLRESPLTILPKLFKAWNISHLVFEKDTDSYARKRDDEVLAKA 120
Query: 127 KEYKVKVEQHVSHTLYNTN 145
KE V+ TL++++
Sbjct: 121 KEAGVQCIVKYGRTLWDSD 139
>gi|170878123|gb|ACB38886.1| putative 6-4 photolyase [Cercospora zeae-maydis]
Length = 691
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ K E +L P++ D H+ RVG NRW+FL
Sbjct: 7 IYWFRTDLRLHDSPALKAALDLKPE-----VLYPIWCWDSHYVYRARVGVNRWQFLIDCQ 61
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
D+ + L S+L+V++ + P +FK W I L +E D + YA++RD V MA
Sbjct: 62 NDVSESITKLNQKSKLFVLREPAVTLLPKLFKAWKITHLVFEKDTDAYARERDEKVMHMA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
E VKV V TLY+ +
Sbjct: 122 GEAGVKVIVKVGRTLYDPD 140
>gi|302915963|ref|XP_003051792.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732731|gb|EEU46079.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 639
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 79/139 (56%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ +L P++ DPH+ R G NRW+FL
Sbjct: 7 IYWFRTDLRLHDSPALKAALDL-----DPAVLWPIFTWDPHYVYRARGGLNRWQFLLDCQ 61
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL + L S+L +++ P+ +FP +FK W + L +E D + YA++RD +V A
Sbjct: 62 NDLSKSITKLNPKSKLLLLREAPQTLFPKLFKAWKVTHLVFEKDTDSYARERDDVVTRAA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
KE V+V TL++++
Sbjct: 122 KEAGVEVIVRTGRTLWDSD 140
>gi|386762983|gb|AFJ22638.1| cryptochrome 1 [Agrotis ipsilon]
Length = 528
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 80/138 (57%), Gaps = 5/138 (3%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+V W R G+RLHDNP+L +A+ EKG +I D VG NR R+L ++
Sbjct: 5 SVLWFRHGLRLHDNPSLHAALE---EKGFPFFPI--FIFDGETAGTKLVGYNRMRYLLEA 59
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD +F+ G RL +++GKP VF +++ + I+ L +E D EP + RD V+ K
Sbjct: 60 LDDLDNQFKKYGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKAACK 119
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V ++HVSHTL+ +
Sbjct: 120 EIGVVCKEHVSHTLWEPD 137
>gi|358394356|gb|EHK43749.1| DNA photolyase [Trichoderma atroviride IMI 206040]
Length = 625
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ + E +L P++ DPH+ R G NRW+FL
Sbjct: 7 IYWFRTDLRLHDSPALQAALDLEPE-----VLWPIFTWDPHYVYKARGGVNRWQFLLDCQ 61
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL L S+L+V++ P+ +FP +FK W L +E D + Y + RD V A
Sbjct: 62 NDLSDSITKLNKNSKLFVLREGPQTLFPKLFKAWKPTHLVFEKDTDAYGRSRDEAVAKAA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
+E VKV TL++++
Sbjct: 122 QEAGVKVIIRSGRTLWDSD 140
>gi|219118654|ref|XP_002180095.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
1055/1]
gi|217408352|gb|EEC48286.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
1055/1]
Length = 550
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 18/149 (12%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF----RKFMRVGPNRW 61
+ A+HW R G+R HDNP LL A +K +++L P+Y++DP F R G R
Sbjct: 10 DVAIHWFRNGLRFHDNPCLLDAC----QKSESLL--PIYVVDPEFPFAQTAGCRAGTIRA 63
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG- 120
FL +S+ ++D+K R +GS+L VV GK EV P+I T K L +E + +++D
Sbjct: 64 NFLLESINEVDEKLRKMGSQLVVVLGKSHEVLPEIVATTQAKALFYEQEAAAPVREQDAE 123
Query: 121 -------LVEDMAKEYKVKVEQHVSHTLY 142
++ K Y+ K E + +HTL+
Sbjct: 124 TIQAIKNRLKRDGKNYECKFEAYATHTLH 152
>gi|389622365|ref|XP_003708836.1| cryptochrome-1 [Magnaporthe oryzae 70-15]
gi|351648365|gb|EHA56224.1| cryptochrome-1 [Magnaporthe oryzae 70-15]
gi|440473506|gb|ELQ42297.1| cryptochrome-1 [Magnaporthe oryzae Y34]
gi|440489726|gb|ELQ69353.1| cryptochrome-1 [Magnaporthe oryzae P131]
Length = 679
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ +L P++ DPH+ R G NRW++L
Sbjct: 7 IYWFRTDLRLHDSPALQAALDL-----DPAVLWPIFTWDPHYVYRSRGGLNRWQYLLDCQ 61
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL L S+L+V++ P+ +FP +FK W + L +E D + YA++RD +V+ A
Sbjct: 62 NDLSASITNLNPRSKLFVLREAPQSLFPKLFKAWKVTHLVFEKDTDAYARQRDEVVKKAA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
+ VKV TL++++
Sbjct: 122 QAAGVKVITRYGRTLWDSD 140
>gi|326920457|ref|XP_003206489.1| PREDICTED: cryptochrome-2 [Meleagris gallopavo]
Length = 540
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 57/83 (68%)
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD +
Sbjct: 21 FLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAI 80
Query: 123 EDMAKEYKVKVEQHVSHTLYNTN 145
+AKE V+V SHTLY+ +
Sbjct: 81 IKLAKEAGVEVVVENSHTLYDLD 103
>gi|46124775|ref|XP_386941.1| hypothetical protein FG06765.1 [Gibberella zeae PH-1]
Length = 685
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 79/139 (56%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ + P++ DPH+ R G NRW+FL
Sbjct: 59 IYWFRTDLRLHDSPALKAALDLDPS-----VFWPIFTWDPHYVYRARGGLNRWQFLLDCQ 113
Query: 69 ADLDQKFRALGS--RLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL + + S +L+V++ P+ +FP +FK W + + +E D + YA++RD +V A
Sbjct: 114 NDLSKSITKVNSNSKLFVLREAPQTLFPKLFKAWKVTHIVFEKDTDSYARERDSIVTQAA 173
Query: 127 KEYKVKVEQHVSHTLYNTN 145
K+ V+V TL++++
Sbjct: 174 KDAGVEVIIRSGRTLWDSD 192
>gi|389748358|gb|EIM89535.1| DNA photolyase [Stereum hirsutum FP-91666 SS1]
Length = 629
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 7/137 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +R+HD+PAL +A+ E L P++ DPH+ RVGPNRW+FL
Sbjct: 7 LYWFRTDLRVHDSPALHAALQLNPE-----CLYPVWCWDPHYVLQARVGPNRWQFLLDCQ 61
Query: 69 ADLDQKFRALGS--RLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL Q + L + RL V++ P+ + P + + W I L +E D + YA +RD VE
Sbjct: 62 NDLSQTLKRLNTKQRLLVLREAPQTLLPRLCRDWKITHLVFEEDTDSYALERDIDVEAKV 121
Query: 127 KEYKVKVEQHVSHTLYN 143
+E V+V + V TL++
Sbjct: 122 REAGVEVVKAVGRTLWD 138
>gi|340518659|gb|EGR48899.1| DNA photolyase [Trichoderma reesei QM6a]
Length = 628
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ + E L P++ DPH+ RVG NR++FL
Sbjct: 7 IYWFRTDLRLHDSPALQAALDLEPEA-----LWPIWTWDPHYVYKARVGVNRFQFLLDCQ 61
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL Q L S+L+V++ P+ +FP +F+ W L +E D + YA+ RD V A
Sbjct: 62 NDLSQSITKLNKKSKLFVLREGPQTLFPKLFEAWKPTHLVFEKDTDTYARTRDEAVVKAA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
KE V+V TL++++
Sbjct: 122 KEAGVEVITRSGRTLWDSD 140
>gi|342883710|gb|EGU84160.1| hypothetical protein FOXB_05337 [Fusarium oxysporum Fo5176]
Length = 637
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 79/139 (56%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ +L P++ DPH+ R G NRW+FL
Sbjct: 7 IYWFRTDLRLHDSPALKAALDL-----DPAVLWPIFTWDPHYVYRARGGLNRWQFLLDCQ 61
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL + + S+L+V++ P+ +FP +FK W + L +E D + Y ++RD +V A
Sbjct: 62 NDLSRSISQVNPKSKLFVLREAPQTLFPKLFKAWKVTHLVFEKDTDSYGRERDSVVVQAA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
K+ V+V TL++++
Sbjct: 122 KDAGVEVLVRSGRTLWDSD 140
>gi|408391364|gb|EKJ70743.1| hypothetical protein FPSE_09113 [Fusarium pseudograminearum CS3096]
Length = 637
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 79/139 (56%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ + P++ DPH+ R G NRW+FL
Sbjct: 7 IYWFRTDLRLHDSPALKAALDL-----DPAVFWPIFTWDPHYVYRARGGLNRWQFLLDCQ 61
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL + + S+L+V++ P+ +FP +FK W + + +E D + YA++RD +V A
Sbjct: 62 NDLSKSITKVNPNSKLFVLREAPQTLFPKLFKAWEVTHIVFEKDTDSYARERDSIVTQAA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
K+ V+V TL++++
Sbjct: 122 KDAGVEVIIRSGRTLWDSD 140
>gi|283476381|emb|CAY26038.1| chryptochrome 1 [Acyrthosiphon pisum]
Length = 553
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW R G+RLHDNPAL+ A N + L L+I D G N RFL +S
Sbjct: 4 AVHWFRNGLRLHDNPALIEAHNNAEK------LITLFIFDETTFNPKWYGYNPMRFLLES 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DL+ +G RLY++QG P +F I + + +T+E D + RD V+
Sbjct: 58 LIDLNNNLALVGGRLYILQGNPVNIFKMIKEKIGLHFITYEQDCAHLGRTRDEKVKSFCD 117
Query: 128 EYKVKVEQHVSHTLYN 143
E +K + VSHTL+N
Sbjct: 118 ENDIKCIETVSHTLWN 133
>gi|326912139|ref|XP_003202411.1| PREDICTED: cryptochrome-1 [Meleagris gallopavo]
Length = 611
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 58/84 (69%)
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
RFL Q L DLD R L SRL+V++G+P +VFP +FK W+I L+ EYD EP+ K+RD
Sbjct: 43 RFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWSIAKLSIEYDSEPFGKERDAA 102
Query: 122 VEDMAKEYKVKVEQHVSHTLYNTN 145
++ +A E V+V +SHTLY+ +
Sbjct: 103 IKKLASEAGVEVIVRISHTLYDLD 126
>gi|406855882|pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome
gi|406855883|pdb|4GU5|B Chain B, Structure Of Full-Length Drosophila Cryptochrome
Length = 539
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R G+RLHDNPALL+A+ +K Q I L P++I D VG NR RFL SL
Sbjct: 8 VIWFRHGLRLHDNPALLAALA---DKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSL 64
Query: 69 ADLDQKFRALG---SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
D+D + +A RL V +G+P +F + + + + E D EP +RD + +
Sbjct: 65 QDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSL 124
Query: 126 AKEYKVKVEQHVSHTLYNTNL 146
+E + + VSHTL++ L
Sbjct: 125 CRELNIDFVEKVSHTLWDPQL 145
>gi|24648152|ref|NP_732407.1| cryptochrome [Drosophila melanogaster]
gi|74960862|sp|O77059.1|CRY1_DROME RecName: Full=Cryptochrome-1; Short=DmCRY1; Short=dcry; AltName:
Full=Blue light photoreceptor
gi|3724370|dbj|BAA33787.1| blue-light receptor [Drosophila melanogaster]
gi|3983154|gb|AAC83828.1| cryptochrome [Drosophila melanogaster]
gi|7300494|gb|AAF55649.1| cryptochrome [Drosophila melanogaster]
gi|15291339|gb|AAK92938.1| GH16672p [Drosophila melanogaster]
gi|220945540|gb|ACL85313.1| cry-PA [synthetic construct]
gi|220955344|gb|ACL90215.1| cry-PA [synthetic construct]
Length = 542
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R G+RLHDNPALL+A+ +K Q I L P++I D VG NR RFL SL
Sbjct: 8 VIWFRHGLRLHDNPALLAALA---DKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSL 64
Query: 69 ADLDQKFRALG---SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
D+D + +A RL V +G+P +F + + + + E D EP +RD + +
Sbjct: 65 QDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSL 124
Query: 126 AKEYKVKVEQHVSHTLYNTNL 146
+E + + VSHTL++ L
Sbjct: 125 CRELNIDFVEKVSHTLWDPQL 145
>gi|3986298|dbj|BAA35000.1| blue light photoreceptor [Drosophila melanogaster]
Length = 542
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R G+RLHDNPALL+A+ +K Q I L P++I D VG NR RFL SL
Sbjct: 8 VIWFRHGLRLHDNPALLAALA---DKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSL 64
Query: 69 ADLDQKFRALG---SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
D+D + +A RL V +G+P +F + + + + E D EP +RD + +
Sbjct: 65 QDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSL 124
Query: 126 AKEYKVKVEQHVSHTLYNTNL 146
+E + + VSHTL++ L
Sbjct: 125 CRELNIDFVEKVSHTLWDPQL 145
>gi|293321543|emb|CAZ66367.1| cryptochrome [Suberites domuncula]
Length = 517
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 84/146 (57%), Gaps = 13/146 (8%)
Query: 5 PECAVHWIR-KGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFR-KFMRVGP--NR 60
P+ VHW R +RLHDNPA + A+ K ++I+DP F + GP N
Sbjct: 19 PDTTVHWFRLDALRLHDNPAFVDAVKTDGN------FKAVFIIDPWFNANYNNGGPQVNV 72
Query: 61 WRFLQQSLADLDQKF--RALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYD-IEPYAKK 117
WRFL ++L DLD + + +RL V+ G+P + P+++K WN+K +T++ + + K
Sbjct: 73 WRFLLEALHDLDSRLQKKPYCARLNVLYGQPTMILPELYKKWNVKKITFQASQVSSESMK 132
Query: 118 RDGLVEDMAKEYKVKVEQHVSHTLYN 143
DG+++ ++++ V+ + SHTLY+
Sbjct: 133 HDGIIKILSEQQNVQAVSYFSHTLYD 158
>gi|195157984|ref|XP_002019874.1| GL12637 [Drosophila persimilis]
gi|198455482|ref|XP_001360014.2| GA17677 [Drosophila pseudoobscura pseudoobscura]
gi|205696352|sp|Q293P8.2|CRY1_DROPS RecName: Full=Cryptochrome-1
gi|194116465|gb|EDW38508.1| GL12637 [Drosophila persimilis]
gi|198133263|gb|EAL29166.2| GA17677 [Drosophila pseudoobscura pseudoobscura]
Length = 540
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 6/141 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R G+RLHDNPALL+A+ EK Q I L P++I D VG NR RFL SL
Sbjct: 8 VLWFRHGLRLHDNPALLAALE---EKDQGIPLIPVFIFDGESAGTKSVGYNRMRFLLDSL 64
Query: 69 ADLDQKFRALG---SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
DLD++ ++ RL+V +G+P +F + + + + E D EP +RD +
Sbjct: 65 QDLDEQLQSATEGRGRLFVFEGEPTLIFRRLHEQVRLHKICAELDCEPIWNERDESARLL 124
Query: 126 AKEYKVKVEQHVSHTLYNTNL 146
+E ++ + VSHTL++ L
Sbjct: 125 CRELGIEYVEKVSHTLWDPRL 145
>gi|71009567|ref|XP_758291.1| hypothetical protein UM02144.1 [Ustilago maydis 521]
gi|46098033|gb|EAK83266.1| hypothetical protein UM02144.1 [Ustilago maydis 521]
Length = 684
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 7/137 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ K L P++ DP++ RVG NR+RFL +S+
Sbjct: 8 LYWFRTDLRLHDSPALQAALDLKP-----AALFPVWCWDPNYVYKHRVGVNRFRFLLESM 62
Query: 69 ADLDQKFRAL--GSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
L + + S+L VV+G+P E+ P+++K W+I L +E D Y ++RD L+ + A
Sbjct: 63 IALSKNITSTQSNSQLLVVRGEPTELLPELWKRWSITHLVFEKDPSAYGRRRDQLILEAA 122
Query: 127 KEYKVKVEQHVSHTLYN 143
++ VKV H LY+
Sbjct: 123 EKSNVKVVAVQGHHLYD 139
>gi|195353691|ref|XP_002043337.1| GM26830 [Drosophila sechellia]
gi|194127451|gb|EDW49494.1| GM26830 [Drosophila sechellia]
Length = 542
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R G+RLHDNPALL+A+ +K Q I + P++I D VG NR RFL SL
Sbjct: 8 VIWFRHGLRLHDNPALLAALA---DKDQGIAIIPVFIFDGESAGTKNVGYNRMRFLLDSL 64
Query: 69 ADLDQKFRALG---SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
D+D + +A RL V +G+P +F + + + + E D EP +RD + +
Sbjct: 65 QDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQLRLHRICIEQDCEPIWNERDESIRSL 124
Query: 126 AKEYKVKVEQHVSHTLYNTNL 146
+E + + VSHTL++ L
Sbjct: 125 CRELSIDFVEKVSHTLWDPQL 145
>gi|195569723|ref|XP_002102858.1| GD19278 [Drosophila simulans]
gi|194198785|gb|EDX12361.1| GD19278 [Drosophila simulans]
Length = 542
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R G+RLHDNPALL+A+ +K Q I L P++I D VG NR RFL SL
Sbjct: 8 VIWFRHGLRLHDNPALLAALA---DKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSL 64
Query: 69 ADLDQKFRALG---SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
D+D + +A RL V +G+P +F + + + + E D EP +RD + +
Sbjct: 65 QDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDENIRSL 124
Query: 126 AKEYKVKVEQHVSHTLYNTNL 146
+E + + VSHTL++ L
Sbjct: 125 CRELSIDFVEKVSHTLWDPQL 145
>gi|283806550|ref|NP_001164532.1| chryptochrome 1 [Acyrthosiphon pisum]
Length = 553
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 70/136 (51%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW R G+RLHDNPAL+ A N + L L+I D G N RFL S
Sbjct: 4 AVHWFRNGLRLHDNPALIEAHNNAEK------LITLFIFDETTFNPKWYGYNPMRFLLXS 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DL+ +G RLY++QG P +F I + + +T+E D + RD V+
Sbjct: 58 LIDLNNNLALVGGRLYILQGNPVNIFKMIKEKIGLHFITYEQDCAHLGRTRDEKVKSFCD 117
Query: 128 EYKVKVEQHVSHTLYN 143
E +K + VSHTL+N
Sbjct: 118 ENDIKCIETVSHTLWN 133
>gi|148467519|gb|ABQ65680.1| antennal cryptochrome 1 [Spodoptera littoralis]
Length = 348
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 79/135 (58%), Gaps = 5/135 (3%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+V W R +RLHDNP+L SA+ EKG +I D VG NR R+L ++
Sbjct: 5 SVLWFRHRLRLHDNPSLHSALE---EKGFPFFPI--FIFDGESAGTKVVGYNRMRYLLEA 59
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD +F+ G RL +++GKP VF +++ + I+ L +E D EP + RD V++ K
Sbjct: 60 LDDLDNQFKKHGGRLIMLKGKPNVVFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKNACK 119
Query: 128 EYKVKVEQHVSHTLY 142
E V ++HVSHTL+
Sbjct: 120 EIGVVCKEHVSHTLW 134
>gi|289741509|gb|ADD19502.1| deoxyribodipyrimidine photolyase/cryptochrome [Glossina morsitans
morsitans]
Length = 536
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 76/135 (56%), Gaps = 3/135 (2%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R G+RLHDNPALL A+ + EKG I L P++I D G NR RFL SL
Sbjct: 5 VLWFRHGLRLHDNPALLEALADR-EKG--IALVPIFIFDGESAGTKCTGYNRLRFLLDSL 61
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD +FR RLY QG P +F ++ + + I L E D EP +RD V+ + E
Sbjct: 62 RDLDDQFRCQRGRLYTFQGNPTTIFKELHECFGINKLCVEQDCEPIWNRRDNDVKVLCNE 121
Query: 129 YKVKVEQHVSHTLYN 143
+K + +SHTL+N
Sbjct: 122 LGIKWVEKISHTLWN 136
>gi|322698418|gb|EFY90188.1| cryptochrome-2 [Metarhizium acridum CQMa 102]
Length = 604
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 82/137 (59%), Gaps = 12/137 (8%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V+W R +RLHD+PAL +A++ + + +L P++ DP++ R G NRW+FL S+
Sbjct: 7 VYWFRTDLRLHDSPALKAALDLEPD-----VLWPIFTWDPYYVYRARGGTNRWQFL--SI 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
L+ K S+L+V++ P+ +FP + K W + L +E D + YA++RD +V AKE
Sbjct: 60 TKLNPK-----SKLFVLREAPQTLFPKLLKAWKVTHLVFEKDTDAYARQRDDVVAKAAKE 114
Query: 129 YKVKVEQHVSHTLYNTN 145
V+V TL++++
Sbjct: 115 AGVEVVIRSGRTLWDSD 131
>gi|195497880|ref|XP_002096288.1| GE25590 [Drosophila yakuba]
gi|194182389|gb|EDW96000.1| GE25590 [Drosophila yakuba]
Length = 542
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R G+RLHDNPALL+A+ +K Q I L P++I D VG NR RFL SL
Sbjct: 8 VIWFRHGLRLHDNPALLAALA---DKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSL 64
Query: 69 ADLDQKFRALG---SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
D+D + +A RL V +G+P +F + + + + E D EP RD + +
Sbjct: 65 QDIDDQLQAATDGRGRLLVFEGEPANIFRRLHEQVRLHRICIEQDCEPIWNDRDESIRFL 124
Query: 126 AKEYKVKVEQHVSHTLYNTNL 146
+E + + VSHTL++ L
Sbjct: 125 CRELNIDFVEKVSHTLWDPQL 145
>gi|405961052|gb|EKC26912.1| Cryptochrome-1 [Crassostrea gigas]
Length = 517
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
E VHW R G+R HDNP+L+ ++ + P++I D G NR+RFL
Sbjct: 7 EVVVHWFRHGLRFHDNPSLIDGLSECDR------FYPVFIFDGEVAGTKTAGYNRFRFLL 60
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
+ L DLD+ +A G+RLY QG+P ++ + + W + +T+E D EP ++RD L
Sbjct: 61 ECLQDLDKNLKAAGTRLYCFQGQPTDILERLIEEWGVTKVTFEADPEPIWQERDRL 116
>gi|195389935|ref|XP_002053627.1| GJ24000 [Drosophila virilis]
gi|194151713|gb|EDW67147.1| GJ24000 [Drosophila virilis]
Length = 539
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 6/138 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R G+RLHDNPALL+A++ +K Q I L P++I D VG NR RFL SL
Sbjct: 8 VIWFRHGLRLHDNPALLAALS---DKDQGIALIPIFIFDGESAGTKSVGYNRMRFLLDSL 64
Query: 69 ADLDQKF-RALGSR--LYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
D+D + +A R L + QG+P ++F + + + + E D EP +RD + +
Sbjct: 65 QDIDMQLQKATEGRGGLLMCQGQPTQIFRRLHERVRLHKICVEQDCEPIWNERDEATKSL 124
Query: 126 AKEYKVKVEQHVSHTLYN 143
+E ++ + VSHTL++
Sbjct: 125 CRELNIEYVEKVSHTLWD 142
>gi|301609141|ref|XP_002934138.1| PREDICTED: cryptochrome-2 [Xenopus (Silurana) tropicalis]
Length = 531
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 57/86 (66%)
Query: 60 RWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
R RFL QSL DLD R L SRL+VV+G+P +VFP +FK T+EYD EP+ K+RD
Sbjct: 29 RGRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKECKFSTPTFEYDSEPFGKERD 88
Query: 120 GLVEDMAKEYKVKVEQHVSHTLYNTN 145
++ +AKE V+V SHTLY+ +
Sbjct: 89 AVIMKLAKEAGVEVIVENSHTLYDLD 114
>gi|325180456|emb|CCA14862.1| cryptochrome putative [Albugo laibachii Nc14]
Length = 639
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 4/140 (2%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKG--QNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
A+ W R+ +RLHDN AL A+ + + + + L PLYI+ H K + G NR++FL
Sbjct: 60 AIMWFRRDLRLHDNHALHRALKFVESQNDTETVQLIPLYII--HRPKRLLCGVNRFQFLL 117
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+ L + A GSRL + +G+ +VF I W I + ++ IEP+A RD V ++
Sbjct: 118 ESVGTLAEAIAARGSRLIIARGEGIDVFRRILPAWKITHIFFDQAIEPFAIARDHQVREL 177
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
A V VE +TLY+ +
Sbjct: 178 AASLNVHVETTHGYTLYDQD 197
>gi|116256289|gb|ABJ90474.1| cryptochrome 1 [Equus caballus]
Length = 378
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 56/82 (68%)
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L Q L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++
Sbjct: 2 LLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIK 61
Query: 124 DMAKEYKVKVEQHVSHTLYNTN 145
+A E V+V +SHTLY+ +
Sbjct: 62 KLATEAGVEVIVRISHTLYDLD 83
>gi|406507545|gb|AFS34616.1| cryptochrome 1, partial [Clunio marinus]
Length = 378
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 86/137 (62%), Gaps = 4/137 (2%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+V W R+G+RLHDNPAL+ AIN + + Q + P++I D VG NR +FL +S
Sbjct: 4 SVLWFRQGLRLHDNPALIEAINTDDGRRQ-VTFYPVFIFDGESAGTKDVGYNRMKFLLES 62
Query: 68 LADLDQKFRALGS-RLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
L DLD++F+ LG+ L++ QGKP E+F ++ I + +E D E +RD ++ ++
Sbjct: 63 LLDLDEQFKQLGAPGLFIFQGKPTEIFQNLHDNIGINKICFEQDCE--YNERDNEIKYLS 120
Query: 127 KEYKVKVEQHVSHTLYN 143
+E ++V + VSHTL+N
Sbjct: 121 RELGIEVVEKVSHTLWN 137
>gi|194900020|ref|XP_001979555.1| GG23184 [Drosophila erecta]
gi|190651258|gb|EDV48513.1| GG23184 [Drosophila erecta]
Length = 542
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R G+RLHDNPALL+A+ +K Q + L P++I D VG NR RFL SL
Sbjct: 8 VIWFRHGLRLHDNPALLAALA---DKDQGVALIPVFIFDGESAGTKNVGYNRMRFLLDSL 64
Query: 69 ADLDQKFRALG---SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
D+D + + RL V +G+P +F + + + L E D EP RD + +
Sbjct: 65 QDIDDQLQEATDGRGRLLVFEGEPAFIFRRLHEQVRLHRLCIEQDCEPIWNHRDETIRAL 124
Query: 126 AKEYKVKVEQHVSHTLYNTNL 146
+E + + VSHTL++ L
Sbjct: 125 CRELGIDFVEKVSHTLWDPQL 145
>gi|195055524|ref|XP_001994667.1| GH17366 [Drosophila grimshawi]
gi|193892430|gb|EDV91296.1| GH17366 [Drosophila grimshawi]
Length = 539
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 6/138 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R G+RLHDNPALLSA+ +K I L P++I D VG NR RFL SL
Sbjct: 8 VIWFRHGLRLHDNPALLSALA---DKDYGIALIPIFIFDGESAGTKSVGYNRMRFLLDSL 64
Query: 69 ADLDQKFRALG---SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
D+D++ + + L + +G+P ++F + + + E D EP +RD + ++
Sbjct: 65 DDIDKQLKEVSDGQGGLLICEGQPTDIFRRLHDQVRLHKICVELDCEPIWNERDEAINNL 124
Query: 126 AKEYKVKVEQHVSHTLYN 143
+E ++ + VSHTL++
Sbjct: 125 CRELGIEYVEMVSHTLWD 142
>gi|400602563|gb|EJP70165.1| DNA photolyase [Beauveria bassiana ARSEF 2860]
Length = 623
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ E +L P++ DPH+ +R G NRW+FL
Sbjct: 7 IYWFRTDLRLHDSPALKAALDLDPE-----ILWPIFTWDPHYVYRVRGGLNRWQFLLDCQ 61
Query: 69 ADLDQKFRALGSR--LYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL L S+ L++++ P+ V P IFK W + L +E D + Y ++RD VE A
Sbjct: 62 NDLSASITKLNSKSKLFLLREAPQTVLPKIFKAWGVTHLVFEKDTDSYPRERDAAVEAAA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
K VKV TL++++
Sbjct: 122 KTAGVKVVTRSGRTLWDSD 140
>gi|404313303|gb|AFR54426.1| cryptochrome 1 [Mythimna separata]
Length = 528
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 5/138 (3%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+V W R G+RLHDNP+L A+ EKG +I D VG NR R+L ++
Sbjct: 5 SVLWFRHGLRLHDNPSLHCALE---EKGFPFFPI--FIFDGETAGTKLVGYNRMRYLLEA 59
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD + + G RL +++GKP VF +++ + I+ L +E D EP + RD V+ K
Sbjct: 60 LEDLDSQLKKHGGRLIMLKGKPNVVFRRLWEEFGIRRLCFEQDCEPVWRARDDSVKAACK 119
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V +++VSHTL+ +
Sbjct: 120 EIGVVCKENVSHTLWEPD 137
>gi|443692783|gb|ELT94302.1| hypothetical protein CAPTEDRAFT_40617, partial [Capitella teleta]
Length = 140
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 57/83 (68%)
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
+RFL QSL DLD + R L SRL+V++G+P ++FP +F+ W+I L +E D EP+ K+RD
Sbjct: 1 YRFLLQSLEDLDSRLRKLNSRLFVIRGQPTDIFPKLFQKWDISALAFEEDPEPFGKERDS 60
Query: 121 LVEDMAKEYKVKVEQHVSHTLYN 143
V +++ ++V SHTL+N
Sbjct: 61 AVCTKSQDAGIEVIIKTSHTLFN 83
>gi|195107460|ref|XP_001998330.1| GI23904 [Drosophila mojavensis]
gi|193914924|gb|EDW13791.1| GI23904 [Drosophila mojavensis]
Length = 539
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 6/138 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R G+RLHDNPA+L+A++ K+ Q + L P++I D VG NR RFL SL
Sbjct: 8 VIWFRHGLRLHDNPAMLAALSNKD---QGVALIPIFIFDGESAGTKNVGYNRMRFLLDSL 64
Query: 69 ADLDQKFR-ALGSR--LYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
D+D++ + A R L + +G+P +F + + + + E D EP +RD V+ +
Sbjct: 65 QDIDRQLQEATEGRGGLLICEGQPVHIFRRLHEHVGLHKICVEQDCEPIWNERDEAVKSL 124
Query: 126 AKEYKVKVEQHVSHTLYN 143
+E ++ + VSHTL++
Sbjct: 125 CRELGIEYVEKVSHTLWD 142
>gi|425767796|gb|EKV06352.1| DNA photolyase, putative [Penicillium digitatum Pd1]
gi|425769478|gb|EKV07970.1| DNA photolyase, putative [Penicillium digitatum PHI26]
Length = 604
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 80/145 (55%), Gaps = 7/145 (4%)
Query: 3 GTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWR 62
G+ ++W R +RLHD+PAL +A+ + P++ D H+ RVGPNRW+
Sbjct: 6 GSNPVVLYWHRTDLRLHDSPALHAALALNPS-----VFIPIWTWDQHYVYKARVGPNRWK 60
Query: 63 FLQQSLADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
FL + +DL + L +L+VV+ P+ V P +++ W + L +E D + YA+ RD
Sbjct: 61 FLLECQSDLSTAYTKLNPKQKLHVVREGPQTVLPKLWEHWGVTHLVFEKDTDAYARDRDN 120
Query: 121 LVEDMAKEYKVKVEQHVSHTLYNTN 145
V +A++ V+V + TL++ +
Sbjct: 121 AVMRLAQKAGVEVIVKMGRTLFDPD 145
>gi|453088843|gb|EMF16883.1| FAD_binding_7-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 637
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ + E +L P++ D H+ RVG NRW+FL
Sbjct: 7 LYWFRTDLRLHDSPALKAALDLQPE-----VLYPIWCWDSHYVYRARVGVNRWQFLIDCQ 61
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
D+ + L S+L+V++ + P +FK W I L +E D + YA++RD V +A
Sbjct: 62 NDVSKSITKLNKKSKLFVLREPAVTLLPKLFKKWKITHLVFEKDTDAYARERDEQVVRVA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
E V+V V TLY+ +
Sbjct: 122 GEAGVEVIVKVGRTLYDPD 140
>gi|398412077|ref|XP_003857369.1| hypothetical protein MYCGRDRAFT_66122 [Zymoseptoria tritici IPO323]
gi|339477254|gb|EGP92345.1| hypothetical protein MYCGRDRAFT_66122 [Zymoseptoria tritici IPO323]
Length = 670
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL SA++ E P++ D H+ RVG NRW+FL +
Sbjct: 7 LYWFRTDLRLHDSPALKSALDLNPE-----AFYPIWCWDSHYVYHARVGVNRWQFLIDCM 61
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
D+ Q + S+L+V++ + P +FK W I L +E D + Y ++RD V + A
Sbjct: 62 NDVSQSITKINKKSQLFVLREPAVTLLPKLFKAWKISHLVFEKDTDAYGRQRDEQVLESA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
+E V+V TL++++
Sbjct: 122 REAGVEVITKFGRTLWDSD 140
>gi|310791567|gb|EFQ27094.1| DNA photolyase [Glomerella graminicola M1.001]
Length = 628
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A+ +L P++ DPH+ R G NRW+FL
Sbjct: 8 IYWFRTDLRLHDSPALAAALAL-----DPAVLWPIFTWDPHYVYRARGGLNRWQFLLDCQ 62
Query: 69 ADLDQKFRALGSR--LYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL + L SR L+V++ P+ +FP +FK W + L +E D + YA++RD +V A
Sbjct: 63 NDLSESITKLNSRSKLFVLREGPQTLFPKLFKAWKVTHLVFEKDTDAYARERDEVVMRAA 122
Query: 127 KEYKVKVEQHVSHTLYNTN 145
E V+V TL++++
Sbjct: 123 SEAGVEVIVKSGRTLWDSD 141
>gi|340376095|ref|XP_003386569.1| PREDICTED: cryptochrome-2-like [Amphimedon queenslandica]
Length = 550
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 78/138 (56%), Gaps = 7/138 (5%)
Query: 8 AVHWIRK-GMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKF-MRVGPNRWRFLQ 65
++HW R +RLHDN AL++++ + + +++LDP F + + G NR +FL
Sbjct: 61 SLHWFRSFSLRLHDNSALMASLLRPQTQ-----FRAVFVLDPWFTETDKKFGANRLKFLL 115
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+ L DL + ALG +LYV QG+ V + + W + L+++ EP +K + + +M
Sbjct: 116 ECLHDLSNQLEALGLKLYVAQGQTTAVLAGLCQEWGVTHLSYQKSQEPRSKVEERTISEM 175
Query: 126 AKEYKVKVEQHVSHTLYN 143
A ++VE+ +HTLY+
Sbjct: 176 ASMMNIEVEEFHNHTLYS 193
>gi|301097563|ref|XP_002897876.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262106624|gb|EEY64676.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 656
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 81/142 (57%), Gaps = 11/142 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEK-----GQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
W R+ +RLHDN A+ +A+++ ++ G+ ++ PLYI+ H K M G NR++FL
Sbjct: 94 WFRRDLRLHDNLAISAALDWIKQEEEKIPGRKVVFIPLYIV--HRPKIMLCGVNRFQFLL 151
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S++DL A GSRL V +G +V + W I L ++ EP+A RD +
Sbjct: 152 ESVSDLADALAARGSRLVVARGDGVQVLRRLLPAWRISHLFFDAASEPFAIDRDNRAVAL 211
Query: 126 AKEYKVKVEQHVSH--TLYNTN 145
A++ + VE HV+H TLY+ +
Sbjct: 212 ARQ--LGVETHVTHGYTLYDLD 231
>gi|358385715|gb|EHK23311.1| putative photolyase class 1 [Trichoderma virens Gv29-8]
Length = 627
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ + E +L P++ DPH+ R G NRW+FL
Sbjct: 7 IYWFRTDLRLHDSPALQAALDLEPE-----VLWPIFTWDPHYVYKARGGVNRWQFLLDCQ 61
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL Q L S+L+V++ P+ + P +FK W L +E D + YA+ RD V A
Sbjct: 62 NDLSQSITKLNKNSKLFVLREGPQTLLPKLFKAWKPTHLVFEKDTDAYARSRDEAVAKAA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
K V+V TL++++
Sbjct: 122 KAAGVEVIIRPGRTLWDSD 140
>gi|378728105|gb|EHY54564.1| cryptochrome [Exophiala dermatitidis NIH/UT8656]
Length = 987
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/130 (36%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF--RKFMRVGPNRWRFLQQ 66
++W R +RLHD+P L +A++ L PL+I D H+ R NRWRFL +
Sbjct: 53 IYWFRTDLRLHDSPGLTTALSLDPSA-----LIPLWIWDSHYVERYGGSASTNRWRFLLE 107
Query: 67 SLADLDQKFRALG--SRLYVVQG-KPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
S+ADL L +L+VV+G P ++ P + + W I +L +E D + YA+ RD V
Sbjct: 108 SMADLSASLARLNPNQKLHVVRGGPPAKIIPVLLRKWKINVLVFEKDTDAYARARDEQVT 167
Query: 124 DMAKEYKVKV 133
+A+ VKV
Sbjct: 168 QLAEAMGVKV 177
>gi|403177785|ref|XP_003336224.2| hypothetical protein PGTG_17805 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173202|gb|EFP91805.2| hypothetical protein PGTG_17805 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 731
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 80/145 (55%), Gaps = 8/145 (5%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR 60
M P ++W R +RLHD+PAL+ A+ E G + P++ DP++ VGPNR
Sbjct: 93 MSAKPIKLLYWFRTDLRLHDSPALMKAL----ELGP-VEFYPVWCWDPYYVYNTPVGPNR 147
Query: 61 WRFLQQSLADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEP-YAKK 117
W+FL S+ DL + + S+L+V++G+P P I++ W I L +E D + +++
Sbjct: 148 WQFLLDSMNDLSKSISRINGRSKLFVIRGEPSITLPYIWRQWGITHLAFEEDDDKRHSQP 207
Query: 118 RDGLVEDMAKEYKVKVEQHVSHTLY 142
RD + AK+ V++ HTLY
Sbjct: 208 RDQSIIKAAKDAGVEILTSPGHTLY 232
>gi|313234987|emb|CBY24933.1| unnamed protein product [Oikopleura dioica]
Length = 374
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 7/139 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFR-KFMRVGPNRWRFLQQ 66
VHW RKG+RLHDN AL A+ ++ P+YILD ++ + + + RFL +
Sbjct: 7 TVHWFRKGLRLHDNEALYHAVTTSQ------VVFPIYILDVDWQTEKEKFSALKTRFLIE 60
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
L DLD+ + G+RLYV+ G V K I +TW D E + ++RD + +
Sbjct: 61 CLRDLDEGLKKCGTRLYVLTGDATTVIKKFCKENEITQMTWMKDAEIFYRERDEEITKVV 120
Query: 127 KEYKVKVEQHVSHTLYNTN 145
++K + + HTLY+ +
Sbjct: 121 HRMEIKTKSFLGHTLYDQD 139
>gi|449304579|gb|EMD00586.1| hypothetical protein BAUCODRAFT_175264 [Baudoinia compniacensis
UAMH 10762]
Length = 647
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 79/139 (56%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ + E +L P++ DPH+ RVG NRW+FL +
Sbjct: 7 LYWFRTDLRLHDSPALKAALDLQPE-----VLYPIWCWDPHYVYHARVGNNRWQFLIDCM 61
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
D+ + L S+L+V++ + +F W I + +E D + YA++RD V + A
Sbjct: 62 NDVSRSITNLNPNSKLFVLREPAVTLLSKLFTAWRITHIVFEKDTDAYARERDKQVVESA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
++ V+V TL++++
Sbjct: 122 RKAGVEVIVKSGRTLWDSD 140
>gi|452848446|gb|EME50378.1| hypothetical protein DOTSEDRAFT_145202, partial [Dothistroma
septosporum NZE10]
Length = 640
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ K + +L P++ D H+ RVG NR++FL
Sbjct: 7 IYWFRTDLRLHDSPALKAALDLKPD-----VLFPIWCWDSHYVYRARVGVNRFQFLIDCQ 61
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL + L S+L+V++ + P +FK W I L +E D + YAK+RD V MA
Sbjct: 62 NDLSKSITKLNKKSKLFVMREPAVTLLPKLFKEWKITHLVFEKDTDAYAKERDQQVVKMA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
++ V+V TL++ +
Sbjct: 122 EDAGVEVIVKTGRTLWDPD 140
>gi|452989588|gb|EME89343.1| hypothetical protein MYCFIDRAFT_201892 [Pseudocercospora fijiensis
CIRAD86]
Length = 655
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL +A++ + E +L P++ D H+ RVG NR++FL
Sbjct: 7 LYWFRTDLRLHDSPALKAALDLQPE-----VLYPIWCWDSHYVYRARVGANRFQFLIDCQ 61
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
D+ + L S+L+V++ + P +FK W I L +E D + YA++RD V + A
Sbjct: 62 NDVSKSITKLNKKSKLFVLREPAVTLLPKLFKAWKISHLVFEKDTDAYARERDAKVTEAA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
K+ V+V TL++ +
Sbjct: 122 KKAGVEVIIKNGRTLFDPD 140
>gi|313212920|emb|CBY36823.1| unnamed protein product [Oikopleura dioica]
Length = 476
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 7/139 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFR-KFMRVGPNRWRFLQQ 66
VHW RKG+RLHDN AL A+ ++ P+YILD ++ + + + RFL +
Sbjct: 7 TVHWFRKGLRLHDNEALYHAVTTSQ------VVFPIYILDVDWQTEKEKFSALKTRFLIE 60
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
L DLD+ + G+RLYV+ G V K I +TW D E + ++RD + +
Sbjct: 61 CLRDLDEGLKKYGTRLYVLTGDATTVIKKFCKENEITQMTWMKDAEIFYRERDEEITKVV 120
Query: 127 KEYKVKVEQHVSHTLYNTN 145
++K + + HTLY+ +
Sbjct: 121 HRMEIKTKSFLGHTLYDQD 139
>gi|340376121|ref|XP_003386582.1| PREDICTED: cryptochrome-2-like [Amphimedon queenslandica]
Length = 544
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 72/145 (49%), Gaps = 12/145 (8%)
Query: 5 PECAVHWIR-KGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGP--NRW 61
P +HW R +RL DNPA A++ LK + ILDP F + GP N W
Sbjct: 44 PPTVLHWFRLDSLRLSDNPAFHHAVSSGKR------LKAVVILDPWFNSNNKSGPSANVW 97
Query: 62 RFLQQSLADLDQKF--RALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPY-AKKR 118
RFL +SL DLD + R +RL + G+P V +F WN+ LT++ +KK
Sbjct: 98 RFLLESLHDLDSRLQKRPYNTRLNIYLGQPTVVLSALFHKWNVSELTFQASQTSLESKKH 157
Query: 119 DGLVEDMAKEYKVKVEQHVSHTLYN 143
D L++ A VK SHTLYN
Sbjct: 158 DELIKFAADSQNVKTTSFYSHTLYN 182
>gi|348680511|gb|EGZ20327.1| hypothetical protein PHYSODRAFT_492233 [Phytophthora sojae]
Length = 650
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEK--------GQNILLKPLYILDPHFRKFMRVGPNRWR 62
W R+ +RLHDN AL A+ ++ G +L PLYI+ H K M G NR++
Sbjct: 85 WFRRDLRLHDNLALSEALQLVKQQEGEMAQTTGHKVLFIPLYIV--HRPKIMLCGVNRFQ 142
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
F+ +S++DL A GSRL V +G +V + W I L ++ EP+A RD
Sbjct: 143 FMLESVSDLADALAARGSRLVVARGDGLQVLRRLLPAWRITHLFFDAASEPFAIARDNRA 202
Query: 123 EDMAKEYKVKVEQHVSH--TLYNTN 145
D+A+ + ++ HV+H TLY+ +
Sbjct: 203 VDLARH--LGIQTHVTHGYTLYDLD 225
>gi|321466446|gb|EFX77441.1| CRY-D [Daphnia pulex]
Length = 525
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 75/135 (55%), Gaps = 6/135 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R+G+R+HDNPALLSA+ + + + DP ++ + G FL + L
Sbjct: 3 VLWFRRGLRIHDNPALLSALENSKDFIALFVFDTTF-QDPGYKPYHMNG-----FLLECL 56
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DL++ ++G++L+V QG P EVF + I L + D EP +RD +++ E
Sbjct: 57 HDLNESLESVGTKLHVFQGCPLEVFRHLHNIKPINKLCFIQDCEPIFHERDIAAKNLCSE 116
Query: 129 YKVKVEQHVSHTLYN 143
++V +HV+HTL++
Sbjct: 117 LDIEVYEHVAHTLWD 131
>gi|301121222|ref|XP_002908338.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262103369|gb|EEY61421.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 568
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 2/133 (1%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RLHDN AL +A+ + E ++ L LYI+ H + MR G NR++F+ +S+AD
Sbjct: 6 WFRRDLRLHDNLALNAALQHIEEAKSDVELISLYII--HRPQIMRCGANRFQFVLESVAD 63
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L GS+L V +G +V + W+I + ++ EPYA +RD +AK
Sbjct: 64 LSGALAERGSKLVVAKGDSIQVLRRVLPAWDITHMFFDGVCEPYAVERDDRALALAKSLG 123
Query: 131 VKVEQHVSHTLYN 143
V+ + LY+
Sbjct: 124 VQTHVTKGYNLYD 136
>gi|301097555|ref|XP_002897872.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262106620|gb|EEY64672.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 694
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAI----NYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
A+ W R+ +R+HDN AL +A+ + + + L P+YIL H K R GP R++F
Sbjct: 99 AIVWFRRDLRIHDNLALDAAMRAQMQLQKAGDEEMALLPIYIL--HRPKRQRCGPVRFQF 156
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L +++ DL + L RL V+ G EEV + W + L +E + YA RD V
Sbjct: 157 LLEAIEDLARSIAKLDGRLLVLSGDAEEVLRTVIAAWGVTDLFFEAGVAHYAVDRDNRVR 216
Query: 124 DMAKEYKVKVEQHVSHTLYN 143
+AK V V TLYN
Sbjct: 217 AIAKSLDVNVTTIRGVTLYN 236
>gi|322782527|gb|EFZ10476.1| hypothetical protein SINV_15449 [Solenopsis invicta]
Length = 81
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 50/81 (61%)
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
RFL Q L DLD R L SRL+V++G+P + P +FK W LT+E D EP+ + RD
Sbjct: 1 RFLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHN 60
Query: 122 VEDMAKEYKVKVEQHVSHTLY 142
+ + +E + V Q +SHTLY
Sbjct: 61 ISALCEELGISVVQRISHTLY 81
>gi|148657549|ref|YP_001277754.1| deoxyribodipyrimidine photolyase [Roseiflexus sp. RS-1]
gi|148569659|gb|ABQ91804.1| Deoxyribodipyrimidine photo-lyase type I [Roseiflexus sp. RS-1]
Length = 491
Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+HW R+ +RL DNPAL A G ++ PL+ILD R G R F+ +L
Sbjct: 4 IHWFRRDLRLRDNPALSGA---AARSGGRVI--PLFILDDAILHAPRTGMARVAFMIAAL 58
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD RA GSRL V +G+P +V D+ ++W D P+A++RD +E M ++
Sbjct: 59 RDLDASLRARGSRLVVRRGRPSDVLRDLVGATGAVGVSWNRDYTPFARQRDQHIEAMLRD 118
Query: 129 YKV 131
V
Sbjct: 119 LNV 121
>gi|313228844|emb|CBY17995.1| unnamed protein product [Oikopleura dioica]
Length = 525
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF-RKFMRVGPNRWRFLQQ 66
+HW RKG+RLHDN LL+AI + +Y LD + R R+G NR RFL +
Sbjct: 10 TLHWFRKGLRLHDNRPLLAAIRSSEA------VYCVYCLDLEWMRANERIGNNRIRFLLE 63
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SL DLD+ R +G+RL+V++G + + I +T+ D E + ++ + + +
Sbjct: 64 SLTDLDENLRKIGTRLFVLRGNARTAIKTFCREYEITQMTYMRDAEVFYRQLEAEILEEV 123
Query: 127 KEYKVKVEQHVSHTLYN 143
++ HTLY+
Sbjct: 124 NRREIVTRSDHGHTLYD 140
>gi|170079382|ref|YP_001736020.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
gi|169887051|gb|ACB00765.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
Length = 477
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
E +HW R+ +RL DN AL A + Q+ + ++ LDP + V P R ++L
Sbjct: 3 ELVLHWHRRDLRLQDNVALAEA------RQQSAKVVGIFCLDPAILEKEDVAPARVKYLL 56
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
LA+L + ++ GS+L + QG P EV P + ++ + + W D+EPYA++RD +
Sbjct: 57 ACLAELAENYQKAGSQLLIFQGNPLEVLPKVAESLKVHTVYWNLDVEPYAQQRDHQMAIA 116
Query: 126 AKEYKVKVE 134
++ K+E
Sbjct: 117 LRQVGAKIE 125
>gi|403373370|gb|EJY86604.1| Cryptochrome 5 [Oxytricha trifallax]
Length = 570
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 77/135 (57%), Gaps = 10/135 (7%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-RVGPNRWRFLQQS 67
++W RK +RLHDN L+ + + N+L P++ILDP F K +VG NR +FL S
Sbjct: 10 IYWFRKALRLHDNKGLIDS----SSTCTNLL--PIFILDPWFVKNEEKVGTNRMKFLIDS 63
Query: 68 LADLDQKF-RALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
L DL++ + S L ++ G+P E+F + + L +E D EPYA+ RD V +
Sbjct: 64 LIDLNKSLQKEYDSNLVILYGQPAEIFEKL--AHESEKLYFELDTEPYAQDRDRKVVQIC 121
Query: 127 KEYKVKVEQHVSHTL 141
++ V+V ++ HTL
Sbjct: 122 EKAGVQVHRNTGHTL 136
>gi|15341192|gb|AAK94666.1| cryptochrome 2a [Xenopus laevis]
Length = 501
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 50/72 (69%)
Query: 74 KFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKV 133
R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD ++ +AKE V+V
Sbjct: 2 SLRTLNSRLFVVRGQPADVFPRLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAKEAGVEV 61
Query: 134 EQHVSHTLYNTN 145
SHTLY+ +
Sbjct: 62 VVENSHTLYDLD 73
>gi|323455593|gb|EGB11461.1| hypothetical protein AURANDRAFT_20741 [Aureococcus
anophagefferens]
Length = 529
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/93 (44%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 5 PECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFL 64
P+ W RK +RLHDN L+ A ++G +L P+++LDPHF + VG R+RFL
Sbjct: 3 PKTTAVWFRKCLRLHDNAPLVEAA----KRGGRLL--PIFVLDPHFARPEFVGAPRYRFL 56
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIF 97
+SLADLD R GSRL VV+G+ E +F
Sbjct: 57 LESLADLDASLRKRGSRLCVVRGETEATLDGLF 89
>gi|222622395|gb|EEE56527.1| hypothetical protein OsJ_05816 [Oryza sativa Japonica Group]
Length = 551
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 75/146 (51%), Gaps = 17/146 (11%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK---------FMRVGPNRW 61
W RKG+R+HDNPAL +A G L P+++LDP + + R G R
Sbjct: 18 WFRKGLRVHDNPALDAA----RRGGAVARLYPVFVLDPRYLRPDQAAPSPGSARAGVARV 73
Query: 62 RFLQQSLADLDQKFRALGSRLYVV----QGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKK 117
RFL +SL+DLD + R LGSRL ++ G K WNI L +E D EPYA
Sbjct: 74 RFLLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALA 133
Query: 118 RDGLVEDMAKEYKVKVEQHVSHTLYN 143
RD V D A + V VSHTL++
Sbjct: 134 RDKKVMDFAAASGIDVFSPVSHTLFD 159
>gi|58176791|pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176792|pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176793|pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176794|pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
Length = 474
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN L +A + Q+ L L+ LDP + + P R +LQ L +
Sbjct: 7 WHRRDLRLSDNIGLAAA------RAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQE 60
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L Q+++ GSRL ++QG P+ + P + + + + W DIEPY + RDG V K
Sbjct: 61 LQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAG 120
Query: 131 VKVEQ 135
++ Q
Sbjct: 121 IRAVQ 125
>gi|56751401|ref|YP_172102.1| DNA photolyase [Synechococcus elongatus PCC 6301]
gi|118595452|sp|P05327.4|PHR_SYNP6 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|56686360|dbj|BAD79582.1| DNA photolyase [Synechococcus elongatus PCC 6301]
Length = 484
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN L +A + Q+ L L+ LDP + + P R +LQ L +
Sbjct: 8 WHRRDLRLSDNIGLAAA------RAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQE 61
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L Q+++ GSRL ++QG P+ + P + + + + W DIEPY + RDG V K
Sbjct: 62 LQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAG 121
Query: 131 VKVEQ 135
++ Q
Sbjct: 122 IRAVQ 126
>gi|81298923|ref|YP_399131.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
gi|79621|pir||S00757 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [validated] -
Synechococcus sp. (Anacystis nidulans)
gi|48425154|pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
gi|48425155|pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
gi|48425156|pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
gi|48425157|pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
gi|48425158|pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
gi|157833609|pdb|1QNF|A Chain A, Structure Of Photolyase
gi|580717|emb|CAA30190.1| unnamed protein product [Synechococcus elongatus PCC 6301]
gi|81167804|gb|ABB56144.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
Length = 484
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN L +A + Q+ L L+ LDP + + P R +LQ L +
Sbjct: 8 WHRRDLRLSDNIGLAAA------RAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQE 61
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L Q+++ GSRL ++QG P+ + P + + + + W DIEPY + RDG V K
Sbjct: 62 LQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAG 121
Query: 131 VKVEQ 135
++ Q
Sbjct: 122 IRAVQ 126
>gi|255533599|ref|YP_003093971.1| DASH family cryptochrome [Pedobacter heparinus DSM 2366]
gi|255346583|gb|ACU05909.1| cryptochrome, DASH family [Pedobacter heparinus DSM 2366]
Length = 430
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 11/138 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPN-----RWRFLQ 65
W R +RLHDN L+ AI K +IL P+Y DP + + R G R FL
Sbjct: 9 WFRNDLRLHDNEMLVEAI----AKSDSIL--PVYFFDPRYFENTRFGTAKTGIVRASFLL 62
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+ L + F+ G + +VQGKPE++ D+ + ++I + ++ P + G VED+
Sbjct: 63 ESILSLRKAFQRFGGDILLVQGKPEDMIRDLVEQFDIAEVYHHREVGPEETEISGHVEDL 122
Query: 126 AKEYKVKVEQHVSHTLYN 143
K+ ++ + HTLYN
Sbjct: 123 LWTLKINLKHFIGHTLYN 140
>gi|156744316|ref|YP_001434445.1| deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
gi|156235644|gb|ABU60427.1| Deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
Length = 487
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+HW R+ +RLHDNPAL +A + + + PL+ILD R G R F+ +L
Sbjct: 4 IHWFRRDLRLHDNPALHTASIRSDGR-----VIPLFILDDAILHAPRTGAARIAFMIAAL 58
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DLD RA GSRL + +G+ +V + + + W D P+A++RD VE ++
Sbjct: 59 RDLDANLRARGSRLVIRRGRTLDVIRAMVQETGATGVAWNRDYTPFARRRDAQVEAALRD 118
Query: 129 YKVK 132
V+
Sbjct: 119 LNVE 122
>gi|348680515|gb|EGZ20331.1| DNA photolyase cryptochrome [Phytophthora sojae]
Length = 708
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 6/140 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKN----EKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
A+ W ++ +R+HDN AL +A+ + G ++ L P+YIL H K R G R++F
Sbjct: 119 AIVWFKRDLRMHDNLALDAAVRAQQLLQRAGGGDMALLPVYIL--HRPKHQRCGAVRFQF 176
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L +++ DL + + L RL V++G +EV + W I L +E + Y+ RD V
Sbjct: 177 LLEAVEDLAKSIKNLQGRLLVLRGDADEVLRAVMTAWGITDLFFEAGVMLYSVARDNRVR 236
Query: 124 DMAKEYKVKVEQHVSHTLYN 143
+A+ VKV TLY+
Sbjct: 237 AVAETLDVKVTSIRGVTLYD 256
>gi|242060916|ref|XP_002451747.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor]
gi|241931578|gb|EES04723.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor]
Length = 550
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 79/144 (54%), Gaps = 11/144 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK---------FMRVGPNRW 61
W RKG+R+HDNPAL +A Y L P+++LDP + + R G R
Sbjct: 13 WFRKGLRVHDNPALDAARRYGAGAASARRLYPVFVLDPRYLRPDPAASSPGSARAGVARI 72
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPE--EVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
RFL +SL+DLD + R LGSRL +++ + + + K WNI L +E D EPYA RD
Sbjct: 73 RFLLESLSDLDARLRRLGSRLLLLRARDDVADAVCAALKDWNIGKLCFESDTEPYALARD 132
Query: 120 GLVEDMAKEYKVKVEQHVSHTLYN 143
V D A ++V VSHTL++
Sbjct: 133 KKVTDFALASGIEVFTPVSHTLFD 156
>gi|413936068|gb|AFW70619.1| hypothetical protein ZEAMMB73_082662 [Zea mays]
Length = 397
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 78/144 (54%), Gaps = 12/144 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK---------FMRVGPNRW 61
W RKG+R+HDNPAL A + L P+++LDP + + R G R
Sbjct: 13 WFRKGLRVHDNPAL-DAARRHGAGAASARLYPVFVLDPRYLRPDAVAASPGSARAGVARI 71
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPE--EVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
RFL +SL+DLD + R LGSRL +++ + + + K WNI L +E D EPYA RD
Sbjct: 72 RFLLESLSDLDARLRRLGSRLLLLRARDDVADAVCAALKDWNIGKLCFESDTEPYALARD 131
Query: 120 GLVEDMAKEYKVKVEQHVSHTLYN 143
V D A ++V VSHTL++
Sbjct: 132 KKVTDFALASGIEVLTPVSHTLFD 155
>gi|226494726|ref|NP_001146620.1| uncharacterized protein LOC100280217 [Zea mays]
gi|219888051|gb|ACL54400.1| unknown [Zea mays]
Length = 421
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 78/144 (54%), Gaps = 12/144 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK---------FMRVGPNRW 61
W RKG+R+HDNPAL A + L P+++LDP + + R G R
Sbjct: 13 WFRKGLRVHDNPAL-DAARRHGAGAASARLYPVFVLDPRYLRPDAVAASPGSARAGVARI 71
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPE--EVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
RFL +SL+DLD + R LGSRL +++ + + + K WNI L +E D EPYA RD
Sbjct: 72 RFLLESLSDLDARLRRLGSRLLLLRARDDVADAVCAALKDWNIGKLCFESDTEPYALARD 131
Query: 120 GLVEDMAKEYKVKVEQHVSHTLYN 143
V D A ++V VSHTL++
Sbjct: 132 KKVTDFALASGIEVLTPVSHTLFD 155
>gi|147865945|emb|CAN80978.1| hypothetical protein VITISV_029095 [Vitis vinifera]
Length = 633
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 69/146 (47%), Gaps = 39/146 (26%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK---------FMRVGP 58
++ W RKG+R+HDNPAL A N + P++++DP+F + R G
Sbjct: 154 SLMWFRKGLRIHDNPALQHAAMESN------CVYPVFVIDPYFMEPDPNAFSPGSSRAGL 207
Query: 59 NRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR 118
NR RFL +SL DLD R LGSRL V++G P EV K
Sbjct: 208 NRIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIQCLK-------------------- 247
Query: 119 DGLVEDMAKEYKVKVEQHVSHTLYNT 144
++ A ++V VSHTL+++
Sbjct: 248 ----KNYASAAGIEVFSPVSHTLFDS 269
>gi|357139910|ref|XP_003571518.1| PREDICTED: (6-4)DNA photolyase-like [Brachypodium distachyon]
Length = 547
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 77/144 (53%), Gaps = 17/144 (11%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP---------HFRKFMRVGPNRW 61
W RKG+R+HDNPAL +A + + P+++LDP H R G R
Sbjct: 19 WFRKGLRVHDNPALDAA------RRGAARVYPVFVLDPRYLRPDPAAHSPGSARAGVARV 72
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPE--EVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
RFL +SL+DLD R LGSRL +++ + + + + WNI L +E D EPYA RD
Sbjct: 73 RFLLESLSDLDAGLRRLGSRLLLLRARDDVPDALCAALRDWNIGKLCFEADTEPYALARD 132
Query: 120 GLVEDMAKEYKVKVEQHVSHTLYN 143
V D A ++V VSHTL++
Sbjct: 133 KRVTDFAAALGIEVFTPVSHTLFD 156
>gi|218190281|gb|EEC72708.1| hypothetical protein OsI_06300 [Oryza sativa Indica Group]
Length = 551
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 73/146 (50%), Gaps = 17/146 (11%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF---------RKFMRVGPNRW 61
W RKG+R+HDNPAL + G L P+++LDP F R G R
Sbjct: 18 WFRKGLRVHDNPAL----DAARRGGAAARLYPVFVLDPRFLLPDQAAPSPGSARAGVARV 73
Query: 62 RFLQQSLADLDQKFRALGSRLYVV----QGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKK 117
RFL +SL+DLD + R LGSRL ++ G K WNI L +E D EPYA
Sbjct: 74 RFLLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALA 133
Query: 118 RDGLVEDMAKEYKVKVEQHVSHTLYN 143
RD V D A + V VSHTL++
Sbjct: 134 RDKKVMDFAAASGIDVFSPVSHTLFD 159
>gi|172037341|ref|YP_001803842.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|354553774|ref|ZP_08973080.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
gi|171698795|gb|ACB51776.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|353554491|gb|EHC23881.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
Length = 476
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L A ++ L L+ LDP+ + + P R ++ L
Sbjct: 6 IFWHRRDLRLSDNIGLSKAYQKSSK------LVGLFCLDPNILQRDDIAPARVNYMLGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L + ++ LG +L + QG+P ++ P++ K+ + + W D+EPY+K+RD V++ +E
Sbjct: 60 RNLQESYQKLGGQLLIFQGQPTKIIPEVAKSLKVNCVIWNNDVEPYSKERDKQVKEALQE 119
Query: 129 YKVKVEQHVSHTLY 142
+ E + L+
Sbjct: 120 KGITSETYWDQLLH 133
>gi|254414764|ref|ZP_05028529.1| deoxyribodipyrimidine photolyase family [Coleofasciculus
chthonoplastes PCC 7420]
gi|196178612|gb|EDX73611.1| deoxyribodipyrimidine photolyase family [Coleofasciculus
chthonoplastes PCC 7420]
Length = 475
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R+ DN L +A +K Q ++ ++ LDP + + P R ++ L
Sbjct: 6 LFWHRRDLRISDNIGLAAAC----QKSQKVI--GVFCLDPDILERDDIAPARVTYMMGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L Q++ GS+L ++ P + P + T N K + W D+EPYA+ RD V+D +E
Sbjct: 60 QELQQRYAEAGSQLLILHQNPSQGIPTLADTLNAKAVVWNRDVEPYARTRDRTVQDALEE 119
Query: 129 YKVKVEQHVSHTLY 142
+ VE L+
Sbjct: 120 KGIAVESFWDQLLH 133
>gi|413936069|gb|AFW70620.1| hypothetical protein ZEAMMB73_082662 [Zea mays]
Length = 548
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 78/144 (54%), Gaps = 12/144 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK---------FMRVGPNRW 61
W RKG+R+HDNPAL A + L P+++LDP + + R G R
Sbjct: 13 WFRKGLRVHDNPAL-DAARRHGAGAASARLYPVFVLDPRYLRPDAVAASPGSARAGVARI 71
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPE--EVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
RFL +SL+DLD + R LGSRL +++ + + + K WNI L +E D EPYA RD
Sbjct: 72 RFLLESLSDLDARLRRLGSRLLLLRARDDVADAVCAALKDWNIGKLCFESDTEPYALARD 131
Query: 120 GLVEDMAKEYKVKVEQHVSHTLYN 143
V D A ++V VSHTL++
Sbjct: 132 KKVTDFALASGIEVLTPVSHTLFD 155
>gi|297598791|ref|NP_001046243.2| Os02g0204400 [Oryza sativa Japonica Group]
gi|306756329|sp|Q0E2Y1.1|UVR3_ORYSJ RecName: Full=(6-4)DNA photolyase
gi|255670698|dbj|BAF08157.2| Os02g0204400 [Oryza sativa Japonica Group]
Length = 551
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 74/146 (50%), Gaps = 17/146 (11%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK---------FMRVGPNRW 61
W RKG+R+HDNPAL + G L P+++LDP + + R G R
Sbjct: 18 WFRKGLRVHDNPAL----DAARRGGAAARLYPVFVLDPRYLRPDQAAPSPGSARAGVARV 73
Query: 62 RFLQQSLADLDQKFRALGSRLYVV----QGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKK 117
RFL +SL+DLD + R LGSRL ++ G K WNI L +E D EPYA
Sbjct: 74 RFLLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALA 133
Query: 118 RDGLVEDMAKEYKVKVEQHVSHTLYN 143
RD V D A + V VSHTL++
Sbjct: 134 RDKKVMDFAAASGIDVFSPVSHTLFD 159
>gi|46390519|dbj|BAD16007.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group]
gi|51536259|dbj|BAD38427.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group]
Length = 560
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 74/146 (50%), Gaps = 17/146 (11%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK---------FMRVGPNRW 61
W RKG+R+HDNPAL + G L P+++LDP + + R G R
Sbjct: 18 WFRKGLRVHDNPAL----DAARRGGAAARLYPVFVLDPRYLRPDQAAPSPGSARAGVARV 73
Query: 62 RFLQQSLADLDQKFRALGSRLYVV----QGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKK 117
RFL +SL+DLD + R LGSRL ++ G K WNI L +E D EPYA
Sbjct: 74 RFLLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALA 133
Query: 118 RDGLVEDMAKEYKVKVEQHVSHTLYN 143
RD V D A + V VSHTL++
Sbjct: 134 RDKKVMDFAAASGIDVFSPVSHTLFD 159
>gi|392587897|gb|EIW77230.1| hypothetical protein CONPUDRAFT_129501 [Coniophora puteana
RWD-64-598 SS2]
Length = 658
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 8/138 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +R+HD+PAL +A+ E +L P++ DP + RVG NR+ FL +S+
Sbjct: 8 LYWFRTDLRVHDSPALHAALALNPE-----VLYPVWTWDPEYVFSHRVGVNRFNFLLESM 62
Query: 69 ADLDQKF--RALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG-LVEDM 125
DL R+ SRL VV+ P+ P + + W I L +E D YA RD +V+ +
Sbjct: 63 HDLSAALTTRSPESRLLVVRAPPQMAIPALCRQWKITHLVYERDTAGYAAIRDSEVVKRV 122
Query: 126 AKEYKVKVEQHVSHTLYN 143
+V HTLY+
Sbjct: 123 RALGGTEVLAVHGHTLYD 140
>gi|392401812|ref|YP_006438424.1| DNA photolyase FAD-binding protein [Turneriella parva DSM 21527]
gi|390609766|gb|AFM10918.1| DNA photolyase FAD-binding protein [Turneriella parva DSM 21527]
Length = 444
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 7/136 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRV-GPNRWRFLQQ 66
A+HW R+ +RL DN AL +A+ + + ++I DP+ + +++ +R F+
Sbjct: 15 AIHWFRRDLRLDDNTALNAAL------ATGLPVMCVFIFDPNILRHLKIKNDSRITFIFD 68
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
+L LD RA GS L + P V+ +F+++N++ + D EPYA++RD V +
Sbjct: 69 TLQKLDADLRARGSMLRIFFDAPLSVYERLFQSFNVRGIWCNEDYEPYARERDAAVAGLC 128
Query: 127 KEYKVKVEQHVSHTLY 142
K + H H ++
Sbjct: 129 KAKGAEFHAHKDHVVF 144
>gi|443316924|ref|ZP_21046350.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 6406]
gi|442783454|gb|ELR93368.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 6406]
Length = 478
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RLHDN L +A + ++ + ++ LDP V P R +L LA
Sbjct: 8 WHRRDLRLHDNLGLAAA------RARSPQVTGVFCLDPGILHRDDVAPVRVAYLMNCLAA 61
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L ++ A G L ++QG P +V P++ + + L W D+EPYA+ RD V KE
Sbjct: 62 LQGRYAAAGGELLILQGSPAQVLPNLAQVIAVTALYWNRDVEPYARDRDTHVAAACKEQG 121
Query: 131 VKVE 134
++++
Sbjct: 122 IEIK 125
>gi|428301495|ref|YP_007139801.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 6303]
gi|428238039|gb|AFZ03829.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 6303]
Length = 476
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 6/121 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R+ DN L +A ++ ++ L+ LDP+ V P R ++ L
Sbjct: 8 WHRRDLRIADNTGLATA----RDRTHRVI--GLFCLDPNILNPDHVAPVRVTYMIGCLQA 61
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L Q++ +GS+L +VQG+P +V P + K + W +D+EPY++KRD V D KE
Sbjct: 62 LQQRYAEVGSQLLIVQGEPTQVIPTLATALGAKAVFWNWDVEPYSQKRDHTVIDALKEQG 121
Query: 131 V 131
+
Sbjct: 122 I 122
>gi|449015791|dbj|BAM79193.1| probable photolyase/blue-light receptor [Cyanidioschyzon merolae
strain 10D]
Length = 438
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 80/146 (54%), Gaps = 14/146 (9%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRV 56
GGT + W R +RL DNPAL +A+ E+G ++L P+Y DP F K F +
Sbjct: 99 GGT---VLLWFRSDLRLDDNPALCAAL----EEGASVL--PVYCFDPRQFGKTSFGFEKT 149
Query: 57 GPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAK 116
G R +FL +S+ADL + + G+ L + GKPEEV PD+ + + IK + + ++
Sbjct: 150 GRYRAKFLIESVADLRKALKKKGNNLLIRIGKPEEVIPDLCRKYEIKKVFYHQEVTYEEL 209
Query: 117 KRDGLVEDMAKEYKVKVEQHVSHTLY 142
+ + V ++ KV+V ++TLY
Sbjct: 210 ECEEAVARKLEDMKVEVHPFWTNTLY 235
>gi|348681082|gb|EGZ20898.1| DNA photolyase [Phytophthora sojae]
Length = 516
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 4/137 (2%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQN--ILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
W+R+ +RLHDN AL +A++ ++G + L PLYI+ H + MR G R++F+ +S+
Sbjct: 6 WLRRDLRLHDNLALSAALHLAKQQGDGGKVELIPLYIV--HRPQIMRCGARRFQFVLESV 63
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DL GSRL V +G +V + W I L ++ EPYA +RD +AK
Sbjct: 64 EDLADALEERGSRLVVAKGDGLQVLRRLLPAWGITHLYFDAVSEPYAVERDNRALALAKS 123
Query: 129 YKVKVEQHVSHTLYNTN 145
V+ + LYN +
Sbjct: 124 LGVQTHVTRGYELYNMD 140
>gi|427723364|ref|YP_007070641.1| deoxyribodipyrimidine photo-lyase type I [Leptolyngbya sp. PCC
7376]
gi|427355084|gb|AFY37807.1| deoxyribodipyrimidine photo-lyase type I [Leptolyngbya sp. PCC
7376]
Length = 475
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 6/129 (4%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
E +HW R+ +RLHDN AL A + Q+ + ++ DP + P R ++L
Sbjct: 3 ELVLHWHRRDLRLHDNVALTRA------RKQSEKVVGVFCFDPAILTADDMAPARVKYLL 56
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
L +L + + +GS L ++ GKP E+ P + + W D+EPYA+KRD +
Sbjct: 57 ACLEELSESYCQVGSELLILNGKPVELLPRVTAILKATAVYWNLDVEPYAQKRDHDMAIA 116
Query: 126 AKEYKVKVE 134
++ KVE
Sbjct: 117 LRQAGAKVE 125
>gi|119484468|ref|ZP_01619085.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
gi|119457942|gb|EAW39065.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
Length = 479
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 6/124 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R+ D+ L +A EK ++ ++ LDP+ V P R ++ L +
Sbjct: 8 WHRRDLRISDHKGLAAA----REKSSQVV--GVFCLDPNILDQDDVAPARVTYMIGCLQE 61
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L +++ +GS+L ++QG+P P + K K + W D+EPYAK RD V + KE
Sbjct: 62 LQKQYEKVGSQLLILQGQPSSAIPKLAKALEAKAVYWNLDVEPYAKDRDQQVSEALKEVN 121
Query: 131 VKVE 134
+ VE
Sbjct: 122 IGVE 125
>gi|313674183|ref|YP_004052179.1| deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126]
gi|312940881|gb|ADR20071.1| Deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126]
Length = 433
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 75/141 (53%), Gaps = 7/141 (4%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPN-RWRFL 64
+ ++ W R+ +RL+DN AL AI +NI + PL+I D ++ + R F+
Sbjct: 3 KISIFWFRRDLRLYDNTALYYAIQ------ENIPVLPLFIFDSEILDDLKDKSDARVNFI 56
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
L +++ + + +GS + + GKPEEV+ + K +NI+ + D EPYA +RD +++
Sbjct: 57 HDQLTEINDQLKKIGSGVLIKHGKPEEVYKSLIKEYNIQAVFTNRDYEPYALERDQKIDN 116
Query: 125 MAKEYKVKVEQHVSHTLYNTN 145
+ ++ + H ++ +
Sbjct: 117 ILQQKGIGFYDFKDHVIFEKD 137
>gi|325105098|ref|YP_004274752.1| DASH family cryptochrome [Pedobacter saltans DSM 12145]
gi|324973946|gb|ADY52930.1| cryptochrome, DASH family [Pedobacter saltans DSM 12145]
Length = 433
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 11/138 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK-----FMRVGPNRWRFLQ 65
W R +R+HDN L+ A E + P+YI DP + + G R +F+
Sbjct: 9 WFRNDLRIHDNEILIEATLKSTE------IVPVYIFDPRYYTDTSYGTKKTGKLRAQFII 62
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
S+ DL + +ALG L VV+GKPEEV P + K +++ + ++ VED
Sbjct: 63 DSVTDLKKSLKALGGDLLVVKGKPEEVLPQLIKEYHVDEVYHHREVASEETDISSAVEDA 122
Query: 126 AKEYKVKVEQHVSHTLYN 143
+ +V ++ + HTLY+
Sbjct: 123 LWKSQVNLKHFIGHTLYH 140
>gi|86605025|ref|YP_473788.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
gi|86553567|gb|ABC98525.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
Length = 488
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 11/138 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRFLQ 65
W R +RL D+ L A Q L PLY LDP HF + F + GP R +FL
Sbjct: 6 WFRTDLRLLDHQPLTRACQ------QGSFLIPLYCLDPRHFGRTAFGFPKTGPFRAQFLL 59
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+SLADL Q+ RA GS L + QG+PE+V P + + W +K + ++ + ++
Sbjct: 60 ESLADLRQQLRARGSDLVIRQGQPEQVIPALAREWGVKAVYAHEEVGTEEEAVARALQQA 119
Query: 126 AKEYKVKVEQHVSHTLYN 143
+ + + HTLY+
Sbjct: 120 LQPLGIPLHLEWGHTLYH 137
>gi|254424429|ref|ZP_05038147.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335]
gi|196191918|gb|EDX86882.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335]
Length = 490
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 11/140 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRFLQ 65
W+R +RLHD+ L A E+G +I+ P+Y DP F+ F + G R +FL
Sbjct: 6 WLRNDLRLHDHEPLHRA----TEQGADII--PVYCFDPRQFQATSFGFPKTGSYRAQFLI 59
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+++A L + R+ GS L ++QGKPEE P + K ++I + W ++ P + + +E +
Sbjct: 60 ETVAALKAELRSRGSNLVILQGKPEEEIPALVKAFDIAAVYWHEEVTPEEIEVEQRLETV 119
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
+ KV E + TLY+ +
Sbjct: 120 LNQLKVTSEVYWGATLYHPD 139
>gi|443328462|ref|ZP_21057059.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
gi|442791916|gb|ELS01406.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
Length = 474
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L +A K Q + + ++ LD + P R +++ L
Sbjct: 6 LFWHRRDLRLTDNLGLAAA------KEQTVKVVGVFCLDRDILTRDDIAPARVKYMMGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L Q + +GS+L + QG P +V P + T + K + W D+EPYA+KRD V ++
Sbjct: 60 QELSQSYGQIGSQLLITQGTPSQVIPQLASTLSAKAVYWNLDVEPYARKRDREVTIALQD 119
Query: 129 YKVKVE 134
+ V+
Sbjct: 120 KDITVQ 125
>gi|149375532|ref|ZP_01893302.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
gi|149360237|gb|EDM48691.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
Length = 440
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 60/100 (60%), Gaps = 12/100 (12%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFR-----KFMRVGPNRWR 62
+++W + +RLHDN ALL+A ++ +L +Y++DP + + +G +RWR
Sbjct: 3 SLYWFTRDLRLHDNAALLAA-------SKSDMLLCVYVVDPRWFVPGPFQCRALGAHRWR 55
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI 102
FL QSL L++ R LG RL++ GKPE+V PD+ NI
Sbjct: 56 FLWQSLISLERDLRPLGQRLHIAFGKPEQVIPDLVHDHNI 95
>gi|333898405|ref|YP_004472278.1| DASH family cryptochrome [Pseudomonas fulva 12-X]
gi|333113670|gb|AEF20184.1| cryptochrome, DASH family [Pseudomonas fulva 12-X]
Length = 472
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/124 (37%), Positives = 68/124 (54%), Gaps = 17/124 (13%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKF-----MRVGPNRWR 62
A+ W ++ +RL D+PAL +A+ N LL PLY+LDP +F R+G +R R
Sbjct: 3 ALLWFKQDLRLDDHPALQAAL------ASNCLL-PLYVLDPALLQFDEFGSRRIGVHRAR 55
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEP-----YAKK 117
FL +SL LD R GS+L VV GKPEEV + ++++ + +I P A+
Sbjct: 56 FLLESLTALDSALRQRGSKLLVVSGKPEEVIAQLVGQFDMRQVITLDEIAPQERAVIARV 115
Query: 118 RDGL 121
RD L
Sbjct: 116 RDAL 119
>gi|372210250|ref|ZP_09498052.1| deoxyribodipyrimidine photo-lyase [Flavobacteriaceae bacterium S85]
Length = 428
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 6/123 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R+ +R DN L A+ N + P++I D H + + R F+ ++L
Sbjct: 6 VFWFRRDLRTFDNTGLNKALQSSNP------VLPIFIFDEHILDELPIKDARVTFIYKAL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
A +D++ + S L V+QGKPEEV+ +FK + I+ + D EPYA RD + + KE
Sbjct: 60 AAIDKELKKHQSSLLVLQGKPEEVWQQLFKDYQIQEVFTNKDYEPYALNRDRAIYKLTKE 119
Query: 129 YKV 131
++
Sbjct: 120 HQA 122
>gi|260436423|ref|ZP_05790393.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
gi|260414297|gb|EEX07593.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
Length = 477
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF----RKFMRVGPNRWRFLQQ 66
W R+ +RL DN L++A + + +Y+LDP + P R FL +
Sbjct: 9 WHRRDLRLADNLGLVAATDISPA------VTGVYVLDPQLINPTEHLPPMAPARLWFLIE 62
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
SL +L Q++R GSRL VV+G P V P + + + + W D+EPYA++RD
Sbjct: 63 SLVELQQRWREAGSRLLVVKGDPVAVLPQLAQQIGAEAVVWSRDVEPYARERD 115
>gi|325180459|emb|CCA14865.1| cryptochrome putative [Albugo laibachii Nc14]
Length = 616
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RLHDN AL +AI + + +L P+YIL H + + G R++FL + L D
Sbjct: 77 WFRRDLRLHDNGALHAAIQATDS---DTVLFPVYIL--HRPENKKCGAVRFQFLLECLED 131
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
+D R SRL V G+ + + W I L +E PYA KRD + MA+
Sbjct: 132 IDTSLRQKQSRLLVFCGEAISFLTVLMQAWKITDLIFEKFQLPYAIKRDEKIMSMAQTLH 191
Query: 131 VKVEQHVSHTLYN 143
+ V TL++
Sbjct: 192 INVTTVSGATLHD 204
>gi|116075564|ref|ZP_01472823.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
gi|116066879|gb|EAU72634.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
Length = 492
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN L +A + +L P I PH M P R FL ++L +
Sbjct: 9 WHRRDLRLADNKGLQAAAALGSAVTGVYVLDPAIITPPHHLPPM--APARLWFLVETLRE 66
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
L Q++R GSRL VV G P V P + L W D+EPYA++RD
Sbjct: 67 LQQRWRDAGSRLIVVAGDPVAVLPRLAALLEAPTLVWSRDVEPYARERD 115
>gi|428208935|ref|YP_007093288.1| deoxyribodipyrimidine photo-lyase type I [Chroococcidiopsis
thermalis PCC 7203]
gi|428010856|gb|AFY89419.1| deoxyribodipyrimidine photo-lyase type I [Chroococcidiopsis
thermalis PCC 7203]
Length = 477
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 69/125 (55%), Gaps = 6/125 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R+ DN L +A ++ Q ++ ++ LDP+ + V P R ++ L
Sbjct: 6 LFWHRRDLRISDNTGLAAA----RQRTQKVV--GVFCLDPNILERDDVAPVRVTYMIGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
L Q++ +GS+L ++QG+P E P + + K + W +D+EPY++ RD V + KE
Sbjct: 60 QQLQQRYAQVGSQLLILQGEPREAIPALATALSAKAVFWNWDVEPYSQVRDRTVIETLKE 119
Query: 129 YKVKV 133
++V
Sbjct: 120 KGIQV 124
>gi|17230217|ref|NP_486765.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
gi|17131818|dbj|BAB74424.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
Length = 479
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 70/131 (53%), Gaps = 6/131 (4%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
+ + W R+ +R+ DN L +A + Q+ + ++ LDP+ + V P R ++
Sbjct: 3 DLVLFWHRRDLRIADNIGLAAA------RQQSSKVVGVFCLDPNILERDDVAPARVTYMI 56
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
SL +L Q++ GS+L ++ G P + P + + N K + W +D+EPY++ RD + D+
Sbjct: 57 GSLQELQQRYVQAGSQLLILHGDPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAILDI 116
Query: 126 AKEYKVKVEQH 136
K+ ++ H
Sbjct: 117 LKDKGIQFLTH 127
>gi|78778672|ref|YP_396784.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. MIT 9312]
gi|78712171|gb|ABB49348.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. MIT 9312]
Length = 478
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W RK +R+ DN AL+ A + N + YILD ++ W FL SL
Sbjct: 7 LFWHRKDLRIFDNQALIKAFSLSNA------ITSTYILDRNYTHDFSANSRAW-FLGDSL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L + +GSRL + +G P + P + KT + K + W IEPY RD ++ KE
Sbjct: 60 QELGNNWEKMGSRLVIEEGDPVLIIPQLAKTIDAKFVIWNKTIEPYEINRDLQIKKNLKE 119
Query: 129 YKVKVEQHVSHTL 141
++V + H L
Sbjct: 120 KNIQVIESWDHLL 132
>gi|381186840|ref|ZP_09894408.1| cryptochrome [Flavobacterium frigoris PS1]
gi|379651146|gb|EIA09713.1| cryptochrome [Flavobacterium frigoris PS1]
Length = 429
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 11/144 (7%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILD-PHFRK----FMRVGPNR 60
+ A+ W + +RL+DN L+ AI Q+ + P+Y D HF F + G R
Sbjct: 2 KTAIVWFKTDLRLYDNETLIKAI------AQSEEILPIYCFDDSHFETTQYGFKKTGSYR 55
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
+FL +SL +LD R LGS L +V+GKPE P I + + + E ++ K+ +
Sbjct: 56 AQFLLESLKNLDANLRKLGSGLLIVKGKPEVEIPKIVAEYKVHKVFAEREVAFEEKRTEK 115
Query: 121 LVEDMAKEYKVKVEQHVSHTLYNT 144
LV+ + + ++E + TLY+
Sbjct: 116 LVQTELFKLRCELETFSTSTLYHA 139
>gi|374594255|ref|ZP_09667260.1| DNA photolyase FAD-binding [Gillisia limnaea DSM 15749]
gi|373872330|gb|EHQ04327.1| DNA photolyase FAD-binding [Gillisia limnaea DSM 15749]
Length = 434
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
+ + +V W R+ +RL DN L A+ ++ + P++I D + + R F
Sbjct: 2 SEKVSVFWFRRDLRLDDNVGFLEALK------SDLPVLPIFIFDTEILERLPKDDARVSF 55
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
+ ++L + ++ + GS L + GKP EVF D+ K + I+ + D EPYAKKRD +E
Sbjct: 56 IHENLQKMRKELQKNGSSLAIYHGKPVEVFKDLLKNYKIQQVFTNRDYEPYAKKRDSEIE 115
Query: 124 DMAKEYKVKVEQHVSHTLYNTN 145
+ + V+ ++ +
Sbjct: 116 KLLESETVQFHTFKDQVIFEKD 137
>gi|302838410|ref|XP_002950763.1| hypothetical protein VOLCADRAFT_37482 [Volvox carteri f.
nagariensis]
gi|300263880|gb|EFJ48078.1| hypothetical protein VOLCADRAFT_37482 [Volvox carteri f.
nagariensis]
Length = 97
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 11/103 (10%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF-----RKFMRV 56
G + AV W R +RLHDNP L A +G ++L P+Y+LDP F R
Sbjct: 1 GAARKPAVMWFRNDLRLHDNPVLDRAC----REGTSVL--PVYVLDPRDYGKGPNGFGRT 54
Query: 57 GPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99
GP R +F+ ++ DL + RA GS L V G PEEV P++ +
Sbjct: 55 GPTRAQFIMDAVQDLRSRLRAAGSDLIVRMGHPEEVVPELARV 97
>gi|452822894|gb|EME29909.1| photolyase/blue-light receptor [Galdieria sulphuraria]
Length = 444
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 52/91 (57%), Gaps = 11/91 (12%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRFLQ 65
W R +RLHDNPAL A E+G IL P+Y DP F K F + G R +FL
Sbjct: 120 WFRNDLRLHDNPALFRAA----EEGSLIL--PVYCFDPRQFGKTSFGFEKTGRYRAQFLI 173
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDI 96
S+ DL + FRA GS L V G+PEEV P++
Sbjct: 174 DSVEDLRKSFRAKGSDLIVRLGRPEEVLPEL 204
>gi|410665733|ref|YP_006918104.1| Cryptochrome [Simiduia agarivorans SA1 = DSM 21679]
gi|409028090|gb|AFV00375.1| Cryptochrome [Simiduia agarivorans SA1 = DSM 21679]
Length = 433
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 12/107 (11%)
Query: 5 PECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF-----RKFMRVGPN 59
P ++HW +RL DNPAL A L LY++DP + ++ +G
Sbjct: 2 PSVSLHWFINDLRLADNPALCRAAMADR-------LICLYVIDPRWFRPGRQQLPSMGEK 54
Query: 60 RWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLT 106
R FL QSLADLD++ RALG +L V++G PE + P++ + + + LT
Sbjct: 55 RRTFLLQSLADLDRRLRALGQQLLVLEGHPESLIPELVRRYRVNRLT 101
>gi|428779785|ref|YP_007171571.1| deoxyribodipyrimidine photolyase [Dactylococcopsis salina PCC 8305]
gi|428694064|gb|AFZ50214.1| deoxyribodipyrimidine photolyase [Dactylococcopsis salina PCC 8305]
Length = 476
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
E + W R+ +RL DN L A ++K +L ++ DP K +V P R ++L
Sbjct: 2 ELVLFWHRRDLRLKDNIGLFQA----HQKTAKVL--GVFCFDPQLLKKDQVAPARIKYLL 55
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
L +L + +R +GS L ++ P ++ +T N + W DIEPY++KRD V+
Sbjct: 56 GCLQELQENYRRVGSDLLILNADPVTAISNLAQTLNATGVFWNQDIEPYSRKRDRAVQSA 115
Query: 126 AKEYKVKVEQHVSHTLYN 143
+E + V+ L++
Sbjct: 116 LEEQGITVQTFWDQLLHS 133
>gi|86608285|ref|YP_477047.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556827|gb|ABD01784.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 486
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 16/141 (11%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKF--------MRVGPNRWR 62
W R +RL D+ L A Q L PLY LDP R+F R P R +
Sbjct: 6 WFRTDLRLLDHQPLTRACQ------QGSPLIPLYCLDP--RQFGETSLGLRPRTSPFRGQ 57
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FL +SLADL Q+ R+ GS L + QG+PE+V P + + W ++ + ++ K+ V
Sbjct: 58 FLLESLADLRQQLRSRGSDLVIRQGQPEQVIPTLAQEWGVEAVYAHEEVGTEEKEVAAAV 117
Query: 123 EDMAKEYKVKVEQHVSHTLYN 143
E + ++++ HTLY+
Sbjct: 118 ERALRSLGIRLQVDWGHTLYH 138
>gi|78183823|ref|YP_376257.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902]
gi|78168117|gb|ABB25214.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902]
Length = 477
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN + +A+ +L P I P + + P R FL +SL +
Sbjct: 9 WHRRDLRLADNLGIQAAVEISPAVTGVYVLDPALIQPP--QSLPPMAPARLWFLLESLIE 66
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
L Q++RA GSRL +++G P +V P + + + + W D+EPY+++RD
Sbjct: 67 LQQRWRAAGSRLLILEGDPVQVLPPLAERLGAEAVVWNRDVEPYSRERD 115
>gi|427718644|ref|YP_007066638.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 7507]
gi|427351080|gb|AFY33804.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 7507]
Length = 495
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 3 GTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWR 62
G + + W R+ +R+ DN L +A + Q+ + ++ LDPH + V P R
Sbjct: 17 GMSDLILFWHRRDLRISDNTGLTAA------RRQSPKVVGVFCLDPHILERDDVAPVRVT 70
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
++ L L Q++ GS+L ++ P P + + N K + W +D+EPY+++RD V
Sbjct: 71 YMIGCLQALQQRYAEAGSQLLILHADPVVAIPALAEALNAKAVFWNWDVEPYSQERDRTV 130
Query: 123 EDMAKEYKVKVEQH 136
D KE + Q
Sbjct: 131 IDALKEQGIAFLQQ 144
>gi|343496946|ref|ZP_08735031.1| deoxyribodipyrimidine photolyase [Vibrio nigripulchritudo ATCC
27043]
gi|342820399|gb|EGU55222.1| deoxyribodipyrimidine photolyase [Vibrio nigripulchritudo ATCC
27043]
Length = 444
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMR-----VGPNRWR 62
AV+W +R+ DNPAL+ A+ +N L LY LDP K R +G R
Sbjct: 4 AVYWFTNDLRIEDNPALIRALQTEN------TLHCLYCLDPRSLKPGRYSTKPIGEKRLS 57
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FL QSLA+LD+ RA G L+V P+++F +++ ++++ + + Y K
Sbjct: 58 FLLQSLAELDETLRAFGQHLHVYLENPDDLFCRLYQQYSVRRVHHSVNAGLYEK---AFF 114
Query: 123 EDMAKEYKVKVEQHVSHTLYN 143
+++ V + SHTL+N
Sbjct: 115 SRVSQRSDVVLNASHSHTLFN 135
>gi|123965553|ref|YP_001010634.1| DNA photolyase [Prochlorococcus marinus str. MIT 9515]
gi|123199919|gb|ABM71527.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9515]
Length = 478
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W RK +R++DN AL A + N + YI D ++ + W FL SL
Sbjct: 7 LFWHRKDLRIYDNNALSKAFSLSNA------ITSTYIFDQNYSQDFNANSRAW-FLGNSL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L + + LGSR+ + +G P + P + + + K + W IEPY RD +++ K+
Sbjct: 60 QELSRNWETLGSRMIIDEGNPLTLIPKLAQLIDAKFVAWNKAIEPYEINRDLEIKNTLKK 119
Query: 129 YKVKVEQHVSHTL 141
+K+++ + H L
Sbjct: 120 FKIEIIELWDHLL 132
>gi|409098421|ref|ZP_11218445.1| DASH family cryptochrome [Pedobacter agri PB92]
Length = 424
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 15/140 (10%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKF-------MRVGPNRWRF 63
W R +RLHDN L+ AI+ K +IL P+YILDP R F ++ G R +F
Sbjct: 8 WFRNDLRLHDNEMLVEAIS----KSDSIL--PVYILDP--RSFGETKYGTLKTGNIRAQF 59
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
+ +S+ L + +G L + +G PE++ P + + + I + ++ LVE
Sbjct: 60 ILESVLGLRASLKQIGGNLLIAEGNPEDIIPSLVQEYEITEVYHHREVAREETHVSTLVE 119
Query: 124 DMAKEYKVKVEQHVSHTLYN 143
+ + +V ++ + HTLYN
Sbjct: 120 NALWKLRVNLKHFIGHTLYN 139
>gi|383450756|ref|YP_005357477.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium indicum
GPTSA100-9]
gi|380502378|emb|CCG53420.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium indicum
GPTSA100-9]
Length = 428
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+ W R+ +RL DN AL A+N +N + P++I D K + R F+ Q
Sbjct: 2 TIFWFRRDLRLEDNTALFHALN------ENEEVLPIFIFDTTILKHLDKQDARVSFIHQE 55
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L ++ K +++G L + G PEE+F + +I+ + +D EP A+KRD V ++ K
Sbjct: 56 LNKINLKLKSIGKSLALFYGTPEEIFNQLIAENSIEAVYANHDYEPAARKRDKSVNELLK 115
>gi|416411130|ref|ZP_11688696.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
gi|357260360|gb|EHJ09791.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
Length = 518
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 6/142 (4%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR 60
+ + W R+ +R+ DN L A + ++ L L+ LD V P R
Sbjct: 40 LSSMTNSVIFWHRRDLRVSDNIGLSKAYQHSSK------LVGLFCLDTDILNQDNVAPAR 93
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
++ L DL + ++ LG +L + QG P ++ P + + + W D+EPY+KKRD
Sbjct: 94 ITYMLGCLQDLRESYQQLGGQLLIFQGNPTQIIPQVADALKVDCVFWNNDVEPYSKKRDN 153
Query: 121 LVEDMAKEYKVKVEQHVSHTLY 142
V + +E + + + L+
Sbjct: 154 QVIEALQERGIHSQTYWDQLLH 175
>gi|123967845|ref|YP_001008703.1| DNA photolyase [Prochlorococcus marinus str. AS9601]
gi|123197955|gb|ABM69596.1| putative DNA photolyase [Prochlorococcus marinus str. AS9601]
Length = 477
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W RK +R+ DN AL+ A + N + YI D ++ W FL SL
Sbjct: 7 LFWHRKDLRIFDNQALIKAFSLSNA------ITSTYIFDKNYSHDFNASSRAW-FLGNSL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L ++ +GSRL + +G P + P + K N K + W IEPY RD ++ KE
Sbjct: 60 QELGNNWKKMGSRLVMEEGDPVLIIPKLAKKINAKFVFWNRSIEPYEINRDLQIKKNLKE 119
Query: 129 YKVKVEQHVSHTL 141
++V + H L
Sbjct: 120 QNIQVIETWDHLL 132
>gi|67921140|ref|ZP_00514659.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
gi|67857257|gb|EAM52497.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
Length = 518
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 6/142 (4%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR 60
+ + W R+ +R+ DN L A + ++ L L+ LD V P R
Sbjct: 40 LSSMTNSVIFWHRRDLRVSDNIGLSKAYQHSSK------LVGLFCLDTDILNQDNVAPAR 93
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
++ L DL + ++ LG +L + QG P ++ P + + + W D+EPY+KKRD
Sbjct: 94 ITYMLGCLQDLRESYQQLGGQLLIFQGNPTQIIPQVADALKVDCVFWNNDVEPYSKKRDN 153
Query: 121 LVEDMAKEYKVKVEQHVSHTLY 142
V + +E + + + L+
Sbjct: 154 QVIEALQERGIHSQTYWDQLLH 175
>gi|254430204|ref|ZP_05043907.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
gi|197624657|gb|EDY37216.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
Length = 504
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN L +A + +++LDP + + P R FL +SL +
Sbjct: 13 WHRRDLRLADNLGLAAA------AAATPAVTGVFVLDPGILEAADLAPARLWFLAESLRE 66
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
L +++RA GSRL V++G P V P + +L W D+EPY ++RD
Sbjct: 67 LAERWRAAGSRLLVLRGDPAVVLPQLAAALRAPVLAWNRDVEPYGRERD 115
>gi|254422518|ref|ZP_05036236.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
gi|196190007|gb|EDX84971.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
Length = 480
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 6/124 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R+ DN L +A + + + ++ LDP + P R ++ SL
Sbjct: 7 LFWHRRDLRIRDNLGLAAA------RKRTPKVVGVFCLDPGILNGDDIAPARVSYMIGSL 60
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
A+L + +++ GS L +++GKPEE P++ + W D+EPYA++RD V K+
Sbjct: 61 AELQENYQSAGSELLILKGKPEEAIPNLASALGAAAVYWNRDVEPYARERDPNVASALKD 120
Query: 129 YKVK 132
++
Sbjct: 121 RDIE 124
>gi|116071567|ref|ZP_01468835.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
gi|116065190|gb|EAU70948.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
Length = 477
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN + +A+ +L P I P M P R FL +SL +
Sbjct: 9 WHRRDLRLADNLGIQAAVEISPAVTGVYVLDPALIHPPQALPPM--APARLWFLLESLIE 66
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
L Q++RA GSRL +++G P ++ P + + + + + W D+EPY+++RD
Sbjct: 67 LQQRWRAAGSRLLILEGDPVQMLPPLAERLSAEAVVWNRDVEPYSRERD 115
>gi|409098424|ref|ZP_11218448.1| deoxyribodipyrimidine photo-lyase [Pedobacter agri PB92]
Length = 134
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L A+ K N ++ PL+I D + + R F+ Q++
Sbjct: 7 IFWFRRDLRLEDNAGLYHAL-----KSDNPVI-PLFIFDKNILDKLPKNDARVTFIYQTI 60
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
D+ + + GS L V GKPE+++P+I K + +K + +D EPYA++RD + +
Sbjct: 61 KDIKETLQKKGSDLLVKYGKPEKIWPEILKEYEVKEVFTNHDYEPYARERDDNMAEFLTS 120
Query: 129 YKV 131
K+
Sbjct: 121 EKI 123
>gi|150026082|ref|YP_001296908.1| deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium
psychrophilum JIP02/86]
gi|149772623|emb|CAL44106.1| Deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium
psychrophilum JIP02/86]
Length = 430
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILD-PHFRK----FMRVGPNRWR 62
A+ W + +R+ DN ++ AI Q+ + P+Y D HF F + G R +
Sbjct: 5 AIVWFKTDLRVEDNETIIKAI------LQSEQIIPVYCFDDSHFETTKYGFKKTGSFRAQ 58
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FL +SL DLD+ RA+GS L + +GKPE P I K + + + + ++ KK + +V
Sbjct: 59 FLLESLQDLDKNLRAIGSGLVITKGKPEIEIPKIAKEYKAQKVFSKREVSFEEKKTEKMV 118
Query: 123 EDMAKEYKVKVEQHVSHTLY 142
++ + + ++E + TLY
Sbjct: 119 QNELFKLRCELETFSTSTLY 138
>gi|221633352|ref|YP_002522577.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159]
gi|221156145|gb|ACM05272.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159]
Length = 467
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 44/114 (38%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W+R+ +RLHDN AL +A+ E L PL++LDP R FL +L
Sbjct: 5 VWWVRRDLRLHDNQALAAALTRARE------LVPLFVLDPALLAGPTSSQRRNAFLFAAL 58
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
LD R GSRL V G+PE+V P + + L+ E D PYA++RD V
Sbjct: 59 RSLDAALRRRGSRLIVRAGRPEQVLPTVVRESGATLVMAEADGSPYARRRDEAV 112
>gi|363582222|ref|ZP_09315032.1| deoxyribodipyrimidine photo-lyase [Flavobacteriaceae bacterium
HQM9]
Length = 433
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
E + W R+ +RLHDN A++ + +N+L P++I D + R F+
Sbjct: 3 ELTIFWFRRDLRLHDNTGFFFALS----ENKNVL--PIFIFDTEILGKLPENDARVSFIH 56
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
SLAD+ K + + + + G+P +F +I K + + + +D EPYA +RD ++
Sbjct: 57 DSLADMHSKLKEMNKGISIFHGEPIAIFQEIEKKYKVTKVYTNHDYEPYALERDKILTAF 116
Query: 126 AKEYKVKVEQH 136
+E +K E +
Sbjct: 117 FEEKAIKFETY 127
>gi|428201469|ref|YP_007080058.1| deoxyribodipyrimidine photolyase [Pleurocapsa sp. PCC 7327]
gi|427978901|gb|AFY76501.1| deoxyribodipyrimidine photolyase [Pleurocapsa sp. PCC 7327]
Length = 477
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R+ DN L +A +K ++ ++ LD + K + P R ++ L
Sbjct: 6 LFWHRRDLRISDNIGLAAA----RQKSSRVV--GVFCLDRNLLKRDDIAPARITYMIGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L QK+ LGS+L +VQG P + + + ++ + + DIEPYAK+RD V++ KE
Sbjct: 60 QELQQKYLQLGSQLLIVQGDPNQAITALAEALKVQAVFFNLDIEPYAKQRDEKVKEALKE 119
Query: 129 YKVKVE 134
+ VE
Sbjct: 120 KGIAVE 125
>gi|428213636|ref|YP_007086780.1| deoxyribodipyrimidine photolyase [Oscillatoria acuminata PCC 6304]
gi|428002017|gb|AFY82860.1| deoxyribodipyrimidine photolyase [Oscillatoria acuminata PCC 6304]
Length = 479
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R+ DN L +A EK + ++ ++ LDP+ K + P R +++ L
Sbjct: 6 LFWHRRDLRITDNIGLATAF----EKSRKLV--GVFCLDPNILKGADIAPARVKYMLGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
A+L + + +GS+L+++ +P + + + + W DIEPY++ RD V KE
Sbjct: 60 AELQENYAKIGSQLFILFDEPRQAIAQLATALQAQFVYWNLDIEPYSQDRDQAVRSALKE 119
Query: 129 YKVKVEQHVSHTLY 142
+ VE L+
Sbjct: 120 QGIAVETFWDQLLH 133
>gi|62910844|gb|AAY21157.1| deoxyribopyrimidine photolyase [Prochloron didemni]
Length = 475
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R+ DN L +A + Q+ + L+ LDP+ V P R ++ L
Sbjct: 6 LFWHRRDLRISDNMGLAAA------RKQSSKIVGLFCLDPNILNSNEVAPARVTYMLGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
+L + + +GS+L +V+G+P E P + + + W D EPYA++RDG VE
Sbjct: 60 QELKESYSKIGSQLLIVRGEPIEAIPQLAVALQVTGVFWHKDGEPYARERDGKVE 114
>gi|409123337|ref|ZP_11222732.1| deoxyribodipyrimidine photolyase [Gillisia sp. CBA3202]
Length = 432
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
+ ++ W R+ +RL DN LL A+ KG +L P++I D + R F+
Sbjct: 4 KVSIFWFRRDLRLDDNVGLLEAL-----KGDFPVL-PIFIFDSEILDDLPKNDARLSFIF 57
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+L ++ ++ ++ GS L + GKP +F D+F ++++ + D EPYAK+RD +E +
Sbjct: 58 DTLQNIRKELQSSGSSLAMFFGKPAAIFKDLFDQYDVQKIFTNRDYEPYAKQRDEKIEKL 117
Query: 126 AKE 128
A +
Sbjct: 118 ASD 120
>gi|392391321|ref|YP_006427924.1| deoxyribodipyrimidine photolyase [Ornithobacterium rhinotracheale
DSM 15997]
gi|390522399|gb|AFL98130.1| deoxyribodipyrimidine photolyase [Ornithobacterium rhinotracheale
DSM 15997]
Length = 457
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+HW R+ +RL DN AL AI +K I +K ++I D K + R F+ Q
Sbjct: 27 VIHWFRRDLRLKDNTALHHAIQHK------IPVKCIFIFDTEILKHLPKQDKRVGFILQQ 80
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L L + R L S L +++G P E++ D+ + ++K + D EPYA +RD V+ +
Sbjct: 81 LLALKKSLRKLNSDLLILKGNPSEIWKDLAQDSHLKAVFTNRDYEPYALQRDEKVQRLLT 140
Query: 128 EYKVKVEQHVSHTLYNTN 145
+ ++ ++ N
Sbjct: 141 QKNIEFHTFKDQIIFEKN 158
>gi|126658357|ref|ZP_01729506.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
gi|126620289|gb|EAZ91009.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
Length = 476
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R+ DN L A ++ L L+ LD + + P R ++ L
Sbjct: 6 IFWHRRDLRVSDNIGLSQAYQKSSK------LVGLFCLDSNLLNRDDIAPARVNYMLGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
L + ++ LGS+L + QG+P ++ P + N+ + W D+EPY+K+RD V++ +E
Sbjct: 60 QHLQKSYQKLGSQLLIFQGEPTKIIPKVADALNVDCVFWNNDVEPYSKERDKQVKEALEE 119
Query: 129 YKVKVEQHVSHTLY 142
++ + + L+
Sbjct: 120 KSIQSKTYWDQLLH 133
>gi|392415860|ref|YP_006452465.1| deoxyribodipyrimidine photolyase [Mycobacterium chubuense NBB4]
gi|390615636|gb|AFM16786.1| deoxyribodipyrimidine photolyase [Mycobacterium chubuense NBB4]
Length = 446
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AV W R+ +RL D+PALL+A + + G ++L Y+LDP GP R ++L +
Sbjct: 3 AVLWFRRDLRLCDHPALLAAADV-DGAGTDVL--ACYVLDPRLEA--SAGPRRLQYLYDA 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
L DLD ALG RL V +G+P+ P + K + D P+ ++RD V D
Sbjct: 58 LRDLDS---ALGGRLLVTRGEPKRRIPAVAKAVGASSVHVSGDFTPFGRRRDDQVRD 111
>gi|120553261|ref|YP_957612.1| DNA photolyase FAD-binding subunit [Marinobacter aquaeolei VT8]
gi|120323110|gb|ABM17425.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Marinobacter aquaeolei VT8]
Length = 440
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 61/102 (59%), Gaps = 12/102 (11%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMR-----VGPNRWRF 63
++W + +RLHDNPALL+A ++ +L ++++DP + R +G +RWRF
Sbjct: 4 LYWFTRDLRLHDNPALLAA-------ARSDMLLCVFVVDPRWFTGDRFQCRALGDHRWRF 56
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLL 105
L QSL L++ R +G RL++ G+PE V P++ + ++ L
Sbjct: 57 LWQSLMALERSLRPMGQRLHIAWGEPEVVLPELAREHGVQRL 98
>gi|388494660|gb|AFK35396.1| unknown [Medicago truncatula]
Length = 456
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-----HFRKFMRVGPNRWR 62
A+ W R +R+HDN AL +A N ++I + P+Y DP F + GP R
Sbjct: 120 AIVWFRNDLRVHDNEALNTANN------ESISVLPVYCFDPADYGKSSSGFDKTGPYRAS 173
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FL +S++DL + +A GS L V GKPE V ++ K + ++ K + +
Sbjct: 174 FLIESISDLRKNLKARGSDLVVRVGKPETVLVELAKEIGADAVYCHREVSHDEVKMEEKI 233
Query: 123 EDMAKEYKVKVEQHVSHTLY 142
E KE V+V+ TLY
Sbjct: 234 EGKMKEENVEVKYFWGSTLY 253
>gi|352095147|ref|ZP_08956250.1| Deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8016]
gi|351679158|gb|EHA62300.1| Deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8016]
Length = 492
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN L +A+ +L P I P + P R FL ++L +
Sbjct: 9 WHRRDLRLADNLGLQAAVEISPAVTGVYVLDPALIHPPE--SLPPMAPARLWFLVETLRE 66
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
L Q++R +GSRL VV G P +V P + + W D+EPY+++RD
Sbjct: 67 LQQRWRDVGSRLLVVAGDPVQVLPRLASLLEAPAVVWSRDVEPYSRERD 115
>gi|313217172|emb|CBY38333.1| unnamed protein product [Oikopleura dioica]
Length = 571
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 14/122 (11%)
Query: 15 GMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQK 74
+RL+DN L +A+ KN K ++ Y LD +F+ RW+F++ +L+DLD++
Sbjct: 82 ALRLNDNAGLKAAM--KNCKA----VRFCYFLD---ERFINESSPRWKFIKSALSDLDEQ 132
Query: 75 FRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYA---KKRDGLVEDMAKEYKV 131
+ LGSRL+V+ G+P E P +F WN+ L + P ++RD + +A + V
Sbjct: 133 LKNLGSRLHVLSGQPSERLPQLFADWNVVRLG--FSAHPGCTDMRRRDRAIVSLALRHGV 190
Query: 132 KV 133
+V
Sbjct: 191 EV 192
>gi|111219604|ref|YP_710398.1| deoxyribodipyrimidine photo-lyase [Frankia alni ACN14a]
gi|111147136|emb|CAJ58783.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
(Photoreactivating enzyme) [Frankia alni ACN14a]
Length = 451
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 11/116 (9%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+V W+R+ +RL D+PAL +A+ + ++L+ L++LD R+ GP R FL +
Sbjct: 4 SVCWLRRDLRLSDSPALCAAV----DGADDVLV--LFVLDDALRR--PAGPVRLAFLYRC 55
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L +LD + LG RL V +G P +V P++ + + + + D PY ++RDG VE
Sbjct: 56 LRELDDR---LGGRLCVRRGDPVDVVPEVARAVDARRVHISADYGPYGRRRDGEVE 108
>gi|387812715|ref|YP_005428192.1| Deoxyribodipyrimidine photolyase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381337722|emb|CCG93769.1| Deoxyribodipyrimidine photolyase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 440
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 61/102 (59%), Gaps = 12/102 (11%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMR-----VGPNRWRF 63
++W + +RLHDNPALL+A ++ +L ++++DP + R +G +RWRF
Sbjct: 4 LYWFTRDLRLHDNPALLAA-------ARSDMLLCVFVVDPRWFTGDRFQCRALGDHRWRF 56
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLL 105
L QSL L++ R LG R+++ G+PE V P++ + ++ L
Sbjct: 57 LWQSLMALERSLRPLGQRMHIAWGEPEIVLPELAREHGVQRL 98
>gi|428222871|ref|YP_007107041.1| DASH family cryptochrome [Synechococcus sp. PCC 7502]
gi|427996211|gb|AFY74906.1| cryptochrome, DASH family [Synechococcus sp. PCC 7502]
Length = 501
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 11/140 (7%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRF 63
+ W R +R HD+ AL AI K + + P+Y +DP HF + F + G R +F
Sbjct: 6 IVWFRNDLRSHDHEALYRAIQTKAQ------IIPIYCIDPRHFAQTSFGFPKTGSFRAKF 59
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L +SL DL KF +LGS L + QG PE V P++ + + ++ K + +
Sbjct: 60 LLESLTDLRNKFISLGSNLIIRQGLPELVIPELAAQIQATDVYFHAEVTSEEIKVEAKLI 119
Query: 124 DMAKEYKVKVEQHVSHTLYN 143
D K+ +K E +TLY+
Sbjct: 120 DNLKKISIKSESFWGNTLYH 139
>gi|443474143|ref|ZP_21064164.1| Cryptochrome [Pseudomonas pseudoalcaligenes KF707]
gi|442905078|gb|ELS29993.1| Cryptochrome [Pseudomonas pseudoalcaligenes KF707]
Length = 472
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 44/113 (38%), Positives = 67/113 (59%), Gaps = 14/113 (12%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGP-----NRWR 62
A+ W+++ +RL D+PAL +AI Q L PL++LDP + + +GP +R R
Sbjct: 4 ALLWLKQDLRLDDHPALHAAI-------QADRLLPLFVLDPQWLRPSPLGPRRLGVHRAR 56
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI-KLLTWEYDIEPY 114
FL +SLA LD R GSRL VVQG E V P + + ++ ++LT E ++ P+
Sbjct: 57 FLLESLAALDAGLRQHGSRLLVVQGDAERVIPSLVERLDLDEVLTLE-EVAPF 108
>gi|219847792|ref|YP_002462225.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
gi|219542051|gb|ACL23789.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
Length = 479
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+HW R+ +RL DN ALL+A + G ++ P++I D P R +FL SL
Sbjct: 3 IHWFRRDLRLRDNTALLAA---ADASGGAVI--PVFIFDDAILGGRFASPARTQFLLDSL 57
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
LD + R+LG L + +G+P + + +TW D PYA +RD ++ +
Sbjct: 58 TALDGELRSLGLHLVLRRGEPLTTLMALLRESGAHGVTWNRDYTPYAVQRDSTIKRELRA 117
Query: 129 YKVKVEQHVSHTLYNTN 145
+ E + ++ N
Sbjct: 118 AGYRAESYKDAVIFEMN 134
>gi|357442473|ref|XP_003591514.1| DNA photolyase protein [Medicago truncatula]
gi|355480562|gb|AES61765.1| DNA photolyase protein [Medicago truncatula]
Length = 456
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-----HFRKFMRVGPNRWR 62
A+ W R +R+HDN AL +A N ++I + P+Y DP F + GP R
Sbjct: 120 AIVWFRNDLRVHDNEALNTANN------ESISVLPVYCFDPADYGKSSSGFDKTGPYRAS 173
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FL +S++DL + +A GS L V GKPE V ++ K + ++ K + +
Sbjct: 174 FLIESVSDLRKNLKARGSDLVVRVGKPETVLVELAKEIGADAVYCHREVSHDEVKMEEKI 233
Query: 123 EDMAKEYKVKVEQHVSHTLY 142
E KE V+V+ TLY
Sbjct: 234 EGKMKEENVEVKYFWGSTLY 253
>gi|334121002|ref|ZP_08495078.1| Deoxyribodipyrimidine photo-lyase [Microcoleus vaginatus FGP-2]
gi|333455721|gb|EGK84364.1| Deoxyribodipyrimidine photo-lyase [Microcoleus vaginatus FGP-2]
Length = 504
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R+ DN L +A + Q+ + ++ LD + V P R ++ L
Sbjct: 6 LFWHRRDLRISDNIGLATA------RQQSAKVVGIFCLDRNILNRDDVAPARVTYMIGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
L ++R LGS+L ++Q P P + N K + W D+EPYAK+RD V + ++
Sbjct: 60 QKLSSRYRELGSQLLIIQDDPSLGIPKLAIAINAKAVFWNRDVEPYAKQRDLSVSNALQQ 119
Query: 129 YKVKVEQHVSHTLY 142
+KV+ L+
Sbjct: 120 AGIKVQNFWDQVLH 133
>gi|410671657|ref|YP_006924028.1| deoxyribodipyrimidine photo-lyase type I [Methanolobus
psychrophilus R15]
gi|409170785|gb|AFV24660.1| deoxyribodipyrimidine photo-lyase type I [Methanolobus
psychrophilus R15]
Length = 459
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 8/130 (6%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVG--PNRWRFLQ 65
++ R+ +R+ DN L +A+ +E + P +I DP R+G PN ++FL
Sbjct: 8 SIFVFRRDLRIDDNLGLRAAVESSDE------VIPCFIFDPRLASSKRLGFNPNAFQFLL 61
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+SL DL ++F+A G RLY+ G E++ + + D P++++RD +
Sbjct: 62 ESLEDLQRQFKAKGGRLYLFSGIAEDIIGQLAGKLGADAVFVNEDYTPFSRRRDEATRNT 121
Query: 126 AKEYKVKVEQ 135
K VK Q
Sbjct: 122 CKGLDVKFTQ 131
>gi|435850828|ref|YP_007312414.1| deoxyribodipyrimidine photolyase [Methanomethylovorans hollandica
DSM 15978]
gi|433661458|gb|AGB48884.1| deoxyribodipyrimidine photolyase [Methanomethylovorans hollandica
DSM 15978]
Length = 452
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Query: 12 IRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADL 71
R+ +R+ DN L+ A++ + + P +I DP + + N +F+ S+ DL
Sbjct: 9 FRRDLRIDDNTGLIEALHSSHT------VLPCFIFDPRLLEDGKYSKNALQFMLGSIKDL 62
Query: 72 DQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131
+ + ALG RLY+ G P EV + NI + +D P++ RDG + + E+
Sbjct: 63 EAQLNALGGRLYLFSGLPHEVTAKLIGEENIDAVIVNHDYTPFSVHRDGAISAVCAEHGS 122
Query: 132 KVEQHVSHTL 141
+ Q TL
Sbjct: 123 EFHQFHDATL 132
>gi|433602405|ref|YP_007034774.1| Deoxyribodipyrimidine photo-lyase [Saccharothrix espanaensis DSM
44229]
gi|407880258|emb|CCH27901.1| Deoxyribodipyrimidine photo-lyase [Saccharothrix espanaensis DSM
44229]
Length = 455
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 45/121 (37%), Positives = 63/121 (52%), Gaps = 11/121 (9%)
Query: 3 GTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWR 62
G V W R+ +R+ D+PALL+A E+ +N L LY+LDP R G R R
Sbjct: 32 GVDSSTVVWFRRDLRVDDHPALLAAA----ERAKNGL--ALYVLDP--RLLSVAGQPRVR 83
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
F+ + L LD K LG RL VV G P +V P++ ++ + D PY ++RD V
Sbjct: 84 FMFRCLRALDAK---LGGRLMVVSGDPVDVVPEVARSVGASTVHVSADAGPYGRERDAAV 140
Query: 123 E 123
E
Sbjct: 141 E 141
>gi|380513692|ref|ZP_09857099.1| deoxyribodipyrimidine photo-lyase; photolyase [Xanthomonas sacchari
NCPPB 4393]
Length = 473
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RLHD PAL +A++ + P+Y+ P G +LQ+S
Sbjct: 4 AIVWFRRDLRLHDQPALQAALDAGHTP------VPVYLHSPEDEGAWAAGAASRSWLQRS 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD + RA GSRL + QG E + + + + W EP + RD ++ +
Sbjct: 58 LAALDAQLRARGSRLILRQGPAEAALRQVIADCSAEAVYWNRRYEPATQPRDARLKRELR 117
Query: 128 EYKVKVEQHVSHTLY 142
E ++V H S L+
Sbjct: 118 EQGLEVHSHNSALLF 132
>gi|75910490|ref|YP_324786.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
29413]
gi|75704215|gb|ABA23891.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
29413]
Length = 479
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
+ + W R+ +R+ DN L +A + ++ + ++ LDP+ + V P R ++
Sbjct: 3 DLVLFWHRRDLRITDNIGLATARQHSSK------VVGVFCLDPNILERDDVAPVRVTYMI 56
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
SL +L Q++ GS+L +++G P + P + + N K + W +D+EPY++ RD +
Sbjct: 57 GSLQELQQRYVQAGSQLLILRGDPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAIIAT 116
Query: 126 AKEYKVKVEQH 136
K+ ++ H
Sbjct: 117 LKDKGIQCLTH 127
>gi|443310722|ref|ZP_21040364.1| deoxyribodipyrimidine photolyase [Synechocystis sp. PCC 7509]
gi|442779247|gb|ELR89498.1| deoxyribodipyrimidine photolyase [Synechocystis sp. PCC 7509]
Length = 476
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L A E Q ++ ++ LDP+ + V P R ++ L
Sbjct: 6 LFWHRRDLRLSDNTGLAIA----REHSQKVV--GVFCLDPNILERDDVAPVRVTYMMGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
L Q++ +GS L +++G P + P + + N + + W +D+EPY++ RD V D
Sbjct: 60 QHLQQRYTEVGSELLIIKGNPTQAIPALAEILNARGVFWNWDVEPYSQTRDRAVID 115
>gi|440680804|ref|YP_007155599.1| deoxyribodipyrimidine photo-lyase type I [Anabaena cylindrica PCC
7122]
gi|428677923|gb|AFZ56689.1| deoxyribodipyrimidine photo-lyase type I [Anabaena cylindrica PCC
7122]
Length = 478
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R+ D+ L A + Q+ + ++ LDP + + P R ++ L
Sbjct: 8 WHRRDLRISDHTGLAKA------REQSAKVVGVFCLDPDILQRDDIAPARVTYMIGCLQA 61
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L +++ GS+L ++QG P V PD+ K + W +D+EPY++ RD V D E
Sbjct: 62 LQKRYNQAGSQLLILQGNPVSVIPDLAAALQAKAVFWNWDVEPYSQTRDIAVIDSLTEKG 121
Query: 131 VKVEQH 136
++ H
Sbjct: 122 IQFLNH 127
>gi|390945121|ref|YP_006408882.1| deoxyribodipyrimidine photolyase [Belliella baltica DSM 15883]
gi|390418549|gb|AFL86127.1| deoxyribodipyrimidine photolyase [Belliella baltica DSM 15883]
Length = 433
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 7/124 (5%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRKFMRVGPNRWRFL 64
+ ++ W R+ +RL DN L A E+ +N+L PL+I D + K R +F+
Sbjct: 3 KISIFWFRRDLRLEDNTGLFYAF----EQEENVL--PLFIFDKNILDKLEDKKDRRVQFI 56
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
++++ ++ + S + V G P EVF +FK + I+ + D EPYA++RD ++D
Sbjct: 57 YDQISNISEQLKDFESSILVKYGYPLEVFQSLFKEYTIQNIYTNRDYEPYAEERDQSIKD 116
Query: 125 MAKE 128
+AK+
Sbjct: 117 LAKK 120
>gi|390942759|ref|YP_006406520.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Belliella baltica DSM 15883]
gi|390416187|gb|AFL83765.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Belliella baltica DSM 15883]
Length = 472
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 11/138 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK-----FMRVGPNRWRFLQ 65
W R +RLHD+ AL SA+ EK + I+ P+Y DP K F + G +R +FL
Sbjct: 9 WFRNDLRLHDHAALFSAL----EKSEEII--PVYCFDPRMFKETNLGFRKTGNHRAKFLL 62
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
Q++ +L + +GS L ++ G PE++ P K ++ + + ++ K+ + +E+
Sbjct: 63 QAVENLKNNLQKVGSNLLILHGYPEDLIPQKAKELGVQAIYFSEEVTSEEKQVENALENA 122
Query: 126 AKEYKVKVEQHVSHTLYN 143
A + ++ TL+N
Sbjct: 123 AYKLGIETASFWQITLFN 140
>gi|113954039|ref|YP_729488.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9311]
gi|113881390|gb|ABI46348.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9311]
Length = 492
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF----RKFMRVGPNRWRFLQQ 66
W R+ +RL DN L +A + + + +Y+LDP + P R FL +
Sbjct: 9 WHRRDLRLADNLGLQAA------EAISPAVTGVYVLDPALIQPPESLPPMAPARLWFLVE 62
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
SL +L Q++R +GSRL VV G P ++ P + + W D+EPYA++RD
Sbjct: 63 SLRELQQRWRDVGSRLLVVAGDPVQLLPRLASLLEAPAVVWSRDVEPYARERD 115
>gi|218437085|ref|YP_002375414.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
gi|218169813|gb|ACK68546.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
Length = 475
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 69/134 (51%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R+ DN L +A + ++ + ++ LDP + V P R +L L
Sbjct: 6 LFWHRRDLRISDNIGLSTA------RQRSPHVVGIFCLDPDILEKDDVAPARVTYLIGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L Q ++ GS+L +++GKP + P + ++ + + W D+EPYA+ RD V + +E
Sbjct: 60 QELQQNYQQAGSQLLILKGKPSQAIPILAESLKAQAVFWNLDVEPYAQTRDEQVSNALQE 119
Query: 129 YKVKVEQHVSHTLY 142
+ E+ L+
Sbjct: 120 KGIATEKFWDQLLH 133
>gi|428314222|ref|YP_007125199.1| deoxyribodipyrimidine photolyase [Microcoleus sp. PCC 7113]
gi|428255834|gb|AFZ21793.1| deoxyribodipyrimidine photolyase [Microcoleus sp. PCC 7113]
Length = 478
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R+ DN L +A + + + ++ LDP+ + V P R ++ L
Sbjct: 8 WHRRDLRISDNIGLAAA------RASSQKVVGVFCLDPNILERDDVAPARVSYMIGCLQS 61
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L Q + GS+L ++ P + PD+ K + W +D+EPY+K+RD LV D +
Sbjct: 62 LQQGYTQAGSQLLILHDDPCKALPDLAAALKAKAIFWNWDVEPYSKQRDRLVSDALTQKG 121
Query: 131 VKVEQHVSHTLY 142
++V H L+
Sbjct: 122 IEVHHHWDQLLH 133
>gi|33860843|ref|NP_892404.1| DNA photolyase [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
gi|33633785|emb|CAE18744.1| putative DNA photolyase [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 478
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W RK +R+ DN AL+ A + + + YI D ++ W FL SL
Sbjct: 7 LFWHRKDLRIFDNQALIKAFSLSDA------ITSTYIFDKNYSHDFNASSRAW-FLGNSL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L ++ +GSRL + +G P + P + K + K + W IEPY RD +++ KE
Sbjct: 60 QELGNNWKKMGSRLVLEEGDPVLIIPQLAKKIDAKFVFWNRSIEPYEINRDLEIKNNLKE 119
Query: 129 YKVKVEQHVSHTL 141
++V + H L
Sbjct: 120 QNIQVIETWDHLL 132
>gi|257059330|ref|YP_003137218.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
gi|256589496|gb|ACV00383.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
Length = 481
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W RK +R+ DN L A + ++ + ++ D + + + P R +L L
Sbjct: 6 LFWHRKDLRISDNVGLAKA------RQESSKVVGIFCFDSNILERDDIAPARIAYLLGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L Q ++ LGS L +QG+P + P + + + + W D+EPY+++RD V KE
Sbjct: 60 QELQQTYQKLGSNLLFIQGEPSHIIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQALKE 119
Query: 129 YKVKVEQHVSHTLY 142
+K + + L+
Sbjct: 120 QGIKTQTYWDQLLH 133
>gi|33864755|ref|NP_896314.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102]
gi|33632278|emb|CAE06734.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
8102]
Length = 477
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF----RKFMRVGPNRWRFLQQ 66
W R+ +RL DN L +A + +Y+LDP + + P R FL +
Sbjct: 9 WHRRDLRLTDNLGLAAAAAISPA------VTGVYVLDPQVISPSEHLLPMAPARLWFLIE 62
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
SL +L Q++R GSRL VV+G P ++ P + + + + W D+EPYA++RD
Sbjct: 63 SLIELQQRWRDAGSRLLVVEGDPVQLLPQLAERIAAEAVVWNRDVEPYARERD 115
>gi|379731644|ref|YP_005323840.1| deoxyribodipyrimidine photo-lyase [Saprospira grandis str. Lewin]
gi|378577255|gb|AFC26256.1| deoxyribodipyrimidine photo-lyase [Saprospira grandis str. Lewin]
Length = 445
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++ W R+ +RL+DN AL A+ + + D + R+ RV F+ Q
Sbjct: 4 SIFWHRRDLRLNDNAALYQALKAGGPVLSIFIFDQNILEDLNNRQDARVD-----FIHQE 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L L ++ R LGS L V+ G+P+ V+ + + W+I+ + D EPYAKKRD + ++ +
Sbjct: 59 LQRLQKELRELGSDLLVLYGRPQAVWTQLLQDWSIEKVYTNRDYEPYAKKRDAAIAELLQ 118
Query: 128 EYKVKVEQHVSHTLY 142
+ + + H ++
Sbjct: 119 KENIPLLTKKDHVIF 133
>gi|218246283|ref|YP_002371654.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
gi|218166761|gb|ACK65498.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
Length = 481
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W RK +R+ DN L A +K ++ ++ D + + + P R +L L
Sbjct: 6 LFWHRKDLRISDNIGLAKA----RQKSSKVV--GIFCFDSNILEQNDIAPVRIAYLIGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L Q ++ LGS L +QG+P + P + + + + W D+EPY+++RD V KE
Sbjct: 60 QELQQTYQKLGSNLLFIQGEPSHIIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQALKE 119
Query: 129 YKVKVEQHVSHTLY 142
+K + + L+
Sbjct: 120 QGIKTQTYWDQLLH 133
>gi|311748125|ref|ZP_07721910.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
gi|126576610|gb|EAZ80858.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
Length = 432
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPN-RWRFL 64
+ +V W R+ +RL DN L A+ Q + PL+I D + + R F+
Sbjct: 3 KLSVFWFRRDLRLEDNTGLYYALQ------QETDVLPLFIFDRTILDDLEDKTDARVSFI 56
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
+ +L ++ GS L V G PEEV+ ++ K + I+ + D EPYAKKRD +E
Sbjct: 57 HDQIQNLKEELEKKGSTLLVKYGTPEEVYQELIKKFEIQAIYTNRDYEPYAKKRDRAIEK 116
Query: 125 MAKE 128
+A+E
Sbjct: 117 LAEE 120
>gi|119509710|ref|ZP_01628855.1| deoxyribopyrimidine photolyase [Nodularia spumigena CCY9414]
gi|119465576|gb|EAW46468.1| deoxyribopyrimidine photolyase [Nodularia spumigena CCY9414]
Length = 482
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 6/124 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R+ DN L++A E+ ++ ++ LDP V P R ++ L
Sbjct: 6 LFWHRRDLRISDNTGLVAA----RERSAKVV--GVFCLDPQILSRDDVAPARVTYMMGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
L Q++ +GS+L ++ G P EV P + K N K + W +D+EPY++ RD + D+ K
Sbjct: 60 QALQQRYAQVGSQLLILHGNPVEVIPALAKALNAKAVFWNWDVEPYSQTRDRTIIDILKS 119
Query: 129 YKVK 132
++
Sbjct: 120 NSIE 123
>gi|78211765|ref|YP_380544.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9605]
gi|78196224|gb|ABB33989.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605]
Length = 477
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF----RKFMRVGPNRWRFLQQ 66
W R+ +RL DN L+ A + +Y+LDP + + P R FL +
Sbjct: 9 WHRRDLRLADNLGLVVAAQISPA------VTGVYVLDPAVINPPPELPPMAPARLWFLIE 62
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
SL +L Q++R GSRL VV+G P V P + + + + + W D+EPYA+KRD
Sbjct: 63 SLVELQQRWREAGSRLLVVEGDPVAVLPQVAQQISAEAVVWNRDVEPYARKRD 115
>gi|224128470|ref|XP_002320340.1| predicted protein [Populus trichocarpa]
gi|222861113|gb|EEE98655.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-----HFRKFMRV 56
GT + W R +R+HDN L SA N ++ + P+Y DP F +
Sbjct: 81 AGTRRACIVWFRNDLRVHDNECLNSASN------DSMSVLPVYCFDPRDYGKSSSGFDKT 134
Query: 57 GPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAK 116
GP R FL +S++DL + +A GS L V G+PE V ++ K + ++
Sbjct: 135 GPYRANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHREVSHDEV 194
Query: 117 KRDGLVEDMAKEYKVKVEQHVSHTLYN 143
K + +E++ K+ V+V+ TLY+
Sbjct: 195 KAEDKIEEVMKDEGVEVKYFWGSTLYH 221
>gi|110637463|ref|YP_677670.1| deoxyribodipyrimidine photo-lyase type I [Cytophaga hutchinsonii
ATCC 33406]
gi|110280144|gb|ABG58330.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cytophaga hutchinsonii ATCC 33406]
Length = 434
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFR----KFMRVGPNRWR 62
++ W + +RLHDN L+ AI +E + P+Y LD HF+ F + G R +
Sbjct: 4 SIVWFKTDLRLHDNETLVRAIEQSDE------IIPVYCLDEDHFKITPFGFQKTGNFRAQ 57
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FL +SL DLD R LGS L VV+GKPE I K + + + ++ ++ + V
Sbjct: 58 FLLESLNDLDTNLRKLGSGLIVVRGKPETELYKIVKQYEAFKVFAKREVAYEEQQTEARV 117
Query: 123 EDMAKEYKVKVEQHVSHTLYNT 144
E + E + TLY+
Sbjct: 118 EKEIWKLGCTFESFSTSTLYHA 139
>gi|375142760|ref|YP_005003409.1| deoxyribodipyrimidine photolyase [Mycobacterium rhodesiae NBB3]
gi|359823381|gb|AEV76194.1| deoxyribodipyrimidine photolyase [Mycobacterium rhodesiae NBB3]
Length = 430
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 11/114 (9%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RLHD PALL A + NE + Y+LDP + G R ++L +L D
Sbjct: 6 WFRRDLRLHDLPALLDAASADNE------VLACYVLDPRLK--ASSGQRRLKYLYDALRD 57
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
LD+ +L RLYV +G+P++ P + K + D P+ ++RD V +
Sbjct: 58 LDE---SLDGRLYVTRGRPDQRIPKLVKAIGASSVHVSGDFTPFGRRRDDAVRE 108
>gi|428306556|ref|YP_007143381.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
gi|428248091|gb|AFZ13871.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
Length = 474
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R+ DN L A + Q + ++ LDP+ + V P R ++ L
Sbjct: 6 LFWHRRDLRISDNVGLAVA------RQQTQKVVGVFCLDPNILERDDVAPARVTYMIGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
L Q++ +GS L ++ +P P + ++ N K + W +D+EPYAK+RD + KE
Sbjct: 60 ESLQQRYAEVGSELLILFNEPTTAIPKLAESLNAKAVFWNWDVEPYAKERDRTILAALKE 119
Query: 129 YKVKVEQHVSHTLYN 143
+ + L++
Sbjct: 120 KGIATQNFWDQLLHS 134
>gi|428220832|ref|YP_007105002.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 7502]
gi|427994172|gb|AFY72867.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 7502]
Length = 481
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++ W R+ +RL DNPAL A N + I +I DP K G + F+
Sbjct: 5 SIVWHRRDLRLQDNPALAKAAVIPNSETVGI-----FIFDPDILKSPETGGGKVDFMLGC 59
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
L +L Q +R LGS L G P+EV + + + L + D+EP A KRD V
Sbjct: 60 LKELQQSYRELGSELLCFYGNPKEVLAKLAQVLKPQRLFFNQDVEPSAIKRDQAV 114
>gi|428776176|ref|YP_007167963.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
gi|428690455|gb|AFZ43749.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
Length = 477
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 11/135 (8%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L A + N+ + ++ DP + +V P R ++L L
Sbjct: 6 LFWHRRDLRLDDNIGLNEAQQHSNK------IVGVFCFDPKLLQSDQVAPARIKYLLGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L ++ GS L +Q P P + +T N + W +D+EPY +KRD V+ +
Sbjct: 60 KELAAGYKKAGSELLFLQADPVTAIPKLAETLNASAVFWNHDVEPYGRKRDRAVQSALEA 119
Query: 129 YKVKVEQHVSHTLYN 143
+ V HT+++
Sbjct: 120 KNIPV-----HTVWD 129
>gi|157412647|ref|YP_001483513.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9215]
gi|157387222|gb|ABV49927.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9215]
Length = 478
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W RK +R+ DN AL AI+ N + YI D ++ W FL SL
Sbjct: 7 LFWYRKDLRIFDNQALNKAISLSNA------ITSTYIFDENYSHDFNANSRAW-FLANSL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L + +GSRL + +G P + P + K + K + W IEPY RD ++ KE
Sbjct: 60 QELGNNWNKMGSRLVIEKGDPILIIPQLAKLIDAKFVFWNKSIEPYEINRDLKIKKNLKE 119
Query: 129 YKVKVEQHVSHTL 141
++ + H L
Sbjct: 120 KNIQFIESWDHLL 132
>gi|126665353|ref|ZP_01736335.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
gi|126629981|gb|EBA00597.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
Length = 441
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 12/94 (12%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK-----FMRVGPNRWR 62
++W + +RLHDN ALL+A ++ +L +Y+++P + K +G +RWR
Sbjct: 3 TLYWFTRDLRLHDNAALLAA-------SKSDMLLCVYVVEPRWFKPGPLQCKTMGHHRWR 55
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDI 96
FL QSL L++ RALG RL++ G PE V P +
Sbjct: 56 FLWQSLIGLERSLRALGQRLHIAWGDPETVIPAL 89
>gi|186682403|ref|YP_001865599.1| DNA photolyase [Nostoc punctiforme PCC 73102]
gi|186464855|gb|ACC80656.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
Length = 481
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 6/122 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R+ DN L +A K ++ + ++ LDPH + V P R ++ L
Sbjct: 8 WHRRDLRISDNTGLAAA------KRRSPKVVGVFCLDPHILERDDVAPVRVTYMIGCLQK 61
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L +++ +GS+L ++ P + P + + N K + W +D+EPY+++RD + + KE
Sbjct: 62 LQERYAQVGSQLLILHADPVQAIPALAEAINAKAVFWNWDVEPYSQERDRTIINALKEKG 121
Query: 131 VK 132
++
Sbjct: 122 IE 123
>gi|346975848|gb|EGY19300.1| cryptochrome-1 [Verticillium dahliae VdLs.17]
Length = 652
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W R +RLHD+PAL + + L + + N+ R Q+
Sbjct: 7 IYWFRTDLRLHDSPALDGGAGARAGGAVALCLHGIRTTS---SDSCVLAANQCRLDCQN- 62
Query: 69 ADLDQKFRALG--SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
DL L S+L+V++ P+ +FP +FK W + L +E D + Y ++RDG+V A
Sbjct: 63 -DLSASITKLNPKSKLFVLREGPQTLFPKLFKAWKVTHLVFEKDTDSYGRERDGVVVAAA 121
Query: 127 KEYKVKVEQHVSHTLYNTN 145
+E V+V TL++++
Sbjct: 122 REAGVEVIMRSGRTLWDSD 140
>gi|374598111|ref|ZP_09671113.1| DNA photolyase FAD-binding [Myroides odoratus DSM 2801]
gi|423323552|ref|ZP_17301394.1| hypothetical protein HMPREF9716_00751 [Myroides odoratimimus CIP
103059]
gi|373909581|gb|EHQ41430.1| DNA photolyase FAD-binding [Myroides odoratus DSM 2801]
gi|404609317|gb|EKB08700.1| hypothetical protein HMPREF9716_00751 [Myroides odoratimimus CIP
103059]
Length = 434
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRKFMRVGPNRWRFL 64
E + W R+ +RLHDN L AI + G+ +L P++I DP +F R ++
Sbjct: 3 EIVIFWFRRDIRLHDNVGLYHAI----QSGKKVL--PIFIFDPAILAQFPAQEDRRIPYI 56
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
Q+LA +D + L S++ +VF + +T I + D EP A+KRD V+
Sbjct: 57 YQALAQVDSHLQQLNSQVVCYHDHVLDVFKQLIETHAIAAVYTNADYEPAARKRDAAVQA 116
Query: 125 MAKEYKVKVEQHVSHTLYNTN 145
+ E+ + + ++ N
Sbjct: 117 LVAEHAIAFYAYKDQVIFEAN 137
>gi|224068346|ref|XP_002302716.1| predicted protein [Populus trichocarpa]
gi|222844442|gb|EEE81989.1| predicted protein [Populus trichocarpa]
Length = 471
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRV 56
GT + W R +R+HDN L SA N ++L P+Y DP F +
Sbjct: 120 AGTRRACIVWFRNDLRVHDNECLNSA----NNDSMSVL--PVYCFDPRDYGKSSSGFDKT 173
Query: 57 GPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAK 116
GP R FL +S++DL + +A GS L V G+PE V ++ K + ++
Sbjct: 174 GPYRANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHREVSHDEV 233
Query: 117 KRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
K + +E++ K+ V+V+ TLY+ +
Sbjct: 234 KAEEKIEELMKDEGVEVKYFWGSTLYHLD 262
>gi|406662895|ref|ZP_11070977.1| Cryptochrome DASH [Cecembia lonarensis LW9]
gi|405553063|gb|EKB48369.1| Cryptochrome DASH [Cecembia lonarensis LW9]
Length = 474
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 15/143 (10%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRV-------GPNR 60
+ W R +R+HD+ L Y ++K + ++ P+Y DP R F +V G +R
Sbjct: 5 VIVWFRNDLRVHDHAPLF----YASQKAEEVI--PVYCFDP--RNFGKVNLEIDKTGNHR 56
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
RFL +S+ +L LG L ++QGKPEE+ DI K + + + + ++ KK +
Sbjct: 57 ARFLIESVDNLKNNLVNLGGDLVILQGKPEELLVDIAKKYQVDAIFFSEEVTSEEKKVEL 116
Query: 121 LVEDMAKEYKVKVEQHVSHTLYN 143
+E A ++ +K + +LYN
Sbjct: 117 NLEGHAWKHGIKTTAYWQSSLYN 139
>gi|358451749|ref|ZP_09162182.1| DNA photolyase FAD-binding subunit [Marinobacter manganoxydans
MnI7-9]
gi|357224218|gb|EHJ02750.1| DNA photolyase FAD-binding subunit [Marinobacter manganoxydans
MnI7-9]
Length = 440
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 12/101 (11%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF-----RKFMRVGPNRWR 62
++W + +RLHDN +LL+A ++ +L LY++DP + + +G +RWR
Sbjct: 3 TLYWFTRDLRLHDNASLLAA-------SKSDMLLCLYVVDPRWFAPGPLQSKAMGDHRWR 55
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIK 103
FL QSL L++ R LG RL++ G+PE V P + +I+
Sbjct: 56 FLWQSLMALERSLRTLGQRLHIAFGEPETVIPQLAHAHSIE 96
>gi|297824863|ref|XP_002880314.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata]
gi|297326153|gb|EFH56573.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata]
Length = 448
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-----HFRKFMRVGPNRWRFLQ 65
W R +R+HDN L SA N++ ++L P+Y DP F + GP R +FL
Sbjct: 121 WFRNDLRVHDNECLNSA----NDECVSVL--PVYCFDPRDYGKSSSGFDKTGPFRAQFLI 174
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+++L + +A GS L V GKPE V ++ K + ++ K +G +E
Sbjct: 175 ESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIESA 234
Query: 126 AKEYKVKVEQHVSHTLY 142
KE V+V+ TLY
Sbjct: 235 MKEEGVEVKYFWGSTLY 251
>gi|113477930|ref|YP_723991.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
gi|110168978|gb|ABG53518.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
Length = 498
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 11/142 (7%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRF 63
+ W R +R+HD+ L A+ N + P+Y LDP F + F + G R +F
Sbjct: 7 ILWYRNDLRIHDHEPLYKALKV------NAQIIPIYCLDPRQFSQTDFGFPKTGVFRAKF 60
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L +S+ADL + LGS L + Q KPE V P + + + K + + ++ K + LV
Sbjct: 61 LLESIADLRNNLQKLGSNLVIFQDKPEIVIPRLAQQLSAKSVFFHQEVTELEVKVERLVH 120
Query: 124 DMAKEYKVKVEQHVSHTLYNTN 145
K+ V+++ HTLY+ +
Sbjct: 121 QALKQIGVRLKSFWGHTLYHPD 142
>gi|118484811|gb|ABK94273.1| unknown [Populus trichocarpa]
Length = 457
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRV 56
GT + W R +R+HDN L SA N ++L P+Y DP F +
Sbjct: 120 AGTRRACIVWFRNDLRVHDNECLNSA----NNDSMSVL--PVYCFDPRDYGKSSSGFDKT 173
Query: 57 GPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAK 116
GP R FL +S++DL + +A GS L V G+PE V ++ K + ++
Sbjct: 174 GPYRANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHREVSHDEV 233
Query: 117 KRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
K + +E++ K+ V+V+ TLY+ +
Sbjct: 234 KAEEKIEELMKDEGVEVKYFWGSTLYHLD 262
>gi|87123064|ref|ZP_01078915.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917]
gi|86168784|gb|EAQ70040.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917]
Length = 493
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN L +A+ ++L P IL P W FL +SL +
Sbjct: 9 WHRRDLRLADNTGLQAAVGLGPAVTGVVVLDPA-ILSPPPHLPPMAPARLW-FLVESLIE 66
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
L Q++R GSRL VV G P V P + + + W D+EPYA++RD V
Sbjct: 67 LQQRWREAGSRLLVVAGDPATVLPRLASLLDAPAVVWSRDVEPYARERDRAV 118
>gi|284046106|ref|YP_003396446.1| deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
gi|283950327|gb|ADB53071.1| Deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
Length = 476
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
T A+ W R+ +RLHD+P L+ A+ + + P+++LDP + R F
Sbjct: 2 TDSTAIVWFRRDLRLHDHPPLVRAL------AAHARVVPVFVLDPAIVRGRFASGARTAF 55
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
+ L +LD R GS L V +G+PE P + + + W D PYA RD
Sbjct: 56 MLDCLRELDADLRERGSGLVVREGRPERELPALAREIGAAAVHWASDATPYAIARD 111
>gi|113474888|ref|YP_720949.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
gi|110165936|gb|ABG50476.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
Length = 474
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 71/135 (52%), Gaps = 6/135 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R+ DN L A +++GQ ++ ++ LD + K + R ++ L
Sbjct: 6 LFWHRRDLRISDNVGLTQA----SQEGQTVV--GIFCLDENILKRDDIASARVTYMIGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
L ++++ +GS+L ++ GKP E P + K + W D+EPY++KRD V++ +
Sbjct: 60 QHLQKRYKQIGSQLLIMSGKPIEAIPKLATFLEAKAVYWNLDVEPYSRKRDRQVKENLEA 119
Query: 129 YKVKVEQHVSHTLYN 143
++V+ L++
Sbjct: 120 ANIQVKTFWEQLLHS 134
>gi|87120903|ref|ZP_01076795.1| putative photolyase [Marinomonas sp. MED121]
gi|86163741|gb|EAQ65014.1| putative photolyase [Marinomonas sp. MED121]
Length = 475
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 12/135 (8%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILD-PHFRKFMRVGPNRWRFLQQS 67
+HW R+ +RL DNPAL +A++ + + P+YILD + +F G +RW +L S
Sbjct: 7 IHWFRQDLRLSDNPALSAAVSQGD-------VLPIYILDDKNANEFAMGGASRW-WLHHS 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L LD A L + +G+P EV ++ + ++ + W EP+ +RD ++ K
Sbjct: 59 LTALDASLTAC---LNLYKGEPLEVLLELIERLDVTHVVWNRCYEPWRMQRDEKIKQTLK 115
Query: 128 EYKVKVEQHVSHTLY 142
E ++V+ + + L+
Sbjct: 116 EIGIQVQSYNASLLW 130
>gi|150025093|ref|YP_001295919.1| deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
psychrophilum JIP02/86]
gi|149771634|emb|CAL43108.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
psychrophilum JIP02/86]
Length = 428
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L A+N Q IL P++I D + + R F+ + L
Sbjct: 3 IFWFRRDLRLDDNVGLFHALN----SDQTIL--PIFIFDYNILSQLSKDDARVTFIHELL 56
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
+ + +K + G L V GKP E+F + +K + +D EPYA+KRD
Sbjct: 57 SKMQKKLQEKGKSLAVFYGKPSEIFEKLISENKVKTIYTNHDYEPYARKRD 107
>gi|321453625|gb|EFX64843.1| hypothetical protein DAPPUDRAFT_333781 [Daphnia pulex]
Length = 179
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 55 RVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLT 106
+VGPNRWRFL QSL DL+ + +GS L++++ P E+F FK WNIK LT
Sbjct: 12 KVGPNRWRFLIQSLQDLNDNLKKIGSCLFLLKESPTEMFKKYFKEWNIKKLT 63
>gi|298490155|ref|YP_003720332.1| deoxyribodipyrimidine photo-lyase ['Nostoc azollae' 0708]
gi|298232073|gb|ADI63209.1| Deoxyribodipyrimidine photo-lyase ['Nostoc azollae' 0708]
Length = 479
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R+ DN L++A + Q+ + ++ LDP V P R +++ L
Sbjct: 8 WHRRDLRISDNTGLIAA------REQSSKIVGVFCLDPCILNSDDVAPARIKYMMGCLQS 61
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L++++ GS+L ++ P V P + + +K + W +D+EPYA+ RD V + +E
Sbjct: 62 LEKQYTQAGSQLVILYDNPIAVIPALAEALKVKAVFWNWDVEPYAQIRDNDVICVLREKG 121
Query: 131 VKV 133
++
Sbjct: 122 IQT 124
>gi|443475122|ref|ZP_21065081.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
gi|443020045|gb|ELS34048.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
Length = 489
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 3/132 (2%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
+ A+ W R+ +R+ DNPAL AI ++G+ + L+I DP ++ F+
Sbjct: 18 QIALVWHRRDLRIDDNPALSEAIAQVGDQGKVL---GLFIFDPDILDDGVTEGSKVDFML 74
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
L +L +R LGS L + G+P + K N L + D+EP+A KRD
Sbjct: 75 GCLRELQTNYRRLGSDLLFMYGEPITSLCSLAKAINTSHLFFNQDVEPFAIKRDREATQA 134
Query: 126 AKEYKVKVEQHV 137
+E VKV+ V
Sbjct: 135 LQEIGVKVQSFV 146
>gi|385333757|ref|YP_005887708.1| deoxyribodipyrimidine photolyase [Marinobacter adhaerens HP15]
gi|311696907|gb|ADP99780.1| deoxyribodipyrimidine photolyase [Marinobacter adhaerens HP15]
Length = 440
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 12/101 (11%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF-----RKFMRVGPNRWR 62
++W + +RLHDN +LL+A ++ +L LY++DP + + +G +RWR
Sbjct: 3 TLYWFTRDLRLHDNASLLAA-------SKSDMLLCLYVVDPRWFAPGPLQSKAMGDHRWR 55
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIK 103
FL QSL L++ R LG RL++ G+PE V P + +I+
Sbjct: 56 FLWQSLMALERSLRPLGQRLHIAFGEPETVIPQLAHAHSIE 96
>gi|21592984|gb|AAM64933.1| photolyase/blue-light receptor PHR2 [Arabidopsis thaliana]
Length = 447
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-----HFRKFMRVGPNRWRFLQ 65
W R +R+HDN L SA N++ ++L P+Y DP F + GP R +FL
Sbjct: 120 WFRNDLRVHDNECLNSA----NDECVSVL--PVYCFDPRDYGKSSSGFDKTGPFRAQFLI 173
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+++L + +A GS L V GKPE V ++ K + ++ K +G +E
Sbjct: 174 ESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETA 233
Query: 126 AKEYKVKVEQHVSHTLY 142
KE V+V+ TLY
Sbjct: 234 MKEEGVEVKYFWGSTLY 250
>gi|409991103|ref|ZP_11274395.1| DASH family cryptochrome [Arthrospira platensis str. Paraca]
gi|291567701|dbj|BAI89973.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
gi|409938041|gb|EKN79413.1| DASH family cryptochrome [Arthrospira platensis str. Paraca]
Length = 490
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMR 55
M P+ + W R +RLHD+ L A + +GQ I PLY DP F K F +
Sbjct: 1 MAANPQKIILWYRNDLRLHDHEPLDLATS---TQGQII---PLYCFDPRQFAKTSFGFPK 54
Query: 56 VGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYA 115
G R +FL +S+ADL F+ +GS L V G+PE V D+ K NI + + ++
Sbjct: 55 TGGFRGKFLLESVADLRHNFQKIGSNLLVRIGEPERVIFDLVKQLNIDAVYYHKEVTAEE 114
Query: 116 KKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
+ +E V+V+ TLY+
Sbjct: 115 LAVETALEKALTPLGVEVKSFWGATLYH 142
>gi|15226633|ref|NP_182281.1| photolyase/blue-light receptor 2 [Arabidopsis thaliana]
gi|116248577|sp|Q8LB72.2|PHR2_ARATH RecName: Full=Blue-light photoreceptor PHR2
gi|2529668|gb|AAC62851.1| photolyase/blue-light receptor (PHR2) [Arabidopsis thaliana]
gi|3319288|gb|AAC26199.1| photolyase/blue light photoreceptor PHR2 [Arabidopsis thaliana]
gi|115646759|gb|ABJ17108.1| At2g47590 [Arabidopsis thaliana]
gi|330255768|gb|AEC10862.1| photolyase/blue-light receptor 2 [Arabidopsis thaliana]
Length = 447
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-----HFRKFMRVGPNRWRFLQ 65
W R +R+HDN L SA N++ ++L P+Y DP F + GP R +FL
Sbjct: 120 WFRNDLRVHDNECLNSA----NDECVSVL--PVYCFDPRDYGKSSSGFDKTGPFRAQFLI 173
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+++L + +A GS L V GKPE V ++ K + ++ K +G +E
Sbjct: 174 ESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETA 233
Query: 126 AKEYKVKVEQHVSHTLY 142
KE V+V+ TLY
Sbjct: 234 MKEEGVEVKYFWGSTLY 250
>gi|92429536|gb|ABD93512.2| DNA photolyase protein [Coffea canephora]
Length = 189
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-----HFRKFMRVGPNRWRFLQ 65
W R +R+HDN L SA N +++ + P+Y DP F + GP R FL
Sbjct: 1 WFRNDLRVHDNECLNSANN------ESMSVLPVYCFDPRDYGKSSSGFDKTGPFRATFLL 54
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+ADL + +A GS L V GKPE V ++ + + + ++ K + +E +
Sbjct: 55 ESVADLRKTLQAKGSDLVVRIGKPETVLVELAQAVGAEAVYAHREVSHDEVKAEDNIEAV 114
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
KE V+V+ TLY+ +
Sbjct: 115 LKEEGVEVKYFWGSTLYHID 134
>gi|448565168|ref|ZP_21636139.1| deoxyribodipyrimidine photolyase, partial [Haloferax prahovense DSM
18310]
gi|445715827|gb|ELZ67580.1| deoxyribodipyrimidine photolyase, partial [Haloferax prahovense DSM
18310]
Length = 151
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----------FRKFMRV 56
++ W R+ +RLHDN AL +A + + P+Y LDP F +
Sbjct: 6 SLAWFRRDLRLHDNEALAAACDADG-------VLPVYCLDPREYGDRPFGGSDSFDFDKT 58
Query: 57 GPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAK 116
G +R RF +SL+DL R GS L V +G PE V P++ T + +T P
Sbjct: 59 GAHRARFRLESLSDLRASLRDRGSDLVVREGTPESVLPELAATVDADFVTVHTRPTPEES 118
Query: 117 KRDGLVEDMAKEYKVKVEQHVSHTLYNT 144
+ VE ++ V + + LY +
Sbjct: 119 SVESAVERGLRDDGVDLRRFWGCLLYTS 146
>gi|443318941|ref|ZP_21048182.1| cryptochrome, DASH family [Leptolyngbya sp. PCC 6406]
gi|442781475|gb|ELR91574.1| cryptochrome, DASH family [Leptolyngbya sp. PCC 6406]
Length = 494
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRFLQ 65
W+R +RLHD+ L +A+ + G ++ P+Y LDP F + F + G R +FL
Sbjct: 6 WLRNDLRLHDHAPLQAAL----KTGAQVI--PVYCLDPRQFGQTDFGFPKTGAFRAQFLL 59
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
++LADL Q R LG L V QG PE+V P + + + W ++ P + +
Sbjct: 60 EALADLRQSLRRLGGDLVVRQGFPEQVLPALAREVKCDRVYWHREVTPEETTVESALTRT 119
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
V V+ TLY+ +
Sbjct: 120 LATQGVAVQHFWGATLYHPD 139
>gi|318042779|ref|ZP_07974735.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0101]
Length = 510
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN L +A +++LDP + P R FL +SL +
Sbjct: 9 WHRRDLRLADNLGLATAAAATPAV------TGVFVLDPAILGAPDMAPARVWFLLESLRE 62
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYA 115
L Q +R GSRL+V++G PE+V P + + ++ W D+EPY
Sbjct: 63 LQQSWREAGSRLFVLEGDPEQVLPQLAEALAAPVVAWNRDVEPYG 107
>gi|427420013|ref|ZP_18910196.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 7375]
gi|425762726|gb|EKV03579.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 7375]
Length = 482
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R+ DN L +A E+ ++ + LDP + V P R ++ +
Sbjct: 6 LFWHRRDLRISDNLGLAAA----RERSPKVV--GFFCLDPGILEADDVAPARVAYMLGCV 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
A L ++++A+GS L +++G P E P T + W D+EPY+++RD V E
Sbjct: 60 AQLQERYQAVGSELLILKGNPVEQIPQTASTLGAMAVYWNRDVEPYSRQRDNAVAAALTE 119
Query: 129 YKVKV 133
+++
Sbjct: 120 KGIEM 124
>gi|332711249|ref|ZP_08431182.1| deoxyribodipyrimidine photo-lyase type I [Moorea producens 3L]
gi|332350063|gb|EGJ29670.1| deoxyribodipyrimidine photo-lyase type I [Moorea producens 3L]
Length = 474
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R+ DN L +A + L ++ LDP + + P R ++ L
Sbjct: 6 LFWHRRDLRISDNVGLAAAFELSPK------LVGVFCLDPTILERDDIAPARVTYMIGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
L Q +R GS+L ++ P + P++ K + W +D+EPY+K+RD V KE
Sbjct: 60 EQLQQGYRQAGSQLLILHQDPRQGIPNLAAALEAKAVCWNWDVEPYSKERDQDVAAGLKE 119
Query: 129 YKVKVEQHVSHTLY 142
+ V + L+
Sbjct: 120 KGIAVYNYWDQLLH 133
>gi|87304172|ref|ZP_01086694.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
gi|87281427|gb|EAQ73501.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
Length = 180
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 12/101 (11%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF-----RKFMRVGPNRWR 62
++W + +RLHDN +LL+A ++ +L LY++DP + + +G +RWR
Sbjct: 3 TLYWFTRDLRLHDNASLLAA-------SKSDMLLCLYVVDPRWFAPGPLQSKAMGDHRWR 55
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIK 103
FL QSL L++ R LG RL++ G+PE V P + +I+
Sbjct: 56 FLWQSLMALERSLRPLGQRLHIAFGEPETVIPQLAHAHSIE 96
>gi|317968588|ref|ZP_07969978.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205]
Length = 479
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN L +A + + +++LDP + P R FL +SL +
Sbjct: 9 WHRRDLRLVDNLGLAAA------AAATLAVTGVFVLDPAILSAADMAPARVWFLLESLKE 62
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
L +R GS+L ++QG P EV P + K ++ W D+EPY ++RD
Sbjct: 63 LQASWRKAGSQLLLLQGDPAEVLPQLAKAIGAGVVAWNRDVEPYGRERD 111
>gi|159469690|ref|XP_001692996.1| CPH-like protein [Chlamydomonas reinhardtii]
gi|158277798|gb|EDP03565.1| CPH-like protein [Chlamydomonas reinhardtii]
Length = 443
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 21/106 (19%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRK------------ 52
+ A+ W R +RLHDNPAL A Q+ + P+Y+ DP + K
Sbjct: 42 KAALVWFRNDLRLHDNPALEQACR------QSSSVLPVYVFDPRDYGKAGYSVCLLPQTP 95
Query: 53 --FMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDI 96
F R GP R RFL +++ADL Q+ R GS L V G+PE V ++
Sbjct: 96 SGFDRTGPGRARFLLEAVADLRQRLRDAGSDLVVRLGRPEAVLKEL 141
>gi|407781615|ref|ZP_11128833.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
gi|407207832|gb|EKE77763.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
Length = 497
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVG-PNRWRFLQQSLA 69
W R+ +RL DNPAL +A+ E GQ IL P+YILD +G RW +L SL
Sbjct: 25 WFRQDLRLADNPALRAAV----ESGQPIL--PVYILDDETPGAWAIGGAARW-WLHHSLT 77
Query: 70 DLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEY 129
L +ALG+ L + +G EV + + + W EP+A+KRD ++ K+
Sbjct: 78 ALSHDLKALGAPLILRRGDSREVIDSLVREAGATAVYWNRCYEPFARKRDEAIKATLKQD 137
Query: 130 KVKVEQHVSHTLY 142
++ S L+
Sbjct: 138 GIEARSFNSALLH 150
>gi|428770667|ref|YP_007162457.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
gi|428684946|gb|AFZ54413.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
Length = 473
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R++DN L A Y +K + ++ LDP+ + P R ++L L
Sbjct: 3 IFWHRRDLRINDNIGLAKA--YTRDKK----VIGVFCLDPNILNRDDIAPARVKYLLGCL 56
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
L K++ LGS L + PEE+ P + + + W D+EP+++ RD V KE
Sbjct: 57 EALKTKYQKLGSDLLIFHNTPEEIIPSLAEKLKADAVYWNLDVEPFSRHRDKNVSQALKE 116
Query: 129 YKVKVEQHVSHTLYN 143
++ + L++
Sbjct: 117 KSIETQTFWDQLLHS 131
>gi|126695647|ref|YP_001090533.1| DNA photolyase [Prochlorococcus marinus str. MIT 9301]
gi|126542690|gb|ABO16932.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9301]
Length = 478
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W RK +R+ DN +L+ A + N + YI D ++ W FL SL
Sbjct: 7 LFWHRKDLRIFDNQSLIKAFSLSNA------ITSTYIFDKNYPHDFNANSRAW-FLGNSL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L ++ +GSRL + +G P + P + K + K + W IEPY RD ++ +E
Sbjct: 60 QELGNNWKKMGSRLIMEEGDPVLIIPQLAKKIDAKFVFWNKSIEPYEINRDLKIKKNLEE 119
Query: 129 YKVKVEQHVSHTL 141
++V + H L
Sbjct: 120 QNIQVIETWDHLL 132
>gi|109896483|ref|YP_659738.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c]
gi|109698764|gb|ABG38684.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudoalteromonas atlantica T6c]
Length = 445
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 5 PECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFL 64
P+ + W R +RLHDNPAL++ +E ++ P + HF+ +G RW FL
Sbjct: 9 PKRGIFWFRHDLRLHDNPALVALSEQVDELLCVFIIDPRWFKSSHFQS-AHMGDKRWAFL 67
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLT 106
QQSL++L + + G +L+V++G+ EV + ++ ++
Sbjct: 68 QQSLSELQRHLQEQGQQLFVLEGETLEVLDALIGSYTPDIVA 109
>gi|170079261|ref|YP_001735899.1| DNA photolyase [Synechococcus sp. PCC 7002]
gi|169886930|gb|ACB00644.1| DNA photolyase [Synechococcus sp. PCC 7002]
Length = 514
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF-----RKFMRVGPNRWRFLQ 65
W R+ +RLHD+ L A+ Q + P Y DP F + G R +FL+
Sbjct: 9 WYRRDLRLHDHQPLQEAL------AQQAQIFPFYCFDPRGFGSIGLDFPKTGAFRGQFLR 62
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+++ DL Q RA GS L V Q PE++ PD+ + W I ++ ++ + + +
Sbjct: 63 EAIQDLRQNLRAKGSDLIVRQDIPEKLIPDLCQQWQIDVVYCHREVTAEETRVERKLRQA 122
Query: 126 AKEYKVKVEQHVSHTLYN 143
+E V+VE TL++
Sbjct: 123 LQEQGVRVETFWGTTLHD 140
>gi|375148275|ref|YP_005010716.1| deoxyribodipyrimidine photo-lyase [Niastella koreensis GR20-10]
gi|361062321|gb|AEW01313.1| Deoxyribodipyrimidine photo-lyase [Niastella koreensis GR20-10]
Length = 435
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 7/138 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRKFMRVGPNRWRFLQQS 67
+ W R+ +RL DN L A+ KG N +L P++I D + + R F+ +
Sbjct: 6 IFWFRRDLRLDDNAGLYHAL-----KGNNPVL-PIFIFDTNILDQLPNTSDARVEFIHDA 59
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L + ++ + LGS L V+ P F + K + I+ + +D EPYA++RD + +
Sbjct: 60 LTGMQEQLKELGSTLDVLHDTPLNAFKKLVKQYTIEAVYTNHDYEPYAQERDNRIARFLE 119
Query: 128 EYKVKVEQHVSHTLYNTN 145
E+ + + ++ N
Sbjct: 120 EHGIAFHTYKDQVIFEKN 137
>gi|374289278|ref|YP_005036363.1| putative deoxyribodipyrimidine photolyase [Bacteriovorax marinus
SJ]
gi|301167819|emb|CBW27403.1| putative deoxyribodipyrimidine photolyase [Bacteriovorax marinus
SJ]
Length = 434
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
+ ++ W R+ +R+ DN L A+N + + P++I D + + +R F+
Sbjct: 7 KVSIFWFRRDLRVEDNIGLYHALN------SSFPVLPIFIFDKNILNKLERDDSRVSFIH 60
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+ L +L +KFR L P+ + +IF++++++ + D EPYA RD +ED
Sbjct: 61 ECLQNLSEKFRKYDGDLLTFYNSPKNAWKEIFESFDVQEVYTNEDYEPYALSRDKSIEDY 120
Query: 126 AKEYKVKVEQHVSHTLYN 143
+K + + +++
Sbjct: 121 LTRKGIKFQSYKDQCIFS 138
>gi|428320773|ref|YP_007118655.1| deoxyribodipyrimidine photo-lyase type I [Oscillatoria
nigro-viridis PCC 7112]
gi|428244453|gb|AFZ10239.1| deoxyribodipyrimidine photo-lyase type I [Oscillatoria
nigro-viridis PCC 7112]
Length = 484
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 6/142 (4%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR 60
M + W R+ +R+ DN L +A + Q+ + ++ LD + V P R
Sbjct: 1 MSDISNLILFWHRRDLRISDNIGLAAA------RQQSPKVVGIFCLDRNILNRDDVAPAR 54
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
++ L L ++R GS+L ++Q P P + N + + W +D+EPYAK+RD
Sbjct: 55 VTYMIGCLQKLSSRYREAGSQLLIIQDDPILGIPKLATAINAQAVFWNWDVEPYAKQRDR 114
Query: 121 LVEDMAKEYKVKVEQHVSHTLY 142
V + ++ ++V+ L+
Sbjct: 115 SVSNALQQAGIQVQNFWDQVLH 136
>gi|327402941|ref|YP_004343779.1| Deoxyribodipyrimidine photo-lyase [Fluviicola taffensis DSM 16823]
gi|327318449|gb|AEA42941.1| Deoxyribodipyrimidine photo-lyase [Fluviicola taffensis DSM 16823]
Length = 434
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 6/137 (4%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
+ A+ W R+ +R+ DN L A+ + ++ ++I D + R F+
Sbjct: 3 QLALFWHRRDLRISDNAGLYKALK------SGLKVQAIFIFDSQILAHLSKNDQRVLFIH 56
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
Q++ +L Q ++ LG+ L++ G P E+ P + + IK + D EP A KRD V D
Sbjct: 57 QTIQNLQQAYQKLGASLWIFHGNPTEIIPQLVQKHEIKHVFCNRDYEPNALKRDKSVYDA 116
Query: 126 AKEYKVKVEQHVSHTLY 142
+ + H ++
Sbjct: 117 LTKIGCQFSGSKDHVIF 133
>gi|440749032|ref|ZP_20928282.1| Cryptochrome [Mariniradius saccharolyticus AK6]
gi|436482734|gb|ELP38832.1| Cryptochrome [Mariniradius saccharolyticus AK6]
Length = 475
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 75/142 (52%), Gaps = 11/142 (7%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRKF----MRVGPNRWRF 63
+ W R +R+HDN L A EK + ++ P+Y DP HF + ++G R +F
Sbjct: 7 IVWFRNDLRIHDNVTLSMAC----EKAEEVI--PVYCFDPRHFGEIDLGMEKMGNLRAKF 60
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L++++++L Q + LG+ L V+QG PE+ P++ + + + + ++ K+ D +E
Sbjct: 61 LKETVSELRQNLQKLGADLVVLQGFPEKEIPNLAVSLQAEAIFFSEEVTDEEKQVDDALE 120
Query: 124 DMAKEYKVKVEQHVSHTLYNTN 145
A + +K HTL++ +
Sbjct: 121 STAWKKGIKTRSFWQHTLFHID 142
>gi|147791052|emb|CAN68022.1| hypothetical protein VITISV_003623 [Vitis vinifera]
Length = 212
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 12/144 (8%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRVGPNRW 61
C V W R +R+HDN L SA N +++ + P+Y DP F + GP R
Sbjct: 5 CXV-WFRNDLRVHDNECLNSASN------ESMSMLPVYCFDPRDYGKSSSGFDKTGPYRA 57
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
FL +S++DL Q + GS L V GKPE V ++ K + ++ K +
Sbjct: 58 SFLIESVSDLRQNLQKRGSDLVVRIGKPETVLVELAKAVGADAIYAHREVSHDEVKGEEK 117
Query: 122 VEDMAKEYKVKVEQHVSHTLYNTN 145
+E KE V+ + TLY+ +
Sbjct: 118 IEAAMKEEGVEXKYFWGSTLYHVD 141
>gi|424843384|ref|ZP_18268009.1| deoxyribodipyrimidine photolyase [Saprospira grandis DSM 2844]
gi|395321582|gb|EJF54503.1| deoxyribodipyrimidine photolyase [Saprospira grandis DSM 2844]
Length = 445
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++ W R+ +RL+DN AL A+ + + D + R+ RV F+ Q
Sbjct: 4 SIFWHRRDLRLNDNAALYQALKAGGPVLSIFIFDQNILEDLNNRQDARVS-----FIHQE 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L L ++ + LGS L V+ G+P+ V+ + + W I + D EPYAKKRD V ++ +
Sbjct: 59 LQRLQKELQELGSDLLVLYGRPKAVWTQLLQDWPINKVYTNRDDEPYAKKRDAAVAELLQ 118
Query: 128 EYKVKVEQHVSHTLYNT 144
+ + + H ++
Sbjct: 119 KENIPLLTEKDHVIFEA 135
>gi|218437350|ref|YP_002375679.1| DASH family cryptochrome [Cyanothece sp. PCC 7424]
gi|218170078|gb|ACK68811.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424]
Length = 488
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 11/140 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRFLQ 65
W R +RLHD+ AL A+ K + + P Y D FR F + G R +FL
Sbjct: 9 WFRNDLRLHDHEALNEALQEKAD------IIPFYCFDERQFRTTSYGFPKTGKFRAQFLL 62
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+ADL Q + LGS L + QG PE + P I + NI L + ++ + ++
Sbjct: 63 ESVADLRQSLQKLGSNLVIRQGLPELIIPQIAQPLNITALYYHEEVTAEELTVEKRLKKA 122
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
+ +KVE TLY+ +
Sbjct: 123 LAKCNIKVESFWGTTLYHPD 142
>gi|357112286|ref|XP_003557940.1| PREDICTED: blue-light photoreceptor PHR2-like [Brachypodium
distachyon]
Length = 447
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRK----FMRVGPNRWRFLQ 65
W R +RLHD+ L +A+ G + L P+++ DP F K F R GP R FL
Sbjct: 112 WFRADLRLHDHEPLHAAV------GASSSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLL 165
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
S+ADL + RA G L V G+PE V P++ + + + ++ + + V
Sbjct: 166 DSVADLRRSLRARGGDLVVRVGRPEVVIPELARAAGAEAVYAHGEVSRDECRTEDKVSQA 225
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
K+ V+V+ TLY+ +
Sbjct: 226 IKKEGVEVKYFWGSTLYHMD 245
>gi|163788107|ref|ZP_02182553.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales
bacterium ALC-1]
gi|159876427|gb|EDP70485.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales
bacterium ALC-1]
Length = 434
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
T + W R+ +RL DN A+ KG + +L P++I D + R F
Sbjct: 2 TKTVNIFWFRRDLRLDDNVGFYEAL-----KGNHPVL-PIFIFDSEILSKLPKDDARITF 55
Query: 64 LQQSLADLDQKFR-ALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
+ ++L ++ Q + S + + GKP+EV+ + K +NI + +D EPYAK+RD V
Sbjct: 56 IHETLQNIRQTLQDNYRSSIAMHYGKPKEVYTQLIKDYNINSVYTNHDYEPYAKERDTEV 115
Query: 123 EDMAKEYKVKVEQHVSHTLYNTN 145
+ + E+ ++ + + ++ N
Sbjct: 116 KSVLAEHNIEFKTYKDQVVFEKN 138
>gi|418052977|ref|ZP_12691054.1| Deoxyribodipyrimidine photo-lyase [Mycobacterium rhodesiae JS60]
gi|353179765|gb|EHB45322.1| Deoxyribodipyrimidine photo-lyase [Mycobacterium rhodesiae JS60]
Length = 468
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RLHD PALL A G +L ++LDP K GP R +FL SL +
Sbjct: 13 WFRRDLRLHDLPALLEA----TADGAEVL--GCFVLDPRLEK--SSGPRRLQFLGDSLRE 64
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
L + ALG RL + +G+PE+ P + K + D P+ +RD
Sbjct: 65 LSE---ALGGRLLITRGRPEQRIPLLCKEIGACAVHISSDFSPFGVRRD 110
>gi|309791051|ref|ZP_07685587.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG-6]
gi|308226906|gb|EFO80598.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6]
Length = 459
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+HW R+ +RL DNPAL +A + P+YILDP + P R FL L
Sbjct: 3 IHWFRRDLRLSDNPALSAAALASGGH-----VLPVYILDPTLLNGLWASPARSAFLIAGL 57
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
LD + + G RL V G+P + +TW D PY+++RD +E
Sbjct: 58 RALDAQLQHHGLRLIVRHGEPVATLLHLVAETGASAVTWNRDYSPYSRRRDQAIE 112
>gi|225437398|ref|XP_002270248.1| PREDICTED: blue-light photoreceptor PHR2 [Vitis vinifera]
Length = 454
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 11/149 (7%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRV 56
G + W R +R+HDN L SA N +++ + P+Y DP F +
Sbjct: 114 AGIRRSCIVWFRNDLRVHDNECLNSASN------ESMSMLPVYCFDPRDYGKSSSGFDKT 167
Query: 57 GPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAK 116
GP R FL +S++DL Q + GS L V GKPE V ++ K + ++
Sbjct: 168 GPYRASFLIESVSDLRQNLQKRGSDLVVRIGKPETVLVELAKAVGADAIYAHREVSHDEV 227
Query: 117 KRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
K + +E KE V+++ TLY+ +
Sbjct: 228 KGEEKIEAAMKEEGVELKYFWGSTLYHVD 256
>gi|92429522|gb|ABD93505.2| DNA photolyase protein [Physalis sp. TA1367]
Length = 190
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRVGPNRWRFLQ 65
W R +R+HDN L +A N +++ + P+Y DP F + GP R FL
Sbjct: 2 WFRNDLRVHDNECLNAAHN------ESMSVLPVYCFDPRDYGKSSSGFDKTGPYRATFLI 55
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+ADL + +A GS L V GKPE V ++ K + + ++ K + +E +
Sbjct: 56 ESVADLKKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSYDEVKGEEKIEGV 115
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
K+ V V+ TLY+ +
Sbjct: 116 MKDEGVDVKFFWGSTLYHVD 135
>gi|88808070|ref|ZP_01123581.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
gi|88788109|gb|EAR19265.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
Length = 492
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF----RKFMRVGPNRWRFLQQ 66
W R+ +RL DN L +A+ + +Y+LDP + + P R FL +
Sbjct: 9 WHRRDLRLADNTGLQAAV------ALGPAVTGVYVLDPSIITPPPQLPPMAPARLWFLVE 62
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
SL +L +++R GSRL V+QG P + P + + + W D+EPYA++RD
Sbjct: 63 SLIELQERWREAGSRLLVLQGDPLTLLPQLAALLDSSTVVWSRDVEPYARERD 115
>gi|443646532|ref|ZP_21129464.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa
DIANCHI905]
gi|159027902|emb|CAO89709.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443335725|gb|ELS50187.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa
DIANCHI905]
Length = 474
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 6/126 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L A E+ I+ ++ LDP + + P R +L L
Sbjct: 6 LFWHRRDLRLSDNIGLSKA----RERSPKII--GVFCLDPAILEGDDIAPARVAYLLGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L++ +R GS+L +++GKP + ++ + K + + DIEPYA++RD V +
Sbjct: 60 EELEKNYRQKGSQLLIIRGKPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQT 119
Query: 129 YKVKVE 134
++VE
Sbjct: 120 KGIEVE 125
>gi|325285379|ref|YP_004261169.1| deoxyribodipyrimidine photo-lyase [Cellulophaga lytica DSM 7489]
gi|324320833|gb|ADY28298.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga lytica DSM 7489]
Length = 429
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 71/142 (50%), Gaps = 6/142 (4%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
+ + +V W R+ +R+ DN AL +A+ + G +L P++I D + + R F
Sbjct: 2 SDKISVFWFRRDLRIEDNTALCNAL----KSGNPVL--PVFIFDENILNELDADDARVTF 55
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
+ ++++ ++ + S + + PE + I T+N++ + + D EPYA++RD +
Sbjct: 56 IHKTISAINLTLKEYNSGVLCLHTTPELAWKKIVSTYNVERVFFNKDYEPYARERDQKIT 115
Query: 124 DMAKEYKVKVEQHVSHTLYNTN 145
+ +KV+ + ++ N
Sbjct: 116 SFLNDKSIKVKSNKDSVIFEEN 137
>gi|381185982|ref|ZP_09893558.1| deoxyribodipyrimidine photo-lyase [Flavobacterium frigoris PS1]
gi|379652014|gb|EIA10573.1| deoxyribodipyrimidine photo-lyase [Flavobacterium frigoris PS1]
Length = 431
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 11/136 (8%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
E W R+ +RL DN L A+ N + PL++ D + +R F+
Sbjct: 5 EVTFFWFRRDLRLDDNVGLFQALQ------SNYPVIPLFVFDDLILDSLPKNDSRVSFIY 58
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
SL++++ K +GS L V +GK V+ + + +++K + + D EPYA +RD ++ ++
Sbjct: 59 DSLSEINDKLHEIGSSLLVKKGKTAAVWESLIEEYDVKEVFFNKDYEPYAIERDTVICEL 118
Query: 126 AKEYKVKVEQHVSHTL 141
++V + VS++
Sbjct: 119 -----LEVNKTVSYSF 129
>gi|399576573|ref|ZP_10770328.1| deoxyribodipyrimidine photolyase [Halogranum salarium B-1]
gi|399238017|gb|EJN58946.1| deoxyribodipyrimidine photolyase [Halogranum salarium B-1]
Length = 492
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 20/148 (13%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH------------FRKF 53
+ A+ W R+ +RLHDNP L+ A + L P+Y DP FR +
Sbjct: 4 DTALIWFRRDLRLHDNPVLVDAARAE-------ALLPVYCFDPREYGTADFGGPDSFR-Y 55
Query: 54 MRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEP 113
+ G +R +F ++S+ DL RA GS L V G+PE V P + T + + ++
Sbjct: 56 EKTGGHRAQFRRESVTDLRDSLRAAGSDLLVAHGRPETVLPALVSTTDADAVFFQTLPTS 115
Query: 114 YAKKRDGLVEDMAKEYKVKVEQHVSHTL 141
+ + V +E V V + +HTL
Sbjct: 116 EERTTERAVTARLREEGVAVHRLWTHTL 143
>gi|159487721|ref|XP_001701871.1| cryptochrome DASH1 [Chlamydomonas reinhardtii]
gi|158281090|gb|EDP06846.1| cryptochrome DASH1 [Chlamydomonas reinhardtii]
Length = 469
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKF-----MRVGPNRWRF 63
V W R +RLHDN + A + ++G+ + P+Y+ DP F ++ G +R +F
Sbjct: 11 VLWFRNDLRLHDNYIVHEAAQ-RVKRGEASEVLPVYVYDPRFFAATPWGALKTGAHRAKF 69
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFK 98
+Q+ +ADL Q+ + LGS L V G+PE++ P + +
Sbjct: 70 IQECVADLRQRLQGLGSDLVVAVGQPEQLLPALLE 104
>gi|37520404|ref|NP_923781.1| cryptochrome [Gloeobacter violaceus PCC 7421]
gi|81834455|sp|Q7NMD1.1|CRYD_GLOVI RecName: Full=Cryptochrome DASH
gi|35211397|dbj|BAC88776.1| phrA [Gloeobacter violaceus PCC 7421]
Length = 500
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 11/106 (10%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRFLQ 65
W R +R+HD+ L SA++ +N + LY DP F K F + GP R RFL
Sbjct: 9 WYRNDLRVHDHEPLTSALH------KNARVVALYCFDPRQFGKAPFGFEKTGPFRARFLL 62
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDI 111
+S+ADL + R LGS L V +G PEEV P + I + + ++
Sbjct: 63 ESVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEV 108
>gi|119715025|ref|YP_921990.1| deoxyribodipyrimidine photo-lyase type I [Nocardioides sp. JS614]
gi|119535686|gb|ABL80303.1| deoxyribodipyrimidine photo-lyase type I [Nocardioides sp. JS614]
Length = 453
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AV W R+ +RL DNPAL+ E + + PL++LDP + G R +L S
Sbjct: 7 AVLWFRRDLRLADNPALV-------EAAADGPVLPLFVLDPVL--WGPAGAARRAYLGAS 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L LD R G+RL VV+G P + P + + D PY +RDG VE
Sbjct: 58 LRALDASLRERGTRLSVVRGDPARLVPRAARAVGAARVHVAADFGPYGSRRDGAVE 113
>gi|449436487|ref|XP_004136024.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 1 [Cucumis
sativus]
gi|449498510|ref|XP_004160557.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 1 [Cucumis
sativus]
Length = 459
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRV 56
G + W R +RL DN L SA ++ ++L P+Y DP F +
Sbjct: 117 AGIRRATIVWFRNDLRLQDNECLNSA----HDDSMSVL--PVYCFDPRDYGKSSSGFDKT 170
Query: 57 GPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAK 116
GP R F+ +S++DL + +A GS L V GKPE V ++ K + Y++
Sbjct: 171 GPFRAAFVIESVSDLRKNLQARGSNLVVRIGKPETVLAELAKEIGADAVYAHYEVSHDEM 230
Query: 117 KRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
+ + +E KE V+V+ TLY+ +
Sbjct: 231 ETEERIESAMKEENVEVKYFWGSTLYHID 259
>gi|307107980|gb|EFN56221.1| hypothetical protein CHLNCDRAFT_51884 [Chlorella variabilis]
Length = 1184
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 8 AVHWIR-KGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-----RVGPNRW 61
AV W R +RLHDN A++ + E GQ + PL+ DP + + + G R
Sbjct: 17 AVIWFRGTDLRLHDN-AIVHEAARRVEAGQVAEVLPLFCFDPRYFQASAWGSPKTGQFRA 75
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDI 96
RFL +S+ DL + RALGS L + G+PEEV P +
Sbjct: 76 RFLLESVRDLKARLRALGSDLLICMGRPEEVLPGL 110
>gi|217074548|gb|ACJ85634.1| unknown [Medicago truncatula]
Length = 235
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-----HFRKFMRVGPNRWR 62
A+ W R +R+HDN AL +A N ++I + P+Y DP F + GP R
Sbjct: 120 AIVWFRNDLRVHDNEALNTANN------ESISVLPVYCFDPADYGKSSSGFDKTGPYRAS 173
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFK 98
FL +S++DL + +A GS L V GKPE V ++ K
Sbjct: 174 FLIESISDLRKNLKARGSDLVVRVGKPETVLVELAK 209
>gi|300864867|ref|ZP_07109715.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506]
gi|300337160|emb|CBN54865.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506]
Length = 482
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R+ DN L +A + + + ++ LD + + V P R ++ L
Sbjct: 6 LFWHRRDLRISDNIGLAAARHLSQK------VVGIFCLDFNILQRDDVAPARVAYMIGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L +++ GS+L ++Q +P + P + K + W D+EPY+++RD V + K+
Sbjct: 60 QELQRRYLEAGSQLLILQAEPTQGIPKLAIALQAKAVFWNLDVEPYSRERDDAVSNALKQ 119
Query: 129 YKVKVEQHVSHTLY 142
+KVE L+
Sbjct: 120 AGIKVENFWDQLLH 133
>gi|449436489|ref|XP_004136025.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 2 [Cucumis
sativus]
gi|449498514|ref|XP_004160558.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 2 [Cucumis
sativus]
Length = 451
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRV 56
G + W R +RL DN L SA ++ ++L P+Y DP F +
Sbjct: 117 AGIRRATIVWFRNDLRLQDNECLNSA----HDDSMSVL--PVYCFDPRDYGKSSSGFDKT 170
Query: 57 GPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAK 116
GP R F+ +S++DL + +A GS L V GKPE V ++ K + Y++
Sbjct: 171 GPFRAAFVIESVSDLRKNLQARGSNLVVRIGKPETVLAELAKEIGADAVYAHYEVSHDEM 230
Query: 117 KRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
+ + +E KE V+V+ TLY+ +
Sbjct: 231 ETEERIESAMKEENVEVKYFWGSTLYHID 259
>gi|172039222|ref|YP_001805723.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|354552505|ref|ZP_08971813.1| cryptochrome, DASH family [Cyanothece sp. ATCC 51472]
gi|171700676|gb|ACB53657.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|353555827|gb|EHC25215.1| cryptochrome, DASH family [Cyanothece sp. ATCC 51472]
Length = 491
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 11/148 (7%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK-----FMR 55
+G + + + W R +R+HD+ + AI + L+ PLY D K F +
Sbjct: 4 LGMSNKKILIWYRNDLRIHDHEPMYQAIK------EGALIIPLYCFDIRQFKTTSYGFPK 57
Query: 56 VGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYA 115
G R +FL +S+A+L Q + LGS L V +G PE++ P++ K I + + ++
Sbjct: 58 TGNFRGQFLLESVANLRQSLQDLGSNLIVRKGYPEKIIPELIKELEIDAVYFHEEVTSEE 117
Query: 116 KKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
+ V+ K KVKV+ TLY+
Sbjct: 118 TTVEKEVKQALKPLKVKVQGFWGSTLYH 145
>gi|356500345|ref|XP_003518993.1| PREDICTED: blue-light photoreceptor PHR2-like [Glycine max]
Length = 428
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-----HFRKFMRVGPNRWRFLQ 65
W R +RL DN L +A N +++ + P+Y DP F + GP R FL
Sbjct: 94 WFRNDLRLLDNECLTAANN------ESLSVLPVYCFDPADYGKSASGFDKTGPYRAAFLI 147
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
S++DL + +A GS L V GKPE V ++ K + ++ K + VE
Sbjct: 148 DSVSDLRRNLQARGSDLVVRVGKPEAVLVELAKAVGADAVYAHREVSHDEAKAEERVEAA 207
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
KE V+V+ TLY+ +
Sbjct: 208 MKEENVEVKYFWGSTLYHVD 227
>gi|410626719|ref|ZP_11337472.1| cryptochrome DASH [Glaciecola mesophila KMM 241]
gi|410153820|dbj|GAC24241.1| cryptochrome DASH [Glaciecola mesophila KMM 241]
Length = 433
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+ W R +RLHDNPAL++ +E ++ P + HF+ +G RW FLQQS
Sbjct: 12 GLFWFRHDLRLHDNPALVALSEQVDELLCVFIIDPRWFKSSHFQS-AHMGDKRWAFLQQS 70
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L++L + G +L+V++G+ EV + ++ ++ + P +R K
Sbjct: 71 LSNLQDNLQQQGHQLFVLEGETLEVLDALVGSYTPNIVA--SGMHPGVYERQQWQRLKQK 128
Query: 128 EYKVKVEQHVSHTLY 142
+ V Q +H+L+
Sbjct: 129 QPDVHFIQENAHSLF 143
>gi|434391947|ref|YP_007126894.1| deoxyribodipyrimidine photo-lyase type I [Gloeocapsa sp. PCC 7428]
gi|428263788|gb|AFZ29734.1| deoxyribodipyrimidine photo-lyase type I [Gloeocapsa sp. PCC 7428]
Length = 479
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R+ DN L++A + Q+ + ++ LDP+ + V R ++ L
Sbjct: 8 WHRRDLRIADNTGLVAA------RKQSQKVVGVFCLDPNILERDDVAAVRVTYMIGCLQA 61
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L Q++ +GS+L ++ P + P + N + + W +D+EPY+++RD + + KE
Sbjct: 62 LQQRYTEVGSQLLILHDNPTQAIPRLAAALNAQAVFWNWDVEPYSQERDRTIIEALKEKG 121
Query: 131 VK 132
++
Sbjct: 122 IQ 123
>gi|254525755|ref|ZP_05137807.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
9202]
gi|221537179|gb|EEE39632.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
9202]
Length = 478
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W RK +R+ DN AL AI+ N + YI D ++ W FL SL +
Sbjct: 9 WHRKDLRIFDNQALNKAISLSNA------ITSTYIFDENYSHDFNANSRAW-FLGNSLQE 61
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L + +GSRL + +G P + P + K + K + W IEPY RD ++ KE
Sbjct: 62 LGNNWHRMGSRLVIEKGDPILIIPKLAKIIDAKFVFWNKSIEPYEINRDSKIKKKLKEKN 121
Query: 131 VKVEQHVSHTL 141
++ + H L
Sbjct: 122 IQFIESWDHLL 132
>gi|295134157|ref|YP_003584833.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87]
gi|294982172|gb|ADF52637.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87]
Length = 437
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L+++ ++ + P++I DP + R F+ ++L
Sbjct: 8 IFWFRRDLRLDDNVGFLASLKEEHP------VMPIFIFDPEILDNLPEDDARVTFIFETL 61
Query: 69 ADLDQKFRA-LGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
D+ + + S + + GKPEEVF ++ K +++ + D EPYAK RD ++ +
Sbjct: 62 QDMRNELQENHHSSIGMYHGKPEEVFKELLKNYSLGKVFTNRDYEPYAKDRDEKIQKLLD 121
Query: 128 EYKVKVEQHVSHTLY 142
E VK E ++
Sbjct: 122 ENNVKFETFKDQVIF 136
>gi|384246200|gb|EIE19691.1| DNA photolyase [Coccomyxa subellipsoidea C-169]
Length = 407
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-----HFRKFMRV 56
GG AV W R +R+HDN AL A N ++L P+Y DP
Sbjct: 80 GGARRAAVMWFRNDLRVHDNEALAIA----NRDSSSLL--PVYCFDPREYSSSGNGINST 133
Query: 57 GPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFK 98
GP R +F+ ++ +L RA+GS L V GKPEEV D+ K
Sbjct: 134 GPYRAQFIVDAVMELRNSLRAIGSDLIVRIGKPEEVLTDLAK 175
>gi|108799005|ref|YP_639202.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. MCS]
gi|119868120|ref|YP_938072.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. KMS]
gi|126434608|ref|YP_001070299.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. JLS]
gi|108769424|gb|ABG08146.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. MCS]
gi|119694209|gb|ABL91282.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. KMS]
gi|126234408|gb|ABN97808.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. JLS]
Length = 445
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 11/118 (9%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RLHD PAL+ A +G +L Y+LDP + GP R ++L +L D
Sbjct: 6 WFRRDLRLHDLPALVDA-----AQGDGQVLA-CYVLDPRLHR--SAGPRRLQYLHDALRD 57
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
L + L RL V +G+PE+ P + K+ + + D P+ ++RD V E
Sbjct: 58 LRDQ---LDGRLLVTRGRPEQRIPALAKSIDASAVYVSGDFTPFGRRRDDAVRKALGE 112
>gi|255038083|ref|YP_003088704.1| deoxyribodipyrimidine photo-lyase, partial [Dyadobacter fermentans
DSM 18053]
gi|254950839|gb|ACT95539.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
18053]
Length = 396
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRF 63
++W R +RL DN AL +A+ +E + P+Y+ DP F K F R G R RF
Sbjct: 6 IYWFRNDLRLKDNQALSAAVGSADE------IIPVYVFDPRQFEKTKLGFRRTGALRARF 59
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L +S+A+L + R G L + G PE + + + +N + +I P + + +
Sbjct: 60 LIESVAELRENIRQKGGDLIIRTGAPEAIVAQLAEDYNADYVYTSKEIAPQETRIESSLS 119
Query: 124 DMAKEYKVKVEQHVSHTLYNTN 145
K V ++ T+ N
Sbjct: 120 KNLKTANVDIKLFWMDTMINAT 141
>gi|326493834|dbj|BAJ85379.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 448
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRK----FMRVGPNRWRFLQ 65
W R +RLHD+ L +A+ G + L P+++ DP F K F R GP R FL
Sbjct: 112 WFRADLRLHDHEPLHAAV------GASSSLLPVFVFDPRDFGKSPSGFDRTGPYRASFLL 165
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDI 96
S+ADL + RA G L V G+PE V P++
Sbjct: 166 DSVADLRRSLRARGGDLVVRVGRPEVVIPEL 196
>gi|428213303|ref|YP_007086447.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoria acuminata PCC 6304]
gi|428001684|gb|AFY82527.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoria acuminata PCC 6304]
Length = 486
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 11/142 (7%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRF 63
+ W R +R+HD+ L A+ + + P+Y DP F K F + GP R +F
Sbjct: 7 ILWYRNDLRVHDHEPLYRALE------THAPIVPIYCFDPRQFSKTAYGFPKTGPFRAQF 60
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L +S+A+L Q + LGS L + GKPE + P I N + + ++ + +
Sbjct: 61 LLESVANLRQSLQNLGSNLIIKIGKPEVILPQIAHQVNASAIYFHQEVTAEEIAVETALS 120
Query: 124 DMAKEYKVKVEQHVSHTLYNTN 145
K V ++ HTLY+ +
Sbjct: 121 QGVKSLNVALKSFWGHTLYHCD 142
>gi|326799096|ref|YP_004316915.1| DASH family cryptochrome [Sphingobacterium sp. 21]
gi|326549860|gb|ADZ78245.1| cryptochrome, DASH family [Sphingobacterium sp. 21]
Length = 434
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-------RVGPNRWRF 63
W R +R+ DN L A+ K ++ P+Y+ DP R+F + G R +F
Sbjct: 9 WFRNDLRVRDNEILWQAL----AKADRVV--PVYVFDP--RQFTPLKNGMHKTGVIRAKF 60
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
+ +S+ DL R+LG+ L VV G PEE+ P + + + +K + ++ LVE
Sbjct: 61 ILESVQDLRLSLRSLGADLLVVSGYPEEILPTLAERYQVKEVYHHREVAKEETHISTLVE 120
Query: 124 DMAKEYKVKVEQHVSHTLYN 143
+ + ++ + + HTLY+
Sbjct: 121 EALWKKRLNLRHFIGHTLYH 140
>gi|308049734|ref|YP_003913300.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Ferrimonas balearica DSM 9799]
gi|307631924|gb|ADN76226.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Ferrimonas balearica DSM 9799]
Length = 435
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 5/137 (3%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R +RL DNPALL A K ++P + + +++ RVG + WRF+ +S
Sbjct: 4 ALLWFRHDLRLDDNPALLRAAQAKEALLCLYCIEPRWFVADNWQS-RRVGDHPWRFISES 62
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKT-WNIKLLTWEYDIEPYAKKRDGLVEDMA 126
L DL + ALG +L + G P + P + + W KL+ E ++ L +++
Sbjct: 63 LLDLANRLEALGQQLVIRIGDPNTLIPGLMRNHWIDKLICTAPFGEEERRQYLALKQEVG 122
Query: 127 KEYKVKVEQHVSHTLYN 143
E++ +V Q SHTL+
Sbjct: 123 -EHRCEVWQ--SHTLFT 136
>gi|427711391|ref|YP_007060015.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 6312]
gi|427375520|gb|AFY59472.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 6312]
Length = 486
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R+ D+ L +A EK ++ L+ DP + R +L L D
Sbjct: 19 WHRRDLRIQDHLGLAAA----REKTAKVV--GLFCFDPKILGGEDIAAVRVAYLVGCLED 72
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L Q++ GS+L ++QG+P V P + + + L W D+EPYA+ RD V +
Sbjct: 73 LAQQYHQAGSQLLILQGEPTTVIPKLAQALKAQALYWHCDVEPYAQARDKAVAQALAKAG 132
Query: 131 VKVE 134
+ V+
Sbjct: 133 ISVQ 136
>gi|392945665|ref|ZP_10311307.1| deoxyribodipyrimidine photolyase [Frankia sp. QA3]
gi|392288959|gb|EIV94983.1| deoxyribodipyrimidine photolyase [Frankia sp. QA3]
Length = 473
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 11/116 (9%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+V W+R+ +RL DNPAL +A + +E +L+ L++LD R GP R FL +
Sbjct: 4 SVCWLRRDLRLSDNPALRAAAHGVDE----VLV--LFVLDDVLRS--PAGPVRLAFLHRC 55
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L +LD++ LG RL V G P +V P + + + + + D PY ++RD VE
Sbjct: 56 LRELDEQ---LGGRLCVRVGDPVDVVPAVARAVDARQVHIAADYGPYGRRRDSEVE 108
>gi|434400657|ref|YP_007134661.1| Deoxyribodipyrimidine photo-lyase [Stanieria cyanosphaera PCC 7437]
gi|428271754|gb|AFZ37695.1| Deoxyribodipyrimidine photo-lyase [Stanieria cyanosphaera PCC 7437]
Length = 475
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L +A + Q+ + ++ LD + V P R ++ L
Sbjct: 6 LFWHRRDLRLTDNVGLAAA------RQQSSKIVGVFCLDENLLTKDDVAPARVTYMIGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
L Q ++ GS+L +++GKP + P + +T K + W +D+EPYAK RD V+ E
Sbjct: 60 QQLQQSYQQAGSQLLIIKGKPTQTIPQLAETLQAKTVFWNWDVEPYAKARDQKVKAALTE 119
Query: 129 YKVKV 133
++V
Sbjct: 120 KGIEV 124
>gi|390437938|ref|ZP_10226447.1| Deoxyribodipyrimidine photo-lyase [Microcystis sp. T1-4]
gi|389838649|emb|CCI30571.1| Deoxyribodipyrimidine photo-lyase [Microcystis sp. T1-4]
Length = 474
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L A E+ I+ ++ LDP + + P R +L L
Sbjct: 6 LFWHRRDLRLSDNIGLSKA----RERSPKII--GVFCLDPAILEGDDIAPARVAYLLGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L++ +R GS+L +++G P + ++ + K + + DIEPYA++RD V +
Sbjct: 60 EELEKNYRQKGSQLLIIRGNPSQTLVNLASNLSAKAVFFNLDIEPYARQRDQQVIAALQT 119
Query: 129 YKVKVEQHVSHTLY 142
++VE L+
Sbjct: 120 KGIEVETFWDQLLH 133
>gi|148238598|ref|YP_001223985.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803]
gi|147847137|emb|CAK22688.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803]
Length = 492
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 10/113 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF----RKFMRVGPNRWRFLQQ 66
W R+ +RL DN L +A + +Y+LDP + + P R FL +
Sbjct: 9 WHRRDLRLADNTGLHAA------AALGPAVTGVYVLDPAIIAPPPELPPMAPARLWFLVE 62
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
SL +L Q++R GSRL VV G P + P + + W D+EPYA++RD
Sbjct: 63 SLVELQQRWRDAGSRLLVVAGDPVQRLPQLASLLEAAAVVWSRDVEPYARERD 115
>gi|325914014|ref|ZP_08176370.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas vesicatoria
ATCC 35937]
gi|325539783|gb|EGD11423.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas vesicatoria
ATCC 35937]
Length = 472
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A++ ++ PLYI PH G + +S
Sbjct: 4 AIVWFRRDLRLQDNPALRAALDAGHDP------IPLYIDAPHEEGEWAPGAASRSWRHRS 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD RALGS L + G +V ++ + W EP + RD ++ +
Sbjct: 58 LAALDDTLRALGSGLVIRAGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRNLR 117
Query: 128 EYKVKVE 134
E ++V+
Sbjct: 118 ERGIEVQ 124
>gi|425471493|ref|ZP_18850353.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9701]
gi|389882607|emb|CCI36943.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9701]
Length = 474
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L A E+ I+ ++ LDP + + P R +L L
Sbjct: 6 LFWHRRDLRLSDNIGLSKA----RERSPKII--GVFCLDPAILEGDDIAPARVAYLLGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L++ +R GS+L +++G P + ++ + K + + DIEPYA++RD V ++
Sbjct: 60 EELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQK 119
Query: 129 YKVKVEQHVSHTLY 142
++VE L+
Sbjct: 120 KGIEVETFWDQLLH 133
>gi|448729303|ref|ZP_21711620.1| deoxyribodipyrimidine photolyase [Halococcus saccharolyticus DSM
5350]
gi|445795250|gb|EMA45779.1| deoxyribodipyrimidine photolyase [Halococcus saccharolyticus DSM
5350]
Length = 485
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 19/147 (12%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKF-------MRVGP 58
+ AV W R +R HDN AL+ A++ + + P+Y DP R+F + GP
Sbjct: 3 DTAVVWFRTDLRTHDNEALVRAVDEYDT------VLPVYCFDP--REFGEATFGLAKTGP 54
Query: 59 NRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR 118
R +FL +S+ DL R GS L+V QGKPE V ++ ++ Y P ++R
Sbjct: 55 YRAQFLIESVRDLRGSLREAGSDLFVRQGKPENVVSELAAEHGADIV--HYHTTPATEER 112
Query: 119 --DGLVEDMAKEYKVKVEQHVSHTLYN 143
+ V D E+ + TLY+
Sbjct: 113 AVEASVTDGLDEHGISSRGFWGKTLYH 139
>gi|465501|sp|Q05380.1|YAT1_SYNP1 RecName: Full=Uncharacterized 31.6 kDa protein in atpI 5'region;
AltName: Full=URF1
gi|480494|pir||S36967 hypothetical protein 1 (uncI 5' region) - Synechococcus sp. (PCC
6716)
gi|49221|emb|CAA49877.1| unnamed protein product [Synechococcus sp.]
Length = 284
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN L +A + + ++ DP + V R +L L
Sbjct: 9 WHRRDLRLADNLGLYAA------RQHTPTVVGVFCFDPALLQGQDVAAVRVAYLLGCLQA 62
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L + ++ G L +VQG P +V P++ T + W D+EPYA++RD +V +
Sbjct: 63 LKEAYQQRGGCLLMVQGDPRQVIPEVATTLKATAVHWHEDVEPYARERDRVVAATLNDLG 122
Query: 131 VKVEQHVSHTLY 142
+ V + L+
Sbjct: 123 IAVHRQWDQLLH 134
>gi|336173293|ref|YP_004580431.1| deoxyribodipyrimidine photo-lyase [Lacinutrix sp. 5H-3-7-4]
gi|334727865|gb|AEH02003.1| Deoxyribodipyrimidine photo-lyase [Lacinutrix sp. 5H-3-7-4]
Length = 434
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN A+ K ++ +L P++I D + R F+ ++L
Sbjct: 7 IFWFRRDLRLDDNVGFFEAL-----KAEHPVL-PIFIFDSEILDELPENDARVSFIFETL 60
Query: 69 ADLDQKFR-ALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
++ Q + S L + GKP +++ + K +NI + +D EPYAK+RD ++ +
Sbjct: 61 QNMRQTLQDENNSSLAMFYGKPIDIYKSLIKDYNINTVYTNHDYEPYAKERDSEIQSFLE 120
Query: 128 EYKVKVEQHVSHTLYNTN 145
E K+ + + ++ N
Sbjct: 121 ENKINFKTYKDQVIFEKN 138
>gi|365960525|ref|YP_004942092.1| deoxyribodipyrimidine photo-lyase [Flavobacterium columnare ATCC
49512]
gi|365737206|gb|AEW86299.1| deoxyribodipyrimidine photo-lyase [Flavobacterium columnare ATCC
49512]
Length = 428
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 6/124 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+ W R+ +R+ DN AL A+ ++ Q++L P++I D + R F+ +
Sbjct: 2 TIFWYRRDLRVEDNAALYFAL----QENQSVL--PIFIFDTTILNQLEKTDARVSFIHEQ 55
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L ++++ +A+ L + G P E+F ++ I+ + +D EP A+KRD + ++ K
Sbjct: 56 LQYINRQLKAVNKSLAIFYGNPVEIFSELITKHKIENVYTNHDYEPAARKRDKAINELLK 115
Query: 128 EYKV 131
++V
Sbjct: 116 SHQV 119
>gi|390955135|ref|YP_006418893.1| deoxyribodipyrimidine photolyase [Aequorivita sublithincola DSM
14238]
gi|390421121|gb|AFL81878.1| deoxyribodipyrimidine photolyase [Aequorivita sublithincola DSM
14238]
Length = 434
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN A++ K + P++I D + R F+ ++L
Sbjct: 7 IVWFRRDLRLDDNVGFYKALHGK------FPVIPIFIFDSEILNELPKDDARLTFIFETL 60
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+ + + GS + + GKPE++F I ++++ + D EPYAKKRD +E + E
Sbjct: 61 QKMRTELQEQGSSIALYHGKPEQIFKQIISEFDVQNVITNRDYEPYAKKRDAQIETLLAE 120
Query: 129 YKV 131
++
Sbjct: 121 KEI 123
>gi|148241324|ref|YP_001226481.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
gi|147849634|emb|CAK27128.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
Length = 467
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN L + E + +++LDP + + P R FL +SL +
Sbjct: 7 WHRRDLRLADNLGLAAVSAITPE------VMGVFVLDPAELEHPTMAPARRWFLLESLRE 60
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L Q++R GS+L +++G P E+ P + + + W D+EP ++RD + K
Sbjct: 61 LQQRWRQAGSQLLLLEGNPVELLPRLAQQLGAAGVAWNRDVEPLVRQRDRELAAALKAIG 120
Query: 131 VKV 133
V+V
Sbjct: 121 VRV 123
>gi|449492091|ref|XP_004176864.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome DASH-like [Taeniopygia
guttata]
Length = 488
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP------HFRKFM 54
M GT A+ +R +R HDN L A + + + PLY DP H +
Sbjct: 1 MSGTAGTAICLLRCDLRAHDNQVLHWAQHNAD------FVIPLYCFDPRHYLGTHCYRLP 54
Query: 55 RVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWN--IKLLTWEYDIE 112
+ GP+R RFL +S+ DL + + GS L V +GKPE+V D+ ++ E +
Sbjct: 55 KTGPHRLRFLLESVKDLRETLKKKGSTLVVRKGKPEDVVCDLITQLGSVTAVVFHEEATQ 114
Query: 113 PYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
GL + + +++ VK++ TLY+ +
Sbjct: 115 EELDVEKGLCQ-VCRQHGVKIQTFWGSTLYHRD 146
>gi|402819360|ref|ZP_10868928.1| hypothetical protein IMCC14465_01620 [alpha proteobacterium
IMCC14465]
gi|402511507|gb|EJW21768.1| hypothetical protein IMCC14465_01620 [alpha proteobacterium
IMCC14465]
Length = 474
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 9/114 (7%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
+ ++W R+ +RL DNPALL A + G+ ++ P++I DP R + + + WR Q
Sbjct: 3 KSVIYWFRQDLRLADNPALLHAAH----SGKTVI--PIFIFDPDDRS-LGMAASWWR--Q 53
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
QSLA L+ + +G +L +G+P EV + + + W + Y+ RD
Sbjct: 54 QSLAKLEAALKKIGGKLSFYEGRPVEVLQKLSDFYEADEIVWNRQYDGYSVSRD 107
>gi|425456019|ref|ZP_18835730.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9807]
gi|389802953|emb|CCI18036.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9807]
Length = 474
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L A E+ I+ ++ LDP + + P R +L L
Sbjct: 6 LFWHRRDLRLSDNIGLSKA----RERSPKII--GVFCLDPAILEGDDIAPARVAYLLGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L++ +R GS+L +++G P + ++ + K + + DIEPYA++RD V +
Sbjct: 60 EELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQT 119
Query: 129 YKVKVEQHVSHTLY 142
++VE L+
Sbjct: 120 KGIEVETFWDQLLH 133
>gi|257388282|ref|YP_003178055.1| DASH family cryptochrome [Halomicrobium mukohataei DSM 12286]
gi|257170589|gb|ACV48348.1| cryptochrome, DASH family [Halomicrobium mukohataei DSM 12286]
Length = 483
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK-----FMRVGPNRWRFLQ 65
W R+ +R HDN L A+ + + PLY L RVGP+R +FL
Sbjct: 7 WFRRDLRCHDNATLRRAV------AEADTVVPLYCLPDRLTGEGMFGLDRVGPHRAQFLI 60
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+SLADL + R LYV G P V P+ + ++ + W+ P + G V
Sbjct: 61 ESLADLRESLRDRDGELYVRSGDPGTVVPEAAEEFDADAVYWQALPGPEERDEAGSVRAG 120
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
+ + E +HTLY+ +
Sbjct: 121 LADAGIDSETFWTHTLYHRD 140
>gi|325928738|ref|ZP_08189908.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas perforans
91-118]
gi|325540906|gb|EGD12478.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas perforans
91-118]
Length = 472
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A+ + G + + PLYI PH G + +S
Sbjct: 4 AIVWFRRDLRLEDNPALRAAL----DAGHHPI--PLYIDAPHEEGEWTPGAASRTWRHRS 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD RALGS L + G +V ++ + W EP + RD ++ +
Sbjct: 58 LAALDGALRALGSGLVIRSGNSAQVLDEVIAQTGAAAVYWNRKYEPATQPRDAQIKRDLR 117
Query: 128 EYKVKVE 134
E ++V+
Sbjct: 118 ERGIEVQ 124
>gi|425452606|ref|ZP_18832423.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 7941]
gi|389765542|emb|CCI08602.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 7941]
Length = 474
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L A E+ I+ ++ LDP + + P R +L L
Sbjct: 6 LFWHRRDLRLSDNIGLSKA----RERSPKII--GVFCLDPAILEGDDIAPARVAYLLGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L++ +R GS+L +++G P + ++ + K + + DIEPYA++RD V +
Sbjct: 60 EELEKNYRQKGSQLVIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQT 119
Query: 129 YKVKVE 134
++VE
Sbjct: 120 KGIEVE 125
>gi|433647152|ref|YP_007292154.1| deoxyribodipyrimidine photolyase [Mycobacterium smegmatis JS623]
gi|433296929|gb|AGB22749.1| deoxyribodipyrimidine photolyase [Mycobacterium smegmatis JS623]
Length = 426
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RLHD P LL A E + Y+LDP R GP R ++L +L D
Sbjct: 6 WFRRDLRLHDLPPLLDAAASDGE------VLACYLLDP--RLTASAGPRRLQYLYDALRD 57
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
L + +L RL+V +G+PE+V P + K + D P+ ++RD V
Sbjct: 58 LHE---SLDGRLHVTRGRPEKVIPKLAKEIGASSVHVSADYSPFGRRRDVAV 106
>gi|425443748|ref|ZP_18823817.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9443]
gi|389735029|emb|CCI01399.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9443]
Length = 474
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L A E+ I+ ++ LDP + + P R +L L
Sbjct: 6 LFWHRRDLRLSDNIGLSKA----RERSPKII--GVFCLDPAILEGDDIAPARVAYLLGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L++ +R GS+L +++G P + ++ + K + + DIEPYA++RD V +
Sbjct: 60 EELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQT 119
Query: 129 YKVKVEQHVSHTLY 142
++VE L+
Sbjct: 120 KGIEVETFWDQLLH 133
>gi|428218359|ref|YP_007102824.1| deoxyribodipyrimidine photo-lyase [Pseudanabaena sp. PCC 7367]
gi|427990141|gb|AFY70396.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena sp. PCC 7367]
Length = 489
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 10/138 (7%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF----RKFMRVGPNRWRFL 64
+ W R+ +R+ DNPAL AI QN ++I DP + G + F+
Sbjct: 13 IVWHRRDLRIADNPALDQAI------AQNGATIGIFIFDPQILESKAEDQTTGAGQVDFM 66
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
L +L ++ LGS L G P + DI +T N + + D+EP+A++RD
Sbjct: 67 LGCLQELQAAYQDLGSDLLFFHGDPAKTIRDIAQTLNAARVFFNQDVEPFARERDRQACA 126
Query: 125 MAKEYKVKVEQHVSHTLY 142
E V+V+ + L+
Sbjct: 127 ALAEIGVEVKSFLDLALH 144
>gi|126663929|ref|ZP_01734924.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium
BAL38]
gi|126624193|gb|EAZ94886.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium
BAL38]
Length = 428
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L A+N +++L P++I D + R F+ + L
Sbjct: 3 IFWFRRDLRLEDNVGLFHALN----STEDVL--PIFIFDSEILSQLPKDDARVSFIHEQL 56
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
+ + +G L V GKP E+F + I + +D EPYA+KRD
Sbjct: 57 EKIQSELNKIGKSLAVFHGKPIEIFTQLISENTITSVYTNHDYEPYARKRD 107
>gi|425464194|ref|ZP_18843516.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
gi|389833855|emb|CCI21283.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
Length = 474
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L A E+ I+ ++ LDP + + P R +L L
Sbjct: 6 LFWHRRDLRLSDNIGLSKA----RERSPKII--GVFCLDPAILERDDIAPARVAYLLGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L++ +R GS+L +++G P + ++ + K + + DIEPYA++RD V +
Sbjct: 60 EELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQT 119
Query: 129 YKVKVEQHVSHTLY 142
++VE L+
Sbjct: 120 KGIEVETFWDQLLH 133
>gi|425462955|ref|ZP_18842418.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9808]
gi|389823910|emb|CCI27577.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9808]
Length = 474
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L A E+ I+ ++ LDP + + P R +L L
Sbjct: 6 LFWHRRDLRLSDNIGLSKA----RERSPKII--GVFCLDPAILEGDDIAPARVAYLLGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L++ +R GS+L +++G P + ++ + K + + DIEPYA++RD V +
Sbjct: 60 EELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQT 119
Query: 129 YKVKVE 134
++VE
Sbjct: 120 KGIEVE 125
>gi|425438323|ref|ZP_18818728.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9432]
gi|440755927|ref|ZP_20935128.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa TAIHU98]
gi|389676549|emb|CCH94466.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9432]
gi|440173149|gb|ELP52607.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa TAIHU98]
Length = 474
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L A E+ I+ ++ LDP + + P R +L L
Sbjct: 6 LFWHRRDLRLSDNIGLSKA----RERSPKII--GVFCLDPAILEGDDIAPARVAYLLGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L++ +R GS+L +++G P + ++ + K + + DIEPYA++RD V +
Sbjct: 60 EELEKNYRQKGSQLVIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQT 119
Query: 129 YKVKVE 134
++VE
Sbjct: 120 KGIEVE 125
>gi|37520353|ref|NP_923730.1| DNA photolyase [Gloeobacter violaceus PCC 7421]
gi|35211346|dbj|BAC88725.1| DNA photolyase [Gloeobacter violaceus PCC 7421]
Length = 479
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +R+HDNPAL A + G +L ++I+DP + P R FL++S
Sbjct: 5 AIVWHRRDLRVHDNPALWQA----SRTGGQVL--AVFIVDPTIVERDDTAPARIYFLRES 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKK 117
+ +L + +R +G RL V G+P + + + + + DIEPYA++
Sbjct: 59 VLELQKAYRTIGGRLAVRVGEPVQQLVALAQAVGAGAVYFNDDIEPYARE 108
>gi|269794388|ref|YP_003313843.1| deoxyribodipyrimidine photo-lyase type I [Sanguibacter keddieii DSM
10542]
gi|269096573|gb|ACZ21009.1| deoxyribodipyrimidine photo-lyase type I [Sanguibacter keddieii DSM
10542]
Length = 450
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+HW R+ +RL DNPAL SA G ++ L++LD R + G R +L SL
Sbjct: 4 IHWFRRDLRLADNPALNSAWEQAQADGSQVV--GLFVLDD--RLWGPSGSPRRDYLLASL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
LD+ ++G RL V +G P EV P + + + + EP+ + RD VE E
Sbjct: 60 RALDE---SMGGRLVVRRGAPTEVLPAVAREVGARTVHVAESFEPFGRARDEEVETALAE 116
Query: 129 YKVKVEQ 135
V++ +
Sbjct: 117 DDVELRR 123
>gi|125543822|gb|EAY89961.1| hypothetical protein OsI_11521 [Oryza sativa Indica Group]
Length = 451
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRK----FMRVGPNRWRFLQ 65
W R +RLHD+ L +A+ G + L P+++ DP F K F R GP R FL
Sbjct: 115 WFRADLRLHDHEPLHAAV------GASSSLLPVFVFDPRDFGKSPSGFDRTGPYRAGFLL 168
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDI 96
S+ADL + RA G L V G+PE V P++
Sbjct: 169 DSVADLRRGLRARGGDLVVRVGRPEVVIPEL 199
>gi|115452953|ref|NP_001050077.1| Os03g0343400 [Oryza sativa Japonica Group]
gi|108708083|gb|ABF95878.1| photolyase/blue-light receptor PHR2, putative, expressed [Oryza
sativa Japonica Group]
gi|113548548|dbj|BAF11991.1| Os03g0343400 [Oryza sativa Japonica Group]
gi|125586213|gb|EAZ26877.1| hypothetical protein OsJ_10801 [Oryza sativa Japonica Group]
Length = 459
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRK----FMRVGPNRWRFLQ 65
W R +RLHD+ L +A+ G + L P+++ DP F K F R GP R FL
Sbjct: 123 WFRADLRLHDHEPLHAAV------GASSSLLPVFVFDPRDFGKSPSGFDRTGPYRAGFLL 176
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDI 96
S+ADL + RA G L V G+PE V P++
Sbjct: 177 DSVADLRRGLRARGGDLVVRVGRPEVVIPEL 207
>gi|78047092|ref|YP_363267.1| photolyase [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|78035522|emb|CAJ23168.1| putative photolyase [Xanthomonas campestris pv. vesicatoria str.
85-10]
Length = 500
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A+ + G + + PLYI PH G + +S
Sbjct: 32 AIVWFRRDLRLEDNPALRAAL----DAGHHPI--PLYIDAPHEEGEWTPGAASRTWRHRS 85
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD RALGS L + G +V ++ + W EP + RD ++ +
Sbjct: 86 LAALDGALRALGSGLVIRSGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLR 145
Query: 128 EYKVKVE 134
E ++V+
Sbjct: 146 ERGIEVQ 152
>gi|209524800|ref|ZP_03273346.1| cryptochrome, DASH family [Arthrospira maxima CS-328]
gi|376007766|ref|ZP_09784952.1| Cryptochrome DASH [Arthrospira sp. PCC 8005]
gi|423063001|ref|ZP_17051791.1| cryptochrome DASH family [Arthrospira platensis C1]
gi|209494679|gb|EDZ94988.1| cryptochrome, DASH family [Arthrospira maxima CS-328]
gi|375323871|emb|CCE20705.1| Cryptochrome DASH [Arthrospira sp. PCC 8005]
gi|406715580|gb|EKD10734.1| cryptochrome DASH family [Arthrospira platensis C1]
Length = 486
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMR 55
M P+ + W R +RLHD+ L A + + + + PLY DP F K F +
Sbjct: 1 MAANPQKIILWYRHDLRLHDHEPLDLATSTQAQ------IIPLYCFDPRQFAKTSFGFPK 54
Query: 56 VGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYA 115
+G R +FL +S+ADL + +GS L V G+PE V D+ K NI + + ++
Sbjct: 55 MGGFRGKFLLESVADLRHNLQKIGSNLLVRIGEPETVIFDLVKQLNIDAVYYHKEVTTEE 114
Query: 116 KKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
+ +E V+V+ TLY+
Sbjct: 115 LAVERALEKALTPLGVEVKSFWGATLYH 142
>gi|409390588|ref|ZP_11242316.1| deoxyribodipyrimidine photo-lyase, partial [Gordonia rubripertincta
NBRC 101908]
gi|403199437|dbj|GAB85550.1| deoxyribodipyrimidine photo-lyase, partial [Gordonia rubripertincta
NBRC 101908]
Length = 229
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W+R+ +RL D PAL +A + ++LL +++DP K G R FL SL D
Sbjct: 2 WLRRDLRLSDLPALATA---RGADDSSVLL--CFVVDPRLEK--SSGERRLAFLFDSLRD 54
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
+D K L +L VV+G+P+E P + K N + + D P+ + RD V
Sbjct: 55 VDAK---LDGKLLVVRGRPDEEIPRLAKAVNAEAVHISGDFTPFGRHRDEAV 103
>gi|448583117|ref|ZP_21646586.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
gi|445730074|gb|ELZ81666.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
Length = 504
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFR-----------KFMRV 56
++ W R+ +RLHDN AL +A + + P+Y LDP F +
Sbjct: 6 SLAWFRRDLRLHDNEALAAACDADG-------VLPVYCLDPREYGDRPFGGPDSFDFDKT 58
Query: 57 GPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAK 116
G +R RF +SL+DL R GS L V +G PE V P++ T + +T P
Sbjct: 59 GAHRARFRLESLSDLRSSLRERGSDLVVREGTPESVLPELAATVDADFVTVHTRPTPEES 118
Query: 117 KRDGLVEDMAKEYKVKVEQHVSHTL 141
+ VE V + + HTL
Sbjct: 119 SVESAVERELGGDGVDLRRFWGHTL 143
>gi|189346874|ref|YP_001943403.1| deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245]
gi|189341021|gb|ACD90424.1| Deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245]
Length = 473
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 12/135 (8%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVG-PNRWRFLQQS 67
+HW R+ +RL DNP+L Y KG + P+YILD R+G NRW +L S
Sbjct: 7 IHWFRQDLRLEDNPSLY----YAALKGSVL---PVYILDDRNAGDFRMGGANRW-WLHHS 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L L+ R+L RL ++ G P E+ P + + + W EP+ RD ++ +
Sbjct: 59 LESLN---RSLQGRLTLLMGDPLEILPALAASTGATKVYWNRCYEPWRISRDTRLKHKLR 115
Query: 128 EYKVKVEQHVSHTLY 142
E + E + L+
Sbjct: 116 EQGITAESYNGSMLW 130
>gi|427730047|ref|YP_007076284.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Nostoc sp. PCC 7524]
gi|427365966|gb|AFY48687.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Nostoc sp. PCC 7524]
Length = 479
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R+ DN L A + Q+ + ++ LD + + V P R ++ L
Sbjct: 8 WHRRDLRIADNTGLALA------REQSPQVVGVFCLDSNILERDDVAPARVTYMMGCLQA 61
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L Q++ GS+L ++ G+P + P + +T K + W +D+EPY++ RD + + K
Sbjct: 62 LQQRYAQAGSQLLILHGEPVQAIPHLAETLQAKAVFWNWDVEPYSQIRDRAIMESLK 118
>gi|188992258|ref|YP_001904268.1| photolyase [Xanthomonas campestris pv. campestris str. B100]
gi|167734018|emb|CAP52224.1| Putative photolyase [Xanthomonas campestris pv. campestris]
Length = 520
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A++ ++ PLYI PH G + +S
Sbjct: 52 AIVWFRRDLRLEDNPALRAALDAGHDP------IPLYIDAPHEEGQWAPGAASRAWRHRS 105
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD RA GS L + QG +V + + W EP + RD ++ +
Sbjct: 106 LAALDASLRARGSALLIRQGDSAQVLDAVIAQTEAVAVYWNRKYEPATQPRDAQIKRSLR 165
Query: 128 EYKVKVE 134
E ++V+
Sbjct: 166 ERGLEVQ 172
>gi|255564190|ref|XP_002523092.1| DNA photolyase, putative [Ricinus communis]
gi|223537654|gb|EEF39277.1| DNA photolyase, putative [Ricinus communis]
Length = 458
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 11/149 (7%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRV 56
G ++ W R +R+HDN L SA N + ++L P+Y DP F +
Sbjct: 122 AGIRRASIVWFRNDLRVHDNECLNSA----NNESMSVL--PVYCFDPREYGKSSSGFDKT 175
Query: 57 GPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAK 116
GP R FL +S+ DL + + GS L V GKPE V ++ K + ++
Sbjct: 176 GPYRASFLIESVTDLRKNLQDRGSDLVVRVGKPETVLVELAKAIGADAVYAHKEVSHDEV 235
Query: 117 KRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
K + +E K+ V+V+ TLY+ +
Sbjct: 236 KAEDKIEAAMKDEGVEVKYFWGSTLYHVD 264
>gi|410615205|ref|ZP_11326231.1| deoxyribodipyrimidine photo-lyase [Glaciecola psychrophila 170]
gi|410165289|dbj|GAC40120.1| deoxyribodipyrimidine photo-lyase [Glaciecola psychrophila 170]
Length = 484
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DNPAL Y +E+G L+ PLYI D + G +L QSL+
Sbjct: 11 WFRQDLRLRDNPAL----TYASERG---LVIPLYISDTDCPEHFVPGSASKWWLHQSLSS 63
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L+ +L +L+ ++G ++ + + +IK + W EP+ KRD ++ E
Sbjct: 64 LND---SLNGQLHCLKGDASKLLIEFIQLHDIKSVVWNRSYEPWQIKRDTQLKHALIEAG 120
Query: 131 VKVEQHVSHTLY 142
+ V+ SH L+
Sbjct: 121 INVQSFNSHLLW 132
>gi|434402615|ref|YP_007145500.1| deoxyribodipyrimidine photolyase [Cylindrospermum stagnale PCC
7417]
gi|428256870|gb|AFZ22820.1| deoxyribodipyrimidine photolyase [Cylindrospermum stagnale PCC
7417]
Length = 480
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R+ DN L +A + Q+ + ++ LDP + + P R ++ L
Sbjct: 8 WHRRDLRIADNTGLAAA------QRQSPKVVGVFCLDPDILERDDIAPARVTYMLGCLQA 61
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L +++ GS+L ++ G P V D+ + K + W +D+EPY++KRD + + E
Sbjct: 62 LQERYIQAGSQLLILHGPPVVVIADLAEALKAKAVFWNWDVEPYSQKRDRTIINSLTEKG 121
Query: 131 VK 132
++
Sbjct: 122 IQ 123
>gi|422304305|ref|ZP_16391652.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9806]
gi|389790612|emb|CCI13529.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9806]
Length = 485
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRVGPNRWRFLQ 65
W R +RLHD+ A+ AI + + + P Y D F + G R +FL
Sbjct: 6 WYRNDLRLHDHEAIYRAIQ------EQLEIIPFYCFDERQFGLTSYGFPKSGKFRAKFLL 59
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+ADL Q +LGS L + +GKPEE+ P + + I + + ++ + V
Sbjct: 60 ESVADLRQSLESLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKA 119
Query: 126 AKEYKVKVEQHVSHTLYN 143
+ V+++ + TLY+
Sbjct: 120 LSGFPVQIKTFWTATLYH 137
>gi|21230891|ref|NP_636808.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66769110|ref|YP_243872.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
8004]
gi|21112501|gb|AAM40732.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66574442|gb|AAY49852.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
8004]
Length = 484
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A++ ++ PLYI PH G + +S
Sbjct: 16 AIVWFRRDLRLEDNPALRAALDAGHDP------IPLYIDAPHEEGQWAPGAASRAWRHRS 69
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD RA GS L + QG +V + + W EP + RD ++ +
Sbjct: 70 LAALDASLRARGSALLIRQGDSAQVLDAVIAQTEAVAVYWNRKYEPATQPRDAQIKRSLR 129
Query: 128 EYKVKVE 134
E ++V+
Sbjct: 130 ERGLEVQ 136
>gi|383322099|ref|YP_005382952.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325268|ref|YP_005386121.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383491152|ref|YP_005408828.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436419|ref|YP_005651143.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|97048023|sp|P77967.2|CRYD_SYNY3 RecName: Full=Cryptochrome DASH
gi|28374085|pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
gi|28374086|pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
gi|339273451|dbj|BAK49938.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|359271418|dbj|BAL28937.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274588|dbj|BAL32106.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277758|dbj|BAL35275.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407958277|dbj|BAM51517.1| DNA photolyase [Bacillus subtilis BEST7613]
Length = 489
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMR 55
M P + W R +RLHD+ L A+ + + +Y DP + F +
Sbjct: 1 MKHVPPTVLVWFRNDLRLHDHEPLHRALK------SGLAITAVYCYDPRQFAQTHQGFAK 54
Query: 56 VGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDI 111
GP R FLQQS+ +L + + +G++L V G PE+V P I K N K + + ++
Sbjct: 55 TGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREV 110
>gi|282889865|ref|ZP_06298404.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175848|ref|YP_004652658.1| hypothetical protein PUV_18540 [Parachlamydia acanthamoebae UV-7]
gi|281500439|gb|EFB42719.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480206|emb|CCB86804.1| putative uncharacterized protein [Parachlamydia acanthamoebae UV-7]
Length = 474
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 7/138 (5%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
+ + W+R+ +R+ D+PAL +A ++G I PLYI P +G +L
Sbjct: 3 KVTIVWMRQDLRIEDHPALDAAA----QRGSVI---PLYIWSPQEEGHWPLGGASKWWLH 55
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
SL L+ R+LG L + +GK + D+ K N + W EPYA KRD V+
Sbjct: 56 HSLKSLENDLRSLGLPLIIRKGKSLDCLRDVIKETNADAVFWSRRYEPYAIKRDIQVKSK 115
Query: 126 AKEYKVKVEQHVSHTLYN 143
E + + + LY
Sbjct: 116 LSEEGLLAKSFPGNVLYE 133
>gi|91774219|ref|YP_566911.1| deoxyribodipyrimidine photo-lyase type I [Methanococcoides burtonii
DSM 6242]
gi|91713234|gb|ABE53161.1| Deoxyribodipyrimidine photolyase [Methanococcoides burtonii DSM
6242]
Length = 467
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 12 IRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFR--KFMRVGPNRWRFLQQSLA 69
R+ MR+ DN ALL+A++ + ++ P +ILDP K N +FL +SL
Sbjct: 12 FRRDMRVDDNSALLAALDMSD------VVIPCFILDPRLCDPKGKAFNSNALQFLLESLY 65
Query: 70 DLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEY 129
DL + + RLY+ G PE V + + I + +D P++ KRD + + +
Sbjct: 66 DLKGQLEKVNGRLYLFSGLPEGVIGQLLENLEIDAVFVNHDYTPFSIKRDMQIASICTDK 125
Query: 130 KVKVEQ 135
V + Q
Sbjct: 126 GVDMLQ 131
>gi|383775319|ref|YP_005459885.1| putative deoxyribodipyrimidine photolyase [Actinoplanes
missouriensis 431]
gi|381368551|dbj|BAL85369.1| putative deoxyribodipyrimidine photolyase [Actinoplanes
missouriensis 431]
Length = 443
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
+ AV + +R+HDNPAL A + ++ PLY+LDP + NR RFL
Sbjct: 2 DTAVVLFTRDLRVHDNPALAEAC----AGAERVI--PLYVLDP---TLAGLSGNRSRFLH 52
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
Q LADL ++ R G L V G P + + + + D+ YA++R+ + D
Sbjct: 53 QCLADLREQLRERGGDLVVRTGDPVAEAIRVAREHDAATIHLAADVSGYARRRERRLTDE 112
Query: 126 AKEYKVKVEQH 136
+ +++ V H
Sbjct: 113 GERHRIAVRLH 123
>gi|346724379|ref|YP_004851048.1| photolyase [Xanthomonas axonopodis pv. citrumelo F1]
gi|346649126|gb|AEO41750.1| photolyase [Xanthomonas axonopodis pv. citrumelo F1]
Length = 475
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A+ + G + + PLYI PH G + +S
Sbjct: 4 AIVWFRRDLRLEDNPALRAAL----DAGHHPI--PLYIDAPHEEGEWTPGAASRTWRHRS 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD RALGS L + G +V ++ + W EP + RD ++ +
Sbjct: 58 LAALDGALRALGSGLVIRSGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLR 117
Query: 128 EYKVKVE 134
E ++V+
Sbjct: 118 ERGIEVQ 124
>gi|410027954|ref|ZP_11277790.1| DASH family cryptochrome [Marinilabilia sp. AK2]
Length = 474
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 74/141 (52%), Gaps = 11/141 (7%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRKFM----RVGPNRWR 62
V W R +R+HD+ L Y EK + ++ P+Y DP +F+K + G +R +
Sbjct: 5 VVVWFRNDLRVHDHAPLF----YAAEKAEEVI--PVYCFDPRNFKKVSLGIDKTGNHRAK 58
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FL +++ +L ++LG L ++QGKPEEV + K + + + + ++ K+ + +
Sbjct: 59 FLIEAVDNLRSNLQSLGGDLVIIQGKPEEVLVSLAKKHDAEAIFFSEEVTDEEKEVELQL 118
Query: 123 EDMAKEYKVKVEQHVSHTLYN 143
E A ++ +K + +LY+
Sbjct: 119 EQNAWKHGIKTTAYWQSSLYH 139
>gi|149279053|ref|ZP_01885187.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter
sp. BAL39]
gi|149230332|gb|EDM35717.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter
sp. BAL39]
Length = 410
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Query: 34 KGQNILLKPLYILDPHF---RKF--MRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGK 88
K +IL P+Y DP++ +F ++ G +R +FL +S+A L F+ LG L V+ GK
Sbjct: 8 KSDSIL--PVYFFDPYYFDPTQFNTVKTGMSRTKFLLESVAALRASFQQLGGDLLVLYGK 65
Query: 89 PEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
PEE+ + + I + ++ P + VED+ + K+ + + HTLYN
Sbjct: 66 PEELMAGLVDQYEISEVYHHREVAPEETQISTKVEDLLWKLKINLRHFIGHTLYN 120
>gi|294626579|ref|ZP_06705177.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292599146|gb|EFF43285.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
Length = 484
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A+ + G + + PLYI PH G + +S
Sbjct: 16 AIVWFRRDLRLEDNPALRAAL----DAGHHPI--PLYIDAPHEEGEWTPGAASRTWRHRS 69
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD RALGS L + G +V ++ + W EP + RD ++ +
Sbjct: 70 LAALDGALRALGSGLVIRVGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLR 129
Query: 128 EYKVKVE 134
E ++V+
Sbjct: 130 ERGIEVQ 136
>gi|21242230|ref|NP_641812.1| photolyase [Xanthomonas axonopodis pv. citri str. 306]
gi|21107653|gb|AAM36348.1| photolyase [Xanthomonas axonopodis pv. citri str. 306]
Length = 484
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A+ + G + + PLYI PH G + +S
Sbjct: 16 AIVWFRRDLRLEDNPALRAAL----DAGHHPI--PLYIDAPHEEGEWTPGAASRTWRHRS 69
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD RALGS L + G +V ++ + W EP + RD ++ +
Sbjct: 70 LAALDGALRALGSGLVIRVGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLR 129
Query: 128 EYKVKVE 134
E ++V+
Sbjct: 130 ERGIEVQ 136
>gi|384427365|ref|YP_005636723.1| photolyase [Xanthomonas campestris pv. raphani 756C]
gi|341936466|gb|AEL06605.1| photolyase [Xanthomonas campestris pv. raphani 756C]
Length = 472
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A++ ++ PLYI PH G + +S
Sbjct: 4 AIVWFRRDLRLEDNPALRAALDAGHDP------IPLYIDAPHEEGQWAPGAASRAWRHRS 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD RA GS L + QG +V + + W EP + RD ++ +
Sbjct: 58 LAALDASLRARGSALLIRQGDSAQVLDAVIAQTEAVAVYWNRKYEPATQPRDAQIKRSLR 117
Query: 128 EYKVKVE 134
E ++V+
Sbjct: 118 ERGLEVQ 124
>gi|254283012|ref|ZP_04957980.1| DNA photolyase, putative [gamma proteobacterium NOR51-B]
gi|219679215|gb|EED35564.1| DNA photolyase, putative [gamma proteobacterium NOR51-B]
Length = 483
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W ++ +RL DN AL +AI+ L++P + DPH+R+ W F+ QSL D
Sbjct: 2 WFKRDLRLEDNAALSAAIDANKPLLLLYLVEPRLLRDPHYRR------RHWHFIAQSLRD 55
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI 102
L + + L+V++ EEVFP + +T I
Sbjct: 56 LSSRLSPHDTLLHVLEADAEEVFPRLHRTLGI 87
>gi|422303261|ref|ZP_16390615.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
gi|389791796|emb|CCI12426.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
Length = 474
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L A E+ I+ ++ LDP + + P R +L L
Sbjct: 6 LFWHRRDLRLSDNIGLSKA----RERSPKII--GVFCLDPAILERDDIAPARVAYLLGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L++ +R GS+L ++ G P + ++ + K + + DIEPYA++RD V +
Sbjct: 60 EELEKNYRQKGSQLLIICGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQT 119
Query: 129 YKVKVE 134
++VE
Sbjct: 120 KGIEVE 125
>gi|395802067|ref|ZP_10481321.1| deoxyribodipyrimidine photo-lyase [Flavobacterium sp. F52]
gi|395435798|gb|EJG01738.1| deoxyribodipyrimidine photo-lyase [Flavobacterium sp. F52]
Length = 431
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
+ + W R+ +RL DN L A+ N + PL+I D + R F+
Sbjct: 5 KVTLFWFRRDLRLEDNTGLFHALQ------SNFPVVPLFIFDDDILDRLPKNDARVTFIY 58
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
SL ++ + L S + + +GK ++V+ + + ++I+ + + D EP+A KRD + +
Sbjct: 59 DSLQKVNSELNKLDSSILIKKGKTKDVWKSLIEKFDIQSVFFNKDYEPFAIKRDTAITAL 118
Query: 126 AKEYKVKVEQHVSHTLY 142
KE ++ + H ++
Sbjct: 119 LKENNIETFFYKDHVIF 135
>gi|45387783|ref|NP_991249.1| cryptochrome DASH [Danio rerio]
gi|41688004|dbj|BAD08600.1| cryptochrome dash [Danio rerio]
Length = 520
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 13/139 (9%)
Query: 12 IRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFR-----KFMRVGPNRWRFLQ 65
+R +RLHDN ++ ++I+ PLY DP H++ F + GP R RFL
Sbjct: 11 LRNDLRLHDN----EVFHWAQRNAEHII--PLYCFDPRHYQGTYHYNFPKTGPFRLRFLL 64
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW-NIKLLTWEYDIEPYAKKRDGLVED 124
S+ DL + GS L V QGKPE+V ++ K ++ + + ++ K + +++
Sbjct: 65 DSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKSVEEKLKE 124
Query: 125 MAKEYKVKVEQHVSHTLYN 143
+ + KV+V+ TLY+
Sbjct: 125 ICCQNKVRVQTFWGSTLYH 143
>gi|330835507|ref|YP_004410235.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera cuprina
Ar-4]
gi|329567646|gb|AEB95751.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera cuprina
Ar-4]
Length = 433
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 21/129 (16%)
Query: 12 IRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH------FRKFMRVGPNRWRFLQ 65
R+ +RL DN L+ A+ +E + PL+I+DP ++ +G F+
Sbjct: 7 FRRDLRLEDNTCLIKALRECDE------VVPLFIIDPRQVEDNPYKSPFAIG-----FMI 55
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
SL +LDQ + +GSRL++++G PEE+ P I N + D P++++RD +++
Sbjct: 56 DSLLELDQDLKTMGSRLHLLKGFPEEIIPKI----NADAVYMNEDYTPFSRQRDERIKEK 111
Query: 126 AKEYKVKVE 134
K V E
Sbjct: 112 VKGKLVTCE 120
>gi|163849034|ref|YP_001637078.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222527000|ref|YP_002571471.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
gi|163670323|gb|ABY36689.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222450879|gb|ACM55145.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
Length = 479
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+HW R+ +RL DN AL++A + P++I D + P R +FL L
Sbjct: 3 IHWFRRDLRLRDNTALMAAATAAGGA-----VVPVFIFDDAILRGRFASPARTQFLLDCL 57
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
A LD + R G L V +G P D+ + +TW D PYA +RD ++ +E
Sbjct: 58 AALDAELRTFGLHLVVRRGDPLRTLFDVLRESGASGVTWNRDYTPYAVRRDTAIKQALRE 117
>gi|168067358|ref|XP_001785586.1| photolyase-like protein [Physcomitrella patens subsp. patens]
gi|162662787|gb|EDQ49598.1| photolyase-like protein [Physcomitrella patens subsp. patens]
Length = 557
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 14/99 (14%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-------HFRKFMRVGPNR 60
A+ W R +R+ DN ALL A + Q ++ PLY++DP HF F + G R
Sbjct: 66 AIVWFRNDLRISDNEALLKAW----QSSQAVV--PLYVVDPRLYGQTYHF-GFPKTGELR 118
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99
+F+ +S+A+L R G L V QGKPE+V P I K+
Sbjct: 119 AQFIMESVANLRDNLRQRGLDLIVRQGKPEDVVPSIAKS 157
>gi|418515773|ref|ZP_13081952.1| photolyase [Xanthomonas axonopodis pv. malvacearum str. GSPB1386]
gi|418520050|ref|ZP_13086101.1| photolyase [Xanthomonas axonopodis pv. malvacearum str. GSPB2388]
gi|410704710|gb|EKQ63192.1| photolyase [Xanthomonas axonopodis pv. malvacearum str. GSPB2388]
gi|410707682|gb|EKQ66133.1| photolyase [Xanthomonas axonopodis pv. malvacearum str. GSPB1386]
Length = 472
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A+ + G + + PLYI PH G + +S
Sbjct: 4 AIVWFRRDLRLEDNPALRAAL----DAGHHPI--PLYIDAPHEEGEWTPGAASRTWRHRS 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD RALGS L + G +V ++ + W EP + RD ++ +
Sbjct: 58 LAALDGALRALGSGLVIRVGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLR 117
Query: 128 EYKVKVE 134
E ++V+
Sbjct: 118 ERGIEVQ 124
>gi|381170327|ref|ZP_09879485.1| DNA photolyase family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|390989717|ref|ZP_10260012.1| DNA photolyase family protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|372555581|emb|CCF66987.1| DNA photolyase family protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|380689197|emb|CCG35972.1| DNA photolyase family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 472
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A+ + G + + PLYI PH G + +S
Sbjct: 4 AIVWFRRDLRLEDNPALRAAL----DAGHHPI--PLYIDAPHEEGEWTPGAASRTWRHRS 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD RALGS L + G +V ++ + W EP + RD ++ +
Sbjct: 58 LAALDGALRALGSGLVIRVGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLR 117
Query: 128 EYKVKVE 134
E ++V+
Sbjct: 118 ERGIEVQ 124
>gi|97047702|sp|Q4KML2.2|CRYD_DANRE RecName: Full=Cryptochrome DASH; AltName: Full=Protein CRY-DASH;
Short=zCRY-DASH
Length = 520
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 13/139 (9%)
Query: 12 IRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFR-----KFMRVGPNRWRFLQ 65
+R +RLHDN ++ ++I+ PLY DP H++ F + GP R RFL
Sbjct: 11 LRNDLRLHDN----EVFHWAQRNAEHII--PLYCFDPRHYQGTYHYNFPKTGPFRLRFLL 64
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW-NIKLLTWEYDIEPYAKKRDGLVED 124
S+ DL + GS L V QGKPE+V ++ K ++ + + ++ K + +++
Sbjct: 65 DSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKSVEEKLKE 124
Query: 125 MAKEYKVKVEQHVSHTLYN 143
+ + KV+V+ TLY+
Sbjct: 125 ICCQNKVRVQTFWGSTLYH 143
>gi|315501047|ref|YP_004079934.1| deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5]
gi|315407666|gb|ADU05783.1| Deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5]
Length = 440
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
T AV + +R+HD+PAL +A + + + PLY+LDP +K + PNR RF
Sbjct: 2 TGRTAVVLFTRDLRVHDHPALAAACSAFDR------VVPLYVLDPALQK---LSPNRTRF 52
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
L QSLADL + R G L + +G P + + + + D+ YA +R+
Sbjct: 53 LHQSLADLREALRKRGGDLVIRRGDPVAETVKLARKVGAEGVGLSADVSRYAHRRE 108
>gi|302864753|ref|YP_003833390.1| deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC
27029]
gi|302567612|gb|ADL43814.1| Deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC
27029]
Length = 440
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
T AV + +R+HD+PAL +A + + + PLY+LDP +K + PNR RF
Sbjct: 2 TGRTAVVLFTRDLRVHDHPALAAACSAFDR------VVPLYVLDPALQK---LSPNRTRF 52
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
L QSLADL + R G L + +G P + + + + D+ YA +R+
Sbjct: 53 LHQSLADLREALRKRGGDLVIRRGDPVAETVKLARKVGAEGVGLSADVSRYAHRRE 108
>gi|384419903|ref|YP_005629263.1| photolyase [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353462816|gb|AEQ97095.1| photolyase [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 472
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 10/129 (7%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFR-KFMRVGPNR-WRFLQ 65
A+ W R+ +RL DNPAL +A+ + G + + PLYI PH ++ G +R WR
Sbjct: 4 AIVWFRRDLRLQDNPALRAAL----DAGHHPI--PLYIDAPHEEGEWTPGGASRTWR--H 55
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+SLA L+ RALGS L + G +V D+ + W EP + RD ++
Sbjct: 56 RSLAALEDALRALGSGLVIRAGDSAQVLDDVIAQTGAVAVYWNRKYEPATQPRDAQIKRA 115
Query: 126 AKEYKVKVE 134
+E ++ +
Sbjct: 116 LRERGIEAQ 124
>gi|399029602|ref|ZP_10730423.1| deoxyribodipyrimidine photolyase [Flavobacterium sp. CF136]
gi|398072566|gb|EJL63778.1| deoxyribodipyrimidine photolyase [Flavobacterium sp. CF136]
Length = 431
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W ++ +RL DN L A+ N + PL+I D + R F+ SL
Sbjct: 10 WFKRDLRLDDNIGLFHALQ------SNFPVIPLFIFDEDILDHLPKNDARVSFIYDSLEK 63
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
++++ A+ S + + +GK EV+ + ++I+ + + D EPYA KRD ++ + ++
Sbjct: 64 INEQLSAIDSSILIKKGKTAEVWKSLLTEFDIQKVFFNKDYEPYAIKRDQEIDALLQQNN 123
Query: 131 VKVEQHVSHTLY 142
++ + H ++
Sbjct: 124 IESLSYKDHVIF 135
>gi|168016051|ref|XP_001760563.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688260|gb|EDQ74638.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 3 GTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRVG 57
G ++ W R +R+HDN AL+SA N +IL P+Y DP F + G
Sbjct: 175 GLRRASIVWFRNDLRVHDNEALVSA----NRDSLSIL--PVYCFDPKDYGKSSSGFDKTG 228
Query: 58 PNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99
P R FL + +A+L R GS L V G PE V D+ K+
Sbjct: 229 PYRANFLLECVANLRSSLRERGSDLIVRVGSPEAVLVDLAKS 270
>gi|411119570|ref|ZP_11391950.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoriales cyanobacterium JSC-12]
gi|410711433|gb|EKQ68940.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoriales cyanobacterium JSC-12]
Length = 496
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGP 58
T + W R +R+ D+ L A+ +IL P+Y +DP F + F + G
Sbjct: 2 TQSSILIWYRNDLRVADHEPLYQALRIN---ASHIL--PVYCIDPRQFGQTSFGFPKTGA 56
Query: 59 NRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR 118
R +FL +SLADL + + LGS L + +G PE+V P++ + ++I + + ++
Sbjct: 57 FRAQFLLESLADLRRSLQQLGSNLIIRRGYPEQVIPELIQQFSISAVCYHKEVTSEEVIV 116
Query: 119 DGLVEDMAKEYKVKVEQHVSHTLYN 143
+ +E K V++ HTLY+
Sbjct: 117 EDALERALKPMGVELRSFWGHTLYH 141
>gi|220905687|ref|YP_002480998.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425]
gi|219862298|gb|ACL42637.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425]
Length = 475
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R+ DN L +A + + + ++ LDP+ + V P R ++ SL
Sbjct: 8 WHRRDLRIADNVGLAAA------RQRTAKVVGVFCLDPNLLERDDVAPARVAYMIGSLQH 61
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L Q++ GS+L ++ +P P + K + W +D+EPY+++RD V+ +
Sbjct: 62 LQQQYVQSGSQLLILHQQPTIAIPQLATALQAKAVFWNWDVEPYSQERDRTVQTALETVG 121
Query: 131 VKVEQHVSHTLY 142
++V+ L+
Sbjct: 122 IEVQNFWDQLLH 133
>gi|427705816|ref|YP_007048193.1| deoxyribodipyrimidine photo-lyase type I [Nostoc sp. PCC 7107]
gi|427358321|gb|AFY41043.1| deoxyribodipyrimidine photo-lyase type I [Nostoc sp. PCC 7107]
Length = 479
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 71/139 (51%), Gaps = 7/139 (5%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
E + W R+ +R+ DN L +A + Q+ + ++ LD + + + P R ++
Sbjct: 3 ELILFWHRRDLRISDNTGLATA------RSQSPKVVGVFCLDRNILERDDIAPVRVTYMI 56
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
L L +++ +GS+L ++ EV P + + N K + W +D+EPY++ RD + D
Sbjct: 57 GCLQALQERYAQIGSQLLILHADAMEVIPALAEALNAKAVFWNWDVEPYSQIRDRNIIDA 116
Query: 126 AKEYKVK-VEQHVSHTLYN 143
K ++ + ++ TL++
Sbjct: 117 LKAKGIQFLSENWDQTLHS 135
>gi|427739107|ref|YP_007058651.1| deoxyribodipyrimidine photolyase [Rivularia sp. PCC 7116]
gi|427374148|gb|AFY58104.1| deoxyribodipyrimidine photolyase [Rivularia sp. PCC 7116]
Length = 519
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN ++ A+ N + P +I+DP F ++ VG R RFL + L
Sbjct: 3 ILWFRRDLRLSDNESVFKAV------ANNAEVLPCFIIDPWFFEWKDVGKARVRFLFECL 56
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFK 98
+LD + +GS+L++ +G +V +I K
Sbjct: 57 ENLDVNLQEIGSKLFIFEGNSVDVIQNITK 86
>gi|224099353|ref|XP_002334490.1| predicted protein [Populus trichocarpa]
gi|222872649|gb|EEF09780.1| predicted protein [Populus trichocarpa]
Length = 230
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-----HFRKFMRV 56
GT + W R +R+HDN L N N ++L P+Y DP F +
Sbjct: 120 AGTRRACIVWFRNDLRVHDNECL----NSANNDSMSVL--PVYCFDPRDYGKSSSGFDKT 173
Query: 57 GPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFK 98
GP R FL +S++DL + +A GS L V G+PE V ++ K
Sbjct: 174 GPYRANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAK 215
>gi|383622627|ref|ZP_09949033.1| deoxyribodipyrimidine photolyase [Halobiforma lacisalsi AJ5]
gi|448699507|ref|ZP_21699315.1| deoxyribodipyrimidine photolyase [Halobiforma lacisalsi AJ5]
gi|445780215|gb|EMA31115.1| deoxyribodipyrimidine photolyase [Halobiforma lacisalsi AJ5]
Length = 474
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 22/150 (14%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-----RVGPNR 60
E AV W R +R+ DNP L A+ +E + PLY++DP R ++G +R
Sbjct: 2 ETAVVWFRDDLRITDNPTLADAVTAADE------VVPLYVVDPRKRGETEYGTEKLGAHR 55
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEY-----DIEPYA 115
RF ++SL +L + G L+V +G+PE V P++ + + + ++E
Sbjct: 56 ARFRRESLLELRAGLQDRGGDLFVRRGRPETVLPEVAGRVDADAVYAQTKPATEELETEV 115
Query: 116 KKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
R+ L +D V E+ +HTLY+ +
Sbjct: 116 GVRETLPDD------VSFERRWTHTLYHVS 139
>gi|448734435|ref|ZP_21716661.1| deoxyribodipyrimidine photolyase [Halococcus salifodinae DSM 8989]
gi|445800483|gb|EMA50838.1| deoxyribodipyrimidine photolyase [Halococcus salifodinae DSM 8989]
Length = 479
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 15/145 (10%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRKFM----RVGPNR 60
+ AV W R +R HDN AL+ A++ + + P+Y DP F + M + GP R
Sbjct: 3 DTAVVWFRTDLRTHDNEALVRAVDEYDT------VLPVYCFDPREFDETMFDLPKTGPYR 56
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR-- 118
RFL S+ DL + R G L V QGK E V P + ++ Y P ++R
Sbjct: 57 ARFLVDSVRDLRRSLRQAGGDLLVRQGKTENVVPQLAAEHGADIV--HYHTTPATEERAI 114
Query: 119 DGLVEDMAKEYKVKVEQHVSHTLYN 143
+ V D E+ + TLY+
Sbjct: 115 ENGVTDGLDEHGIDSRDFWGKTLYH 139
>gi|116787609|gb|ABK24574.1| unknown [Picea sitchensis]
gi|224284157|gb|ACN39815.1| unknown [Picea sitchensis]
Length = 526
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRVGPNR 60
+ A+ W R +R+HDN AL SA N++ ++L P+Y DP F + GP R
Sbjct: 188 KAAIVWFRNDLRVHDNEALSSA----NKEALSVL--PVYCFDPRDYGKSSSGFDKTGPFR 241
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
FL + +A+L R GS L V G+PEEV ++ K+ L ++
Sbjct: 242 ATFLLECVANLRANLRERGSDLVVRIGRPEEVLVELAKSIGADALYAHQEVSH------- 294
Query: 121 LVEDMAKEYKVK 132
E++A E K+K
Sbjct: 295 --EEIATEEKIK 304
>gi|436834800|ref|YP_007320016.1| Deoxyribodipyrimidine photo-lyase [Fibrella aestuarina BUZ 2]
gi|384066213|emb|CCG99423.1| Deoxyribodipyrimidine photo-lyase [Fibrella aestuarina BUZ 2]
Length = 452
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR-WRFLQ 65
A+ W R+ +RLHDN AL A+ + G+ +L PL+I D + +R F+
Sbjct: 7 IAIMWHRRDLRLHDNAALYYAL----KAGRPVL--PLFIFDKDILDHLNDKRDRRVEFIY 60
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+ + + Q GS L V G+P +VF ++ + + + YD E YAK RD V
Sbjct: 61 EEVLAMQQALHKQGSTLLVRYGRPLDVFKELASEYTLANVFTNYDYETYAKGRDAEVATY 120
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
K + TL++ +
Sbjct: 121 LKSVNAGFHSYKDQTLFDRD 140
>gi|147902555|ref|NP_001084438.1| cryptochrome DASH [Xenopus laevis]
gi|82239825|sp|Q75WS4.1|CRYD_XENLA RecName: Full=Cryptochrome DASH
gi|41688006|dbj|BAD08601.1| cryptochrome dash [Xenopus laevis]
Length = 523
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 12 IRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP------HFRKFMRVGPNRWRFLQ 65
+R +RLHDN L ++ + I+ PLY DP H+ F + GP+R +FL
Sbjct: 12 LRNDLRLHDNEVL----HWAHRNADQIV--PLYCFDPRHYVGTHYFNFPKTGPHRLKFLL 65
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW-NIKLLTWEYDIEPYAKKRDGLVED 124
+S+ DL + GS L + +GKPEEV D+ K N+ +T + + V+
Sbjct: 66 ESVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDVESAVKQ 125
Query: 125 MAKEYKVKVEQHVSHTLYN 143
+K + TLY+
Sbjct: 126 ACTRLGIKYQTFWGSTLYH 144
>gi|126658972|ref|ZP_01730114.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
gi|126619770|gb|EAZ90497.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
Length = 486
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 11/140 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILD-PHFRK----FMRVGPNRWRFLQ 65
W R +R+HD+ L I + L+ P Y D F+ F + G R +FL
Sbjct: 9 WYRNDLRIHDHEPLYQGIK------EGDLVIPFYCFDIRQFQTTSYAFPKTGNFRGQFLL 62
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+A+L Q + LGS L V +G PE++ P++ K I + + ++ K + V+
Sbjct: 63 ESVANLRQSLQDLGSDLIVRKGYPEKIIPELIKELEIDAVYFHEEVTSEETKVEKKVKQA 122
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
K KVKV TLY+ N
Sbjct: 123 LKPLKVKVPGFWGATLYHWN 142
>gi|356535153|ref|XP_003536113.1| PREDICTED: blue-light photoreceptor PHR2-like [Glycine max]
Length = 440
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 11/140 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRVGPNRWRFLQ 65
W R +RL DN L +A N ++ + P+Y DP F + GP R FL
Sbjct: 106 WFRNDLRLLDNECLTAANN------DSLSVLPVYCFDPSDYGKSASGFDKTGPYRAAFLI 159
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
S++DL + +A GS L V GKPE V ++ K + ++ K + VE
Sbjct: 160 DSVSDLRRSLQARGSDLVVRVGKPETVLVELAKAVGADAVYAHREVSHDEAKAEEKVEAA 219
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
KE V+V+ TLY+ +
Sbjct: 220 MKEENVEVKYFWGSTLYHVD 239
>gi|226315066|ref|YP_002774962.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
gi|226098016|dbj|BAH46458.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
Length = 484
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RLHD+ AL +A+ G I+ P+YI++ VG R +
Sbjct: 3 AIVWFRRDLRLHDHAALHAAML----TGDPII--PVYIVEDSLCLSAAVGDKRLHAHFSA 56
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
+A LD LG RL + +G+P++V + + + L + D P A+KRD LV ++
Sbjct: 57 IAALDDALVQLGGRLLIRRGEPQQVLCQLAQETGAEKLFFNRDYTPDARKRDELVSEVLS 116
Query: 128 EYKVKV 133
+ V V
Sbjct: 117 RHGVFV 122
>gi|440749714|ref|ZP_20928960.1| Deoxyribodipyrimidine photolyase [Mariniradius saccharolyticus AK6]
gi|436482000|gb|ELP38146.1| Deoxyribodipyrimidine photolyase [Mariniradius saccharolyticus AK6]
Length = 434
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 7/115 (6%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRKFMRVGPNRWRFL 64
+ ++ W R+ +RL DN L A Y+ EK N+L PL++ D + K R F+
Sbjct: 3 KVSLFWFRRDLRLEDNTGLFYA--YQQEK--NVL--PLFVFDRNILDKLEDKDDARVTFI 56
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
+ L + + GS + V G P +V+ ++ +T++I+++ D EPYAK+RD
Sbjct: 57 HDQIQRLSSELQHFGSSILVKYGSPLDVYRELLETYDIQVVYTNRDYEPYAKERD 111
>gi|288919996|ref|ZP_06414317.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f]
gi|288348649|gb|EFC82905.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f]
Length = 472
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 12/109 (11%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W+R+ +RL DNPAL++A GQ +L L++LD + GP R FL + L D
Sbjct: 3 WLRRDLRLDDNPALIAA------AGQGPVLA-LFVLDEALCR--PAGPVRLAFLYRCLRD 53
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
LD R L RL V G PE+V P + ++ D PY ++RD
Sbjct: 54 LD---RRLAGRLCVRAGDPEQVVPAVAGEIGADVVHIAADHGPYGRRRD 99
>gi|242096612|ref|XP_002438796.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor]
gi|241917019|gb|EER90163.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor]
Length = 577
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 3 GTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-------HFRKFMR 55
G AV W R +R+ DN ALL A + + P+Y +DP H+ F +
Sbjct: 75 GGAGVAVVWFRNDLRVLDNEALLRAWSASEA------VLPVYCVDPRVFAGSTHYFGFPK 128
Query: 56 VGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99
G R +FL + L DL Q R G L V GKPEE+ P I K
Sbjct: 129 TGALRAQFLIECLGDLKQILRKKGLDLLVRHGKPEEILPSIAKA 172
>gi|289580258|ref|YP_003478724.1| deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
gi|448281497|ref|ZP_21472802.1| deoxyribodipyrimidine photolyase [Natrialba magadii ATCC 43099]
gi|289529811|gb|ADD04162.1| Deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
gi|445578544|gb|ELY32948.1| deoxyribodipyrimidine photolyase [Natrialba magadii ATCC 43099]
Length = 468
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW R+ +R DN +L +A E G I P +I DP +F P R F+ +SL
Sbjct: 5 VHWHRRDLRATDNHSLSAAA----ETGSVI---PAFIFDPAVLEF--ASPPRVAFMLESL 55
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
++L +R G L V G P E P I + + ++W D A KRD V +
Sbjct: 56 SELRAWYRERGGDLVVATGDPREELPRIAREHGAERVSWNRDYSGLASKRDEEVRE 111
>gi|212275814|ref|NP_001131008.1| uncharacterized LOC100192113 [Zea mays]
gi|194690696|gb|ACF79432.1| unknown [Zea mays]
gi|194701496|gb|ACF84832.1| unknown [Zea mays]
gi|414866740|tpg|DAA45297.1| TPA: photolyase/blue-light receptor PHR2 [Zea mays]
Length = 446
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRK----FMRVGPNRWRFLQ 65
W R +RLHD+ +A G + L P+++ DP F K F R GP R FL
Sbjct: 112 WFRADLRLHDHEPFHAA------AGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLL 165
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDI 96
S+ADL + RA G L V G+PE V P++
Sbjct: 166 DSVADLRRSLRARGGDLVVRVGRPEVVIPEL 196
>gi|67925725|ref|ZP_00519034.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
gi|67852431|gb|EAM47881.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
Length = 486
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK-----FMRVGPNRWRFLQ 65
W R +R+HD+ L AI Q L+ P Y D K F + G R +FL
Sbjct: 9 WYRNDLRIHDHEPLYQAIK------QGALIIPFYCFDIRQFKTTSFGFPKTGNFRGQFLL 62
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+ DL + + LGS L + QG PE++ P++ K I + + ++ + VE
Sbjct: 63 ESVTDLKKSLQDLGSNLIIRQGYPEKIIPELIKQLEIDAVYFHEEVTSEETDIENTVEKA 122
Query: 126 AKEYKVKVEQHVSHTLY 142
K V + TLY
Sbjct: 123 LKPLNVTFKGFWGATLY 139
>gi|290975950|ref|XP_002670704.1| predicted protein [Naegleria gruberi]
gi|284084266|gb|EFC37960.1| predicted protein [Naegleria gruberi]
Length = 553
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQN---ILLKPLYILDPHFRKFMRVG--- 57
T + A+ W R +RLHDN +L+ + N N + + PLY DP F R+G
Sbjct: 7 TLKKALLWFRNDLRLHDNESLIKTLRLANSSNNNTSKVGVLPLYCFDPRHFGFSRIGKFR 66
Query: 58 ---PNRWRFLQQSLADLDQKF-RALGSRLYVVQGKPEEVFPDIFKTWNIK 103
NR RFL +S+ +L + G +L + G PEE+ P + + I+
Sbjct: 67 KANANRTRFLTESVDNLRKNLMNEWGLKLMIQIGHPEEIIPHLCSQYEIE 116
>gi|319954856|ref|YP_004166123.1| deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237]
gi|319423516|gb|ADV50625.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237]
Length = 436
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 7/138 (5%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
+ ++ W R+ +RL DN L A+ KG +L P++I D + + R F+
Sbjct: 4 KISIFWFRRDLRLEDNVGLYQAL-----KGDYPVL-PIFIFDKEILENLPKDDARVSFIF 57
Query: 66 QSLADLDQKFRA-LGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
+ L + + + S L + G P+E+F + K + ++ + +D EPYA +RD ++D
Sbjct: 58 EQLESMRNTLQEEVESSLAIYHGTPQEIFKSLIKDYEVQAVYTNHDYEPYATERDTKIQD 117
Query: 125 MAKEYKVKVEQHVSHTLY 142
K+ +V + ++
Sbjct: 118 YLKDKQVDFHSYKDQVIF 135
>gi|383322123|ref|YP_005382976.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325292|ref|YP_005386145.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491176|ref|YP_005408852.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436443|ref|YP_005651167.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|339273475|dbj|BAK49962.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|359271442|dbj|BAL28961.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274612|dbj|BAL32130.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277782|dbj|BAL35299.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-P]
Length = 479
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL+D+ AL A +K I+ ++ LD + + P R +L L
Sbjct: 13 WHRRDLRLNDHLALAKA----RQKTAKIV--GVFCLDNKILQAEDMAPARVAYLLGCLQS 66
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L ++ LGS L V Q P ++ P + T +TW D EPYA+KRD V +E
Sbjct: 67 LQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRERG 126
Query: 131 VKV 133
+ +
Sbjct: 127 LAI 129
>gi|88704316|ref|ZP_01102030.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
gi|88701367|gb|EAQ98472.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
Length = 434
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A++W R +RLHDNP L+ A K +LL L+ L + +G R RF+ +S
Sbjct: 3 AIYWFRNDLRLHDNPGLVEAA-----KADELLLLYLWPLQRAWCNTQGLGEQRERFITES 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L L + LG L V+QG PE V PD+ + + + + Y + V + +
Sbjct: 58 LKALQDDLQPLGQSLLVLQGSPELVIPDLVRDYGVDAVHASQCAGSYETR---AVRVLRE 114
Query: 128 EYKVKVEQHVSHTLY 142
+ V +H +TL+
Sbjct: 115 RLHIPVTEHAGNTLF 129
>gi|347754095|ref|YP_004861659.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
gi|347586613|gb|AEP11143.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
Length = 475
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN ALL+A E + P++I D G R FL +SL +
Sbjct: 8 WFRRDLRLDDNTALLAAYAAAEE------VVPVFIFDDAILSRPDTGAVRVAFLLESLRN 61
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
LD+ RA GSRL + +G+PE V + + + D+EP+A RD V
Sbjct: 62 LDENLRARGSRLLLRRGRPEHVLAQLVTETAASAVYFNRDVEPFALARDARV 113
>gi|16330382|ref|NP_441110.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|451814540|ref|YP_007450992.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|2499552|sp|Q55081.1|PHR_SYNY3 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|1652872|dbj|BAA17790.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|1771978|gb|AAB81109.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|451780509|gb|AGF51478.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
Length = 488
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL+D+ AL A +K I+ ++ LD + + P R +L L
Sbjct: 22 WHRRDLRLNDHLALAKA----RQKTAKIV--GVFCLDNKILQAEDMAPARVAYLLGCLQS 75
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L ++ LGS L V Q P ++ P + T +TW D EPYA+KRD V +E
Sbjct: 76 LQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRERG 135
Query: 131 VKV 133
+ +
Sbjct: 136 LAI 138
>gi|92429530|gb|ABD93509.2| DNA photolyase protein [Nicotiana tomentosiformis]
Length = 170
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 12 IRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRVGPNRWRFLQQ 66
R +R+HDN +L +A N +++ + P+Y DP F + GP R FL +
Sbjct: 1 FRNDLRVHDNESLNAAHN------ESMSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 54
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
S+ DL + +A GS L V GKPE V ++ K + + ++ K + +E +
Sbjct: 55 SVTDLRKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSYDEVKGEDKIESVM 114
Query: 127 KEYKVKVEQHVSHTLYNTN 145
K+ V+V+ TLY+ +
Sbjct: 115 KDEGVEVKYFWGSTLYHVD 133
>gi|407958302|dbj|BAM51542.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
Length = 482
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL+D+ AL A +K I+ ++ LD + + P R +L L
Sbjct: 16 WHRRDLRLNDHLALAKA----RQKTAKIV--GVFCLDNKILQAEDMAPARVAYLLGCLQS 69
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L ++ LGS L V Q P ++ P + T +TW D EPYA+KRD V +E
Sbjct: 70 LQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRERG 129
Query: 131 VKV 133
+ +
Sbjct: 130 LAI 132
>gi|332662341|ref|YP_004445129.1| deoxyribodipyrimidine photo-lyase [Haliscomenobacter hydrossis DSM
1100]
gi|332331155|gb|AEE48256.1| Deoxyribodipyrimidine photo-lyase [Haliscomenobacter hydrossis DSM
1100]
Length = 449
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPN-RWRFLQQ 66
+ W R+ +RL DN L A+ N + PL+I D + + R FL Q
Sbjct: 5 TLFWFRRDLRLQDNAGLYHALK------SNFPVLPLFIFDTEILDELDDPEDARVAFLHQ 58
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
+ +L + LGS + V GKP EV+P+I + + + + +D EP A +RD V+++
Sbjct: 59 RITELQAELEHLGSSMLVRYGKPAEVWPEILQDYLVAEVYTNHDYEPRAIQRDEAVQNLL 118
Query: 127 KEYKV 131
+ +
Sbjct: 119 AQQNI 123
>gi|166363455|ref|YP_001655728.1| DNA photolyase [Microcystis aeruginosa NIES-843]
gi|166085828|dbj|BAG00536.1| DNA photolyase [Microcystis aeruginosa NIES-843]
Length = 474
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L A E+ I+ ++ LDP + + P R +L L
Sbjct: 6 LFWHRRDLRLSDNIGLSKA----RERSPKII--GVFCLDPAILEGDDIAPARVAYLLGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L++ + GS+L +++G P + ++ + K + + DIEPYA++RD V +
Sbjct: 60 EELEKNYHQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQT 119
Query: 129 YKVKVE 134
++VE
Sbjct: 120 KGIEVE 125
>gi|425439515|ref|ZP_18819837.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
gi|389720241|emb|CCH96030.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
Length = 474
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L A + ++ + ++ LDP + + P R +L L
Sbjct: 6 LFWHRRDLRLSDNIGLSKA------RDRSPKIIGVFCLDPAILERDDIAPARVAYLLGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L++ +R GS+L ++ G P + ++ + K + + DIEPYA++RD V +
Sbjct: 60 EELEKNYRQKGSQLLIICGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQT 119
Query: 129 YKVKVEQHVSHTLY 142
++VE L+
Sbjct: 120 KGIEVETFWDQLLH 133
>gi|354568677|ref|ZP_08987840.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Fischerella sp.
JSC-11]
gi|353539931|gb|EHC09411.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Fischerella sp.
JSC-11]
Length = 480
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R+ DN L +A + ++ + ++ LDP+ + V P R ++ L
Sbjct: 8 WHRRDLRISDNTGLATA------RQRSAKVVGVFCLDPNILERDDVAPVRVTYMIGCLQA 61
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L +++ GS+L ++ P + P + K + W +D+EPY+++RD + KE
Sbjct: 62 LQKRYAQAGSQLLILHAHPTQAIPALAVALGAKAVFWNWDVEPYSQERDRTIISALKEKG 121
Query: 131 VK 132
++
Sbjct: 122 IE 123
>gi|72383487|ref|YP_292842.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. NATL2A]
gi|72003337|gb|AAZ59139.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. NATL2A]
Length = 493
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 9/138 (6%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPN--RWRFLQ 65
++ W R+ +R DN L A KN K L +Y+LDP R W FL
Sbjct: 6 SIFWHRRDLRFGDNIGLFEA--SKNSKS----LIGVYVLDPKLLDLNRTTSEAKNW-FLG 58
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+SL +L + + GSRL ++ G P E+ + + + + + W +IEPY RD + +
Sbjct: 59 ESLIELQKNWEIRGSRLLILNGDPIELISKLAELVHAECIYWNENIEPYEINRDKQIAEK 118
Query: 126 AKEYKVKVEQHVSHTLYN 143
+ K KV + + N
Sbjct: 119 LSKEKRKVYTFLDQLIVN 136
>gi|428217984|ref|YP_007102449.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena sp. PCC 7367]
gi|427989766|gb|AFY70021.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena sp. PCC 7367]
Length = 500
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 15/150 (10%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGP 58
+P+ + W R +R+HD+ L + K I + P+Y DP F F + G
Sbjct: 2 SPQRIIIWYRNDLRIHDHEPLWTV-----AKAGAIAI-PIYCFDPRQFATTKYGFAKTGA 55
Query: 59 NRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYA--- 115
R +FL +S+ DL + R LGS L V G+PE++ P++ + N Y E +
Sbjct: 56 FRAQFLTESVLDLRDRLRQLGSDLIVRYGEPEQILPELAQKLNANANAIYYHQEVTSEET 115
Query: 116 KKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
K + +D+A +K++ HTLY+ +
Sbjct: 116 KVEAAIAQDLAAT-DIKLQAFWGHTLYHRD 144
>gi|256425909|ref|YP_003126562.1| deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588]
gi|256040817|gb|ACU64361.1| Deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588]
Length = 434
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 7/140 (5%)
Query: 5 PECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR-WRF 63
P + W+R+ +RL D+ AL A+ N + P+++ D + + +R F
Sbjct: 3 PTVNLCWLRRDLRLLDHAALYHALKSGNP------VVPVFVFDTNILNDLDDKHDRRVTF 56
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
+ L DL +K LGS L V G P++ F + ++++ + D EPYA KRD +
Sbjct: 57 IHDILEDLQEKLSKLGSTLDVFYGTPQQAFEHYTREYDVQEVFTNIDYEPYAVKRDSDIA 116
Query: 124 DMAKEYKVKVEQHVSHTLYN 143
+ K + + H +++
Sbjct: 117 KILKAKNIHFHLYKDHVIFD 136
>gi|22297968|ref|NP_681215.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
gi|22294146|dbj|BAC07977.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
Length = 480
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL+DN L +A + + L+ DP + R +L L
Sbjct: 7 WHRRDLRLNDNLGLAAAYTRTPK------VVGLFCFDPAILSASDIAAVRVAYLVGCLQA 60
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L + +R LG + +G P ++ P + K + W D+EPY ++RD V KE
Sbjct: 61 LQEAYRRLGGSFLIFRGDPRQILPQVAKGLGAVAVHWHEDVEPYGRERDRAVAAALKEKG 120
Query: 131 VKVE 134
+ VE
Sbjct: 121 IAVE 124
>gi|325103845|ref|YP_004273499.1| deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145]
gi|324972693|gb|ADY51677.1| Deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145]
Length = 448
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 13/127 (10%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWR--- 62
+ ++ W+R+ +RL D AL A+ KNE N+L PL+I D + + PN++
Sbjct: 18 QISLVWLRRDLRLDDQAALYHAL--KNE--TNVL--PLFIFDT---TILNLLPNKFDRRV 68
Query: 63 -FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
F+ Q L+D+ ++ A+ S L V G P +VF ++ + IK + D EP A RD
Sbjct: 69 DFIHQVLSDMKKELDAINSSLLVEYGDPIDVFSELIDRFTIKAIYTNRDYEPTAIARDES 128
Query: 122 VEDMAKE 128
V+ + +
Sbjct: 129 VKKLVES 135
>gi|168053729|ref|XP_001779287.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp.
patens]
gi|162669299|gb|EDQ55889.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp.
patens]
Length = 435
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-----HFRKFMRV 56
G ++ W R +RLHDN AL+SA ++ + P+Y DP +
Sbjct: 50 AGLRRASIVWFRNDLRLHDNEALVSASR------DSLSILPVYCFDPRDYGNSSLGIDKN 103
Query: 57 GPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99
GP R +FL + +A+L R GS L V GKPEEV D+ K+
Sbjct: 104 GPYRVKFLFECVANLRSSLRERGSDLIVRIGKPEEVLLDLAKS 146
>gi|449016857|dbj|BAM80259.1| probable cryptochrome DASH [Cyanidioschyzon merolae strain 10D]
Length = 669
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 23/155 (14%)
Query: 5 PECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILD-------PHFRKFMRVG 57
P A+ W R +RLHDN AL A + +++L +Y+ D F F+R+G
Sbjct: 102 PGTALLWFRNDLRLHDNEALRLA-----NRAESLLC--VYVFDERYFFGKSRFGGFLRIG 154
Query: 58 PNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDI-EPYAK 116
+R FL++ + DL Q R+ G L V G P +V P + + + ++ L + ++ E
Sbjct: 155 EHRAYFLRECIVDLRQALRSRGQELIVEIGSPVDVIPRLVQKFGVQHLIFSKEVTEEEIA 214
Query: 117 KRDGLVEDMAKEYKVKVEQHVS-----HTLYNTNL 146
+ LV +A +V + +S H ++N L
Sbjct: 215 TENALVRTLA---QVAAQGQISAPVQCHAVWNATL 246
>gi|428225294|ref|YP_007109391.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Geitlerinema sp. PCC 7407]
gi|427985195|gb|AFY66339.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Geitlerinema sp. PCC 7407]
Length = 498
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMR 55
M TP + W R +RLHD+ L A+ Q + P+Y DP HF K F +
Sbjct: 1 MADTP--ILLWFRNDLRLHDHEPLQRALK------QKTAIAPVYCFDPRHFGKTPYGFPK 52
Query: 56 VGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFK 98
G R +FL +S+ADL + GS L V GKPEEV P I +
Sbjct: 53 TGAFRAQFLLESVADLRASLQKRGSDLIVRVGKPEEVVPAIAR 95
>gi|448357813|ref|ZP_21546508.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
gi|445648121|gb|ELZ01083.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
Length = 466
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW R+ +R DN +L +A E G I P ++ DP ++ P R F+ +SL
Sbjct: 3 VHWHRRDLRAADNRSLSAAA----ETGSVI---PAFVFDPAVLEY--ASPPRVAFMLESL 53
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
++L +R GS L V G P + P I + + + ++W D A KRD V +
Sbjct: 54 SELRAWYRERGSDLVVATGDPRDELPRIAREHDAESVSWNRDYSGLASKRDEAVRE 109
>gi|428769113|ref|YP_007160903.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium aponinum PCC 10605]
gi|428683392|gb|AFZ52859.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium aponinum PCC 10605]
Length = 491
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWR 62
A+ W R +R+HD+ A+L+ I +G + P Y D F+ F + G R +
Sbjct: 10 ALIWFRNDLRIHDH-AILARI----AEGDYQRIIPFYCFDDRQFQTTSFGFAKTGKYRAK 64
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FL +S+ADL + + LG+ L V +G PE++ PDI K +N+ + + K + +
Sbjct: 65 FLIESVADLRESLQKLGTDLIVRKGIPEQIIPDIAKQYNVTEFYFSQEATEEEIKVEKRL 124
Query: 123 EDMAKEYKVKVEQHVSHTLY 142
K+ ++V+ TLY
Sbjct: 125 IKALKQLHIQVKSCWQSTLY 144
>gi|404424432|ref|ZP_11006013.1| deoxyribodipyrimidine photo-lyase [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403651393|gb|EJZ06529.1| deoxyribodipyrimidine photo-lyase [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 444
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R HD+PALL A E + Y+LDP G R R+L ++L
Sbjct: 6 WFRRDLRCHDHPALLEAAQPDGE------VLACYVLDPRLEA--SAGAPRLRYLYRALRA 57
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L + +L RL V +G+PEE P + + + + D P+ ++RD V+
Sbjct: 58 LSE---SLDGRLLVTRGRPEERIPALARAISATSVHISQDYSPFGRRRDDTVQ 107
>gi|242040969|ref|XP_002467879.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor]
gi|241921733|gb|EER94877.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor]
Length = 447
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRK----FMRVGPNRWRFLQ 65
W R +RLHD+ +A G + L P+++ DP F K F R GP R FL
Sbjct: 113 WFRADLRLHDHEPFHAA------AGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLL 166
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDI 96
S+ADL + RA G L V G+PE V P++
Sbjct: 167 DSVADLRRSLRARGGDLVVRVGRPEVVIPEL 197
>gi|92429534|gb|ABD93511.2| DNA photolyase protein [Solanum tuberosum]
Length = 189
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRVGPNRWRFLQ 65
W R +R+HDN L +A N +++ + +Y DP F + GP R FL
Sbjct: 1 WFRNDLRVHDNECLNAAHN------ESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLI 54
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+ADL + +A GS L V GKPE V ++ K + + ++ K + ++ +
Sbjct: 55 ESVADLRKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAV 114
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
K+ ++V+ TLY+ +
Sbjct: 115 MKDEGLEVKYFWGSTLYHVD 134
>gi|294665668|ref|ZP_06730944.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292604563|gb|EFF47938.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 484
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A+ + G + + PLYI PH G + +S
Sbjct: 16 AIVWFRRDLRLEDNPALRAAL----DAGHHPI--PLYIDAPHEEGEWTPGAASRTWRHRS 69
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD RALGS L + G +V ++ + W EP + RD ++ +
Sbjct: 70 LAALDGALRALGSGLVIRVGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLR 129
Query: 128 EYKVKVE 134
E ++ +
Sbjct: 130 ERGIEAQ 136
>gi|381158412|ref|ZP_09867645.1| deoxyribodipyrimidine photolyase [Thiorhodovibrio sp. 970]
gi|380879770|gb|EIC21861.1| deoxyribodipyrimidine photolyase [Thiorhodovibrio sp. 970]
Length = 493
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 6/138 (4%)
Query: 5 PECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFL 64
P A+ W R+ +RL DNPAL++A++ G LL P+Y+ P G +L
Sbjct: 2 PSTAILWFRRDLRLSDNPALMAALD-----GCERLL-PVYLHAPDEEAPWSPGAASNWWL 55
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
SL LD R GSRL++++G + + + + W EP RD ++
Sbjct: 56 HHSLQALDACLRERGSRLFILRGDSLACLQALITATSARAVFWNRCYEPARIARDSFIKQ 115
Query: 125 MAKEYKVKVEQHVSHTLY 142
+ ++ E H L+
Sbjct: 116 QLRAQGIRCESHNGGLLF 133
>gi|448592440|ref|ZP_21651547.1| deoxyribodipyrimidine photolyase [Haloferax elongans ATCC BAA-1513]
gi|445731445|gb|ELZ83029.1| deoxyribodipyrimidine photolyase [Haloferax elongans ATCC BAA-1513]
Length = 496
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 24/148 (16%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFR-----------KFMRV 56
A+ W R+ +RLHDN AL+ A + P+Y DP F +
Sbjct: 6 ALVWFRRDLRLHDNEALVDACGADQ-------VVPVYCFDPRDYGQQSYGGPGSFDFRKT 58
Query: 57 GPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW---NIKLLTWEYDIEP 113
G +R RF +S+ADL R GS L V G+PE V PD+ ++ + TW P
Sbjct: 59 GFHRLRFRLESVADLRSSLRDRGSDLVVRVGRPEAVLPDVATAVGADSVSMHTWP---TP 115
Query: 114 YAKKRDGLVEDMAKEYKVKVEQHVSHTL 141
++ + V+ + V+ + HTL
Sbjct: 116 EERQVESAVQQALDDVGVESRRFWGHTL 143
>gi|124006560|ref|ZP_01691393.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
gi|123987973|gb|EAY27653.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
Length = 483
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 14/127 (11%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK-----FMRVGPNR 60
+ + W R +R+HDN L A + + L P+Y DP + F + G +R
Sbjct: 13 QVKIVWFRNDLRVHDNDVLAKAASDAD------YLLPVYCFDPRQYETTSLGFAKTGAHR 66
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
+FL ++LA+L A GS L + GKPEEV D+ K K + Y + + D
Sbjct: 67 AQFLIETLANLRANLEAKGSGLVIRIGKPEEVIADLAKATQAKAV---YASQEIGTEEDA 123
Query: 121 LVEDMAK 127
V+ + K
Sbjct: 124 TVKQLEK 130
>gi|254776317|ref|ZP_05217833.1| Phr protein [Mycobacterium avium subsp. avium ATCC 25291]
Length = 442
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RLHD+PAL +A + + ++LDP ++ GP R +FL S
Sbjct: 3 ALLWFRRDLRLHDHPALSAAADSDE-------VLACFVLDPRLQR--SSGPRRLQFLGDS 53
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
L L + L RL V +G+P+ P+I K + D P+ K+RD V
Sbjct: 54 LRVLRDE---LDGRLLVTRGRPDIRIPEIAKAIGASSVHVSEDFTPFGKRRDARV 105
>gi|431797441|ref|YP_007224345.1| deoxyribodipyrimidine photolyase [Echinicola vietnamensis DSM
17526]
gi|430788206|gb|AGA78335.1| deoxyribodipyrimidine photolyase [Echinicola vietnamensis DSM
17526]
Length = 431
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPN-RWRFL 64
+ + W+R+ +RL DN AL A +N N+L PL+I D + + + R F+
Sbjct: 3 KITLFWMRRDLRLEDNTALFYACQQEN----NVL--PLFIFDTTILEELDDKKDARVAFI 56
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
Q L L + A G ++V GKP E+F + +I + D EPYA RD V
Sbjct: 57 HQRLQQLKEALEAKGFSIWVKTGKPLEIFKQLVDENDIAAVYCNRDYEPYAISRDKAVNA 116
Query: 125 MAKE 128
KE
Sbjct: 117 FLKE 120
>gi|118464028|ref|YP_883059.1| Phr protein [Mycobacterium avium 104]
gi|118165315|gb|ABK66212.1| Phr protein [Mycobacterium avium 104]
Length = 442
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RLHD+PAL +A + + ++LDP ++ GP R +FL S
Sbjct: 3 ALLWFRRDLRLHDHPALSAAADSDE-------VLACFVLDPRLQR--SSGPRRLQFLGDS 53
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
L L + L RL V +G+P+ P+I K + D P+ K+RD V
Sbjct: 54 LRVLRDE---LDGRLLVTRGRPDIRIPEIAKAIGASSVHVSEDFTPFGKRRDARV 105
>gi|389871451|ref|YP_006378870.1| deoxyribodipyrimidine photo-lyase [Advenella kashmirensis WT001]
gi|388536700|gb|AFK61888.1| deoxyribodipyrimidine photo-lyase [Advenella kashmirensis WT001]
Length = 473
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R+ DN L A+ Q + L++ D H + R F+ L D
Sbjct: 2 WFRRDLRMTDNRPLFQALR------QCETVFCLFVFDTHILSTLPPDDRRVAFIDACLDD 55
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
L ++ + GS L V G P+++ PDI + N++ + D EP AK+RD
Sbjct: 56 LQRQLQQAGSGLIVRHGTPQQMIPDIAQALNVEAVFAGSDYEPQAKERD 104
>gi|427738511|ref|YP_007058055.1| deoxyribodipyrimidine photolyase [Rivularia sp. PCC 7116]
gi|427373552|gb|AFY57508.1| deoxyribodipyrimidine photolyase [Rivularia sp. PCC 7116]
Length = 482
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R+ DN + +A+ ++ + ++ LDP+ K V R ++ L
Sbjct: 8 WHRRDLRISDNTGIAAALKKTHK------VVGVFCLDPNILKGDDVAAVRVTYMIGCLQK 61
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L +++ +GS+L ++ P + K N K + W +D+EPY+++RD V D +E
Sbjct: 62 LQERYAQMGSQLLILWDNPVVAIAKLAKALNSKAVFWNWDVEPYSQQRDADVIDALQEQG 121
Query: 131 VK 132
++
Sbjct: 122 IE 123
>gi|68534519|gb|AAH98514.1| Cryptochrome DASH [Danio rerio]
Length = 520
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 13/139 (9%)
Query: 12 IRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFR-----KFMRVGPNRWRFLQ 65
+R +RLHDN ++ ++I+ PLY DP H++ F + GP R RFL
Sbjct: 11 LRNDLRLHDN----EVFHWAQRNAEHII--PLYSFDPRHYQGTYHYNFPKTGPFRLRFLL 64
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW-NIKLLTWEYDIEPYAKKRDGLVED 124
S+ DL + GS L V QGKPE+V ++ K ++ + + ++ K + +++
Sbjct: 65 DSVKDLRALLKKHGSTLLVRQGKPEDVVFELIKQLGSVSTVAFHEEVASEEKSVEEKLKE 124
Query: 125 MAKEYKVKVEQHVSHTLYN 143
+ + KV+V+ TLY+
Sbjct: 125 ICCQNKVRVQTFWGSTLYH 143
>gi|413955779|gb|AFW88428.1| hypothetical protein ZEAMMB73_274298 [Zea mays]
Length = 396
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRK----FMRVGPNRWRFLQ 65
W R +RLHD+ +A G + L P+++ DP F K F R GP R FL
Sbjct: 112 WFRADLRLHDHEPFHAA------AGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLL 165
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
S+ADL + RA G L V G+PE V P++ + + + ++ + + V+
Sbjct: 166 DSVADLRRSLRARGGDLVVRVGRPEVVIPELARAAGAEAVYAHGEVSRDEVRTEERVQKA 225
Query: 126 AKEYKVKVEQHVSHTLYN 143
++ + V+ TLY+
Sbjct: 226 VEKEGINVKYFWGSTLYH 243
>gi|411117128|ref|ZP_11389615.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
gi|410713231|gb|EKQ70732.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
Length = 493
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN L +A + ++ + ++ LDP + V P R ++ L
Sbjct: 8 WHRRDLRLADNVGLAAA------RQRSSKVVGVFCLDPTILQRDDVAPVRVSYMLGCLQS 61
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L + + +GS+L +V+ P++ ++ T N + + W D+EPY++ RD V +E
Sbjct: 62 LQEGYAKVGSQLLIVKTLPQKGIVNLATTLNARAVFWNQDVEPYSRARDRTVAAALREQG 121
Query: 131 VKV 133
++
Sbjct: 122 IEA 124
>gi|339649212|gb|AEJ87227.1| putative light-receptive cryptochrome [Platynereis dumerilii]
Length = 365
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%)
Query: 60 RWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
R +FL + L DLD + G RLYVV+G + V + + W + +T E D EP + RD
Sbjct: 14 RMKFLLECLKDLDDSLKKHGGRLYVVKGPSDVVIKQLIEEWGVTRVTCEIDPEPIWQPRD 73
Query: 120 GLVEDMAKEYKVKVEQHVSHTLYN 143
V+D+ VK + SH L++
Sbjct: 74 KAVKDLCATKGVKWFDYNSHLLWD 97
>gi|163759469|ref|ZP_02166554.1| DNA photolyase [Hoeflea phototrophica DFL-43]
gi|162283066|gb|EDQ33352.1| DNA photolyase [Hoeflea phototrophica DFL-43]
Length = 484
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R +R++DN ALL+A ++K + P+YIL+P G +W +L S
Sbjct: 12 AIVWFRNDLRVNDNAALLAASSHKQ-------VVPVYILEPAANTRAIGGARKW-WLHHS 63
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA L +K LG+ L +++G P + + + + + W +P D ++D +
Sbjct: 64 LAKLGEKLADLGAPLMLMRGDPALLIAGLVEKTDAAAVYWNRRYDPAFLSSDASLKDALR 123
Query: 128 EYKVKVEQHVSHTLY 142
+ VE L+
Sbjct: 124 AQDIVVESFAGQLLH 138
>gi|41409179|ref|NP_962015.1| Phr [Mycobacterium avium subsp. paratuberculosis K-10]
gi|417749286|ref|ZP_12397690.1| deoxyribodipyrimidine photolyase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|440778546|ref|ZP_20957303.1| deoxyribodipyrimidine photo-lyase [Mycobacterium avium subsp.
paratuberculosis S5]
gi|41397999|gb|AAS05629.1| Phr [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336459275|gb|EGO38220.1| deoxyribodipyrimidine photolyase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|436721022|gb|ELP45201.1| deoxyribodipyrimidine photo-lyase [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 442
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RLHD+PAL +A + + ++LDP ++ GP R +FL S
Sbjct: 3 ALLWFRRDLRLHDHPALSAAADSDE-------VLACFVLDPRLQR--SSGPRRLQFLGDS 53
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
L L + L RL V +G+P+ P+I K + D P+ K+RD V
Sbjct: 54 LRVLRDE---LDGRLLVTRGRPDIRIPEIAKAIGASSVHVSEDFTPFGKRRDARV 105
>gi|260062651|ref|YP_003195731.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata
HTCC2501]
gi|88784218|gb|EAR15388.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata
HTCC2501]
Length = 434
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 7/138 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L A+ G+ +L P++I D + R FL L
Sbjct: 7 IFWFRRDLRLEDNRGLCEALG----AGRPVL--PIFIFDSEILDGLPADDPRVTFLHDRL 60
Query: 69 ADLDQKFRA-LGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
+L + + GS L + GKP E+F ++ W++ + D EPYA+ RD V
Sbjct: 61 QELRSRMQENQGSSLAIYHGKPLEIFKELASDWDVGQVFTNRDYEPYARDRDEQVGQWLS 120
Query: 128 EYKVKVEQHVSHTLYNTN 145
E ++ ++ +
Sbjct: 121 EQGIEFHTFKDQVIFEKD 138
>gi|428182576|gb|EKX51436.1| induced by DNA damage [Guillardia theta CCMP2712]
Length = 493
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPN-----RWRF 63
V W R +RL DN + A + + P+Y DP F + GP R +F
Sbjct: 7 VLWFRNDLRLTDNVLIAEASKRFLASNSALSVLPVYCFDPRFFAQSQYGPRKTGVLRAKF 66
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99
L +S+ADL ++ + +GS L V+ GKPE + P + ++
Sbjct: 67 LLESVADLKKRLQGVGSDLLVLSGKPEVIIPRLMQS 102
>gi|448321022|ref|ZP_21510503.1| deoxyribodipyrimidine photolyase [Natronococcus amylolyticus DSM
10524]
gi|445604422|gb|ELY58370.1| deoxyribodipyrimidine photolyase [Natronococcus amylolyticus DSM
10524]
Length = 472
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW RK +R DN AL A Q L P+++LDP ++ P R L ++L
Sbjct: 3 VHWHRKDLRGVDNRALARA-------AQADRLVPVFVLDPTILEY--ASPVRVACLLEAL 53
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
ADL +R GS L VV+G EV P + + + W D A +RD V +E
Sbjct: 54 ADLRAWYRDRGSDLLVVRGNAREVIPSLAAERDAARVVWNEDYSGLAAERDEAVRAALEE 113
Query: 129 YKVKVE 134
+ E
Sbjct: 114 EGIDHE 119
>gi|433460771|ref|ZP_20418395.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
gi|432191119|gb|ELK48100.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
Length = 497
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W ++ +RLHD+ L +A+ + G +L PLY+ +P + + ++F+++SL
Sbjct: 4 VVWFKRDLRLHDHAPLYNAV----QSGDMVL--PLYVAEPSIWQGQELSARHYQFVKESL 57
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWN-IKLLTWEYDIEPYAKKRDGLVEDMAK 127
DL ++ + G RL+V G+ E V +I++T+ L E + P RD V K
Sbjct: 58 HDLQKELKQRGGRLFVAVGEMETVLEEIYETYGPFSLHAHEENGTPVTFSRDQRVRSWMK 117
Query: 128 E 128
+
Sbjct: 118 Q 118
>gi|226508658|ref|NP_001146707.1| uncharacterized protein LOC100280309 [Zea mays]
gi|219888435|gb|ACL54592.1| unknown [Zea mays]
Length = 550
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 3 GTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-------HFRKFMR 55
G AV W R +R+ DN ALL A + +L P+Y +DP H+ F +
Sbjct: 48 GGVGVAVVWFRNDLRVIDNEALLRAW----AASEAVL--PVYCVDPRVFAGSTHYFGFPK 101
Query: 56 VGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99
G R +FL + L DL Q R G L V GKPEE+ P I K
Sbjct: 102 KGALRAQFLIECLGDLKQSLRKKGLDLLVRHGKPEEILPSIAKA 145
>gi|289670152|ref|ZP_06491227.1| photolyase [Xanthomonas campestris pv. musacearum NCPPB 4381]
Length = 484
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A+ + G + + PLYI PH G + +S
Sbjct: 16 AIVWFRRDLRLEDNPALRAAL----DAGHHPI--PLYIDAPHEEGEWTPGVASRTWRHRS 69
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD RA GS L + G +V ++ + W EP + RD ++ +
Sbjct: 70 LAALDDALRARGSGLVIRAGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRALR 129
Query: 128 EYKVKVEQHVSHTLY 142
E ++ + S L+
Sbjct: 130 ERGIEAQSCNSALLF 144
>gi|443324015|ref|ZP_21052973.1| cryptochrome, DASH family [Xenococcus sp. PCC 7305]
gi|442796190|gb|ELS05502.1| cryptochrome, DASH family [Xenococcus sp. PCC 7305]
Length = 491
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRFLQ 65
W R+ +RLHD+ + A+ Q + PLY D F K F + G R +FL
Sbjct: 9 WYRRDLRLHDHKPMYQALQ------QEAQIIPLYCFDERQFAKTSFGFPKTGAFRSQFLL 62
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+++ADL LGS L V +G PE++ P + K I + + ++ + ++
Sbjct: 63 EAVADLRNSLSQLGSNLIVRRGLPEKIIPSLAKELEISAVYFHGEVTSEELAVEAALQKA 122
Query: 126 AKEYKVKVEQHVSHTLYN 143
+ K+ V++ +TLY+
Sbjct: 123 LSQIKISVKRFWGNTLYH 140
>gi|420239237|ref|ZP_14743574.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF080]
gi|398081725|gb|EJL72497.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF080]
Length = 477
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 5 PECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFL 64
P A+ W RK +RL DNPAL +AI E G ++ P+YI +P +G + +L
Sbjct: 6 PAPAILWFRKDLRLDDNPALHAAI----EAGGPVI--PVYIREPAHLNIGPLGAAQAWWL 59
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLL 105
SLA L ++L L + GK E+V D+ + N K +
Sbjct: 60 HHSLAALKASLKSLSGDLIFISGKAEDVLTDLVRKTNAKTV 100
>gi|110638357|ref|YP_678566.1| deoxyribodipyrimidine photolyase [Cytophaga hutchinsonii ATCC
33406]
gi|110281038|gb|ABG59224.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme)
[Cytophaga hutchinsonii ATCC 33406]
Length = 433
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 7/141 (4%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMR-VGPNRWRFL 64
E V W R+ +RL DN L A+ G +L P++I D + + R F+
Sbjct: 3 EVVVFWFRRDLRLTDNAGLFQALT----SGYAVL--PVFIFDINILNALEHKNDARVEFI 56
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
++ L + + + S + V P E F + K + +K + D EP A KRD + D
Sbjct: 57 HDTIQSLKNELQKIHSDMEVYHATPAEAFEQLVKKYTVKAIYTNTDYEPAAIKRDNEISD 116
Query: 125 MAKEYKVKVEQHVSHTLYNTN 145
A + ++ + ++ N
Sbjct: 117 WAAQQQIAFKSFKDQVIFEKN 137
>gi|227540558|ref|ZP_03970607.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum
ATCC 33300]
gi|227239640|gb|EEI89655.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum
ATCC 33300]
Length = 425
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRFLQ 65
W R +R HDN L ++ ++ ++ P+Y DP +F K + G +R RF+
Sbjct: 9 WFRNDLRFHDNEILFETVS------KSPIIIPVYCFDPRYFSKKSSGHRKTGVHRARFIL 62
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
++ +L +KF A+G L G PEE+ P + + + + ++ VE
Sbjct: 63 DAVRELKEKFAAMGCDLMSFVGYPEEIIPRLAAKYEVNEVFHHREVASRETIISENVETA 122
Query: 126 AKEYKVKVEQHVSHTLYN 143
+ K+ ++ + HTLY+
Sbjct: 123 LWKLKINLKHFIGHTLYH 140
>gi|424813932|ref|ZP_18239110.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
gi|339757548|gb|EGQ42805.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
Length = 471
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
AV IR+ +R HDN AL+ A +E + PLY++D + + +G R +F
Sbjct: 2 TAVTVIRRSLREHDNTALVKASEEHDE------VVPLYVVDDSYFEQAELGYPRVKFWHD 55
Query: 67 SLADLDQKFRAL-GSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
SL +L+Q G +L V G P E + + + D PY+KKRD VED
Sbjct: 56 SLKELEQDLSETDGKQLVVRNGDPAEEIQRVVEETEADAVYHNRDYRPYSKKRDQKVED 114
>gi|147866138|emb|CAN79842.1| hypothetical protein VITISV_014519 [Vitis vinifera]
Length = 584
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 12/99 (12%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP------HFRKFMRVGPNRW 61
A+ W R +R+ DN AL+ A Q +L P+Y +DP H+ F + G R
Sbjct: 109 AIVWFRNDLRVLDNEALVKAW----ASSQAVL--PVYCVDPRLFGTTHYFGFPKTGALRA 162
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW 100
+FL + LADL + G L + GKPEE+ P + KT+
Sbjct: 163 QFLIECLADLKRNLMNRGLNLLIQHGKPEEILPSLAKTF 201
>gi|335436625|ref|ZP_08559418.1| deoxyribodipyrimidine photo-lyase [Halorhabdus tiamatea SARL4B]
gi|334897588|gb|EGM35719.1| deoxyribodipyrimidine photo-lyase [Halorhabdus tiamatea SARL4B]
Length = 470
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+HW R+ +R+ DN L E G+ +L P ++ DP GP R L +++
Sbjct: 3 IHWHRRDLRVADNRGLAGD---NIEAGEGPVL-PAFVFDPAV--LAHAGPPRVAALLEAV 56
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
++L +R GS L V +G P+ V P + + + +TW D +KRD V +
Sbjct: 57 SELRDAYRERGSDLVVARGDPQTVLPTLADEFGAERVTWNRDYTRLGRKRDAAVRE 112
>gi|413955020|gb|AFW87669.1| hypothetical protein ZEAMMB73_818499 [Zea mays]
Length = 578
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 3 GTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-------HFRKFMR 55
G AV W R +R+ DN ALL A + +L P+Y +DP H+ F +
Sbjct: 76 GGVGVAVVWFRNDLRVIDNEALLRAW----AASEAVL--PVYCVDPRVFAGSTHYFGFPK 129
Query: 56 VGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99
G R +FL + L DL Q R G L V GKPEE+ P I K
Sbjct: 130 KGALRAQFLIECLGDLKQSLRKKGLDLLVRHGKPEEILPSIAKA 173
>gi|195651415|gb|ACG45175.1| photolyase/blue-light receptor PHR2 [Zea mays]
Length = 446
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRK----FMRVGPNRWRFLQ 65
W R +RLHD+ +A G + L P+++ DP F K F R GP R FL
Sbjct: 112 WFRADLRLHDHEPFHAA------AGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLL 165
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDI 96
S+ADL + RA G L V G PE V P++
Sbjct: 166 DSVADLRRSLRARGGDLVVRVGMPEVVIPEL 196
>gi|92429524|gb|ABD93506.2| DNA photolyase protein [Solanum lycopersicum]
Length = 189
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 11/140 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRVGPNRWRFLQ 65
W R +R+HDN L +A N +++ + +Y DP F + GP R FL
Sbjct: 1 WFRNDLRVHDNECLNAAHN------ESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLI 54
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
S+ADL + +A GS L V GKPE V ++ K + + ++ K + ++ +
Sbjct: 55 DSVADLRKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAV 114
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
K+ ++V+ TLY+ +
Sbjct: 115 MKDEGLEVKYFWGSTLYHVD 134
>gi|448717562|ref|ZP_21702731.1| deoxyribodipyrimidine photolyase [Halobiforma nitratireducens JCM
10879]
gi|445785862|gb|EMA36647.1| deoxyribodipyrimidine photolyase [Halobiforma nitratireducens JCM
10879]
Length = 470
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW R+ +R+ DN L A G + + PL++LDP + P R L ++L
Sbjct: 3 VHWHRRDLRVRDNRGLARA-----GSGSDDRIVPLFVLDPTILE--HASPVRVSCLLEAL 55
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+ L +++R G L V +G+ +V P + ++ + ++W D A++RD V ++
Sbjct: 56 SGLRKQYRERGGDLLVRRGEASDVVPAVASEYDAEAVSWNEDYSGLARERDRAVTATLED 115
Query: 129 YKVKVE 134
+ VE
Sbjct: 116 DGIAVE 121
>gi|343084950|ref|YP_004774245.1| DNA photolyase FAD-binding protein [Cyclobacterium marinum DSM 745]
gi|342353484|gb|AEL26014.1| DNA photolyase FAD-binding protein [Cyclobacterium marinum DSM 745]
Length = 434
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRKFMRVGPNRWRFL 64
+ + W R+ +RL DN L +A Y+NEK N+L PL+I D + K R +F+
Sbjct: 3 KVTLFWFRRDLRLSDNIGLFTA--YENEK--NVL--PLFIFDENILEKLENKNDARVQFI 56
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
+ L + S + V GKP +F + K + I+ + D EPYA+ RD +E
Sbjct: 57 HNQVKKLHSALKDYDSSILVKIGKPLAIFEALTKAYAIQNVYTNRDYEPYARDRDEKIEQ 116
Query: 125 MAKE 128
E
Sbjct: 117 FLAE 120
>gi|406662067|ref|ZP_11070173.1| Deoxyribodipyrimidine photo-lyase [Cecembia lonarensis LW9]
gi|405554054|gb|EKB49180.1| Deoxyribodipyrimidine photo-lyase [Cecembia lonarensis LW9]
Length = 433
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRKFMRVGPNRWRFL 64
+ ++ W R+ +RL DN L A N + +NIL P++I D K R F+
Sbjct: 3 KVSIFWFRRDLRLEDNTGLYHAYN----QEKNIL--PIFIFDRDILDKLEDKKDARVTFI 56
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
+ L + + G+ + GKP EV+ ++ +++I+ + D EPYAK+RD V
Sbjct: 57 HHQIDILQKHLQGFGTSILTKYGKPLEVWKELLDSYDIENVYTNRDYEPYAKERDKEVAA 116
Query: 125 MAKEYKVK 132
+ K + V+
Sbjct: 117 LLKSHGVQ 124
>gi|327274302|ref|XP_003221917.1| PREDICTED: cryptochrome DASH-like [Anolis carolinensis]
Length = 525
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 13/146 (8%)
Query: 5 PECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK-----FMRVGP 58
P A+ +R +R HDN L A ++ + + PLY DP H+ + F + GP
Sbjct: 6 PRTALCLLRNDLRCHDNEVLHWAQSHADR------IVPLYCFDPRHYAQTYHYNFPKTGP 59
Query: 59 NRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPD-IFKTWNIKLLTWEYDIEPYAKK 117
R RFL +S+ DL + + GS L V +GKPE+V D I + ++ +++ +
Sbjct: 60 FRLRFLLESVKDLRETLKKKGSNLVVRKGKPEDVVRDLIIQLGSVASVSFHEEATKEELD 119
Query: 118 RDGLVEDMAKEYKVKVEQHVSHTLYN 143
+ + + E+ V+V+ TLY+
Sbjct: 120 VEKALIRVCTEHGVEVQTFWGSTLYH 145
>gi|86134119|ref|ZP_01052701.1| deoxyribodipyrimidine photo-lyase, class I [Polaribacter sp.
MED152]
gi|85820982|gb|EAQ42129.1| deoxyribodipyrimidine photo-lyase, class I [Polaribacter sp.
MED152]
Length = 434
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
V W R+ +RL DN +A+ K ++ +L P++I D + R F+
Sbjct: 5 VTVFWFRRDLRLDDNIGFYNAL-----KSEHKVL-PIFIFDKEILSKLPKDDARVTFIYD 58
Query: 67 SLADLDQKFRA-LGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+L ++ + + GS + + G PE VF ++ K + I + D EPYA KRD +E +
Sbjct: 59 TLQEMRGELQDNYGSSIAMFHGNPESVFSELIKNYTIDAVFTNRDYEPYATKRDESIEQL 118
Query: 126 AKEYKVKVEQHVSHTLY 142
E ++ + ++
Sbjct: 119 LSENDIEFKTFKDQVIF 135
>gi|402495080|ref|ZP_10841814.1| deoxyribodipyrimidine photo-lyase [Aquimarina agarilytica ZC1]
Length = 433
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
+ + W R+ +RL DN L A++ + +N+L P++I D + R F+
Sbjct: 3 DITIFWFRRDLRLTDNTGLFFALS----ENKNVL--PIFIFDTEILNSLPKKDARLNFIY 56
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
SL +++ + + + GKP ++F + K NI + +D EPYA+ RD + D
Sbjct: 57 DSLLEINLQLNKENKGISLYHGKPLDIFKQLCKEINITSVYTNHDYEPYAQNRDTEIADF 116
>gi|448612276|ref|ZP_21662501.1| deoxyribodipyrimidine photolyase [Haloferax mucosum ATCC BAA-1512]
gi|445741508|gb|ELZ93008.1| deoxyribodipyrimidine photolyase [Haloferax mucosum ATCC BAA-1512]
Length = 482
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW R+ +R+ DN L +A E G + P+++ D + G R R+L +L
Sbjct: 3 VHWHRRDLRVADNRGLTTAA----EAGP---VAPVFVFDESVLE--HAGSPRVRYLLDAL 53
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
A+L +R+LGS L V +G P V P + + + + W A++RD V E
Sbjct: 54 AELRASYRSLGSDLLVARGDPRTVVPAVATALDAERVVWNEGYSGLARERDAAVRLALDE 113
Query: 129 YKVKVE 134
V E
Sbjct: 114 EGVSRE 119
>gi|357417378|ref|YP_004930398.1| deoxyribodipyrimidine photo-lyase [Pseudoxanthomonas spadix BD-a59]
gi|355334956|gb|AER56357.1| Deoxyribodipyrimidine photo-lyase [Pseudoxanthomonas spadix BD-a59]
Length = 471
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGP--NRWRFLQ 65
A+ W R +RL DNPAL +A+ E G + + P+YI PH G N WR
Sbjct: 4 ALVWFRSDLRLADNPALHAAL----EAGFDPV--PVYIHAPHEEGRWAPGAASNAWR--H 55
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+SL LD R GSRL V +G V + + + L W EP + RD ++
Sbjct: 56 RSLKALDLALRQRGSRLLVRRGDSAMVLQQLIEQSRAQALFWNRKYEPATQPRDAAIKQA 115
Query: 126 AKEYKVKV 133
K+ V+V
Sbjct: 116 LKQRHVQV 123
>gi|296081780|emb|CBI20785.3| unnamed protein product [Vitis vinifera]
Length = 586
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 12/99 (12%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP------HFRKFMRVGPNRW 61
A+ W R +R+ DN AL+ A Q +L P+Y +DP H+ F + G R
Sbjct: 90 AIVWFRNDLRVLDNEALVKAW----ASSQAVL--PVYCVDPRLFGTTHYFGFPKTGALRA 143
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW 100
+FL + LADL + G L + GKPEE+ P + KT+
Sbjct: 144 QFLIECLADLKRNLMNRGLNLLIQHGKPEEILPSLAKTF 182
>gi|302844305|ref|XP_002953693.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f.
nagariensis]
gi|300261102|gb|EFJ45317.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f.
nagariensis]
Length = 1025
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 3 GTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK-----FMRVG 57
G + V W R +RLHDN + A+ + ++G+ + P+Y DP + G
Sbjct: 5 GCGKRVVLWFRNDLRLHDNYIVHDAVQ-RVKRGEASEVLPVYCFDPRVYGTTPWGHFKTG 63
Query: 58 PNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFK 98
+R FL + + DL + R +GS L V GKPEEV P + +
Sbjct: 64 AHRAAFLLECVTDLKSRLRDVGSDLLVAFGKPEEVLPGLLE 104
>gi|390440296|ref|ZP_10228639.1| Cryptochrome DASH [Microcystis sp. T1-4]
gi|389836306|emb|CCI32765.1| Cryptochrome DASH [Microcystis sp. T1-4]
Length = 485
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-----RVGPNRWRFLQ 65
W R +R+HD+ A+ A+ + E + P Y D F + G R +FL
Sbjct: 6 WYRNDLRVHDHEAIYQAVQEQFE------IIPFYCFDERQFGFTSYGFPKTGKFRAKFLL 59
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+ADL Q +LG L + +GKPEE+ P + + I + + ++ + V
Sbjct: 60 ESVADLRQSLESLGGNLIIRRGKPEELIPQLVQELQIARVYYHQEVTAEELAVEKAVNKA 119
Query: 126 AKEYKVKVEQHVSHTLYN 143
+ V+++ + TLY+
Sbjct: 120 LSGFPVQIKTFWTATLYH 137
>gi|434387065|ref|YP_007097676.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
gi|428018055|gb|AFY94149.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
Length = 511
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN + A N + P +I+DP F + +G R RFL +SL D
Sbjct: 5 WFRRDLRLTDNEIVTLAT------ADNAPVLPFFIIDPWFYTWADIGTARVRFLFESLID 58
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDI 96
LD++ + LGSRL + +G V ++
Sbjct: 59 LDRQLQELGSRLVLFEGNSTTVIQNL 84
>gi|124007987|ref|ZP_01692687.1| deoxyribodipyrimidine photo-lyase [Microscilla marina ATCC 23134]
gi|123986571|gb|EAY26370.1| deoxyribodipyrimidine photo-lyase [Microscilla marina ATCC 23134]
Length = 447
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 28/136 (20%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF------RKFMRVG-- 57
V W R+ +RLHDN L A+ KNE QN+L P++I D H +K +RV
Sbjct: 3 SITVFWFRRDLRLHDNTGLYEAL--KNE--QNVL--PIFIFDRHILDDLEDKKDLRVAYI 56
Query: 58 PNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFK--------TWNIKLLTWEY 109
+ +QQSLAD L S L V PE+VF + + T+ +K + +
Sbjct: 57 YAALQQIQQSLAD------DLQSSLKVYYDYPEQVFEQLTQAGITLNGETYQVKSVYTNH 110
Query: 110 DIEPYAKKRDGLVEDM 125
D EPYA++RD V+ +
Sbjct: 111 DYEPYARQRDEKVQQI 126
>gi|225429814|ref|XP_002280771.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Vitis vinifera]
Length = 549
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 12/99 (12%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP------HFRKFMRVGPNRW 61
A+ W R +R+ DN AL+ A Q +L P+Y +DP H+ F + G R
Sbjct: 53 AIVWFRNDLRVLDNEALVKAW----ASSQAVL--PVYCVDPRLFGTTHYFGFPKTGALRA 106
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW 100
+FL + LADL + G L + GKPEE+ P + KT+
Sbjct: 107 QFLIECLADLKRNLMNRGLNLLIQHGKPEEILPSLAKTF 145
>gi|374632521|ref|ZP_09704895.1| deoxyribodipyrimidine photolyase [Metallosphaera yellowstonensis
MK1]
gi|373526351|gb|EHP71131.1| deoxyribodipyrimidine photolyase [Metallosphaera yellowstonensis
MK1]
Length = 438
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 15/133 (11%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRKFMRVGPNRWRFLQ 65
CA + R+ +RL+DN L+ A NE + P++ LDP + P F+
Sbjct: 3 CAFVF-RRDLRLYDNTGLMLAGEECNE------VIPIFFLDPRQVEDNPYLSPRALEFML 55
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
QSL +LD++ + LGSRL+VV+ PE + I ++ + YD P+++ RD E M
Sbjct: 56 QSLENLDEELQDLGSRLHVVKAIPEALIGKI----QVEAVYLNYDYTPFSRARD---EGM 108
Query: 126 AKEYKVKVEQHVS 138
+ + K ++ +S
Sbjct: 109 KEALRAKGKKLIS 121
>gi|300771338|ref|ZP_07081214.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861]
gi|300762008|gb|EFK58828.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861]
Length = 425
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRFLQ 65
W R +R HDN L ++ ++ ++ P+Y DP +F K + G +R RF+
Sbjct: 9 WFRNDLRFHDNEILFETVS------KSPIIIPVYCFDPRYFSKKSSGHRKTGVHRARFIL 62
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
++ +L +KF A+G L G PEE+ P + + + + ++ VE
Sbjct: 63 DAVRELKEKFVAMGCDLMSFVGYPEEIIPRLAAKYEVNEVFHHREVASRETIISENVETA 122
Query: 126 AKEYKVKVEQHVSHTLYN 143
+ K+ ++ + HTLY+
Sbjct: 123 LWKLKINLKHFIGHTLYH 140
>gi|387792261|ref|YP_006257326.1| deoxyribodipyrimidine photolyase [Solitalea canadensis DSM 3403]
gi|379655094|gb|AFD08150.1| deoxyribodipyrimidine photolyase [Solitalea canadensis DSM 3403]
Length = 434
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRKFMRVGPNRWRFLQQ 66
V W+R+ +RL DN AL A+ ++ +LL L+I D + R F+
Sbjct: 6 TVCWLRRDLRLEDNAALYHAL----KQASPVLL--LFIFDTTILNQLEDKNDARVTFIHD 59
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
L L+ + LGS L V G P ++ ++ + + IK + +D EPYA +RD ++++
Sbjct: 60 QLCALNDELVKLGSSLLVKHGTPSAIWTELIQEYPIKTVYANHDYEPYATQRDQSIKELL 119
Query: 127 KEYKVK 132
++ ++
Sbjct: 120 QQSGIE 125
>gi|92429526|gb|ABD93507.2| DNA photolyase protein [Solanum melongena]
Length = 187
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 11/138 (7%)
Query: 13 RKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRVGPNRWRFLQQS 67
R +R+HDN L N N + ++L P+Y DP F + GP R FL +S
Sbjct: 2 RNDLRVHDNECL----NAANNESMSVL--PVYCFDPRDYGKSSSGFDKTGPYRATFLIES 55
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
+ADL + +A GS L V GKPE V ++ K + + ++ K + ++ + K
Sbjct: 56 VADLRKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMK 115
Query: 128 EYKVKVEQHVSHTLYNTN 145
+ ++V+ TLY+ +
Sbjct: 116 DEGLEVKYFWGSTLYHID 133
>gi|443309078|ref|ZP_21038849.1| deoxyribodipyrimidine photolyase, partial [Synechocystis sp. PCC
7509]
gi|442780877|gb|ELR90999.1| deoxyribodipyrimidine photolyase, partial [Synechocystis sp. PCC
7509]
Length = 282
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 11/138 (7%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R DN + + N + P +I+DP F VG R RFL +SL
Sbjct: 3 ILWFRRDLRWSDNEIVTLST------ADNAEVLPCFIIDPWFYSQAEVGKARVRFLFESL 56
Query: 69 ADLDQKFRALGSRLYVVQGKP----EEVFPDIFKTWNIKLLTWEYDIEP-YAKKRDGLVE 123
+LD R+ GS+LY+ +G +E+ + + + L + +DI+ Y +RD +
Sbjct: 57 ENLDSNLRSRGSQLYLFEGSSVSVLQELTRQLLQKGDRPKLFFNHDIQAQYGIERDRQII 116
Query: 124 DMAKEYKVKVEQHVSHTL 141
D +E+ ++ Q +++ L
Sbjct: 117 DFYREHSLEYHQGLNNFL 134
>gi|257053657|ref|YP_003131490.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940]
gi|256692420|gb|ACV12757.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940]
Length = 478
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 23/152 (15%)
Query: 5 PECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMR--------- 55
PE AV W+R+ +R DN L +A + P+Y +P R++ +
Sbjct: 2 PETAVVWLRRDLRTRDNATLAAACAADR-------VLPVYCFEP--RRYGQRAFGGAASF 52
Query: 56 ----VGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDI 111
VG R +F ++++ DL + R +GS L+V G+P+ V PD+ + + L ++
Sbjct: 53 EYDGVGAGRAQFEREAVGDLRDRLREIGSDLFVRHGRPDAVLPDLVEAVDADHLHYQTLP 112
Query: 112 EPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
P + R+ V E V VE+H +HTL++
Sbjct: 113 IPEERTREHQVRRALPE-AVTVERHWTHTLHH 143
>gi|307151428|ref|YP_003886812.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822]
gi|306981656|gb|ADN13537.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822]
Length = 476
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R+ DN L SA K+ K + ++ LDP+ V P R +L L
Sbjct: 6 LFWHRRDLRISDNIGL-SAARQKSPK-----IVGIFCLDPNILNKDDVAPARVTYLIGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L Q+++ GS+L +++G+P + P + T + W D+EPYAK RD V ++ +E
Sbjct: 60 QELQQQYQQAGSQLLILRGEPSQAIPRLAATLKASAVFWNLDVEPYAKNRDEQVINVLQE 119
Query: 129 YKVKVEQHVSHTLY 142
+ E L+
Sbjct: 120 KGIARENFWDQLLH 133
>gi|6118527|gb|AAF04135.1|AF191033_3 DNA photolyase [Mycobacterium smegmatis]
Length = 431
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W+R+ +RL D PAL +A + ++LL +++DP + G R FL SL +
Sbjct: 2 WLRRDLRLGDLPALQAA---RGTDDSSVLL--CFVVDPRLAR--SSGERRLAFLFDSLRE 54
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
LD K L RL VV+G+P+E P + + + + + D P+ ++RD V + E
Sbjct: 55 LDDK---LDGRLLVVRGRPDEEIPRLARAVDAEAVHISADFTPFGRRRDEAVAEALGEVP 111
Query: 131 VKV 133
++
Sbjct: 112 LEA 114
>gi|443625802|ref|ZP_21110240.1| putative Deoxyribodipyrimidine photo-lyase [Streptomyces
viridochromogenes Tue57]
gi|443340760|gb|ELS54964.1| putative Deoxyribodipyrimidine photo-lyase [Streptomyces
viridochromogenes Tue57]
Length = 461
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 16 MRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKF 75
+R+HDNP L++A+ KG ++ PL+++D R+ V PNR FL SLADLD
Sbjct: 12 LRVHDNPVLVAAL-----KGSEYVV-PLFVVDTGMRRTGFVVPNRAAFLADSLADLDSAL 65
Query: 76 RALGSRLYVVQG 87
RA G RL V G
Sbjct: 66 RARGGRLVVRVG 77
>gi|58581149|ref|YP_200165.1| photolyase [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84623072|ref|YP_450444.1| photolyase [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|58425743|gb|AAW74780.1| photolyase [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84367012|dbj|BAE68170.1| photolyase [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 484
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A+ + G + + PLYI PH G + +S
Sbjct: 16 AIVWFRRDLRLQDNPALRAAL----DAGHHPI--PLYIDAPHEEGEWTPGAASRTWRHRS 69
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA L+ RALGS L + G +V + + W EP + RD ++ +
Sbjct: 70 LAALEDALRALGSGLVIRAGDSAQVLDAVIAQTGAVAVYWNRKYEPATQPRDAQIKRALR 129
Query: 128 EYKVKVE 134
E ++ +
Sbjct: 130 ERGIEAQ 136
>gi|302765677|ref|XP_002966259.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii]
gi|300165679|gb|EFJ32286.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii]
Length = 345
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 11/148 (7%)
Query: 3 GTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-----HFRKFMRVG 57
G ++ W R +R+HDN AL +A N++ +++ P+Y DP F + G
Sbjct: 17 GMRRASIVWFRNDLRVHDNEALAAA----NKESLSVI--PVYCFDPKDYGKSASGFDKTG 70
Query: 58 PNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKK 117
P R +FL + +A+L R GS L V G P EV I K L ++
Sbjct: 71 PYRAKFLVECVANLRDNLRERGSELVVRIGNPVEVLSTIAKAVGADGLYAHQEVSSEELG 130
Query: 118 RDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
+ V K+ V V+ TL++ +
Sbjct: 131 MEDKVTSALKDQNVDVKFFWGSTLFHVD 158
>gi|448592357|ref|ZP_21651464.1| deoxyribodipyrimidine photolyase [Haloferax elongans ATCC BAA-1513]
gi|445731362|gb|ELZ82946.1| deoxyribodipyrimidine photolyase [Haloferax elongans ATCC BAA-1513]
Length = 480
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+HW R+ +R DN L +A + ++ PL++ D + G R R++ +L
Sbjct: 3 LHWHRRDLRTADNRGLATAAAEDED-----VVAPLFVFDDAVLE--HAGAPRVRYMLDAL 55
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
A+L +R GS L V +G P + P + + + + W D AK+RD VE
Sbjct: 56 AELRASYRGRGSDLLVARGDPRSLVPAVAEALGSERVVWNVDYSGLAKERDQAVE 110
>gi|434388808|ref|YP_007099419.1| cryptochrome, DASH family [Chamaesiphon minutus PCC 6605]
gi|428019798|gb|AFY95892.1| cryptochrome, DASH family [Chamaesiphon minutus PCC 6605]
Length = 503
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 11/137 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRFLQ 65
W R +RLHD+ L A+ + G +I+ P Y D F + F + G R +FL
Sbjct: 9 WYRNDLRLHDHQPLTQAL----KDGASII--PFYCFDDRQFGQTSFGFPKTGGFRAQFLL 62
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+AD +R+LGS L + +G EE+ P + + I + + ++ P +E
Sbjct: 63 ESVADFQHSYRSLGSELIIRRGLTEEIIPQLVEPLGITDVYYHQEVTPEEIAVSTALEAA 122
Query: 126 AKEYKVKVEQHVSHTLY 142
K V HTL+
Sbjct: 123 LKAVNVNCRSFWGHTLH 139
>gi|302793095|ref|XP_002978313.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii]
gi|300154334|gb|EFJ20970.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii]
Length = 345
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 11/148 (7%)
Query: 3 GTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-----HFRKFMRVG 57
G ++ W R +R+HDN AL +A N++ +++ P+Y DP F + G
Sbjct: 17 GMRRASIVWFRNDLRVHDNEALAAA----NKESLSVI--PVYCFDPKDYGKSASGFDKTG 70
Query: 58 PNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKK 117
P R +FL + +A+L R GS L V G P EV I K L ++
Sbjct: 71 PYRAKFLVECVANLRDNLRERGSELVVRIGNPVEVLSTIAKAVGADGLYAHQEVSSEELG 130
Query: 118 RDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
+ V K+ V V+ TL++ +
Sbjct: 131 MEDKVTSALKDQNVDVKFFWGSTLFHVD 158
>gi|188575662|ref|YP_001912591.1| photolyase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188520114|gb|ACD58059.1| photolyase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 472
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A+ + G + + PLYI PH G + +S
Sbjct: 4 AIVWFRRDLRLQDNPALRAAL----DAGHHPI--PLYIDAPHEEGEWTPGAASRTWRHRS 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA L+ RALGS L + G +V + + W EP + RD ++ +
Sbjct: 58 LAALEDALRALGSGLVIRAGDSAQVLDAVIAQTGAVAVYWNRKYEPATQPRDAQIKRALR 117
Query: 128 EYKVKVE 134
E ++ +
Sbjct: 118 ERGIEAQ 124
>gi|332671236|ref|YP_004454244.1| DNA photolyase FAD-binding protein [Cellulomonas fimi ATCC 484]
gi|332340274|gb|AEE46857.1| DNA photolyase FAD-binding protein [Cellulomonas fimi ATCC 484]
Length = 450
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW R+ +RL DNPAL++A+ ++ PL+++DP GP R +L +SL
Sbjct: 4 VHWFRRDLRLADNPALVAAVEAARRADDAVV--PLFVVDPGLWT-AAAGP-RVAYLARSL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
LD AL RL V G+P++V P + + + EPY ++RD V
Sbjct: 60 RALDA---ALDGRLVVRHGRPQDVVPAVAREVEAPTVHVTAATEPYGRRRDDAV 110
>gi|325981909|ref|YP_004294311.1| deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212]
gi|325531428|gb|ADZ26149.1| Deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212]
Length = 434
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 7/143 (4%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
+ V W R+ +RL DN L A+ GQ +L P++I DP + R F
Sbjct: 2 SASLVVFWFRRDLRLDDNVGLSHAL----ASGQPVL--PVFIFDPSILTGLPENDARVTF 55
Query: 64 LQQSLADLDQKFRA-LGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
+ +L L + S + + G EVF I + ++ + +D EPYA++RD V
Sbjct: 56 IYDTLQTLRTQLEERYSSSIALYYGNSIEVFDQILRLHSVTAVYANHDYEPYARERDEAV 115
Query: 123 EDMAKEYKVKVEQHVSHTLYNTN 145
+ K V + H L+ N
Sbjct: 116 CEWLKARSVAFNTYKDHVLFEKN 138
>gi|404260535|ref|ZP_10963820.1| deoxyribodipyrimidine photo-lyase [Gordonia namibiensis NBRC
108229]
gi|403400974|dbj|GAC02230.1| deoxyribodipyrimidine photo-lyase [Gordonia namibiensis NBRC
108229]
Length = 428
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W+R+ +RL D PAL +A + ++LL +++DP K G R FL SL +
Sbjct: 2 WLRRDLRLSDLPALSTA---RGTDDSSVLL--CFVVDPRLEK--SSGERRLAFLFDSLRE 54
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
+D K L +L VV+G+P+E P + K + + + D P+ ++RD V + E
Sbjct: 55 VDAK---LDGKLLVVRGRPDEEIPRLAKVVDAEAVHISADFTPFGRRRDEAVAEALGEIP 111
Query: 131 VKV 133
++
Sbjct: 112 LEA 114
>gi|441499038|ref|ZP_20981228.1| Deoxyribodipyrimidine photolyase [Fulvivirga imtechensis AK7]
gi|441437283|gb|ELR70637.1| Deoxyribodipyrimidine photolyase [Fulvivirga imtechensis AK7]
Length = 431
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R+ +RL DN L A+ + +LL L+I D + + R F+ + +
Sbjct: 6 VFWFRRDLRLDDNRGLYYAL----KDNAPVLL--LFIFDKNILDDLPKDDPRVTFIHEQI 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
++Q + + L V G P+ V+ + KT NI+ + +D EPYA+KRD + D+ K
Sbjct: 60 TVINQALQQKNTSLVVKYGTPDAVWNTLIKTHNIQKVYTNHDYEPYARKRDQSIADLLKN 119
Query: 129 YKV 131
+
Sbjct: 120 SNI 122
>gi|87300679|ref|ZP_01083521.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
gi|87284550|gb|EAQ76502.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
Length = 499
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN L +A + +++ DP + P R FL +SL +
Sbjct: 9 WHRRDLRLADNLGLAAA------ARATAAVTGVFVFDPALLDAPDLSPARLWFLSESLRE 62
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
L ++R GSRL +++G P EV P + + +++ W D+EP + RD
Sbjct: 63 LQGRWREAGSRLLLLRGDPAEVLPQLAQAAGAQVVAWNRDVEPDGRARD 111
>gi|428203429|ref|YP_007082018.1| DASH family cryptochrome [Pleurocapsa sp. PCC 7327]
gi|427980861|gb|AFY78461.1| cryptochrome, DASH family [Pleurocapsa sp. PCC 7327]
Length = 488
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 11/140 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRVGPNRWRFLQ 65
W R +R+HDN + A+ EK Q I P+Y D + F + G R +FL+
Sbjct: 9 WYRNDLRIHDNKLIYQALK---EKAQII---PVYCFDKRQFVQTYFGFPKTGKFRAQFLR 62
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+ADL + LGS L V G PE++ P + + NI + + ++ + ++
Sbjct: 63 ESVADLRNSLQKLGSNLIVRLGFPEKIIPALAQELNIDAVYYHEEVTSEELAVEKSLKKA 122
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
+ VKV TLY+ +
Sbjct: 123 LSQIGVKVNSFWGATLYHPD 142
>gi|146297827|ref|YP_001192418.1| deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101]
gi|146152245|gb|ABQ03099.1| Deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101]
Length = 431
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+ W R+ +RL DN L A+ ++ + PL+I D + R F+ S
Sbjct: 7 SFFWFRRDLRLEDNTGLFHALQ------SDLPVIPLFIFDEDILDNLPKNDARVSFIYDS 60
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L ++ + S + + +GK V+ + ++I+ + + D EP+A KRD + + K
Sbjct: 61 LQKINNELNTFESSILIKKGKTTAVWKSLLSEFDIQNVFFNKDYEPFAIKRDTAICSLLK 120
Query: 128 EYKVKVEQHVSHTLY 142
E V+ H ++
Sbjct: 121 ENNVECFSFKDHVIF 135
>gi|257053940|ref|YP_003131773.1| Deoxyribodipyrimidine photo-lyase [Halorhabdus utahensis DSM 12940]
gi|256692703|gb|ACV13040.1| Deoxyribodipyrimidine photo-lyase [Halorhabdus utahensis DSM 12940]
Length = 470
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 9 VHWIRKGMRLHDNPALL-SAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+HW R+ +RL DN AL I +E+ + +++ DP + GP R L +
Sbjct: 3 IHWHRRDLRLADNRALAGDGIETNDEQ-----VLGVFVFDPAVLE--HAGPARVVALLDA 55
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
+A L + +R GS L + G P P + T+ +L+TW + P A+ RD V
Sbjct: 56 VAALREAYRERGSDLVLASGDPVAELPTLATTYGAELVTWNREYSPLARDRDAAV 110
>gi|404444701|ref|ZP_11009854.1| deoxyribodipyrimidine photo-lyase [Mycobacterium vaccae ATCC 25954]
gi|403653381|gb|EJZ08370.1| deoxyribodipyrimidine photo-lyase [Mycobacterium vaccae ATCC 25954]
Length = 447
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AV W+R+ +RL D PAL +A + + G +L Y+LDP R GP R ++L +
Sbjct: 3 AVLWLRRDLRLADLPALRAAAD-TDGTGTEVL--ACYVLDPRLRA--SSGPRRLQYLYDA 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
L D+ R+L RL V +G P P + + + D P++++RD
Sbjct: 58 LRDVH---RSLDGRLLVTEGDPRHRIPALAEAVGASSVHVSDDFTPFSRRRD 106
>gi|359457825|ref|ZP_09246388.1| deoxyribodipyrimidine photolyase [Acaryochloris sp. CCMEE 5410]
Length = 484
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 11/106 (10%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFR----KFMRVGPNRWRFLQ 65
W R +RLHD+ L A+ N + P Y DP F F + GP R +FL
Sbjct: 6 WFRNDLRLHDHAPLHQAVR------SNADVIPCYCFDPRQFGLTPFGFPKTGPFRAQFLL 59
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDI 111
+S+ADL Q R S L + QG PE V P++ + N++++ + ++
Sbjct: 60 ESVADLRQSLRGKQSDLILRQGYPETVVPELAQALNVEVVYFNREV 105
>gi|254412957|ref|ZP_05026729.1| cryptochrome, DASH family [Coleofasciculus chthonoplastes PCC 7420]
gi|196180121|gb|EDX75113.1| cryptochrome, DASH family [Coleofasciculus chthonoplastes PCC 7420]
Length = 488
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 11/140 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK-----FMRVGPNRWRFLQ 65
W R +RLHD+ L A+ K + + P Y D F + G R +FL
Sbjct: 9 WYRNDLRLHDHEPLHQALQTKAQ------VIPCYCFDDRLFHTTSFGFPKTGAFRAKFLL 62
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+ADL + R+ GS L V +G PE V P + K +I + + ++ + +++
Sbjct: 63 ESVADLRENVRSRGSNLLVRRGLPENVIPTLAKELDITTVYFHQEVTSEEVAVESALKNA 122
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
E + V+ TLY+ +
Sbjct: 123 LSEIGITVQTFWGSTLYHPD 142
>gi|453382894|dbj|GAC82556.1| deoxyribodipyrimidine photo-lyase [Gordonia paraffinivorans NBRC
108238]
Length = 431
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W+R+ +RL D PAL +A + ++LL +++DP + G R FL SL +
Sbjct: 2 WLRRDLRLGDLPALQAA---RGTDDSSVLL--CFVVDPRLER--SSGERRPAFLFDSLRE 54
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
LD K L RL VV+G+P+E P + + + + + D P+ ++RD V + E
Sbjct: 55 LDDK---LDGRLLVVRGRPDEEIPRLARAVDAEAVHISADFTPFGRRRDEAVAEALGEVP 111
Query: 131 VKV 133
++
Sbjct: 112 LEA 114
>gi|221134512|ref|ZP_03560817.1| DNA photolyase [Glaciecola sp. HTCC2999]
Length = 487
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 7/134 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R +RL+DNPAL AI E G + P++I D ++G +L QSL
Sbjct: 7 IMWFRHDLRLNDNPALYRAIELAGEHGTVL---PIFIHDTSAPDLAKLGEASQWWLHQSL 63
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
A L + G L + QG P + + ++ + W EP+ RD ++ K+
Sbjct: 64 ASLSA---STGQHLQLFQGDPLAIIESLINQYDATHVIWNRGYEPWQITRDSHIKATLKD 120
Query: 129 YKVKVEQHVSHTLY 142
V+V H L+
Sbjct: 121 C-VEVLSCNGHLLW 133
>gi|307153163|ref|YP_003888547.1| DASH family cryptochrome [Cyanothece sp. PCC 7822]
gi|306983391|gb|ADN15272.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822]
Length = 495
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 11/140 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRFLQ 65
W R +RLHD+ L A+ K E + P Y D FRK F + G R +FL
Sbjct: 9 WYRNDLRLHDHEPLNKALKEKAE------IIPFYCFDERQFRKTSYGFPKTGNFRAQFLL 62
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+SLADL + + GS L + +G PE++ P + + + + + ++ + +E
Sbjct: 63 ESLADLKKSLQERGSDLIIRKGLPEKIIPQLAQELKLTAVYYHQEVTAEELAVEKALESG 122
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
+ +VK E TLY+ +
Sbjct: 123 LNKIRVKTESFWGATLYHPD 142
>gi|261856009|ref|YP_003263292.1| cryptochrome, DASH family [Halothiobacillus neapolitanus c2]
gi|261836478|gb|ACX96245.1| cryptochrome, DASH family [Halothiobacillus neapolitanus c2]
Length = 447
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 11/86 (12%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK-----FMRVGPNRWRF 63
++W R+ +RL DN + A + Q L P+YILDP + F R+GP+R
Sbjct: 5 LYWFRQDLRLRDNRCFIRACD------QADALLPVYILDPAMEQPTRWGFDRIGPHRRVV 58
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKP 89
L Q+L LD++ R GS L ++QG+P
Sbjct: 59 LGQALRGLDRQLRQRGSGLCLLQGQP 84
>gi|321451724|gb|EFX63284.1| hypothetical protein DAPPUDRAFT_335673 [Daphnia pulex]
Length = 141
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 65/148 (43%), Gaps = 49/148 (33%)
Query: 9 VHWIRKGMRLHDNPALLS---------AINYKNEKG---QNILLKPL-YILDPHFRKFMR 55
HW RKG+ +PALLS N+ + N L+P+ ILDP F K R
Sbjct: 8 THWFRKGL----HPALLSFECPREGKIVFNHAFQSCVGESNYELRPVKVILDPWFVKNAR 63
Query: 56 VGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYA 115
+ D QK+ FK WNIK LT+E DIEPYA
Sbjct: 64 MP-----------RDHQQKY---------------------FKEWNIKKLTFEVDIEPYA 91
Query: 116 KKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
K +D ++ +A + V V VSHT+Y+
Sbjct: 92 KTQDEEIKKLADHHSVPVVAKVSHTIYD 119
>gi|149279055|ref|ZP_01885189.1| deoxyribodipyrimidine photolyase-class I [Pedobacter sp. BAL39]
gi|149230334|gb|EDM35719.1| deoxyribodipyrimidine photolyase-class I [Pedobacter sp. BAL39]
Length = 433
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
E ++ W+R+ +RL D+ AL A+ KG + +L L+I D + + V R F+
Sbjct: 4 EISICWLRRDLRLEDHTALYHAL-----KGPHPVLL-LFIFDTNILSKLPVKDARVTFIY 57
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
++ +L+++ S + V G PE+ + ++ + + +K + +D EPYA +RD + +
Sbjct: 58 NTIKELNEQLAQHDSSIVVKHGSPEKAWTELMEEYQVKSVFTNHDYEPYAAERDDSLAEF 117
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
+ + + ++ +
Sbjct: 118 LRSEHISFHTYKDQVIFEKD 137
>gi|225011846|ref|ZP_03702284.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
MS024-2A]
gi|225004349|gb|EEG42321.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
MS024-2A]
Length = 434
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+ W R+ +R+ DN L A+ KG+N ++ P++I D K + R + +
Sbjct: 5 TLFWFRRDLRIQDNCGLYHAL-----KGENRVI-PIFIFDKEILKKLPKQDARVEMILLA 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L +D + + G P+ +F + K WNI+ + D EPYA +RD ++ + +
Sbjct: 59 LGAIDIAMKRNRCNVGKYHGTPKAIFSKLIKQWNIEKVICNEDYEPYASERDSEIKTLLE 118
Query: 128 EYKVKVEQHVSHTLY 142
++ E + ++
Sbjct: 119 AAGIQFECYKDQVIF 133
>gi|383625568|ref|ZP_09949974.1| deoxyribodipyrimidine photo-lyase [Halobiforma lacisalsi AJ5]
gi|448700496|ref|ZP_21699556.1| deoxyribodipyrimidine photolyase [Halobiforma lacisalsi AJ5]
gi|445779586|gb|EMA30507.1| deoxyribodipyrimidine photolyase [Halobiforma lacisalsi AJ5]
Length = 489
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 16/140 (11%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQ--------------NILLKPLYILDPHFRKFM 54
VHW RK +R+ DN L A N + + + PL++LDP +
Sbjct: 3 VHWHRKDLRVRDNRGLGRAAAMGNRDDEGEGTGEGESEGTGEDAHIVPLFVLDPTVLE-- 60
Query: 55 RVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPY 114
P R L ++L L ++R LGS L V +G+ EV P + ++ + +TW D
Sbjct: 61 HASPVRVSCLLEALGGLRDRYRELGSDLLVFRGEASEVVPRVAAEYDAEAVTWGEDYSGL 120
Query: 115 AKKRDGLVEDMAKEYKVKVE 134
A +RD V ++ V+ E
Sbjct: 121 AAERDRAVTAALEDDGVETE 140
>gi|404450628|ref|ZP_11015608.1| deoxyribodipyrimidine photolyase [Indibacter alkaliphilus LW1]
gi|403763683|gb|EJZ24627.1| deoxyribodipyrimidine photolyase [Indibacter alkaliphilus LW1]
Length = 432
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 7/128 (5%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPN-RWRFL 64
+ ++ W R+ +RL DN L A E+ +N+L PL+I D + + + R F+
Sbjct: 3 QISIFWFRRDLRLEDNTGLYYAF----EQEENVL--PLFIFDRNILDDLEDKKDARVEFI 56
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
+ + + S + V GKP +++ ++ + ++I+ + D EPYAK+RD V+
Sbjct: 57 HDQIQKISNGLKDFESSILVKYGKPLDIWQELLEEYDIQNVYTNRDYEPYAKERDTQVKK 116
Query: 125 MAKEYKVK 132
+ KE ++
Sbjct: 117 LLKERNIQ 124
>gi|254445216|ref|ZP_05058692.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
gi|198259524|gb|EDY83832.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
Length = 472
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DNPAL A+ G+ +L P+Y+ D G +L SL
Sbjct: 8 IVWFRRDLRLADNPALSEAL----ASGEPVL--PVYVFDEEGEGDSPDGAASKWWLHHSL 61
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
A LD+ + LGSRL +++G + ++ + + + W EP +RD
Sbjct: 62 ASLDESLKGLGSRLVLLRGSSKSALVELCREMGARAVFWNRRYEPAVVERD 112
>gi|254516979|ref|ZP_05129037.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR5-3]
gi|219674484|gb|EED30852.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR5-3]
Length = 438
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A++W R +RLHD+P L++A +LL L+ + +G R RF+ +S
Sbjct: 7 AIYWFRNDLRLHDHPGLVAAAAADE-----LLLVYLWPRQRAWCNTQGLGEQRERFICES 61
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLL 105
L +L + + LG +L V+QG PE V PD+ + + + +
Sbjct: 62 LTELAKDLQPLGQKLLVLQGSPELVIPDLVRDYGVNAI 99
>gi|146303224|ref|YP_001190540.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM
5348]
gi|145701474|gb|ABP94616.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM
5348]
Length = 435
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 22/127 (17%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWR---- 62
CA + R+ +RL DN LL A+ +E + P+++LDP ++G N ++
Sbjct: 3 CAFVF-RRDLRLDDNTCLLRALQECDE------VVPVFVLDPR-----QLGDNPYKSAFA 50
Query: 63 --FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
F+ SL DLD + + SRL+++QG PE+V P++ ++ + + D P++ RD
Sbjct: 51 LGFMVDSLLDLDMQLKHRSSRLHILQGYPEKVLPEL----KVEAIYFNEDYTPFSLNRDN 106
Query: 121 LVEDMAK 127
+ + +
Sbjct: 107 AIRETMR 113
>gi|320160751|ref|YP_004173975.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
gi|319994604|dbj|BAJ63375.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
Length = 466
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
WIR+ +RLHD+PAL Y +KG+ I P++ILD R + R +FL L
Sbjct: 7 WIRRDLRLHDHPAL----EYALQKGRVI---PVFILDD--RLLQKEASKRKQFLFSGLRQ 57
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
LD+ R GS+L + +G+P + + + + D PYA++RD
Sbjct: 58 LDEDLRKRGSQLIIRRGEPLAELTRLIQETGAEEIVALEDYSPYARRRDS 107
>gi|257058615|ref|YP_003136503.1| DASH family cryptochrome [Cyanothece sp. PCC 8802]
gi|256588781|gb|ACU99667.1| cryptochrome, DASH family [Cyanothece sp. PCC 8802]
Length = 488
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRFLQ 65
W R +RLHD+ + A+ K + + P Y D HF+ F + G R +FL
Sbjct: 11 WYRNDLRLHDHQPMFQAVKKKAQ------IIPFYCFDDRHFKTTSFGFPKTGNFRSQFLL 64
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
QS+ +L + + LGS L + +G PE++ P+I + I + + ++ K + +E
Sbjct: 65 QSIDNLRKNLQQLGSNLVIRRGYPEKIIPEICQELAIDAVYFHQEVTSEEIKVETALEKA 124
Query: 126 AKEYKVKVEQHVSHTLY 142
+ VK+ TLY
Sbjct: 125 LTQMGVKLNPFWGTTLY 141
>gi|255083581|ref|XP_002508365.1| predicted protein [Micromonas sp. RCC299]
gi|226523642|gb|ACO69623.1| predicted protein [Micromonas sp. RCC299]
Length = 488
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-------RVGPNRW 61
V W R +RL DN A+ A + +L PLY+ DP R F + G +R
Sbjct: 3 VVWFRNDLRLQDNYAVKQAESIATRTAGCDVL-PLYVFDP--RTFAPSSWGSPKCGGHRG 59
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFP 94
RF +S+ +L + RA+GS L V GKPEEV P
Sbjct: 60 RFQLESVLNLKRNLRAIGSDLLVAVGKPEEVIP 92
>gi|407775677|ref|ZP_11122970.1| deoxyribodipyrimidine photo-lyase type I [Thalassospira
profundimaris WP0211]
gi|407281354|gb|EKF06917.1| deoxyribodipyrimidine photo-lyase type I [Thalassospira
profundimaris WP0211]
Length = 492
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AV W R +RL DNPALL+A+ + E +L P++ILD + G +W +L++S
Sbjct: 7 AVMWFRNDLRLADNPALLAAVKWAKENDGAVL--PVFILDDVISDQLG-GATKW-WLEKS 62
Query: 68 LADLDQKFRALGSR-----LYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
L L++ LG L + +G + V I ++K + W + + KRD +
Sbjct: 63 LTALNRNIADLGDTKSDRALRLFKGNAKTVLETIADDKSVKAVFWNRLYDKPSTKRDTEI 122
Query: 123 EDMAKEYKVKVEQHVSHTLY 142
+ + + + E H ++ L+
Sbjct: 123 KAALQNHGLTCESHKANLLF 142
>gi|390955825|ref|YP_006419583.1| DASH family cryptochrome [Aequorivita sublithincola DSM 14238]
gi|390421811|gb|AFL82568.1| cryptochrome, DASH family [Aequorivita sublithincola DSM 14238]
Length = 474
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVG-----PNRWR 62
A+ W + +RLHDN AL +AI N+ + LY +D K + +G NR
Sbjct: 11 ALMWFKNDLRLHDNEALCNAI------ACNLPVIYLYCIDSRIFKSLNLGFRKADANRAI 64
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIK 103
FL+QSL DL K LG L + G PE++ + +K
Sbjct: 65 FLKQSLEDLQIKLEELGGHLIIEYGIPEDIIASYVTNYTVK 105
>gi|433419586|ref|ZP_20405291.1| DASH family cryptochrome, partial [Haloferax sp. BAB2207]
gi|432199407|gb|ELK55585.1| DASH family cryptochrome, partial [Haloferax sp. BAB2207]
Length = 202
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 18/150 (12%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----------FRKFMR 55
++ W R+ +RLH + P+Y +DP F +
Sbjct: 5 TSLAWFRRDLRLH-------DNAALAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEK 57
Query: 56 VGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYA 115
G +R RF +SLADL R GS L V +G+PE V P++ T + +T P
Sbjct: 58 TGAHRARFRLESLADLRASLRDRGSDLVVREGRPESVLPEVAATVDADFVTVHTRPTPEE 117
Query: 116 KKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
+ + VE ++ V++ + HTL + +
Sbjct: 118 SRVESAVETELRDGGVELRRFWGHTLTHLD 147
>gi|345872727|ref|ZP_08824656.1| DNA photolyase FAD-binding [Thiorhodococcus drewsii AZ1]
gi|343918048|gb|EGV28819.1| DNA photolyase FAD-binding [Thiorhodococcus drewsii AZ1]
Length = 477
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVG-PNRWRFLQQ 66
A+ W R+ +RL DNPAL +A+ G+ +L P+YI PH G +RW +L +
Sbjct: 3 AILWFRRDLRLDDNPALAAAL----ASGRPVL--PVYIHAPHEEAPWAPGAASRW-WLHR 55
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SL LD+ + GSRL++ +G I + W +P + RD +E
Sbjct: 56 SLQSLDRSLQDRGSRLWITRGDSLAELRRIVAATGAAEVHWNRLYDPRIRDRDAAIEQAI 115
Query: 127 KEYKVKVEQHVSHTLY 142
+ + E H L+
Sbjct: 116 RADGLHCESHNGSLLF 131
>gi|441513241|ref|ZP_20995072.1| deoxyribodipyrimidine photo-lyase [Gordonia amicalis NBRC 100051]
gi|441451858|dbj|GAC53033.1| deoxyribodipyrimidine photo-lyase [Gordonia amicalis NBRC 100051]
Length = 454
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W+R+ +RL D PAL +A +G + + +++DP K G R FL SL +
Sbjct: 2 WLRRDLRLSDLPALAAA------RGTDSSVLLCFVVDPRLEK--SSGERRLAFLFDSLRE 53
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
+D K L RL VV+G+PEE P + + + D P+ ++RD V++
Sbjct: 54 VDAK---LDGRLLVVRGRPEEEIPRLARAVGAGSVHISGDFSPFGRRRDEAVDE 104
>gi|158335578|ref|YP_001516750.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
gi|158305819|gb|ABW27436.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
Length = 484
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRFLQ 65
W R +RLHD+ L A+ N + P Y DP F + F + GP R +FL
Sbjct: 6 WFRNDLRLHDHAPLHQAVR------SNADVIPCYCFDPRQFGQTPFGFPKTGPFRAQFLL 59
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+ADL Q R S L + QG PE V P++ + ++ + + ++ + + +
Sbjct: 60 ESVADLRQSLRGKQSDLILRQGHPETVLPELAQALKVETVYFNREVTAEEIEVENRLRSA 119
Query: 126 AKEYKVKVEQHVSHTLYN 143
+ ++ + S TL++
Sbjct: 120 LADLGIECLRFWSSTLFH 137
>gi|298162590|gb|ADI59662.1| cryptochrome [Amphiprion melanopus]
Length = 308
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 94 PDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145
P +FK W I L++EYD EP+ K+RD ++ +A E V+V +SHTLY+ +
Sbjct: 1 PRLFKEWKINRLSYEYDSEPFGKERDAAIKKLASEAGVEVTVRISHTLYDLD 52
>gi|148260613|ref|YP_001234740.1| deoxyribodipyrimidine photo-lyase [Acidiphilium cryptum JF-5]
gi|146402294|gb|ABQ30821.1| deoxyribodipyrimidine photo-lyase type I [Acidiphilium cryptum
JF-5]
Length = 471
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W+R +RL DNPAL +AI E+G N+L P+++LDP G +RW +L SLA
Sbjct: 7 WLRNDLRLADNPALAAAI----EEG-NVL--PVFVLDPAAETG---GASRW-WLHHSLAA 55
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L+ F A G RL + +G + P + + + EP+ ++ D V +E
Sbjct: 56 LEADFTARGGRLVLRRGDAAAIVPALAREIGAVAVHAGRAHEPWLREADRRVAAALQEAG 115
Query: 131 VKVEQHVSHTLY 142
+ +H S ++
Sbjct: 116 IGFHRHRSALMF 127
>gi|344341302|ref|ZP_08772223.1| Deoxyribodipyrimidine photo-lyase [Thiocapsa marina 5811]
gi|343798882|gb|EGV16835.1| Deoxyribodipyrimidine photo-lyase [Thiocapsa marina 5811]
Length = 481
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 5 PECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVG-PNRWRF 63
P + W R+ +RL DNPAL +A+ + L P+Y+ DP G +RW +
Sbjct: 2 PSTVILWFRRDLRLDDNPALQAALIDCDR------LVPVYVHDPDSEAPWAPGAASRW-W 54
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L SLA +DQ + G+ L + +G I + W +P + RDG ++
Sbjct: 55 LHGSLASMDQALQTFGTGLLIARGDALAELRRIVAATGATRIHWNRLYDPTTRDRDGRIK 114
Query: 124 DMAKEYKVKVEQHVSHTLY 142
+ ++ E H + L+
Sbjct: 115 QALRADGLRAESHNASLLF 133
>gi|448726891|ref|ZP_21709278.1| deoxyribodipyrimidine photolyase [Halococcus morrhuae DSM 1307]
gi|445793190|gb|EMA43777.1| deoxyribodipyrimidine photolyase [Halococcus morrhuae DSM 1307]
Length = 465
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+HW R+ +R DN A G +L P+++ DP ++ P R FL +L
Sbjct: 3 IHWHRRDLRTADNRA------LAAAAGDGPVL-PVFVFDPDVLQY--ASPPRVAFLLAAL 53
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
L + +R GS LY +G P EV P I + L W +D +++RD
Sbjct: 54 DSLQESYRERGSDLYTAEGDPAEVLPGIADEHGVDELFWNHDYTGLSQERD 104
>gi|94501552|ref|ZP_01308070.1| putative deoxyribodipyrimidine photolyase [Bermanella marisrubri]
gi|94426370|gb|EAT11360.1| putative deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
Length = 485
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 14/124 (11%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W ++ +RLHD+ AL AI+ G+ LL LYIL+P + WRF+ +SL
Sbjct: 3 VVWFKRDLRLHDHDALFKAISL----GKPCLL--LYILEPSLIEDTHYDDRHWRFVYESL 56
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DL+++ G RL V++G+ +V I + I + ++ + G+ +++
Sbjct: 57 QDLNKQLSPYGHRLTVIKGEALDVLQAIHQRHEIHTI--------FSHQEIGIARTFSRD 108
Query: 129 YKVK 132
K++
Sbjct: 109 RKIE 112
>gi|95929775|ref|ZP_01312516.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM
684]
gi|95134071|gb|EAT15729.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM
684]
Length = 475
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RLHDNPALL+A + P+YILD R+G +L +SL
Sbjct: 10 IMWFRQDLRLHDNPALLTATRLGP-------VIPIYILDDEHAADQRMGAASRCWLHRSL 62
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
L+Q+ L L + +G + + + + ++ + +TW EP+ RD ++++ +
Sbjct: 63 DALNQQ---LDGHLQLFRGPADTLLEQLVQHYDCRTVTWNRCYEPWRINRDRIIKEKLQG 119
Query: 129 YKVKV 133
+ V
Sbjct: 120 LGITV 124
>gi|326403807|ref|YP_004283889.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
gi|325050669|dbj|BAJ81007.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
Length = 471
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W+R +RL DNPAL +AI E+G N+L P+++LDP G +RW +L SLA
Sbjct: 7 WLRNDLRLADNPALAAAI----EEG-NVL--PVFVLDPAAETG---GASRW-WLHHSLAA 55
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L+ F A G RL + +G + P + + + EP+ ++ D V +E
Sbjct: 56 LEADFAARGGRLVLRRGDAAAIVPALAREIGAVAVHAGRAHEPWLREADRRVAAALQEAG 115
Query: 131 VKVEQHVSHTLY 142
+ +H S ++
Sbjct: 116 IGFHRHRSALMF 127
>gi|428226857|ref|YP_007110954.1| deoxyribodipyrimidine photo-lyase type I [Geitlerinema sp. PCC
7407]
gi|427986758|gb|AFY67902.1| deoxyribodipyrimidine photo-lyase type I [Geitlerinema sp. PCC
7407]
Length = 481
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 6/134 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN AL +A + ++ + ++ LDP + V P R ++ L
Sbjct: 6 LFWHRRDLRLSDNVALAAAREHTSK------VVGVFCLDPSILERDDVAPARVTYMVGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
A L + + GS L +++G P + P + + + + W +D+EPYA+ RD V KE
Sbjct: 60 AALQEAYARTGSELLILKGNPVQAIPALAAALSAQAVFWNWDVEPYAQARDEQVRHALKE 119
Query: 129 YKVKVEQHVSHTLY 142
+ + L+
Sbjct: 120 RGIGLHTSWDQLLH 133
>gi|89075135|ref|ZP_01161571.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
gi|89049089|gb|EAR54655.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
Length = 443
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 25/149 (16%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMR-----VGPNRWR 62
A++W +RLHDNP L A + + L +Y ++P ++F R VG R R
Sbjct: 5 ALYWFTNDLRLHDNPILHQAYEHCDS------LLCVYFMEPKKQQFNRYQLISVGEIRHR 58
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FL Q+L L LG RL V+Q P P + + + I L+ Y + G
Sbjct: 59 FLLQALQALQSNLATLGQRLLVMQADPMVSMPVLIEQYGINLI--------YRSRHCGWY 110
Query: 123 EDMAKEYKVKVEQHV------SHTLYNTN 145
E Y + H+ +HTLY+ +
Sbjct: 111 EQQQWCYLKQCYPHLRFVEVDTHTLYSQD 139
>gi|344344031|ref|ZP_08774896.1| Deoxyribodipyrimidine photo-lyase [Marichromatium purpuratum 984]
gi|343804315|gb|EGV22216.1| Deoxyribodipyrimidine photo-lyase [Marichromatium purpuratum 984]
Length = 480
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGP-NRWRFLQQSLA 69
W R+ +RL DNPAL +A+ G IL P+YI P G +RW +L SL
Sbjct: 8 WFRRDLRLDDNPALEAAL----RAGARIL--PVYIHAPDEEAPWAPGAASRW-WLHHSLE 60
Query: 70 DLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEY 129
LD RA G+RL++ QGK + + +T + + W +P + RD ++ +
Sbjct: 61 SLDGALRARGARLWIGQGKSLALLRRLAETSGARAIHWNRLYDPATRARDTEIKQQLRAA 120
Query: 130 KVKVEQHVSHTLY 142
+ H L+
Sbjct: 121 GLDCASHNGALLF 133
>gi|301617223|ref|XP_002938047.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome DASH-like [Xenopus
(Silurana) tropicalis]
Length = 523
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP------HFRKFM 54
M + +R +RLHDN L ++ + I+ PLY DP H+ F
Sbjct: 1 MAARARVIICLLRNDLRLHDNEVL----HWAHRNADQIV--PLYCFDPRHYGGTHYFNFP 54
Query: 55 RVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFK 98
+ GP+R +FL +S+ DL + GS L + +GKPEE+ + K
Sbjct: 55 KTGPHRLKFLLESVQDLRNTLKERGSNLLLRRGKPEEIIAGLVK 98
>gi|345320146|ref|XP_003430248.1| PREDICTED: cryptochrome-1-like [Ornithorhynchus anatinus]
Length = 53
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 6/55 (10%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWR 62
AVHW RKG+RLHDNPAL + +G + ++ +YILDP F VG NRWR
Sbjct: 5 AVHWFRKGLRLHDNPALRDCV-----RGADT-VRCVYILDPWFAGSSNVGINRWR 53
>gi|374628763|ref|ZP_09701148.1| deoxyribodipyrimidine photo-lyase type I [Methanoplanus limicola
DSM 2279]
gi|373906876|gb|EHQ34980.1| deoxyribodipyrimidine photo-lyase type I [Methanoplanus limicola
DSM 2279]
Length = 476
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPN-RWRFLQQ 66
+VH R+ +RL DN ALL+A+ E+ + ++ P+YI +P F + P R F+ +
Sbjct: 9 SVHIFRRDLRLDDNTALLNAL----ERSERVI--PVYIAEPEFSINNQNIPEVRHSFIIR 62
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
SL +LD + + SRLY E+ + K + D PYA+KRD
Sbjct: 63 SLNELDLELKEKESRLYYFSDGTEKALEYLIKETGAEAFFANRDYSPYAQKRD 115
>gi|294500818|ref|YP_003564518.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
gi|294350755|gb|ADE71084.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
Length = 475
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
WIRK RL DNPAL A + ++ P+YI D + M W L +L D
Sbjct: 8 WIRKDFRLVDNPALFHA-------AKEGMVVPVYIHDDYEESSMGSASKWW--LHHALND 58
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
+ + L V +G P++V + N + + W EP+A KRD ++ E +
Sbjct: 59 FKTSIKKIEGTLIVQKGNPKDVLQKLLHETNAQDIYWNSRYEPHALKRDKELQAFFSEQQ 118
Query: 131 VKV 133
+ +
Sbjct: 119 INI 121
>gi|376316713|emb|CCG00097.1| deoxyribodipyrimidine photo-lyase type I [uncultured Flavobacteriia
bacterium]
Length = 433
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +R DN L A K + Q + + + ILD + R+ F+ +S
Sbjct: 4 ALFWHRRDLRFEDNAGLFQA-QKKADVVQAVFIFDITILDKLLKNDQRI-----IFIHRS 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
+ +L ++++ G L V G P+E+ P I K + + D EPYA +RD + D K
Sbjct: 58 IQNLKKEYQRFGGDLKVYHGDPKELIPKIAKELKVDSVYTNRDYEPYALERDKFIFDKLK 117
Query: 128 EYKV 131
+
Sbjct: 118 TLSI 121
>gi|397662777|ref|YP_006504315.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
gi|395126188|emb|CCD04368.1| Deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
Length = 471
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 9/135 (6%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPA + A ++ + ++ PLYI D K +G + +L S
Sbjct: 4 ALMWFRQDLRLTDNPAFIEACSHHD------IVIPLYIYD---DKCSVLGQAQAWWLHHS 54
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L L + G L + +G P+E+ ++ N++ + W EP RD ++
Sbjct: 55 LIALGKSLNQKGLNLVLRKGSPQEIIVELVAQHNVESVYWNRSYEPQVIARDKKIKLALG 114
Query: 128 EYKVKVEQHVSHTLY 142
E ++KV+ + L+
Sbjct: 115 EREIKVQSFNGNLLH 129
>gi|219116188|ref|XP_002178889.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum
tricornutum CCAP 1055/1]
gi|217409656|gb|EEC49587.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum
tricornutum CCAP 1055/1]
Length = 610
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 24/116 (20%)
Query: 3 GTPECAVHWIRKG-MRLHDNPALLSAINYKNEKGQNILLKPLYILD-------------- 47
+ + +HW R G +RL DNPAL+ + ++ ++ + P++ D
Sbjct: 47 ASSQVVLHWFRHGDLRLLDNPALI----HSSKTAESCV--PVFCFDDSVYGNDNRTPDTR 100
Query: 48 -PHF--RKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW 100
PH R ++ GP R +F+ S+ DL + ++ GS LYV GKP +VF + W
Sbjct: 101 APHSNDRGQLKCGPRRAQFVLDSVQDLRRSLQSRGSALYVAHGKPAQVFQRLVDAW 156
>gi|119490469|ref|ZP_01622930.1| deoxyribodipyrimidine photolyase [Lyngbya sp. PCC 8106]
gi|119453940|gb|EAW35095.1| deoxyribodipyrimidine photolyase [Lyngbya sp. PCC 8106]
Length = 512
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 60/123 (48%), Gaps = 19/123 (15%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN + A E + P +I+DP F + +G R +FL +SL
Sbjct: 3 ILWFRRDLRLIDNDIVAQAAATDEE------ILPCFIIDPWFYQQPDIGGMRVQFLFESL 56
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEY--------DIE-PYAKKRD 119
A LD R LGSRLY+ +G EV +T +LL Y DI+ Y +KRD
Sbjct: 57 ACLDGSLRDLGSRLYLFEGNSVEV----IQTLTGELLELGYHPRLVFNRDIQVDYGRKRD 112
Query: 120 GLV 122
V
Sbjct: 113 HQV 115
>gi|448739551|ref|ZP_21721563.1| deoxyribodipyrimidine photolyase [Halococcus thailandensis JCM
13552]
gi|445799170|gb|EMA49551.1| deoxyribodipyrimidine photolyase [Halococcus thailandensis JCM
13552]
Length = 465
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 42 PLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWN 101
P+++ DP ++ P R FL +L L + +R GS LY V+G P EV P+I
Sbjct: 29 PVFVFDPDVLQY--ASPPRVAFLLAALDSLQKSYRERGSDLYTVEGDPAEVLPEIADEHG 86
Query: 102 IKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVE 134
+ L W +D A++RD V + E + E
Sbjct: 87 VGELFWNHDYTGLARERDERVREALDEAGIAHE 119
>gi|410615192|ref|ZP_11326218.1| deoxyribodipyrimidine photo-lyase [Glaciecola psychrophila 170]
gi|410165276|dbj|GAC40107.1| deoxyribodipyrimidine photo-lyase [Glaciecola psychrophila 170]
Length = 503
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 14/123 (11%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W+++ +RL D+ AL +A + G +LL LYI++P WRF+ QSL D
Sbjct: 18 WLKRDLRLRDHEALFNA----SIDGTPVLL--LYIIEPILLDDPHYDIRHWRFIWQSLQD 71
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
++Q+ L +L ++QG+ V + KT +IK + Y+ + GL ++
Sbjct: 72 INQQLSPLNCQLLIMQGEATAVLSQLLKTLSIKHI--------YSHQEIGLSNTFERDKA 123
Query: 131 VKV 133
V+V
Sbjct: 124 VRV 126
>gi|425437395|ref|ZP_18817812.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9432]
gi|389677621|emb|CCH93442.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9432]
Length = 485
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-----RVGPNRWRFLQ 65
W R +R+HD+ A+ AI + + + P Y D F + G R +FL
Sbjct: 6 WYRNDLRVHDHEAIYRAIQ------EQLEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLL 59
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+A+L Q LGS L + +GKPEE+ P + + I + + ++ + V
Sbjct: 60 ESVANLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKA 119
Query: 126 AKEYKVKVEQHVSHTLYN 143
V+++ + TLY+
Sbjct: 120 LSIIPVQIKTFWTATLYH 137
>gi|392963931|ref|ZP_10329352.1| cryptochrome, DASH family [Fibrisoma limi BUZ 3]
gi|387846826|emb|CCH51396.1| cryptochrome, DASH family [Fibrisoma limi BUZ 3]
Length = 482
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%)
Query: 5 PECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFL 64
P+ ++W R +RLHDN A+ +E + P + H F + G R FL
Sbjct: 2 PKRILYWFRNDLRLHDNEGFARAVADADEVLPVFVFNPRLFAEVHNLGFKKTGIYRASFL 61
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI 102
+S+ADL Q RA G L + G+P + ++ ++ ++
Sbjct: 62 LESVADLRQSIRAKGGELIIRIGEPANILAELAESADV 99
>gi|318078311|ref|ZP_07985643.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actF]
Length = 487
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 16 MRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKF 75
+RLHD+P L +A+ E + PL++ DP +K NR FL L DLD
Sbjct: 12 LRLHDHPPLRAAVREAEE------VVPLFVRDPGIKKVGFHAANRAAFLADCLGDLDAGL 65
Query: 76 RALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR 118
R G RL V G P +V ++ + + + + YA+ R
Sbjct: 66 RERGGRLVVRAGDPAQVVRELVGSTGAERVHVAAGVSAYARNR 108
>gi|425453111|ref|ZP_18832925.1| Cryptochrome DASH [Microcystis aeruginosa PCC 7941]
gi|425461683|ref|ZP_18841157.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9808]
gi|389764695|emb|CCI09167.1| Cryptochrome DASH [Microcystis aeruginosa PCC 7941]
gi|389825403|emb|CCI24828.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9808]
Length = 485
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-----RVGPNRWRFLQ 65
W R +R+HD+ A+ AI + + + P Y D F + G R +FL
Sbjct: 6 WYRNDLRVHDHEAIYRAIQ------EQLEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLL 59
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+A+L Q LGS L + +GKPEE+ P + + I + + ++ + V
Sbjct: 60 ESVANLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKA 119
Query: 126 AKEYKVKVEQHVSHTLYN 143
V+++ + TLY+
Sbjct: 120 LSIIPVQIKTFWTATLYH 137
>gi|379729344|ref|YP_005321540.1| deoxyribodipyrimidine photolyase [Saprospira grandis str. Lewin]
gi|378574955|gb|AFC23956.1| deoxyribodipyrimidine photolyase [Saprospira grandis str. Lewin]
Length = 466
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 18/107 (16%)
Query: 1 MGGTPECA---VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF------R 51
M P+ A + W R +RLHDN L AI E + P+Y+ D
Sbjct: 3 MSALPKKAKRVIAWFRLDLRLHDNEMLTEAIKAGEE------VYPVYVFDERTFGGKTES 56
Query: 52 KFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFK 98
F + GP R +F+ +++ADL Q+ +ALG L + +GK EE ++FK
Sbjct: 57 GFAKTGPRRCQFIIEAVADLKQQLQALGIDLLIRRGKAEE---EVFK 100
>gi|434387598|ref|YP_007098209.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
gi|428018588|gb|AFY94682.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
Length = 478
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R+ D+ L A N N + ++ D V P R +L L
Sbjct: 8 WHRRDLRVSDSIGLAQACN------TNARVIGVFCFDRAILTNDSVAPARVTYLVGCLQS 61
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L + +R GS+L V+G P P + T + + W DIEPY++ RD + K
Sbjct: 62 LAKDYRRAGSQLLFVEGNPVVKIPLLATTLKAQAVYWHLDIEPYSQTRDESIATTLKSDG 121
Query: 131 VKVEQHVSHTLY 142
++V + L+
Sbjct: 122 IEVHTNWDQLLH 133
>gi|348503387|ref|XP_003439246.1| PREDICTED: cryptochrome DASH-like [Oreochromis niloticus]
Length = 521
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 13/139 (9%)
Query: 12 IRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HF-----RKFMRVGPNRWRFLQ 65
+R +RLHDN ++ ++I+ PLY DP H+ + GP R RFL
Sbjct: 11 LRNDLRLHDN----ELFHWAQRNAEHIV--PLYCFDPTHYVGTYNYSLPKTGPFRLRFLL 64
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW-NIKLLTWEYDIEPYAKKRDGLVED 124
+ + DL GS L V +GKPEEV D+ + ++ + + ++ + V+D
Sbjct: 65 EGIRDLRNTLINKGSNLVVRRGKPEEVVADLIRQLGSVSSVAFHEEVTSEELNVEKRVKD 124
Query: 125 MAKEYKVKVEQHVSHTLYN 143
+ + KVKV TLY+
Sbjct: 125 VCAQMKVKVHTCWGSTLYH 143
>gi|440756671|ref|ZP_20935871.1| cryptochrome DASH [Microcystis aeruginosa TAIHU98]
gi|440172700|gb|ELP52184.1| cryptochrome DASH [Microcystis aeruginosa TAIHU98]
Length = 485
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-----RVGPNRWRFLQ 65
W R +R+HD+ A+ AI + + + P Y D F + G R +FL
Sbjct: 6 WYRNDLRVHDHEAIYRAIQ------EQLEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLL 59
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+A+L Q LGS L + +GKPEE+ P + + I + + ++ + V
Sbjct: 60 ESVANLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKA 119
Query: 126 AKEYKVKVEQHVSHTLYN 143
V+++ + TLY+
Sbjct: 120 LSIIPVQIKTFWTATLYH 137
>gi|410029665|ref|ZP_11279495.1| deoxyribodipyrimidine photolyase [Marinilabilia sp. AK2]
Length = 433
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRKFMRVGPNRWRFLQ 65
++ W R+ +RL DN L A N + +NIL P++I D + K R F+
Sbjct: 4 VSIFWFRRDLRLEDNTGLYYAYN----QEKNIL--PIFIFDRNILDKLEDKKDARVTFIH 57
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+ L + + GS + V G+P E++ ++ +++I + D EPYA RD V+++
Sbjct: 58 TQIEKLQNQLKDFGSSMLVKYGEPMEIWKELLNSYSIDNVYTNRDYEPYAISRDKRVKEL 117
Query: 126 AKEYKVK 132
+ V+
Sbjct: 118 LSGHGVQ 124
>gi|443320341|ref|ZP_21049448.1| deoxyribodipyrimidine photolyase [Gloeocapsa sp. PCC 73106]
gi|442789946|gb|ELR99572.1| deoxyribodipyrimidine photolyase [Gloeocapsa sp. PCC 73106]
Length = 478
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R+ DN L A + + + + D + P R +L L
Sbjct: 6 IFWHRRDLRVSDNLGLSLACSDSSR------VIGCFCFDLDLLSGDDIAPARISYLIGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
L +++ G L +++GKP E+ P + + + W D+EPYAK+RD LV+ ++
Sbjct: 60 QLLQAQYQERGGELLLLRGKPTEIIPRLGIQLQARGVYWNLDVEPYAKERDRLVQRELEQ 119
Query: 129 YKVKVE 134
K+ V+
Sbjct: 120 QKIVVK 125
>gi|254476074|ref|ZP_05089460.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11]
gi|214030317|gb|EEB71152.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11]
Length = 478
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 11/142 (7%)
Query: 3 GTPECA--VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR 60
G P A + WIR+ +RL DN AL +A+ + G +L P++I D + + P R
Sbjct: 4 GIPANAPVIWWIRRDLRLSDNAALTAAV----DSGAPVL--PVFIFDSQ-DEDLGAAP-R 55
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
+R L L L Q+ LGSRL + +G +V D+ K + + W +P ++ RD
Sbjct: 56 FR-LGLGLEHLAQRLERLGSRLILRRGSALQVLQDLLKETGAQAVHWTRAYDPASRARDT 114
Query: 121 LVEDMAKEYKVKVEQHVSHTLY 142
L+++ K V + + L+
Sbjct: 115 LIKETLKSQGVAAHSYSGNLLF 136
>gi|90578157|ref|ZP_01233968.1| deoxyribodipyrimidine photolyase [Photobacterium angustum S14]
gi|90441243|gb|EAS66423.1| deoxyribodipyrimidine photolyase [Photobacterium angustum S14]
Length = 443
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 25/149 (16%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMR-----VGPNRWR 62
++W +RLHDNP L A + + L +Y ++P ++F R VG R R
Sbjct: 5 GLYWFTNDLRLHDNPILHQAYEHCDS------LLCVYFMEPQKQQFNRYQLVSVGEIRHR 58
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FL Q+L L LG RL V+Q P P + + + I L+ Y + G
Sbjct: 59 FLLQALQALQSNLATLGQRLLVMQADPMLSMPVLIEQYGINLI--------YRSRHCGWY 110
Query: 123 EDMAKEYKVKVEQHV------SHTLYNTN 145
E Y + H+ +HTLY+ +
Sbjct: 111 EQQQWRYLKQCYPHLRFVEVDTHTLYSQD 139
>gi|331006214|ref|ZP_08329536.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989]
gi|330419971|gb|EGG94315.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989]
Length = 477
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 4 TPE-CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK-----FMRVG 57
TPE + W +R+HDN L A N K + L LY +D + + R+
Sbjct: 6 TPEPTTLLWFTHDLRIHDNALLFYANKINNNKHR---LLCLYCIDEEWFEQDRFGLQRIA 62
Query: 58 PNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLL 105
+RW FL SL L+ + +ALG +L + +G P E+ D+ ++I +
Sbjct: 63 THRWNFLVGSLHALNTELQALGQQLVIAKGNPTEIISDLLSRYSINTV 110
>gi|153209159|ref|ZP_01947255.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat
Q177']
gi|212218603|ref|YP_002305390.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154]
gi|120575482|gb|EAX32106.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat
Q177']
gi|212012865|gb|ACJ20245.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154]
Length = 472
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
+ W R+ +RL DNPAL+ A + L PLYILD + M V RW +L
Sbjct: 2 TTIFWFRQDLRLSDNPALVEAAKSADH------LIPLYILDDQLK--MLVDAQRW-WLYH 52
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SL+ L G+ L + +G + V ++ K + ++ + W EP ++ D +E+
Sbjct: 53 SLSSLQTALSKKGTSLILKKGDTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENRL 112
Query: 127 KEYKVKV 133
V++
Sbjct: 113 PPLSVEI 119
>gi|425471952|ref|ZP_18850803.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9701]
gi|389882102|emb|CCI37425.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9701]
Length = 485
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRVGPNRWRFLQ 65
W R +R+HD+ A+ AI + + + P Y D F + G R +FL
Sbjct: 6 WYRNDLRVHDHEAIHRAIQ------EQLEIIPFYCFDERQFGLTSYGFPKTGKFRAKFLL 59
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+ADL Q LG L + +GKPEE+ P + + I + + ++ + V
Sbjct: 60 ESVADLRQSLENLGGNLIIRRGKPEELIPQLVQELQIAKVYYHQEVTAEELAVEKAVNQA 119
Query: 126 AKEYKVKVEQHVSHTLYN 143
+ V+++ + TLY+
Sbjct: 120 LSGFPVQIKTFWTATLYH 137
>gi|284034972|ref|YP_003384902.1| deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74]
gi|283814265|gb|ADB36103.1| Deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74]
Length = 438
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 13/122 (10%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRW----RFLQQ 66
W+R+ +RLHDN AL A+ + G+ ++ P++I D R + +R FL Q
Sbjct: 9 WLRRDLRLHDNAALYYAL----KSGRPVI--PVFIFD---RVILDALDDRLDRRVEFLVQ 59
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
+ L + LGS + V GKP +V+ ++ +T+ I + +D E YAK+RD + ++
Sbjct: 60 EVNRLHDELAKLGSTIIVRYGKPVDVWKELIETYTIGDVFTNHDYEGYAKERDKAIGELL 119
Query: 127 KE 128
E
Sbjct: 120 AE 121
>gi|186686938|ref|YP_001870131.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
gi|186469290|gb|ACC85090.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
Length = 516
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN + S+ G + + P +I+DP F + VG R RFL +SL
Sbjct: 5 WFRRDLRLTDNEIVTSS------SGNDARVLPFFIIDPWFYTWADVGTARVRFLFESLEK 58
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDI 96
L+ + L SRLY+ +G + ++
Sbjct: 59 LNSNLQKLSSRLYLFEGNSTGIVQEL 84
>gi|237654599|ref|YP_002890913.1| cryptochrome, DASH family [Thauera sp. MZ1T]
gi|237625846|gb|ACR02536.1| cryptochrome, DASH family [Thauera sp. MZ1T]
Length = 515
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK-----FMRVGPNR 60
+ + W R +R+ DN AL+ A L P+Y DP F+R GP+R
Sbjct: 4 DVVIFWFRNDLRVGDNLALVEACASAGR------LLPVYCHDPSADAPTRWGFVRRGPHR 57
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFP 94
FL+ +L DLD RA GS L + G P V P
Sbjct: 58 RAFLEAALGDLDAALRARGSALLQLNGAPRAVLP 91
>gi|326433957|gb|EGD79527.1| cryptochrome DASH [Salpingoeca sp. ATCC 50818]
Length = 552
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 18/134 (13%)
Query: 8 AVHWIRKG-MRLHDNPALLSAINYKNEKGQNILLKPLYILDPH---------FRKFMRVG 57
AV W R +R+HD+ LL A K KG + P+Y DP +F + G
Sbjct: 12 AVVWFRGSDLRIHDHEPLLEAA--KASKGHVV---PVYCFDPRQVGPAAKTRCGQFPKCG 66
Query: 58 PNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKK 117
R RF+ + + DL + + LGS L V G+PEEV PDI +I T + + +
Sbjct: 67 WQRTRFIVECVEDLRRNLQRLGSNLVVRVGEPEEVIPDIV---SITGATEVFGQKEVCSE 123
Query: 118 RDGLVEDMAKEYKV 131
G+ +AK V
Sbjct: 124 ETGVEHRLAKRLSV 137
>gi|456062579|ref|YP_007501549.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium CB]
gi|455439876|gb|AGG32814.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium CB]
Length = 496
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNIL-----LKPLYILDPHFRKFMRVGPNRWR 62
A+ W+R+ +RL+DN AL A+ + + L+PL + D R
Sbjct: 4 ALVWLRRDLRLYDNAALHHALTNNAQVWMTFIFDTEILEPLKVDDQASGALTH--DRRVD 61
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
F+ Q L +D + R G L V GKP P I KT + + +D EP A RD V
Sbjct: 62 FIWQGLQQIDAQLRKQGGGLIVQFGKPTTCIPKIAKTLGVNTVYTNHDYEPSAIARDNSV 121
Query: 123 EDMAKEYKVKVEQHVSHTLY 142
+ ++ + E ++
Sbjct: 122 ATLLEKLGIDFETFKDQVIF 141
>gi|408672799|ref|YP_006872547.1| DNA photolyase FAD-binding protein [Emticicia oligotrophica DSM
17448]
gi|387854423|gb|AFK02520.1| DNA photolyase FAD-binding protein [Emticicia oligotrophica DSM
17448]
Length = 489
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W ++ +RL D+ AL +AI E G++ L+ LYI +P+ P W F+QQSL D
Sbjct: 5 WFKRDLRLSDHAALKAAI----EDGESFLM--LYIWEPNIMADSHYSPRHWNFVQQSLND 58
Query: 71 LDQKFRALGS--RLYVVQGKPEEVFPDIFKTWNIK 103
L+++ R+ ++QG +E+F I + + +K
Sbjct: 59 LNRQLSEANPLLRITILQGNAKEIFHAIHQKYQLK 93
>gi|386713001|ref|YP_006179324.1| deoxyribodipyrimidine photo-lyase [Halobacillus halophilus DSM
2266]
gi|384072557|emb|CCG44047.1| deoxyribodipyrimidine photo-lyase [Halobacillus halophilus DSM
2266]
Length = 499
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W+++ +RL+D+ L A+ + G+ IL P+YI +P + + + F+++SL
Sbjct: 4 VVWLKRDLRLYDHQPLYEAV----QGGEPIL--PIYIAEPSIWQGQELSARHFHFVKESL 57
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLL-TWEYDIEPYAKKRDGLVEDMAK 127
DL + FR G L+ G+ EEV I +T+ +L E + P+ +RD V K
Sbjct: 58 MDLQKSFRQKGGNLFTAIGEIEEVLEGINRTFGEFILHAHEENGTPHTYERDLRVHKWMK 117
Query: 128 E 128
E
Sbjct: 118 E 118
>gi|331694491|ref|YP_004330730.1| deoxyribodipyrimidine photo-lyase [Pseudonocardia dioxanivorans
CB1190]
gi|326949180|gb|AEA22877.1| Deoxyribodipyrimidine photo-lyase [Pseudonocardia dioxanivorans
CB1190]
Length = 462
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+V W R+ +R+ D P L+A + G L L++LDP GP R FL
Sbjct: 5 SVVWFRRDLRVRDQPIFLAAA----DSGPAAL--ALFVLDPAL--LDPSGPARRTFLYGC 56
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
L LD ALG RL VV+G P +V P + + D PY +RD VE+
Sbjct: 57 LRALDD---ALGGRLLVVRGDPADVVPRVAAAVGAGTVHVAADFGPYGTRRDQAVEE 110
>gi|443661557|ref|ZP_21132734.1| cryptochrome DASH [Microcystis aeruginosa DIANCHI905]
gi|159029066|emb|CAO90052.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443332297|gb|ELS46914.1| cryptochrome DASH [Microcystis aeruginosa DIANCHI905]
Length = 485
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 11/138 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-----RVGPNRWRFLQ 65
W R +R+HD+ A+ AI + + + P Y D F + G R +FL
Sbjct: 6 WYRNDLRVHDHEAIYRAIQ------EQLEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLL 59
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+A+L Q LG L + +GKPEE+ P + + I + + ++ + V
Sbjct: 60 ESVANLQQSLEGLGGNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKA 119
Query: 126 AKEYKVKVEQHVSHTLYN 143
V+++ + TLY+
Sbjct: 120 LSGVPVQIKTFWTATLYH 137
>gi|448578492|ref|ZP_21643927.1| deoxyribodipyrimidine photolyase [Haloferax larsenii JCM 13917]
gi|445727033|gb|ELZ78649.1| deoxyribodipyrimidine photolyase [Haloferax larsenii JCM 13917]
Length = 508
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 28/150 (18%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKF-------------M 54
A+ W R+ +RLHDN AL+ A + P+Y DP R +
Sbjct: 6 ALVWFRRDLRLHDNEALVDACGADR-------VVPVYCFDP--RDYCQQSYGGPDSFDVR 56
Query: 55 RVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW---NIKLLTWEYDI 111
+ G +R RF +S+ADL R GS L V G+PE V PD+ ++ + TW
Sbjct: 57 KTGLHRLRFRLESVADLRSSLRDRGSDLVVRIGRPEAVLPDVATAVGADSVSMHTWP--- 113
Query: 112 EPYAKKRDGLVEDMAKEYKVKVEQHVSHTL 141
P ++ + V+ + V+ + HTL
Sbjct: 114 TPEERQVESAVQQALDDVGVEPRRFWGHTL 143
>gi|54025035|ref|YP_119277.1| deoxyribodipyrimidine photolyase [Nocardia farcinica IFM 10152]
gi|54016543|dbj|BAD57913.1| putative deoxyribodipyrimidine photolyase [Nocardia farcinica IFM
10152]
Length = 436
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
A+ + +R+HDNP L +A + G ++ PL+++D H R PNR RFL
Sbjct: 2 TAIALFTRDLRVHDNPVLAAA----RDAGDAVV--PLFVIDAHLVP-DRCPPNRARFLAA 54
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
++ +LD + R G RL V +G + + + + D+ Y+ R + +
Sbjct: 55 AVRELDAELRTRGGRLIVRRGVVADEVARVVDETGARTVHLADDVSGYSAARADALRERL 114
Query: 127 KEYKVKVEQH 136
V++E H
Sbjct: 115 DRRGVRLEPH 124
>gi|297195865|ref|ZP_06913263.1| deoxyribodipyrimidine photolyase [Streptomyces pristinaespiralis
ATCC 25486]
gi|197720806|gb|EDY64714.1| deoxyribodipyrimidine photolyase [Streptomyces pristinaespiralis
ATCC 25486]
Length = 457
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AV +RLHD+P L +A+ +E + PL++LDP PNR FL
Sbjct: 4 AVVLFTSDLRLHDHPPLRAALRAADE------VVPLFVLDPGIGAAGFEAPNRCAFLADC 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LADLD R G RL V G + I + + YA++R+ L+ + +
Sbjct: 58 LADLDASLRERGGRLVVRSGPVAQQVGAIAAECGAGEVHMAAGVTRYARRREELLRTVLR 117
Query: 128 EYKVKVEQH 136
E + H
Sbjct: 118 ERGATLRTH 126
>gi|379733707|ref|YP_005327212.1| Deoxyribodipyrimidine photo-lyase type I (fragment), partial
[Blastococcus saxobsidens DD2]
gi|378781513|emb|CCG01163.1| Deoxyribodipyrimidine photo-lyase type I (fragment) [Blastococcus
saxobsidens DD2]
Length = 199
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
A+ W R+ +RL D+PALL+A + G + P+++ D R + G R RFL
Sbjct: 3 TALLWFRRDLRLRDHPALLTARDAAGPDGDVL---PVFVFD--DRLWGPSGAPRRRFLLD 57
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
LA LD LG L + G P + P + + D PY ++RD VE
Sbjct: 58 CLAALDDD---LGGALVLRSGDPTRLLPALVHEAGATSVHVSADAGPYGRRRDEAVE 111
>gi|425444341|ref|ZP_18824394.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9443]
gi|389730294|emb|CCI05405.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9443]
Length = 485
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRVGPNRWRFLQ 65
W R +R+HD+ A+ AI + + + P Y D F + G R +FL
Sbjct: 6 WYRNDLRVHDHEAIYRAIQ------EQLEIIPFYCFDERQFGLTSYGFPKTGKFRAKFLL 59
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+A+L Q +LGS L + +GKPEE+ P + + I + + ++ + V
Sbjct: 60 ESVANLRQSLESLGSNLIIRRGKPEEIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNKA 119
Query: 126 AKEYKVKVEQHVSHTLYN 143
+++ + TLY+
Sbjct: 120 LSRVPAQIKTFWTATLYH 137
>gi|434399467|ref|YP_007133471.1| cryptochrome, DASH family [Stanieria cyanosphaera PCC 7437]
gi|428270564|gb|AFZ36505.1| cryptochrome, DASH family [Stanieria cyanosphaera PCC 7437]
Length = 488
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRFLQ 65
W R +RLHD+ + A+ E+ Q I P+Y D F++ F + G R +FL
Sbjct: 9 WFRNDLRLHDHKPIYQAVQ---EQAQII---PVYCFDQREFKQTSFGFPKTGNYRAQFLL 62
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+ADL + + LGS L + G PE++ P + + I + + ++ K + ++
Sbjct: 63 ESVADLKKSLQKLGSDLIIYWGFPEQIIPHLAQKLKIDSVYYHQEVTAEELKVEQALKQE 122
Query: 126 AKEYKVKVEQHVSHTLYNT 144
++ K++V TLY T
Sbjct: 123 LQKLKIQVNSFWGATLYLT 141
>gi|317419959|emb|CBN81995.1| Cryptochrome DASH [Dicentrarchus labrax]
Length = 521
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 13/139 (9%)
Query: 12 IRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HF-----RKFMRVGPNRWRFLQ 65
+R +R DN ++ + I+ PLY DP H+ + GP R RFL
Sbjct: 11 LRNDLRFQDN----ELFHWAQRNAEYIV--PLYCFDPRHYVGTYNYNLPKTGPFRLRFLL 64
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW-NIKLLTWEYDIEPYAKKRDGLVED 124
S+ DL + GS L V QGKPEEV D+ K ++ + + ++ + V+D
Sbjct: 65 DSIRDLRNTLLSKGSNLVVRQGKPEEVVADLIKQLGSVSAVAFHEEVTSEELNVEKGVKD 124
Query: 125 MAKEYKVKVEQHVSHTLYN 143
+ + KVKV TLY+
Sbjct: 125 VCAQMKVKVHTCWGSTLYH 143
>gi|284041014|ref|YP_003390944.1| DASH family cryptochrome [Spirosoma linguale DSM 74]
gi|283820307|gb|ADB42145.1| cryptochrome, DASH family [Spirosoma linguale DSM 74]
Length = 487
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 12/94 (12%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF------RKFMRVGPNRWR 62
++W R +RLHDN + A+ E +L P+++ DP + +F R+ R
Sbjct: 5 LYWFRNDLRLHDNEGFVRAL----ENADQVL--PVFVFDPRWFARHSQLEFRRMSAFRAN 58
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDI 96
FL +S+ADL Q R+ G+ L V GKP +V ++
Sbjct: 59 FLLESVADLRQSLRSRGADLIVRVGKPADVLAEL 92
>gi|166366036|ref|YP_001658309.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843]
gi|166088409|dbj|BAG03117.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843]
Length = 485
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 11/140 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-----RVGPNRWRFLQ 65
W R +R+HD+ A+ A+ + E + P Y D F + G R +FL
Sbjct: 6 WYRNDLRVHDHEAIYQAVQEQFE------IIPFYCFDERQFGFTSYGFPKTGKFRAKFLL 59
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+ADL Q +LG L + +GKPE++ P + + I + + ++ + V
Sbjct: 60 ESVADLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNKA 119
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
V+++ + TLY+ +
Sbjct: 120 LSGVPVQIKTFWTATLYHPD 139
>gi|256374682|ref|YP_003098342.1| deoxyribodipyrimidine photo-lyase [Actinosynnema mirum DSM 43827]
gi|255918985|gb|ACU34496.1| Deoxyribodipyrimidine photo-lyase [Actinosynnema mirum DSM 43827]
Length = 421
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMR-VGPNRWRFLQ 65
V W R+ +R+ D+PALL A + + +L P K +R G R FL
Sbjct: 4 STVVWFRRDLRVEDHPALLEAADRADRALALFVLDP---------KLLRPSGKPRTDFLH 54
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
+ L LD + LG RL VV+G P EV P + + + + D PY ++RD V
Sbjct: 55 RCLKSLDDR---LGGRLMVVEGDPVEVVPAVAREIGAETVHVSADTGPYGRRRDEAV 108
>gi|425466604|ref|ZP_18845902.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9809]
gi|389830841|emb|CCI26891.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9809]
Length = 485
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 11/140 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-----RVGPNRWRFLQ 65
W R +R+HD+ A+ A+ + E + P Y D F + G R +FL
Sbjct: 6 WYRNDLRVHDHEAIYQAVQEQFE------IIPFYCFDERQFGFTSYGFPKTGKFRAKFLL 59
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+ADL Q +LG L + +GKPE++ P + + I + + ++ + V
Sbjct: 60 ESVADLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNKA 119
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
V+++ + TLY+ +
Sbjct: 120 LSGVPVQIKTFWTATLYHPD 139
>gi|284989430|ref|YP_003407984.1| Deoxyribodipyrimidine photo-lyase [Geodermatophilus obscurus DSM
43160]
gi|284062675|gb|ADB73613.1| Deoxyribodipyrimidine photo-lyase [Geodermatophilus obscurus DSM
43160]
Length = 454
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL D+PALL A + G + + P+++ DP R + G R +FL
Sbjct: 4 ALLWFRRDLRLADHPALLDA---REAAGPDGAVVPVFVFDP--RLWGPSGLPRRQFLLDC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
LADL + + L + G P V PD+ + + D PY ++RD VE
Sbjct: 59 LADLGAQ---VDGALVMRSGDPARVLPDLVREVGAGSVHVSADTGPYGRERDAAVE 111
>gi|124025078|ref|YP_001014194.1| DNA photolyase [Prochlorococcus marinus str. NATL1A]
gi|123960146|gb|ABM74929.1| putative DNA photolyase [Prochlorococcus marinus str. NATL1A]
Length = 504
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 9/138 (6%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGP--NRWRFLQ 65
++ W R+ +R DN L A KN K L +Y+LDP+ R W FL
Sbjct: 17 SIFWHRRDLRFGDNIGLFEA--SKNSKS----LIGVYVLDPNLLDLNRTTSEAKNW-FLG 69
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+SL +L + + GS L ++ G P E+ + + + + + W +IEPY RD + +
Sbjct: 70 ESLLELQKNWEIRGSLLLILNGDPIELISKLAELVHAECIYWNENIEPYEINRDKQIAEK 129
Query: 126 AKEYKVKVEQHVSHTLYN 143
+ K KV + + N
Sbjct: 130 LSKEKRKVYTFLDQLIVN 147
>gi|297812689|ref|XP_002874228.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297320065|gb|EFH50487.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 566
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP------HFRKFMRVGPNRW 61
+ W R +R+ DN AL YK + LL P+Y LDP HF F + G R
Sbjct: 85 TILWFRNDLRVLDNDAL-----YKAWSSSDTLL-PVYCLDPRLFHTTHFFNFPKTGALRG 138
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFK 98
FL + L DL + G L + GKPEE+ P + K
Sbjct: 139 GFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAK 175
>gi|97047673|sp|Q84KJ5.2|CRYD_ARATH RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
AltName: Full=Cryptochrome-3; Flags: Precursor
Length = 569
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP------HFRKFMRVGPNRW 61
+ W R +R+ DN AL YK + +L P+Y LDP HF F + G R
Sbjct: 86 TILWFRNDLRVLDNDAL-----YKAWSSSDTIL-PVYCLDPRLFHTTHFFNFPKTGALRG 139
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLL 105
FL + L DL + G L + GKPEE+ P + K + + +
Sbjct: 140 GFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTV 183
>gi|22327046|ref|NP_568461.2| cryptochrome DASH [Arabidopsis thaliana]
gi|119390180|pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis
Thaliana
gi|238828067|pdb|2VTB|A Chain A, Structure Of Cryptochrome 3 - Dna Complex
gi|238828069|pdb|2VTB|C Chain C, Structure Of Cryptochrome 3 - Dna Complex
gi|238828070|pdb|2VTB|D Chain D, Structure Of Cryptochrome 3 - Dna Complex
gi|238828071|pdb|2VTB|E Chain E, Structure Of Cryptochrome 3 - Dna Complex
gi|238828072|pdb|2VTB|F Chain F, Structure Of Cryptochrome 3 - Dna Complex
gi|18086429|gb|AAL57669.1| AT5g24850/F6A4_60 [Arabidopsis thaliana]
gi|20857182|gb|AAM26705.1| AT5g24850/F6A4_60 [Arabidopsis thaliana]
gi|332005986|gb|AED93369.1| cryptochrome DASH [Arabidopsis thaliana]
Length = 526
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP------HFRKFMRVGPNRW 61
+ W R +R+ DN AL YK + +L P+Y LDP HF F + G R
Sbjct: 43 TILWFRNDLRVLDNDAL-----YKAWSSSDTIL-PVYCLDPRLFHTTHFFNFPKTGALRG 96
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLL 105
FL + L DL + G L + GKPEE+ P + K + + +
Sbjct: 97 GFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTV 140
>gi|238828068|pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex
Length = 525
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP------HFRKFMRVGPNRW 61
+ W R +R+ DN AL YK + +L P+Y LDP HF F + G R
Sbjct: 43 TILWFRNDLRVLDNDAL-----YKAWSSSDTIL-PVYCLDPRLFHTTHFFNFPKTGALRG 96
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLL 105
FL + L DL + G L + GKPEE+ P + K + + +
Sbjct: 97 GFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTV 140
>gi|399576486|ref|ZP_10770241.1| deoxyribodipyrimidine photo-lyase type i [Halogranum salarium B-1]
gi|399237930|gb|EJN58859.1| deoxyribodipyrimidine photo-lyase type i [Halogranum salarium B-1]
Length = 489
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+HW R+ +R+ DN L A E G + P+++ D R RF+ +L
Sbjct: 3 LHWHRRDLRVADNRGLAMAA----EAGTVV---PVFVFDDEI--LAHAASPRVRFMLDAL 53
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
A+L +R GS L V G P+EV P++ ++ + W D A+ RD V E
Sbjct: 54 AELRAWYRDHGSDLLVAHGDPKEVLPELADEYDADRVVWNKDYSGLARHRDAAVRRALDE 113
Query: 129 YKV 131
V
Sbjct: 114 AGV 116
>gi|338210905|ref|YP_004654954.1| deoxyribodipyrimidine photo-lyase [Runella slithyformis DSM 19594]
gi|336304720|gb|AEI47822.1| Deoxyribodipyrimidine photo-lyase [Runella slithyformis DSM 19594]
Length = 436
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRKFMRVGPNRWRFLQQSLA 69
W R+ +RLHDN L A+ + G +L P++I D K R F+ +++
Sbjct: 9 WFRRDLRLHDNAGLYHAL----KSGNPVL--PVFIFDTEILDKLEDKKDRRVEFIHEAIR 62
Query: 70 DLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
+L + LGS L V GKP +++ + + ++I + +D EPYA RD +
Sbjct: 63 ELHTQLTQLGSTLIVRYGKPADIWQQLSEEYDIAEVHTNHDYEPYALVRDKAI 115
>gi|448502804|ref|ZP_21612753.1| deoxyribodipyrimidine photolyase [Halorubrum coriense DSM 10284]
gi|445693867|gb|ELZ46008.1| deoxyribodipyrimidine photolyase [Halorubrum coriense DSM 10284]
Length = 511
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R DN L +A + ++ P+++ DP R R L LA
Sbjct: 5 WHRRDLRAADNVGLAAAAGTETDEADRGPAAPVFVFDPAV--LDHASDVRVRRLLDGLAA 62
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L +R GS L V +G PE V P + + + + + W D A++RD V
Sbjct: 63 LRDDYRERGSDLLVARGDPEAVLPRLAEALDAERVVWNRDYSGLARERDAGVRRALDAVD 122
Query: 131 VKVEQHVSHTLYNTN 145
V E H L++ +
Sbjct: 123 VAREAHHDAVLHDPD 137
>gi|392963663|ref|ZP_10329087.1| Deoxyribodipyrimidine photo-lyase [Fibrisoma limi BUZ 3]
gi|387847626|emb|CCH51126.1| Deoxyribodipyrimidine photo-lyase [Fibrisoma limi BUZ 3]
Length = 444
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 68/143 (47%), Gaps = 7/143 (4%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRKFMRVGPNRWR 62
T ++ W+R+ +RLHDN AL A+ + G+ +L P+++ D + R
Sbjct: 7 TEPISLVWLRRDLRLHDNAALYYAL----KSGRPVL--PIFVYDRLILDQLEDRDDRRVE 60
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
F+ + + L + +GS + G+P +V + + + + + YD E YAK+RD +V
Sbjct: 61 FIHREIQQLQAQLHQMGSTIIARYGRPIDVLKQVVEEFAVADVYTNYDYEVYAKERDAVV 120
Query: 123 EDMAKEYKVKVEQHVSHTLYNTN 145
+ M E + +++ +
Sbjct: 121 KAMLAERGIGFHTFKDQAIFDRD 143
>gi|425438643|ref|ZP_18818987.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9717]
gi|389719600|emb|CCH96584.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9717]
Length = 485
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 11/140 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-----RVGPNRWRFLQ 65
W R +R+HD+ A+ A+ + E + P Y D F + G R +FL
Sbjct: 6 WYRNDLRVHDHEAIYQAVQEQFE------IIPFYCFDERQFGFTSYGFPKTGKFRAKFLL 59
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+ADL Q +LG L + +GKPE++ P + + I + + ++ + V
Sbjct: 60 ESVADLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNKA 119
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
V+++ + TLY+ +
Sbjct: 120 LSGVPVQIKTFWTATLYHPD 139
>gi|448402770|ref|ZP_21572126.1| deoxyribodipyrimidine photolyase [Haloterrigena limicola JCM 13563]
gi|445664862|gb|ELZ17552.1| deoxyribodipyrimidine photolyase [Haloterrigena limicola JCM 13563]
Length = 465
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW R+ +R +DN L A G ++ PL++LDP ++ P R L ++L
Sbjct: 3 VHWHRRDLRPNDNRGLARA------AGDGPVV-PLFVLDPTVLEY--ASPIRVACLLEAL 53
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DL +R GS L VV+G+ V P++ ++ + W D A +RD V ++
Sbjct: 54 DDLRAWYRERGSELLVVRGEASAVVPEVAAEYDAARVVWNEDYSGLAAERDRAVRAALED 113
Query: 129 YKVKVE 134
V E
Sbjct: 114 ADVTCE 119
>gi|432928263|ref|XP_004081133.1| PREDICTED: cryptochrome DASH-like [Oryzias latipes]
Length = 521
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 12 IRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFR-----KFMRVGPNRWRFLQ 65
+R +RLHDN + + +I+ PLY DP H+ F + GP R RFL
Sbjct: 11 LRNDLRLHDNELFF----WAQKNADHIV--PLYCFDPRHYVGTYNFNFPKTGPFRLRFLL 64
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW-NIKLLTWEYDIEPYAKKRDGLVED 124
S+ DL + GS L V +GKPEEV D+ K ++ + + ++ + V++
Sbjct: 65 DSVRDLRNTLLSKGSNLVVRRGKPEEVVADLIKQLGSVSSVAFHEEVASEELNVEKKVKE 124
Query: 125 MAKEYKVKVEQHVSHTLYN 143
+ + +VKV TL++
Sbjct: 125 VCAQMEVKVHTCWGSTLFH 143
>gi|150261312|pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana
gi|150261313|pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana
gi|28971609|dbj|BAC65244.1| cryptochrome dash [Arabidopsis thaliana]
Length = 525
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP------HFRKFMRVGPNRW 61
+ W R +R+ DN AL YK + +L P+Y LDP HF F + G R
Sbjct: 42 TILWFRNDLRVLDNDAL-----YKAWSSSDTIL-PVYCLDPRLFHTTHFFNFPKTGALRG 95
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLL 105
FL + L DL + G L + GKPEE+ P + K + + +
Sbjct: 96 GFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTV 139
>gi|388457015|ref|ZP_10139310.1| deoxyribodipyrimidine photolyase [Fluoribacter dumoffii Tex-KL]
Length = 469
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R +RL+DNPA + A ++ + PLYI D K G + +L S
Sbjct: 4 ALVWFRYDLRLNDNPAFIEACSHHQ------FVIPLYIYD---GKNSVSGEAQDWWLHHS 54
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L L + LG L + +G P E+ D+ K ++ + W EP A RD ++
Sbjct: 55 LTSLSESLAQLGLNLILRKGDPFEIISDLVKKLSVSSVYWNRCYEPAAISRDKKIKAALL 114
Query: 128 EYKVKVEQ 135
E ++V+
Sbjct: 115 ERGIEVQS 122
>gi|448666718|ref|ZP_21685363.1| deoxyribodipyrimidine photolyase [Haloarcula amylolytica JCM 13557]
gi|445771849|gb|EMA22905.1| deoxyribodipyrimidine photolyase [Haloarcula amylolytica JCM 13557]
Length = 465
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-RVGPNRWRFLQQS 67
+HW R+ +R DN L +A + P+++ D R + GP R F+ +
Sbjct: 3 LHWHRRDLRATDNAGLAAATPSDP-------VVPVFVFD---RAVLDHAGPPRVAFMLDA 52
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L L + +R GS L V +G P V PD+ + + +TW D A++RD +V
Sbjct: 53 LDSLREWYRDRGSDLVVARGDPTAVIPDLAVEYGVDTVTWGKDYSGLARERDAVVRQALD 112
Query: 128 EYKVKVE 134
+ V E
Sbjct: 113 DADVARE 119
>gi|312194378|ref|YP_004014439.1| deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c]
gi|311225714|gb|ADP78569.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c]
Length = 447
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 14 KGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQ 73
+ +R+HDNP L +A G++ + PL++LD + R RFL +SLADLD+
Sbjct: 9 RDLRVHDNPMLTAAA----LAGEHTV--PLFVLDAAMARSGFATGARERFLAESLADLDR 62
Query: 74 KFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
R LG RL V G P E + + + D YA++R+ + E
Sbjct: 63 SLRELGGRLVVRAGDPVEQVCRVADEVDAGTVHLAADCSGYAQRREAALRSALAE 117
>gi|298208823|ref|YP_003717002.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus
HTCC2559]
gi|83848750|gb|EAP86619.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus
HTCC2559]
Length = 434
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
+ + ++ W R+ +RL DN L A+ KG +L PL+I D + R F
Sbjct: 2 SKKVSIFWFRRDLRLDDNVGFLEAL-----KGDYPVL-PLFIFDKDILDKLPENDARVTF 55
Query: 64 LQQSLADLDQKFRA-LGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
+ ++L ++ ++ + S L + PE+VF + K + I+ + D EPYAK+RD +
Sbjct: 56 IFETLQEMRKELQDDYDSSLAMFHDTPEKVFKSLVKDYQIQEVFTNRDYEPYAKERDTSI 115
Query: 123 EDMAKEYKVKVEQHVSHTLY 142
+++ + + + ++
Sbjct: 116 KELLSKNNISFNTYKDQVIF 135
>gi|254281574|ref|ZP_04956542.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
gi|219677777|gb|EED34126.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
Length = 439
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+HW ++ +RL DNPAL S + +L L + +GP R RFL++SL
Sbjct: 10 LHWFQRDLRLADNPALSSHV-----AADTLLCVYLMPKTGPWCNVTGMGPQRDRFLRESL 64
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI 102
L + LG L V++G PE V PD+ ++I
Sbjct: 65 QALRDELNRLGQDLLVLEGSPELVLPDLVSRFDI 98
>gi|448409751|ref|ZP_21574878.1| deoxyribodipyrimidine photolyase [Halosimplex carlsbadense 2-9-1]
gi|445672522|gb|ELZ25094.1| deoxyribodipyrimidine photolyase [Halosimplex carlsbadense 2-9-1]
Length = 473
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW R+ +R DN L +A + + + PL++ D GP R F+ +L
Sbjct: 3 VHWYRRDLRAADNRGLAAAAGRLEDVPADAPVVPLFVFDRDV--LAHAGPPRVAFMLDAL 60
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR 118
L + +R GS L V G P EV P + ++ +TW ++ ++R
Sbjct: 61 DSLREWYRERGSDLVVRHGDPREVVPAVAAEFDADAVTWGEEVSGLGRER 110
>gi|443477859|ref|ZP_21067672.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena biceps PCC 7429]
gi|443016926|gb|ELS31485.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena biceps PCC 7429]
Length = 497
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRFLQ 65
W R +RLHD L ++ + K N + P Y DP HF K F + G R +FL
Sbjct: 9 WFRNDLRLHDCEIL--SLAAEASKRMNAEVFPFYCFDPYHFGKTSFGFEKTGAFRAKFLI 66
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDI 111
+S+ DL R+L S L V GKPE + P++ + + + ++ +I
Sbjct: 67 ESVIDLRANLRSLNSDLIVRIGKPELILPELTQQLGLTSIYYQREI 112
>gi|425455819|ref|ZP_18835530.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9807]
gi|389803212|emb|CCI17833.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9807]
Length = 485
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 11/138 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRVGPNRWRFLQ 65
W R +R+HD+ A+ AI + + + P Y D F + G R +FL
Sbjct: 6 WYRNDLRVHDHEAIYRAIQ------EQLEIIPFYCFDERQFGLTSYGFPKTGKFRAKFLL 59
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+ADL Q +L S L + GKPEE+ P + + I + + ++ + V
Sbjct: 60 ESVADLRQSLESLDSNLIIRWGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKA 119
Query: 126 AKEYKVKVEQHVSHTLYN 143
V+++ + TLY+
Sbjct: 120 LSRVPVQIKTFWTATLYH 137
>gi|256393411|ref|YP_003114975.1| deoxyribodipyrimidine photo-lyase [Catenulispora acidiphila DSM
44928]
gi|256359637|gb|ACU73134.1| Deoxyribodipyrimidine photo-lyase [Catenulispora acidiphila DSM
44928]
Length = 473
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 5 PECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFL 64
P AV + +R+HDNP L +A + + + PL++LD R+ R RFL
Sbjct: 21 PRAAVALFTRDLRVHDNPVLAAAAASADGR-----VVPLFVLDGGI--LPRISETRRRFL 73
Query: 65 QQSLADLDQKFRALGSRLYVVQG 87
++SLADLD RALG RL + G
Sbjct: 74 EESLADLDAALRALGGRLVLRSG 96
>gi|414079662|ref|YP_007001086.1| deoxyribodipyrimidine photolyase [Anabaena sp. 90]
gi|413972941|gb|AFW97029.1| deoxyribodipyrimidine photolyase [Anabaena sp. 90]
Length = 478
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R+ D+ L +A + ++ + ++ LDP + + P R +++ L
Sbjct: 6 LFWHRRDLRISDHTGLAAA------RARSAKIVGVFCLDPQILEGDDIAPVRVKYMIGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L ++++ GS+L ++Q P P + K + W +D+EPY++ RD V + K
Sbjct: 60 QSLQERYQQAGSQLLILQNDPVIAIPKLAAALTAKAVFWNWDVEPYSQIRDLAVSEALK 118
>gi|338210188|ref|YP_004654235.1| DASH family cryptochrome [Runella slithyformis DSM 19594]
gi|336304001|gb|AEI47103.1| cryptochrome, DASH family [Runella slithyformis DSM 19594]
Length = 479
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 22/146 (15%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGP--------NR 60
++W R +RLHDN L AI +E + P+Y+ D R+F +G R
Sbjct: 6 IYWFRNDLRLHDNEGFLKAIQDADE------VIPIYVFDT--RQFEEIGSLGIPKTGTFR 57
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
+FL +S+ +L R G+ L + GKPE V ++ + W++ + Y + ++
Sbjct: 58 AKFLLESVQNLRDNLRKKGANLVIKLGKPEIVISELAREWDVTAI---YTAKEATQEETD 114
Query: 121 LVEDMAKE---YKVKVEQHVSHTLYN 143
+ ++K+ Y + E TLY+
Sbjct: 115 VETSLSKKLKVYNIDFEVFWGATLYH 140
>gi|395493322|ref|ZP_10424901.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. PAMC 26617]
Length = 456
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF-RKFMRVGPNRWRFLQQSLA 69
W+R+ +RL D PALL+AIN + + P+YILD K+ G +RW +L SL
Sbjct: 7 WLRRDLRLADQPALLAAIN-------DGPVIPVYILDDDTPEKYAMGGASRW-WLHHSLE 58
Query: 70 DLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
LD R GSRL + +GK EV + + + EP+ +K + V
Sbjct: 59 GLDSDLREKGSRLILRRGKCVEVLAQLAEETGATQVHCIRHFEPWWRKAEEAV 111
>gi|282899861|ref|ZP_06307822.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505]
gi|281195131|gb|EFA70067.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505]
Length = 484
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R DN L A EK + ++ ++ LDP+ + P R ++ L
Sbjct: 11 LFWHRRDLRTSDNTGLGVA----REKTKKVV--GVFCLDPNILGQDDIAPARITYMIGCL 64
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
L+ + GS+L ++ P P++ + K + W +D+EPYA+ RD
Sbjct: 65 KSLESLYSQAGSQLLILHDNPVRAIPNLAEALEAKAVFWNWDVEPYAQIRD 115
>gi|377567210|ref|ZP_09796444.1| deoxyribodipyrimidine photo-lyase [Gordonia sputi NBRC 100414]
gi|377525570|dbj|GAB41609.1| deoxyribodipyrimidine photo-lyase [Gordonia sputi NBRC 100414]
Length = 430
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W+R+ +RL D PAL AI N + +L+ ++LDP G R FL SL +
Sbjct: 3 WLRRDLRLGDLPALGEAIGDGN---REVLV--CFVLDPRLES--SSGERRLAFLYDSLRE 55
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
LD K L +L VV+G+P+E P + + D P+ ++RD V
Sbjct: 56 LDAK---LDGKLLVVRGRPDEEIPRLVDAVGAGSVHVSEDFSPFGRRRDDAV 104
>gi|336476980|ref|YP_004616121.1| deoxyribodipyrimidine photo-lyase [Methanosalsum zhilinae DSM 4017]
gi|335930361|gb|AEH60902.1| Deoxyribodipyrimidine photo-lyase [Methanosalsum zhilinae DSM 4017]
Length = 457
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Query: 12 IRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRKFMRVGPNRWRFLQQSLAD 70
R+ +R+ DN AL++A+ Q+ + P +I DP + + ++F+ +SL D
Sbjct: 12 FRRDLRIDDNTALINALE------QSDAVIPCFIFDPAQIKNNEYFSKSAFQFMIESLRD 65
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEY 129
L Q+F S LY+ G +V ++ + + + D P++KKRD ++ ++ EY
Sbjct: 66 LKQQFDKRNSHLYLFYGDSTDVIRNLKHEVDPEAVFLNKDYTPFSKKRDSAIKQISTEY 124
>gi|119502978|ref|ZP_01625063.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2080]
gi|119461324|gb|EAW42414.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2080]
Length = 433
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+HW R +RL DNPA+ S + ++ KP + + VG R RFL++SL
Sbjct: 4 LHWFRNDLRLRDNPAIASHTAADSLLCVYLMPKPRPWCN-----LVGVGAQRERFLRESL 58
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L + G L V++G PE V PD+ + I ++ + P +++R L + ++
Sbjct: 59 QELHLQLAEQGQALMVLEGSPELVLPDLVARFAITEVSTTF--TPGSQERKTLAY-LDQK 115
Query: 129 YKVKVEQHVSHTLY 142
V ++ H ++L+
Sbjct: 116 LPVPLQVHRGNSLF 129
>gi|347536503|ref|YP_004843928.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
branchiophilum FL-15]
gi|345529661|emb|CCB69691.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
branchiophilum FL-15]
Length = 428
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+ W R+ +R DN L A+ ++ Q++ P++I D + + + R F+ S
Sbjct: 2 TIFWFRRDLRWTDNVGLYHAL----QENQSVF--PIFIFDHNILQQLEKNDARVDFIHDS 55
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L ++ +F+ S + G P E++ ++ NI + D EP A++RD + + +
Sbjct: 56 LQKMNDEFQKYNSSIATFYGDPIEIWKELITNHNITSVYINKDYEPAARERDKKIYYLLQ 115
Query: 128 EYKVKVEQHVSHTLYNTN 145
E+++ ++ + ++ N
Sbjct: 116 EHQIPLKAYKDQVIFEKN 133
>gi|357409762|ref|YP_004921498.1| deoxyribodipyrimidine photo-lyase [Streptomyces flavogriseus ATCC
33331]
gi|320007131|gb|ADW01981.1| Deoxyribodipyrimidine photo-lyase [Streptomyces flavogriseus ATCC
33331]
Length = 459
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 16 MRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKF 75
+RLHD+P L +A+ +E + PL++LDP PNR FL L DLD
Sbjct: 12 LRLHDHPPLHAALASSDE------VVPLFVLDPGVEAAGFAAPNRRAFLADCLRDLDSGL 65
Query: 76 RALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
R G RL V +G+ E I ++ I YA++R+
Sbjct: 66 RDRGGRLVVREGEVAEEVRRIVSETEAGVVHMAAGISGYAQRRE 109
>gi|134100631|ref|YP_001106292.1| deoxyribodipyrimidine photolyase [Saccharopolyspora erythraea
NRRL 2338]
gi|291006735|ref|ZP_06564708.1| deoxyribodipyrimidine photo-lyase [Saccharopolyspora erythraea
NRRL 2338]
gi|133913254|emb|CAM03367.1| putative deoxyribodipyrimidine photolyase [Saccharopolyspora
erythraea NRRL 2338]
Length = 448
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ + +R+HDNP L +A + PL++LD ++ P R RFL +S
Sbjct: 4 AIALFTRDLRVHDNPMLAAAAEADR-------VVPLFVLDDDIQRSRFASPRRTRFLDES 56
Query: 68 LADLDQKFRALGSRLYVVQG 87
L DLD+ R LG RL + +G
Sbjct: 57 LTDLDENLRGLGGRLVLRRG 76
>gi|405958349|gb|EKC24485.1| Eukaryotic translation initiation factor 2-alpha kinase 4
[Crassostrea gigas]
Length = 1998
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 32/159 (20%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK-----FM 54
MG + + R +R+HDN L + N +L P+YI DP HF F
Sbjct: 1 MGTKGKTIICLFRNDLRIHDNEVL----QWANRNADFVL--PMYIFDPRHFGGTYHFGFP 54
Query: 55 RVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFP---DIFKTWNIKLLTW---- 107
+ GP+R +FL +S+ DL + + GS L V +GKP E D+ ++ + +
Sbjct: 55 KTGPHRTKFLLESIQDLRKNLKIRGSGLAVRKGKPHEELKKMIDMLGQSSVHSVVFHEEV 114
Query: 108 ---EYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
E D+E KK G V ++ HTLY+
Sbjct: 115 TQEELDVEKSIKKHCG----------VNIKTFWGHTLYH 143
>gi|298675064|ref|YP_003726814.1| deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum
Z-7303]
gi|298288052|gb|ADI74018.1| Deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum
Z-7303]
Length = 459
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF-RKFMRVGPNRWRFLQQ 66
++ R+ +R+ DN L +Y E + ++ P +I DP K PN ++FL +
Sbjct: 7 SIFIFRRDLRVDDNTGL----DYALENSEYVI--PCFIFDPRLIEKNDNFNPNSFQFLIE 60
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SL DL + G++LY+ G E V ++ I + D P++KKRD +
Sbjct: 61 SLEDLKHQLNDKGAKLYLFHGIAENVVTNLINKNLIDAVFVNRDYTPFSKKRDEAFKKAC 120
Query: 127 KEYKV 131
+ Y V
Sbjct: 121 EMYNV 125
>gi|289662993|ref|ZP_06484574.1| photolyase [Xanthomonas campestris pv. vasculorum NCPPB 702]
Length = 484
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A+ + G + + PLYI H G + +S
Sbjct: 16 AIVWFRRDLRLEDNPALRAAL----DAGHHPI--PLYIDALHEEGEWTPGAASRTWRHRS 69
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD RA GS L + G +V ++ + W EP + RD ++ +
Sbjct: 70 LAALDDALRARGSGLVIRAGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRALR 129
Query: 128 EYKVKVEQHVSHTLY 142
E ++ + S L+
Sbjct: 130 ERGIEAQSCNSALLF 144
>gi|448622754|ref|ZP_21669403.1| deoxyribodipyrimidine photolyase [Haloferax denitrificans ATCC
35960]
gi|445753262|gb|EMA04679.1| deoxyribodipyrimidine photolyase [Haloferax denitrificans ATCC
35960]
Length = 484
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-RVGPNRWRFLQQS 67
+HW R+ +R+ DN L +A E G + PL++ D R + G R R+L +
Sbjct: 3 LHWHRRDLRVADNRGLATAA----EAGP---VAPLFVFD---RDVLDHAGAPRVRYLLDA 52
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
LA+L + +R GS L V +G P V P + + + W D A++RD V
Sbjct: 53 LAELREAYRDRGSDLLVARGDPRTVVPAVAAALDAERAVWGIDYSGLARERDADV 107
>gi|120437052|ref|YP_862738.1| cryptochrome-like DNA photolyase [Gramella forsetii KT0803]
gi|117579202|emb|CAL67671.1| cryptochrome-like DNA photolyase family protein [Gramella forsetii
KT0803]
Length = 438
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 23/148 (15%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGP 58
T + W R +R+ D+ AL +A N +EK + +Y DP H+ K F++ G
Sbjct: 10 TTNTGLVWFRNDLRISDHEALTTACN-SHEK-----IIGIYCFDPRHYLKDQFGFIKTGK 63
Query: 59 NRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTW-------EYDI 111
R +FL +++ +L + L L V Q KPE++ P+I +++K + + E+D+
Sbjct: 64 FRSKFLIETIEELQKNLETLNIELLVFQEKPEDIIPEIISEYSVKSVYFQKEWTQEEHDV 123
Query: 112 EPYAKKRDGLVEDMAKEYKVKVEQHVSH 139
E ++ LV D+ E+ +Q + H
Sbjct: 124 EKEVRR---LVNDI--EFNSYYQQFLFH 146
>gi|400537115|ref|ZP_10800649.1| deoxyribodipyrimidine photo-lyase [Mycobacterium colombiense CECT
3035]
gi|400330128|gb|EJO87627.1| deoxyribodipyrimidine photo-lyase [Mycobacterium colombiense CECT
3035]
Length = 442
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL D+PALL+A +N + ++LDP K G R R+L S
Sbjct: 3 ALLWFRRDLRLRDHPALLAA-------AENDGVLACFVLDPRLEK--SSGQRRLRYLGDS 53
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
L L L RL V +G+P P I K + + D P+ K+RD
Sbjct: 54 LRRLRDD---LDGRLLVTRGQPHTQIPRIAKEIDASSVHVSEDFTPFGKRRD 102
>gi|333028704|ref|ZP_08456768.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp.
Tu6071]
gi|332748556|gb|EGJ78997.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp.
Tu6071]
Length = 481
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 16 MRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKF 75
+RLHD+P L +A+ E + PL++ DP +K NR FL L DLD
Sbjct: 38 LRLHDHPPLRAAVREAEE------VVPLFVRDPGIKKVGFHAANRAAFLADCLGDLDAGL 91
Query: 76 RALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR 118
R G RL V G+P +V ++ + + + + YA+ R
Sbjct: 92 RERGGRLVVRAGEPAQVVRELVGSTGAERVHVAAGVSAYARNR 134
>gi|448578594|ref|ZP_21644014.1| deoxyribodipyrimidine photolyase [Haloferax larsenii JCM 13917]
gi|445725772|gb|ELZ77392.1| deoxyribodipyrimidine photolyase [Haloferax larsenii JCM 13917]
Length = 478
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+HW R+ +R DN L +A ++ PL++ D + G R R++ +L
Sbjct: 3 LHWHRRDLRTADNRGLATA-------AAEDVVAPLFVFDDAVLE--HAGSPRVRYMLDAL 53
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
A+L +R+ GS L V +G P + P + + + W D AK+RD
Sbjct: 54 AELRASYRSRGSDLLVARGDPRSLVPAVADALDSDRVVWNVDYSGLAKERD 104
>gi|448546392|ref|ZP_21626556.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|448548379|ref|ZP_21627646.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
gi|448557573|ref|ZP_21632762.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445702845|gb|ELZ54785.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|445714130|gb|ELZ65897.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445714474|gb|ELZ66236.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
Length = 503
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 18/145 (12%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFR-----------KFMRV 56
++ W R+ +RLHDN A +A + P+Y +DP F +
Sbjct: 6 SLAWFRRDLRLHDNAAFAAACGADR-------VVPVYCVDPREYGDRPFGGPDSFDFEKT 58
Query: 57 GPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAK 116
G +R RF +SLADL R GS L V +G+PE V P++ + +T P
Sbjct: 59 GAHRARFRLESLADLRASLRDRGSDLVVREGRPESVLPELAAATDADFVTVHTRPTPEES 118
Query: 117 KRDGLVEDMAKEYKVKVEQHVSHTL 141
+ + VE + V++ + HTL
Sbjct: 119 RVESAVETELRGDGVELRRVWGHTL 143
>gi|443674351|ref|ZP_21139383.1| Deoxyribodipyrimidine photolyase [Rhodococcus sp. AW25M09]
gi|443412978|emb|CCQ17722.1| Deoxyribodipyrimidine photolyase [Rhodococcus sp. AW25M09]
Length = 442
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL D P L +A E G +L L++LD K GP R FL +SL
Sbjct: 5 WFRRDLRLGDLPTLTAAA----ESGDPVL--GLFVLDDRLLK-PSGGPRR-DFLFRSLEA 56
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
LD++ L RL VV+G PE V P + K + + D PY ++RD V
Sbjct: 57 LDEQ---LDGRLMVVRGDPETVVPKVAKAIGTEEVHISADYGPYGRERDARV 105
>gi|390338240|ref|XP_783613.3| PREDICTED: cryptochrome DASH-like [Strongylocentrotus purpuratus]
Length = 417
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 12/107 (11%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP------HFRKFM 54
M G + + +R +R DN L + ++ N++ PLY DP H F
Sbjct: 1 MAGRMKIVICLLRNDLRYRDNEVLF----WAHKNATNVI--PLYCFDPRHYKGTHQFGFP 54
Query: 55 RVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWN 101
+ GP+R +FL +S+ DL +++GS L V G PE+V P + + +
Sbjct: 55 KTGPHRLKFLLESVRDLRTTLQSVGSGLVVRSGNPEDVVPQLIQQFG 101
>gi|443244632|ref|YP_007377857.1| deoxyribodipyrimidine photo-lyase [Nonlabens dokdonensis DSW-6]
gi|442802031|gb|AGC77836.1| deoxyribodipyrimidine photo-lyase [Nonlabens dokdonensis DSW-6]
Length = 440
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 66/143 (46%), Gaps = 7/143 (4%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
+ + V W R+ +RL DN A+ ++ + P++I D + R F
Sbjct: 2 SKKVNVFWFRRDLRLDDNVGFYEALK------SDLPVLPIFIFDKEILDKLPEDDARVSF 55
Query: 64 LQQSLADLDQKFRA-LGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
+ + L + + + S L + GKP+E++ +I ++++ + D EPYAK+RD +
Sbjct: 56 IYEELQRMRSQLQQDQDSSLAMYYGKPQEIWKEIISSYDVDTVFTNRDYEPYAKERDEEI 115
Query: 123 EDMAKEYKVKVEQHVSHTLYNTN 145
+ + E+ + + +Y +
Sbjct: 116 DQLLAEHNIDFKTFKDQVIYEKD 138
>gi|402771126|ref|YP_006590663.1| DNA photolyase [Methylocystis sp. SC2]
gi|401773146|emb|CCJ06012.1| DNA photolyase, FAD-binding [Methylocystis sp. SC2]
Length = 480
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 56/132 (42%), Gaps = 8/132 (6%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R +R+ DNPALL+A L LYILD R G +L S
Sbjct: 5 AIVWFRNDLRISDNPALLAAAR------TGAPLVALYILDDESPGEWRTGAAARWWLHHS 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L L Q A G L + +G+ VF I + W EP+A +RD +E +
Sbjct: 59 LRALSQSLAARGVSLILRRGRAPYVFEQIIAETGAGAVFWNKLYEPWAIRRDAELEAQLR 118
Query: 128 EYKVKVEQHVSH 139
+ VE H H
Sbjct: 119 DD--AVETHCFH 128
>gi|389862600|ref|YP_006364840.1| deoxyribodipyrimidine photo-lyase [Modestobacter marinus]
gi|388484803|emb|CCH86343.1| Deoxyribodipyrimidine photo-lyase [Modestobacter marinus]
Length = 456
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL D+PALL+A++ +G + P+++ D R + G R FL
Sbjct: 4 ALLWFRRDLRLGDHPALLAAVDAAGPEGAVL---PVFVFDD--RLYGPSGDPRRVFLLDC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
LADL ++ G L + G P +V P + + D PY ++RD VE
Sbjct: 59 LADLREQ---TGGALVLRTGDPAQVLPQLVAELGAGSVHVSADAGPYGRRRDTAVE 111
>gi|357403751|ref|YP_004915675.1| deoxyribodipyrimidine photo-lyase [Methylomicrobium alcaliphilum
20Z]
gi|351716416|emb|CCE22076.1| deoxyribodipyrimidine photo-lyase [Methylomicrobium alcaliphilum
20Z]
Length = 453
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 64/128 (50%), Gaps = 13/128 (10%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWR----F 63
+++ +R+ MR+ DN AL A+ + + P Y +D H P + R F
Sbjct: 7 SLYIVRRDMRIDDNTALNEALRLSEQVQACFIFDP-YQIDEH--------PYQSRPALQF 57
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
+ QSL DL ++FR G+ L +V+G+PE++ D I+ + D P+++ RD ++
Sbjct: 58 MLQSLDDLREQFRERGACLTIVRGEPEKIVKDWVLACGIEAVFVNRDYTPFSRHRDYRLQ 117
Query: 124 DMAKEYKV 131
+ E +
Sbjct: 118 QVCIELDI 125
>gi|344942901|ref|ZP_08782188.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum
SV96]
gi|344260188|gb|EGW20460.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum
SV96]
Length = 453
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 22/141 (15%)
Query: 12 IRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWR------FLQ 65
R+ +RL DN ALL A+ GQ I P +I DP ++ P+ ++ F+
Sbjct: 11 FRRDLRLQDNTALLEALRLS---GQVI---PCFIFDPR-----QIEPHPYQSKPGLQFML 59
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
QS+ DL Q+ ++ G +L + PE+V + + I+ + D P++++RD + +
Sbjct: 60 QSIQDLQQQLQSAGGKLALYHALPEQVVRQLVEQQQIQAVFINRDYTPFSRRRDDELAAV 119
Query: 126 AKEYKVKVEQHVSHTLYNTNL 146
K+ + + HTL ++ L
Sbjct: 120 CKQLGIAL-----HTLPDSLL 135
>gi|448381750|ref|ZP_21561726.1| deoxyribodipyrimidine photolyase [Haloterrigena thermotolerans DSM
11522]
gi|445662831|gb|ELZ15594.1| deoxyribodipyrimidine photolyase [Haloterrigena thermotolerans DSM
11522]
Length = 468
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R+ +R DN L A N + PL++LDP P R L ++L
Sbjct: 3 VFWHRRDLRPDDNRGLARA------AAANESVVPLFVLDPTV--LDHASPVRVATLLEAL 54
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
DL ++R GS L VV+G+ V P++ ++ + W D A++RD V ++
Sbjct: 55 EDLRSQYRERGSDLLVVRGEASAVVPEVAAEYDATTVVWNEDYSGLARERDRAVRAALED 114
Query: 129 YKVKVE 134
+ E
Sbjct: 115 EGIAAE 120
>gi|408673564|ref|YP_006873312.1| cryptochrome, DASH family [Emticicia oligotrophica DSM 17448]
gi|387855188|gb|AFK03285.1| cryptochrome, DASH family [Emticicia oligotrophica DSM 17448]
Length = 475
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 16/95 (16%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-------RVGPNRW 61
+ W R +RLHDN AL+ A K N++ P+YI D R+F+ R G R
Sbjct: 5 LFWFRNDLRLHDNEALIQAT-----KAGNVI--PVYIFDE--RQFINTPLGFKRTGTFRA 55
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDI 96
+FL +++ +L + +GS L V GKPEE+ +
Sbjct: 56 KFLIEAVENLRDNLQKIGSNLIVKVGKPEEILAQL 90
>gi|326799093|ref|YP_004316912.1| deoxyribodipyrimidine photo-lyase [Sphingobacterium sp. 21]
gi|326549857|gb|ADZ78242.1| Deoxyribodipyrimidine photo-lyase [Sphingobacterium sp. 21]
Length = 437
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRKFMRVGPN 59
M + W R+ +RL DN AL A+ ++P++I D K
Sbjct: 1 MSRKERPCIFWFRRDLRLQDNHALYEALR------SGYKVQPVFIFDTAILSKLEDRDDA 54
Query: 60 RWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
R F+ + L ++++ S + +P + + +I K ++ + + +D EPYA+KRD
Sbjct: 55 RVSFIHRELRAINKQLEQQSSGIAFYHDEPNKAWEEIVKEFDPIAVYFNHDYEPYARKRD 114
Query: 120 GLVEDMAKEYKVKV 133
+ D ++Y + V
Sbjct: 115 KEISDFLRQYHIAV 128
>gi|54293218|ref|YP_125633.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
gi|53753050|emb|CAH14497.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
Length = 471
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 9/135 (6%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPA + A ++ ++ PLYI D K +G + +L S
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACSHHE------IVIPLYIYD---DKCSVLGQAQAWWLHHS 54
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L L + G L + +G P+E+ ++ + ++ + W EP A RD ++
Sbjct: 55 LIALGKSLNQQGLCLVLRKGAPQEIILELVAQYGVESVYWNRCYEPQAIARDKKIKLALG 114
Query: 128 EYKVKVEQHVSHTLY 142
E ++KV+ + L+
Sbjct: 115 EREIKVQSFNGNLLH 129
>gi|424841446|ref|ZP_18266071.1| cryptochrome, DASH family [Saprospira grandis DSM 2844]
gi|395319644|gb|EJF52565.1| cryptochrome, DASH family [Saprospira grandis DSM 2844]
Length = 460
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 1 MGGTPECA---VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF------R 51
M P+ A + W R +RLHDN L AI E + P+Y+ D
Sbjct: 1 MSALPKKAKRVIAWFRLDLRLHDNEMLTEAIKASEE------VYPVYVFDERTFGGKTES 54
Query: 52 KFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEE 91
F + GP R +F+ +++ADL Q+ + LG L + +GK EE
Sbjct: 55 GFAKTGPRRCQFIIEAVADLKQQLQTLGIDLIIRRGKAEE 94
>gi|363422380|ref|ZP_09310456.1| deoxyribodipyrimidine photo-lyase [Rhodococcus pyridinivorans AK37]
gi|359732979|gb|EHK81983.1| deoxyribodipyrimidine photo-lyase [Rhodococcus pyridinivorans AK37]
Length = 461
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRW 61
G ++ W R+ +RL+D P LLSA E ++L L++LD + G R
Sbjct: 9 GSMARPSIIWFRRDLRLNDLPTLLSA----TEAADDVL--ALFVLDDALLR--PSGARRR 60
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
FL L LD R LG RL VVQG P + P + ++ + D PY +RD
Sbjct: 61 DFLMGCLQALD---RDLGGRLLVVQGDPMMLVPQVAAEFDAAAVHISSDHGPYGTRRDRA 117
Query: 122 VED 124
V +
Sbjct: 118 VAE 120
>gi|336451491|ref|ZP_08621928.1| deoxyribodipyrimidine photolyase [Idiomarina sp. A28L]
gi|336281304|gb|EGN74584.1| deoxyribodipyrimidine photolyase [Idiomarina sp. A28L]
Length = 479
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W ++ +RL D+ L A + KG LL LYI++P + G + WRF+ QS+A
Sbjct: 6 WFKRDLRLRDHAPLAVACD----KGVPTLL--LYIVEPMLLEDTHFGEHHWRFVMQSIAQ 59
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIK-LLTWEYDIEPYAKKRDGLVEDMAKEY 129
++++ ++ V+ G E VF + +T+ I+ + ++E RD + AKE
Sbjct: 60 MNRQLEPFQQQVKVLHGNAEAVFAHLQQTYGIQNIFSYEETGLANTFARDKQIAAWAKEN 119
Query: 130 KVKVEQ 135
V +++
Sbjct: 120 GVNLQE 125
>gi|305666673|ref|YP_003862960.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170]
gi|88707478|gb|EAQ99722.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170]
Length = 436
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 7/141 (4%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
+ +V W R+ +RL DN LL A+ +G +L P++I D + R F+
Sbjct: 4 KISVFWFRRDLRLEDNTGLLKAL-----QGPTPVL-PIFIFDTEILCQVPKNDARVNFIY 57
Query: 66 QSLADLDQKFRAL-GSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
++ L+ + S + + GKP E+F + K I + +D EP+A KRD +++
Sbjct: 58 NTIETLNTNIKKKHKSSIAIFHGKPIEIFNTLIKKHTIDAVFANHDYEPHALKRDTAIKE 117
Query: 125 MAKEYKVKVEQHVSHTLYNTN 145
+ + + ++ N
Sbjct: 118 LLANNSISFHTYKDQVIFEKN 138
>gi|118594490|ref|ZP_01551837.1| deoxyribodipyrimidine photo-lyase [Methylophilales bacterium
HTCC2181]
gi|118440268|gb|EAV46895.1| deoxyribodipyrimidine photo-lyase [Methylophilales bacterium
HTCC2181]
Length = 465
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPN-RWRFLQQSLA 69
W R+ +RLHDN AL A++ + N+ ++I D + ++ + R F+ ++L+
Sbjct: 2 WFRRDLRLHDNHALHHALS----QSDNVYC--VFIFDKNILNDLKSKEDQRIEFIWEALS 55
Query: 70 DLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEY 129
++ +L S + V+ G P P + K ++ + L + D E YA KRD + + ++
Sbjct: 56 EMKASLNSLSSDITVIHGDPIHAIPLLLKKYDCEALFFNKDYESYANKRDMRIMEHIQQS 115
Query: 130 KVKVEQHVSHTLY 142
Q L+
Sbjct: 116 SADAYQFKDTVLF 128
>gi|91777293|ref|YP_552501.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans
LB400]
gi|91689953|gb|ABE33151.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans
LB400]
Length = 499
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPN- 59
+ T + + W+R+ +R DN AL A+ + E+ + + IL P + P+
Sbjct: 7 LNDTFDTGLVWLRRDLRNTDNAALYYALKH-CERVWCVFVFDTTILQPLVDAWHARHPDT 65
Query: 60 -----RWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPY 114
R F+ +L +LD+ RA G L V+ G P E+ P + + + +D EP
Sbjct: 66 QPQDRRIEFILAALGELDEALRADGGGLIVLYGNPAELVPKLADELGVDAVFANHDYEPV 125
Query: 115 AKKRDGLVEDMAKE 128
A +RDG V + E
Sbjct: 126 AIERDGTVRERLAE 139
>gi|408675634|ref|YP_006875382.1| DNA photolyase FAD-binding protein [Emticicia oligotrophica DSM
17448]
gi|387857258|gb|AFK05355.1| DNA photolyase FAD-binding protein [Emticicia oligotrophica DSM
17448]
Length = 437
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRKFMRVGPNRWRFL 64
+ A+ W R+ +RL+DN L A+ G +L P++I D + K R F+
Sbjct: 5 KIAIFWFRRDLRLNDNAGLYHAL----RSGYKVL--PIFIFDTNILNKLENKQDQRVEFI 58
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
+L++L + L S + + +G+P E++ I + + I + +D E YA +RD V +
Sbjct: 59 HHALSELQRSLSKLQSSILIKKGEPIEIWKLISEEYEIAEVYTNHDYEKYAIERDKQVGE 118
Query: 125 MAKEYKVKVEQHVSHTLYNTN 145
+ + T++ N
Sbjct: 119 LLNSKGIAFYTFKDQTIFEKN 139
>gi|160902458|ref|YP_001568039.1| deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95]
gi|160360102|gb|ABX31716.1| Deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95]
Length = 462
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRKFMRVGPNRWRFLQQ 66
+H R+ +RL DN +L+ A+ + + ++ P +I D + N +F+
Sbjct: 18 GLHIFRRDLRLEDNTSLIEAL----QSCERVI--PAFIFDDRQIKDNDYKSDNAVQFMIA 71
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
L +L+ + L +RLY +G +V + KT I+ + D P++KKRD ++ +
Sbjct: 72 CLKELNDQLHQLNARLYFFEGLTAKVVESLIKTLGIEAVFVNKDYTPFSKKRDNEIKAIC 131
Query: 127 KEYKVKVEQHVSHTLY 142
+ +V ++H L+
Sbjct: 132 ERERVDFKEHFDVLLH 147
>gi|443309426|ref|ZP_21039144.1| deoxyribodipyrimidine photolyase, partial [Synechocystis sp. PCC
7509]
gi|442780516|gb|ELR90691.1| deoxyribodipyrimidine photolyase, partial [Synechocystis sp. PCC
7509]
Length = 242
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN + + N + P +I+DP F + VG R RFL ++L D
Sbjct: 5 WFRRDLRLSDNEIVALST------ADNAEVLPCFIIDPWFYQQAEVGKARVRFLFEALED 58
Query: 71 LDQKFRALGSRLYVVQGKPEEV 92
LD+ ++ GS+LY+++G V
Sbjct: 59 LDRNLKSRGSQLYLLEGNSLSV 80
>gi|373954151|ref|ZP_09614111.1| cryptochrome, DASH family [Mucilaginibacter paludis DSM 18603]
gi|373890751|gb|EHQ26648.1| cryptochrome, DASH family [Mucilaginibacter paludis DSM 18603]
Length = 493
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPN-----RWRFLQ 65
W R +R+HDN L+ A+ K +L P++ D + K R G R RFL
Sbjct: 17 WFRNDLRIHDNEILVEAL----RKADKVL--PVFCFDNFYFKITRYGTRKTGDFRTRFLL 70
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+++ADL + + G+ L V G P ++ P + + +++ + ++ VE +
Sbjct: 71 EAVADLRKTLQQHGAELIVRSGDPVDIIPQLAEEYHVSEVYHHREVAFEETDISAKVEAV 130
Query: 126 AKEYKVKVEQHVSHTLYN 143
+ K+ ++ + HT Y+
Sbjct: 131 LWKKKLNLKHFIGHTFYH 148
>gi|145588429|ref|YP_001155026.1| deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145046835|gb|ABP33462.1| deoxyribodipyrimidine photo-lyase type I [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 492
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 11/139 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNIL-----LKPLYI--LDPHFRKFMRVGPNRWRF 63
W+R+ +RL+DN AL A+ + + LKPL LD K R R F
Sbjct: 7 WLRRDLRLYDNAALHYALKESKQVWVTFIFDEEILKPLLKGELDAQRLKHDR----RVDF 62
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
+ Q L +D++ R G L V GKP E P I K + + +D EP A RD V+
Sbjct: 63 IWQGLEQIDEELRKQGGGLIVRFGKPVECIPQIAKDLGVDTVFTNHDYEPSAIARDEAVK 122
Query: 124 DMAKEYKVKVEQHVSHTLY 142
+ + ++ E ++
Sbjct: 123 TLLAKSDIQFESFKDQVIF 141
>gi|323137318|ref|ZP_08072396.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
gi|322397305|gb|EFX99828.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
Length = 472
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 8/136 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGP-NRWRFLQQ 66
AV W R +RL DNPAL +A G I+ LY+LD R+G +RW +L
Sbjct: 5 AVVWFRNDLRLADNPALTAAA----RSGAPII--ALYVLDDESAGEWRMGSASRW-WLHH 57
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SL L LG L + +G+ E V +I + W EP+A +RD ++
Sbjct: 58 SLTALAHDLARLGVTLTLRRGRAEFVLENIVADAGAGAVYWNRLYEPWAMRRDSEIKSQL 117
Query: 127 KEYKVKVEQHVSHTLY 142
+ V VE L+
Sbjct: 118 RARGVMVESFNGSLLF 133
>gi|410909117|ref|XP_003968037.1| PREDICTED: cryptochrome DASH-like [Takifugu rubripes]
Length = 521
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM------ 54
M G P + +R +RL DN ++ +I+ PLY DP R +M
Sbjct: 1 MSG-PRTVICLLRNDLRLFDN----ELFHWAQRNADHIV--PLYCFDP--RHYMGTYHYN 51
Query: 55 --RVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW-NIKLLTWEYDI 111
+ GP R RFL +S+ DL GS L V +GKPEEV + K ++ + + ++
Sbjct: 52 LPKTGPFRLRFLLESIKDLRNTLLNKGSNLIVRRGKPEEVVASLIKQLGSVSTVAFHEEV 111
Query: 112 EPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
+ V+D+ + KV V TLY+
Sbjct: 112 TSEELDVEKRVKDVCAQMKVNVHTCWGSTLYH 143
>gi|291570180|dbj|BAI92452.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
Length = 474
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 6/135 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R+ DN L +A ++ + ++ LDP + P R ++ L
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQ------VVGVFCLDPEILSGDDIAPVRVAYMLGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
L + ++ GS+L ++Q P + + + W D+EP ++RD VE+ E
Sbjct: 60 QCLQEDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTE 119
Query: 129 YKVKVEQHVSHTLYN 143
+KVE L++
Sbjct: 120 VGIKVETFWDQVLHS 134
>gi|282897058|ref|ZP_06305060.1| DNA photolyase, FAD-binding [Raphidiopsis brookii D9]
gi|281197710|gb|EFA72604.1| DNA photolyase, FAD-binding [Raphidiopsis brookii D9]
Length = 479
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R DN L A EK + ++ ++ LDP+ + P R ++ L
Sbjct: 6 LFWHRRDLRTSDNTGLGVA----REKTKKVV--GVFCLDPNILGQDDIAPARITYMIGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
L+ + GS+L ++ P P++ + K + W +D+EPYA+ RD
Sbjct: 60 KSLESLYLQAGSQLLILHDNPVRAIPNLAEALEAKAVFWNWDVEPYAQIRD 110
>gi|224823842|ref|ZP_03696951.1| Deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania ferrooxidans
2002]
gi|224604297|gb|EEG10471.1| Deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania ferrooxidans
2002]
Length = 469
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL D+ AL +A+ + + +++ D K + R F+ S
Sbjct: 5 ALCWFRRDLRLDDHAALYAALRHSER------VVCVFVFDRDILKHLPAQDRRVDFIWHS 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L +L ++ ALGS L VV G+P + P + + + D EP A RD V +
Sbjct: 59 LVELKEQLCALGSDLVVVSGRPVDCIPALAQEHGASTVWASRDYEPAACLRDAAVAERLS 118
Query: 128 EYKVKVE 134
+ ++E
Sbjct: 119 RHGTRLE 125
>gi|92429532|gb|ABD93510.2| DNA photolyase protein [Capsicum annuum]
Length = 188
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
Query: 12 IRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMRVGPNRWRFLQQ 66
R +R+HDN L +A N +++ + P+Y DP F + GP R FL +
Sbjct: 1 FRNDLRVHDNECLXAAHN------ESMSVLPVYCFDPRDYGKSSSGFDKTGPYRATFLIE 54
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
S+ DL + +A GS L V GKPE V ++ K + + ++ K + ++ +
Sbjct: 55 SVKDLRKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSYDEVKGEDKIDAVM 114
Query: 127 KEYKVKVEQHVSHTLYNTN 145
K+ + V+ TLY+ +
Sbjct: 115 KDEGLDVKFFWGSTLYHLD 133
>gi|254522734|ref|ZP_05134789.1| deoxyribodipyrimidine photolyase [Stenotrophomonas sp. SKA14]
gi|219720325|gb|EED38850.1| deoxyribodipyrimidine photolyase [Stenotrophomonas sp. SKA14]
Length = 476
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A+ E G ++ P+YI PH G + +S
Sbjct: 9 ALVWFRRDLRLQDNPALQAAL----EAGHEVV--PVYIHAPHEEGEWVPGAASDAWRHRS 62
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD R+ GS L + G + + + + W EP + RD ++ +
Sbjct: 63 LAALDADLRSRGSSLVLRHGDSLATLQALVEQIGAEAVYWNRKYEPATQPRDAEIKRTLR 122
Query: 128 EYKVKVE 134
E+ + +
Sbjct: 123 EHGIDAQ 129
>gi|409989683|ref|ZP_11273203.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
Paraca]
gi|409939453|gb|EKN80597.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
Paraca]
Length = 474
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 6/135 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +R+ DN L +A ++ + ++ LDP + P R ++ L
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQ------VVGVFCLDPEILSGDDIAPVRVAYMLGCL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
L + ++ GS+L ++Q P + + + W D+EP ++RD VE+ E
Sbjct: 60 QCLQEDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAIYWNRDVEPLPRQRDRSVEESLTE 119
Query: 129 YKVKVEQHVSHTLYN 143
+KVE L++
Sbjct: 120 VGIKVETFWDQVLHS 134
>gi|344211748|ref|YP_004796068.1| deoxyribodipyrimidine photolyase [Haloarcula hispanica ATCC 33960]
gi|343783103|gb|AEM57080.1| deoxyribodipyrimidine photolyase [Haloarcula hispanica ATCC 33960]
Length = 465
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 11/127 (8%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-RVGPNRWRFLQQS 67
+HW R+ +R DN L +A + P+++ D R + GP R F+ +
Sbjct: 3 LHWHRRDLRATDNAGLAAATPSDP-------VVPVFVFD---RDVLDHAGPPRVAFMLDA 52
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L L + +R GS L V +G P V PD+ + + +TW D A++RD V
Sbjct: 53 LDSLREWYRDRGSDLVVAEGDPTAVLPDLAAEYGAEKVTWGKDYSGLARERDAAVRQALD 112
Query: 128 EYKVKVE 134
+ V E
Sbjct: 113 DADVARE 119
>gi|302517648|ref|ZP_07269990.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78]
gi|302426543|gb|EFK98358.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78]
Length = 455
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 16 MRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKF 75
+RLHD+P L +A+ E + PL++ DP +K NR FL L DLD
Sbjct: 12 LRLHDHPPLRAAVREAEE------VVPLFVRDPGIKKVGFHAANRAAFLADCLGDLDAGL 65
Query: 76 RALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR 118
R G RL V G P +V ++ + + + + YA+ R
Sbjct: 66 RERGGRLVVRAGDPAQVVRELVGSTGAERVHVAAGVSAYARNR 108
>gi|313126193|ref|YP_004036463.1| deoxyribodipyrimidine photo-lyase type i [Halogeometricum
borinquense DSM 11551]
gi|448286034|ref|ZP_21477270.1| deoxyribodipyrimidine photolyase [Halogeometricum borinquense DSM
11551]
gi|312292558|gb|ADQ67018.1| deoxyribodipyrimidine photo-lyase type I [Halogeometricum
borinquense DSM 11551]
gi|445575333|gb|ELY29809.1| deoxyribodipyrimidine photolyase [Halogeometricum borinquense DSM
11551]
Length = 469
Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+HW R+ +R+ DN L++A + + + P+++ D G R RF+ +L
Sbjct: 3 LHWHRRDLRVSDNHGLVTAADAGD-------VVPVFVFDDDV--LAHAGAARVRFMLDAL 53
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
A L + +R S L VV+G P E P + ++ + W D A+ RD V E
Sbjct: 54 ARLRETYRERDSDLVVVRGDPTEELPRLAAEYDADGVVWNKDYSRLARTRDEAVRRALDE 113
Query: 129 YKV 131
V
Sbjct: 114 AGV 116
>gi|163756034|ref|ZP_02163150.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1]
gi|161323908|gb|EDP95241.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1]
Length = 433
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R+ DN L A+N G+ ++ PL+I D + + R F+ + L
Sbjct: 9 WHRRDLRIEDNIGLYHALN----SGKKVI--PLFIFDSDILEKLPKDDARVTFIYEELEK 62
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
++ ++ + + V GKP EV +I I + +D EPYA RD V ++
Sbjct: 63 INTTLQSHDASILVKHGKPLEVLEEIIGKHEISAVYTNHDYEPYAIARDKEVGELLASKN 122
Query: 131 VKVEQHVSHTLYNTN 145
++ + + ++ N
Sbjct: 123 IEFKTYKDQVIFERN 137
>gi|407683883|ref|YP_006799057.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str.
'English Channel 673']
gi|407245494|gb|AFT74680.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str.
'English Channel 673']
Length = 435
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILD-----PHFRKFMRVGPNRWR 62
++W R +RLHDN A+ S E Q + LYILD P F +G +R
Sbjct: 17 GLYWFRHDLRLHDNAAISSLC----EAVQQVTF--LYILDDKAFTPTTYGFAPMGKHRHT 70
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99
FL Q+L DL ++ LG L +V+G P E + K+
Sbjct: 71 FLLQTLVDLKRQLAKLGHDLLIVKGDPAECLVQLMKS 107
>gi|406596893|ref|YP_006748023.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii ATCC
27126]
gi|406374214|gb|AFS37469.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii ATCC
27126]
Length = 474
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 16/142 (11%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILD---PHFRKFMRVGPNR 60
T ++ W R+ +R+ DNPAL +A + + P+YI D P+ R+ G ++
Sbjct: 2 TVPVSIMWFRQDLRVKDNPALNAACDMGK-------IVPIYIYDDTAPNGRE--PGGASK 52
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
W +L SL+ L+++ L L + +G P+ + P + K++N K + W EP+ RD
Sbjct: 53 W-WLHHSLSSLNKR---LNGHLQIFKGDPQTLIPKLMKSFNAKGIFWNRCYEPWQINRDK 108
Query: 121 LVEDMAKEYKVKVEQHVSHTLY 142
++ E++ + L+
Sbjct: 109 TIKKTLIEHEYEAHSCNGSLLW 130
>gi|448336574|ref|ZP_21525671.1| deoxyribodipyrimidine photolyase [Natrinema pallidum DSM 3751]
gi|445628896|gb|ELY82195.1| deoxyribodipyrimidine photolyase [Natrinema pallidum DSM 3751]
Length = 469
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW R+ +R DN L A + + PL++LDP + P R L ++L
Sbjct: 3 VHWHRRDLRPGDNRGLARAASADEP------VVPLFVLDPSVLE--HASPVRVACLLEAL 54
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
L +RA GS L VV+G+ V P + T + + W D A++RD V +
Sbjct: 55 ESLRSWYRAHGSDLLVVRGEASTVVPRVATTHDAATVVWNEDYSGLARERDQAVRTALAD 114
Query: 129 YKVKVE 134
+ E
Sbjct: 115 EGITAE 120
>gi|448601043|ref|ZP_21656326.1| deoxyribodipyrimidine photolyase [Haloferax alexandrinus JCM 10717]
gi|445734646|gb|ELZ86204.1| deoxyribodipyrimidine photolyase [Haloferax alexandrinus JCM 10717]
Length = 484
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 11/127 (8%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-RVGPNRWRFLQQS 67
+HW R+ +R+ DN L +A E G + PL++ D R + G R R+L +
Sbjct: 3 LHWHRRDLRVADNRGLATAA----EAGP---VAPLFVFD---RDVLDHAGAPRVRYLLDA 52
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L++L +R GS L V +G P V P + ++ + W D A++RD V
Sbjct: 53 LSELRDAYRERGSDLLVARGDPRTVVPAVAAAFDAERAVWGIDYSGLARERDADVRLALD 112
Query: 128 EYKVKVE 134
E V E
Sbjct: 113 EAGVARE 119
>gi|448546468|ref|ZP_21626632.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|448548505|ref|ZP_21627724.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
gi|448557855|ref|ZP_21632841.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445702921|gb|ELZ54861.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|445713992|gb|ELZ65763.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445714263|gb|ELZ66028.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
Length = 484
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 11/127 (8%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-RVGPNRWRFLQQS 67
+HW R+ +R+ DN L +A E G + PL++ D R + G R R+L +
Sbjct: 3 LHWHRRDLRVADNRGLATAA----EAGP---VAPLFVFD---RDVLDHAGAPRVRYLLDA 52
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L++L +R GS L V +G P V P + ++ + W D A++RD V
Sbjct: 53 LSELRDAYRERGSDLLVARGDPRTVVPAVAAAFDAERAVWGIDYSGLARERDADVRLALD 112
Query: 128 EYKVKVE 134
E V E
Sbjct: 113 EAGVARE 119
>gi|29654479|ref|NP_820171.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
gi|212212435|ref|YP_002303371.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
gi|29541746|gb|AAO90685.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
gi|212010845|gb|ACJ18226.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
Length = 472
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
+ W R+ +RL DNPAL+ A + L PLYILD + M RW +L
Sbjct: 2 TTIFWFRQDLRLSDNPALVEAAKSADH------LIPLYILDDQLK--MLGDAQRW-WLHH 52
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SL+ L G+ L + +G + V ++ K + ++ + W EP ++ D +E+
Sbjct: 53 SLSSLQTALSKKGTSLILKKGDTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENRL 112
Query: 127 KEYKVKV 133
V++
Sbjct: 113 PPLSVEI 119
>gi|318058735|ref|ZP_07977458.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actG]
Length = 455
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 16 MRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKF 75
+RLHD+P L +A+ E + PL++ DP +K NR FL L DLD
Sbjct: 12 LRLHDHPPLRAAVREAEE------VVPLFVRDPGIKKVGFHAANRAAFLADCLGDLDAGL 65
Query: 76 RALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR 118
R G RL V G P +V ++ + + + + YA+ R
Sbjct: 66 RERGGRLVVRAGDPAQVVRELVGSTGAERVHVAAGVSAYARNR 108
>gi|209364020|ref|YP_002268317.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
5J108-111]
gi|207081953|gb|ACI23155.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
5J108-111]
Length = 452
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
+ W R+ +RL DNPAL+ A + L PLYILD + M RW +L
Sbjct: 2 TTIFWFRQDLRLSDNPALVEAAKSADH------LIPLYILDDQLK--MLGDAQRW-WLHH 52
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SL+ L G+ L + +G + V ++ K + ++ + W EP ++ D +E+
Sbjct: 53 SLSSLQTALSKKGTSLILKKGDTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENRL 112
Query: 127 KEYKVKV 133
V++
Sbjct: 113 PPLSVEI 119
>gi|408823943|ref|ZP_11208833.1| deoxyribodipyrimidine photo-lyase [Pseudomonas geniculata N1]
Length = 471
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A+ + G +++ P+YI PH G + +S
Sbjct: 4 ALVWFRRDLRLQDNPALQAAL----DAGHDVV--PVYIHAPHEEGGWAPGAASDAWRHRS 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD R GS L + G + + + + W EP + RD ++ M +
Sbjct: 58 LAALDADLRTRGSSLVLRSGDSLPALQLLIEQTDAGAVYWNRKYEPATQPRDATIKRMLR 117
Query: 128 EYKVKVE 134
E + +
Sbjct: 118 EQGIDAQ 124
>gi|254468682|ref|ZP_05082088.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta
proteobacterium KB13]
gi|207087492|gb|EDZ64775.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta
proteobacterium KB13]
Length = 416
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R +R+HDN L+ I + + +YI++ H R ++ +FL +L
Sbjct: 5 IFWFRNNLRIHDNYPLVQCI------KDSTSISFVYIVNRHLRVLDGHENHKNKFLIDAL 58
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPY 114
L LG LY+++G+P ++F + K + I + E + PY
Sbjct: 59 NQLKINLSDLGHELYIIEGEPSDIFSSLAKQYQINKIYCEKIVSPY 104
>gi|386818429|ref|ZP_10105647.1| DNA photolyase FAD-binding [Thiothrix nivea DSM 5205]
gi|386423005|gb|EIJ36840.1| DNA photolyase FAD-binding [Thiothrix nivea DSM 5205]
Length = 476
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
A+ W+R+ +RL DNPAL A + N++L ++I DP R+G +L
Sbjct: 2 STAIVWLRQDLRLADNPALYHAC----KTCANVIL--IFIDDPLPGSVSRLGAASQVWLH 55
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
SL LD +A G+RL + QG V + + W +P + RD ++++
Sbjct: 56 HSLQALDASLQAAGNRLTLRQGSALPVLQALLAETGATHVYWNRVYDPASLARDKQIKEI 115
Query: 126 AKE 128
K+
Sbjct: 116 LKQ 118
>gi|409124205|ref|ZP_11223600.1| DASH family cryptochrome [Gillisia sp. CBA3202]
Length = 465
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYI--LDPHFRKFMRVGPNRWRFLQQSL 68
W + +RLHDN AL AI+ +E L+ + LD FRK NR++FL++S+
Sbjct: 7 WFKNDLRLHDNEALCEAISNCDELIFCYCLEEILFQNLDLGFRK---ADINRFKFLEESV 63
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+L K LG L + ++ P I NI + E + P G VE M
Sbjct: 64 TNLQTKLEKLGGHLLISTKSAKDFIPRIVAEHNITAIYGEMEYAPEELALTGNVEKM 120
>gi|119477185|ref|ZP_01617421.1| putative photolyase [marine gamma proteobacterium HTCC2143]
gi|119449548|gb|EAW30786.1| putative photolyase [marine gamma proteobacterium HTCC2143]
Length = 477
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRV-GPNRWRFLQQSLA 69
W R+ +RL DNPAL +A E+G+ I P+YILD ++ G +RW +L +LA
Sbjct: 2 WFRQDLRLADNPALCAAC----ERGEII---PVYILDDQGAGQWKMGGASRW-WLHFALA 53
Query: 70 DLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEY 129
DL+ + L + QG + D+ + W EP+ RD ++ KE
Sbjct: 54 DLNASLKQC---LQIYQGDALTILGDLADQTGAATVVWNRCYEPWRIGRDATIKTSLKES 110
Query: 130 KVKVEQHVSHTLY 142
+ V+ L+
Sbjct: 111 GLDVQSFNGSLLW 123
>gi|118363134|ref|XP_001014668.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
thermophila]
gi|89296559|gb|EAR94547.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
thermophila SB210]
Length = 486
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRKFMRVGPNRWRFL 64
+ ++ W R+ +RL+DN AL +A+ +NE + PL+I D K R F+
Sbjct: 56 KVSIFWFRRDLRLNDNTALYNALKSQNE------VVPLFIFDTEILDKLEDKKDARVEFI 109
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
+ + ++ + +GS L V G + F ++ ++I+ + D E AK+RD ++
Sbjct: 110 HLYIMKIQEQLKQVGSTLIVKHGTVDNAFKELVSEFDIQSVYVNRDYESSAKQRDERIKK 169
Query: 125 MAKE 128
K+
Sbjct: 170 YVKQ 173
>gi|448704049|ref|ZP_21700589.1| deoxyribodipyrimidine photolyase [Halobiforma nitratireducens JCM
10879]
gi|445796665|gb|EMA47166.1| deoxyribodipyrimidine photolyase [Halobiforma nitratireducens JCM
10879]
Length = 475
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFR-----KFMRVGPNR 60
+ AV W R +RL DNP L A+ E + I+ P+Y+ DP R ++GP+R
Sbjct: 2 DTAVVWFRDDLRLTDNPTLSRAL----EAAERIV--PVYVFDPRRRGETQYDTPKLGPHR 55
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWN 101
RF ++S+ DL + R L V G E+V P++ ++
Sbjct: 56 ARFRRESVLDLRTRLRERDGDLLVETGHVEDVIPELVDRYD 96
>gi|295706162|ref|YP_003599237.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
gi|294803821|gb|ADF40887.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
Length = 475
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
WIRK RL DNPAL A + ++ P+YI D + M W L +L D
Sbjct: 8 WIRKDFRLVDNPALFHA-------AKEGMVVPVYIHDDYEESSMGSASKWW--LHHALND 58
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
+ L V +G P++V + N + + W EP+ KRD ++ E +
Sbjct: 59 FKNSIEKIQGTLIVQKGNPKDVLQKLLHQTNAQDIYWNRRYEPHVLKRDKELQAFFSEQQ 118
Query: 131 VKV 133
+ +
Sbjct: 119 INI 121
>gi|374619112|ref|ZP_09691646.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[gamma proteobacterium HIMB55]
gi|374302339|gb|EHQ56523.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[gamma proteobacterium HIMB55]
Length = 434
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+HW R +RL+DNPAL S + +++L L + +G R RFL++SL
Sbjct: 4 LHWFRTDLRLNDNPALAS-----HAAAESLLCLYLMPKPKPWCNLTGIGDQRDRFLRESL 58
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLT 106
+L + + LG L V++G PE V P + + + I ++
Sbjct: 59 IELKRDLQDLGQDLLVLEGSPELVIPHLVERYGITEIS 96
>gi|406596892|ref|YP_006748022.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii ATCC 27126]
gi|406374213|gb|AFS37468.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii ATCC 27126]
Length = 435
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILD-----PHFRKFMRVGPNRWR 62
++W R +RLHDN +AI+ E Q + LYILD P F +G +R
Sbjct: 17 GLYWFRHDLRLHDN----AAISALCEAVQQVTF--LYILDDKAFTPTTYGFAPMGKHRHT 70
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99
FL Q+L DL ++ LG L +V+G P E + K+
Sbjct: 71 FLLQTLVDLKRQLAKLGHDLLIVKGDPAECLVQLMKS 107
>gi|194365340|ref|YP_002027950.1| deoxyribodipyrimidine photo-lyase [Stenotrophomonas maltophilia
R551-3]
gi|194348144|gb|ACF51267.1| Deoxyribodipyrimidine photo-lyase [Stenotrophomonas maltophilia
R551-3]
Length = 471
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A+ + G +++ P+YI PH G + +S
Sbjct: 4 ALVWFRRDLRLQDNPALQAAL----DAGHDVV--PVYIHAPHEEGEWVPGAASDAWRHRS 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD R+ GS L + G + K + + W EP + RD ++ +
Sbjct: 58 LAALDAYLRSRGSSLVLRSGDSLATLQALIKQTGAEAVFWNRKYEPATQPRDATIKRTLR 117
Query: 128 EYKVKVE 134
E + +
Sbjct: 118 EQGIDAQ 124
>gi|456734211|gb|EMF59033.1| Deoxyribodipyrimidine photolyase [Stenotrophomonas maltophilia
EPM1]
Length = 471
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A+ + G +++ P+YI PH G + +S
Sbjct: 4 ALVWFRRDLRLQDNPALQAAL----DAGHDVV--PVYIHAPHEEGEWAPGAASDAWRHRS 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD R GS L + G + + + W EP + RD ++ M +
Sbjct: 58 LAALDADLRTRGSSLVLRSGDSLPALQLLIAQTGAEAVYWNRKYEPATQPRDATIKRMLR 117
Query: 128 EYKVKVE 134
E + +
Sbjct: 118 EQGIDAQ 124
>gi|377574583|ref|ZP_09803608.1| deoxyribodipyrimidine photo-lyase [Mobilicoccus pelagius NBRC
104925]
gi|377536740|dbj|GAB48773.1| deoxyribodipyrimidine photo-lyase [Mobilicoccus pelagius NBRC
104925]
Length = 454
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++ W R+ +RLHD+PALL+A + G + PL +LDP + R+ P FL
Sbjct: 3 SILWFRRDLRLHDHPALLAA----HADGDVV---PLVVLDPALVE-DRI-PRVAAFLG-C 52
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
+A L G RL V G+PEEV P + + + + EPY ++RD V
Sbjct: 53 VAALADSIAERGGRLVVRYGRPEEVVPAVATEAGARRVHVTAESEPYGRRRDDAV 107
>gi|262201249|ref|YP_003272457.1| deoxyribodipyrimidine photo-lyase [Gordonia bronchialis DSM 43247]
gi|262084596|gb|ACY20564.1| Deoxyribodipyrimidine photo-lyase [Gordonia bronchialis DSM 43247]
Length = 434
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
++ W+R+ +RL D P L +A N + +++DP K G R FL
Sbjct: 5 ASILWLRRDLRLGDLPPLSAA-------AANGRVLVCFVVDPRLEK--SSGERRLAFLFD 55
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SL +LD K LG RL VV G+P+ P + + + D P+ ++RD V +
Sbjct: 56 SLRELDTK---LGGRLLVVSGRPDVEIPRLASAVDAGSVHVSEDFSPFGRRRDAAVAEAL 112
Query: 127 KE 128
E
Sbjct: 113 GE 114
>gi|347541255|ref|YP_004848681.1| deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania sp. NH8B]
gi|345644434|dbj|BAK78267.1| deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania sp. NH8B]
Length = 469
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL D+ AL +A+ + + +++ D + +R F+ S
Sbjct: 5 ALCWFRRDLRLDDHAALHAALRHSER------VICVFVFDRDILDHLPAQDHRVDFIWHS 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L +L + RALGS L V G+P + P + + + D EP A +RD V +
Sbjct: 59 LMELKEHLRALGSDLVVASGRPVDCIPALAQEHGASTVWASRDYEPAACQRDAAVAERLS 118
Query: 128 EYKVKVE 134
+ ++E
Sbjct: 119 RHGTRLE 125
>gi|322369279|ref|ZP_08043844.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus
DX253]
gi|320551011|gb|EFW92660.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus
DX253]
Length = 464
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
VHW R+ +R+ DN AL +G +L P+++ D P R F+ +L
Sbjct: 3 VHWHRRDLRVADNRAL--------SRGSPVL--PVFVFDGAV--LSHAAPPRVSFMLSAL 50
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
L + +R G L V++G P E P I + + W D AK+RD V D
Sbjct: 51 ESLRESYRERGGDLLVLRGDPREEIPRIAAAADADRVVWNRDYSGLAKERDADVRD 106
>gi|424668223|ref|ZP_18105248.1| hypothetical protein A1OC_01818 [Stenotrophomonas maltophilia
Ab55555]
gi|401068485|gb|EJP77009.1| hypothetical protein A1OC_01818 [Stenotrophomonas maltophilia
Ab55555]
Length = 471
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A+ + G +++ P+YI PH G + +S
Sbjct: 4 ALVWFRRDLRLQDNPALQAAL----DAGHDVV--PVYIHAPHEEGEWAPGAASDAWRHRS 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD R GS L + G + + + W EP + RD ++ M +
Sbjct: 58 LAALDADLRTRGSSLVLRSGDSLPALQLLIAQTGAEAVYWNRKYEPATQPRDATIKRMLR 117
Query: 128 EYKVKVE 134
E + +
Sbjct: 118 EQGIDAQ 124
>gi|190573805|ref|YP_001971650.1| DNA photolyase [Stenotrophomonas maltophilia K279a]
gi|190011727|emb|CAQ45346.1| putative DNA photolyase [Stenotrophomonas maltophilia K279a]
Length = 473
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A+ + G +++ P+YI PH G + +S
Sbjct: 6 ALVWFRRDLRLQDNPALQAAL----DAGHDVV--PVYIHAPHEEGEWAPGAASDAWRHRS 59
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD R GS L + G + + + W EP + RD ++ M +
Sbjct: 60 LAALDADLRTRGSSLVLRSGDSLPALQLLIAQTGAEAVYWNRKYEPATQPRDATIKRMLR 119
Query: 128 EYKVKVE 134
E + +
Sbjct: 120 EQGIDAQ 126
>gi|47223394|emb|CAG04255.1| unnamed protein product [Tetraodon nigroviridis]
Length = 726
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 42 PLYILDP-HFR-----KFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPD 95
PLY DP H+ + GP R RFL +S+ DL + GS L V +GKPEEV
Sbjct: 556 PLYCFDPRHYAGTYHYSLPKTGPFRLRFLLESIRDLRKTLLNQGSNLIVRRGKPEEVVAS 615
Query: 96 IFKTW-NIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
+ K ++ + ++ ++ + V+D+ + KVKV TLY+
Sbjct: 616 LIKQLGSVSTVAFQEEVTSEELNVEKRVKDVCAQLKVKVHTCWGSTLYH 664
>gi|152981216|ref|YP_001354641.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille]
gi|151281293|gb|ABR89703.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille]
Length = 495
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 6/135 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R D+ AL A+ +G+ + +I D + R F+ SL +
Sbjct: 10 WFRRDLRSFDHAALHHALR----QGRQVYCA--FIFDRAILDELPSTDRRVEFIHASLQE 63
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
LD RALG L V + E+ P + + + +D EP A RDG V
Sbjct: 64 LDTALRALGGGLIVRHARAEQAIPQLAAELGVDAVFCNHDYEPQAIARDGAVAAALATDG 123
Query: 131 VKVEQHVSHTLYNTN 145
K++ + H ++ +
Sbjct: 124 RKLQTYKDHVIFEKD 138
>gi|335425144|ref|ZP_08554132.1| Deoxyribodipyrimidine photo-lyase [Salinisphaera shabanensis E1L3A]
gi|334886580|gb|EGM24937.1| Deoxyribodipyrimidine photo-lyase [Salinisphaera shabanensis E1L3A]
Length = 483
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
E + W R+ +RL DNPAL +A++ + + P+YI PH G + +L
Sbjct: 3 ERVIIWFRRDLRLADNPALRAALDDDFDS-----IVPVYIHAPHELGDWAPGAAQRVWLH 57
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
SLA ALGSRL + +G +V + + W +P RD V+
Sbjct: 58 DSLAAFSDALEALGSRLVIRRGDTTDVLDTLIAESGATSVYWNRLYDPLTIARDKKVKQH 117
Query: 126 AKEYKVKVEQHVSHTLY 142
+ ++ +H L+
Sbjct: 118 LADNDIETASFKAHLLH 134
>gi|255574119|ref|XP_002527975.1| DNA photolyase, putative [Ricinus communis]
gi|223532601|gb|EEF34387.1| DNA photolyase, putative [Ricinus communis]
Length = 576
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 27/145 (18%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP------HFRKFMRVGPNRW 61
+ W R +R+ DN +LL A + L P+Y +DP H F + G R
Sbjct: 85 CIVWFRNDLRILDNESLLQAWLSSDS------LLPVYCVDPRLFHTTHHFAFPKTGALRA 138
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
+FL + LADL G L++ GKPE++ P + + ++ + YA+K
Sbjct: 139 QFLIECLADLKNNLMKRGLNLFIRHGKPEDILPSLARAFSAHTV--------YAQK---- 186
Query: 122 VEDMAKEYKVKVEQHVSHTLYNTNL 146
E ++E + VE+ VS L NL
Sbjct: 187 -ETCSEE--LIVERLVSKALQRVNL 208
>gi|384045337|ref|YP_005493354.1| Deoxyribodipyrimidine photolyase family protein [Bacillus
megaterium WSH-002]
gi|345443028|gb|AEN88045.1| Deoxyribodipyrimidine photolyase family protein [Bacillus
megaterium WSH-002]
Length = 475
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 9/123 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
WIRK RL DNPAL A + ++ P+YI D M W L +L D
Sbjct: 8 WIRKDFRLVDNPALFHA-------AKEGMVVPVYIHDDDEESSMGSASKWW--LHHALND 58
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
+ L + +G P++V + N + + W EP+A KRD ++ E +
Sbjct: 59 FKTSIEKIEGTLIIKKGNPKDVLQKLIHETNAQDIYWNRRYEPHALKRDKELQAFFSEQQ 118
Query: 131 VKV 133
+ +
Sbjct: 119 INI 121
>gi|294811681|ref|ZP_06770324.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC
27064]
gi|326440135|ref|ZP_08214869.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC
27064]
gi|294324280|gb|EFG05923.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC
27064]
Length = 453
Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 16 MRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKF 75
+R+HD PAL +A+ +E + PL++LD R+ PNR FL SL LD++
Sbjct: 12 LRVHDQPALAAAVREADE------VVPLFVLDRGVRRSGFDAPNRLAFLADSLTALDEEL 65
Query: 76 RALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
R G RL + G E + + + + YA++R+
Sbjct: 66 RERGGRLVLRTGDVAEQVGRVVTETGARTVHLAAGVSAYARRRE 109
>gi|270159915|ref|ZP_06188571.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
gi|289165333|ref|YP_003455471.1| deoxyribodipyrimidine photolyase phrB [Legionella longbeachae
NSW150]
gi|269988254|gb|EEZ94509.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
gi|288858506|emb|CBJ12387.1| putative deoxyribodipyrimidine photolyase phrB [Legionella
longbeachae NSW150]
Length = 472
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 9/129 (6%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
A+ W R +RL+DNPA + A ++ + PLYI D + + G W +L
Sbjct: 3 TALVWFRFDLRLNDNPAFIEACSHHQ------FVIPLYIYDE--KNSVLGGAQAW-WLYH 53
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SL L G L + +G P E+ D+ KT +I + W EP A RD ++
Sbjct: 54 SLTSLSNSLAQRGLNLILRKGDPLEIILDLAKTVSISSVYWNRCYEPVAISRDKGIKATL 113
Query: 127 KEYKVKVEQ 135
E + V
Sbjct: 114 LERGIDVHS 122
>gi|15824993|gb|AAL09564.1|AF363633_1 cryptochrome 2 [Coturnix japonica]
Length = 49
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 10 HWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWR 62
HW R+G+RLHDNPAL +A+ ++ +YILDP F VG NRWR
Sbjct: 3 HWFRRGLRLHDNPALQAALRGAAS------IRCIYILDPWFAASSAVGINRWR 49
>gi|381190059|ref|ZP_09897583.1| deoxyribodipyrimidine photolyase [Thermus sp. RL]
gi|380452089|gb|EIA39689.1| deoxyribodipyrimidine photolyase [Thermus sp. RL]
Length = 388
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R +RLHD+PALL A+ G L +LDP+ ++ P R + +++
Sbjct: 7 WHRGDLRLHDHPALLEALAQGPVVG-------LVVLDPNN---LKTTPRRRAWFLENVRA 56
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
L + +RA G L+V++G P E P+ K K + PY + RD V++
Sbjct: 57 LREAYRARGGALWVLEGLPWEKVPEAAKRLRAKAVYALRSYTPYGRHRDARVQE 110
>gi|407648061|ref|YP_006811820.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Nocardia brasiliensis ATCC
700358]
gi|407310945|gb|AFU04846.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Nocardia brasiliensis ATCC
700358]
Length = 441
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 14 KGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQ 73
+ +R+ DNP L +A + +G +++ PL+++D PNR RFL +L +LD
Sbjct: 10 RDLRVRDNPVLTAA----HREGASVV--PLFVIDEAIAGGRFAAPNRARFLAAALGELDA 63
Query: 74 KFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKV 133
+ RA+G +L V +G E + + + + D+ Y+++R+ + D + +
Sbjct: 64 ELRAIGGKLVVRRGDVVEQVAAVAEEVHADSVHIAADVSGYSRRREQALRDRLAQRSCLL 123
Query: 134 EQHVS 138
H +
Sbjct: 124 HSHAA 128
>gi|345867351|ref|ZP_08819365.1| DNA photolyase family protein [Bizionia argentinensis JUB59]
gi|344048281|gb|EGV43891.1| DNA photolyase family protein [Bizionia argentinensis JUB59]
Length = 434
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN A+ K + +L P++I D + R F+ +L
Sbjct: 7 IFWFRRDLRLDDNRGFYEAL-----KSEYPVL-PIFIFDSEILDSLPEDDARVTFIYDTL 60
Query: 69 ADLDQKFR-ALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
D+ + + GS + + G P++VF ++ T+ I + +D EPYA +RD ++ K
Sbjct: 61 QDMRKTLQDEYGSSIAMYNGTPKKVFKELAATYAIDTVFTNHDYEPYATQRDAEIQTFLK 120
>gi|407687838|ref|YP_006803011.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407291218|gb|AFT95530.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 476
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 16/129 (12%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILD---PHFRKFMRVGPNR 60
T ++ W R+ +R+ DNPAL +A + + P+YI D P+ R+ G ++
Sbjct: 2 TVPVSIMWFRQDLRVKDNPALNAACDMGK-------IVPIYIYDDTAPNGRE--PGGASK 52
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
W +L SL+ L+++ L L + +G P+ + P + K++N K + W EP+ RD
Sbjct: 53 W-WLHHSLSSLNKR---LNGHLQIFKGDPQTLIPKLMKSFNAKGIFWNRCYEPWQINRDK 108
Query: 121 LVEDMAKEY 129
++ E+
Sbjct: 109 TIKKTLIEH 117
>gi|168024934|ref|XP_001764990.1| PHR1 AtPHR1-like type 2 CPD DNA photolyase [Physcomitrella patens
subsp. patens]
gi|162683799|gb|EDQ70206.1| PHR1 AtPHR1-like type 2 CPD DNA photolyase [Physcomitrella patens
subsp. patens]
Length = 495
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V+W+ + R DN ALL A++ EKG P+ + F+ + F+ + L
Sbjct: 30 VYWMSRDHRSRDNWALLHAVHQAREKGV-----PVAVAFNLVESFLEARARHFGFMLRGL 84
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKK-RDGLVEDMAK 127
++Q +A+ ++ +G P E P+ K N LL +Y ++ R+G+ E++A
Sbjct: 85 RVVEQNLKAVNIPFFLFRGNPVETIPEFLKKCNASLLVMDYSSLRIGRQWRNGVCENVAS 144
Query: 128 EYKV-KVEQH 136
V +V+ H
Sbjct: 145 SVAVAEVDAH 154
>gi|374851431|dbj|BAL54391.1| deoxyribodipyrimidine photo-lyase [uncultured gamma
proteobacterium]
Length = 491
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGP-NRWRFLQQ 66
A+ W R+ +RL DNPAL++A+ + + P+Y+ P + G +RW +L Q
Sbjct: 7 ALVWFRRDLRLTDNPALIAALTSHAD------VVPVYLHAPEEEAPWQPGAASRW-WLHQ 59
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
SL+ L+Q R GSRL + G E + + + W ++P ++RD +
Sbjct: 60 SLSQLEQSLRERGSRLIIRLGPTLESLLALCQETGAAAVYWNRLVDPAVRRRDAQI 115
>gi|218245570|ref|YP_002370941.1| DASH family cryptochrome [Cyanothece sp. PCC 8801]
gi|218166048|gb|ACK64785.1| cryptochrome, DASH family [Cyanothece sp. PCC 8801]
Length = 488
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK-----FMRVGPNRWRFLQ 65
W R +RLHD+ + A+ +K Q I P Y D K F + G + +FL
Sbjct: 11 WYRNDLRLHDHQPMFQAVK---QKAQII---PFYCFDNRQFKTTSFGFPKTGNFKSQFLL 64
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
QS+ +L + + LGS L V +G PE++ P+I K I + + ++ K + +E
Sbjct: 65 QSIDNLRKNLQQLGSNLVVRRGYPEKIIPEICKELAIDAVYFHQEVTSEEIKVETALEKA 124
Query: 126 AKEYKVKVEQHVSHTLY 142
+ V++ TLY
Sbjct: 125 LTQMGVQLNPFWGTTLY 141
>gi|356507809|ref|XP_003522656.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Glycine max]
Length = 549
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-------HFRKFM 54
G A+ W R +R+ DN AL YK +L P+Y +DP HF F
Sbjct: 51 GSGKGTAIVWFRNDLRVLDNEAL-----YKAWLSSETVL-PVYCVDPRLFATTYHF-GFP 103
Query: 55 RVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW 100
+ G R +FL + LADL + G L V GKPEE+ P + K++
Sbjct: 104 KTGALRAQFLLECLADLRKNLMKRGLNLLVQHGKPEEILPSLAKSF 149
>gi|374987968|ref|YP_004963463.1| deoxyribodipyrimidine photo-lyase [Streptomyces bingchenggensis
BCW-1]
gi|297158620|gb|ADI08332.1| deoxyribodipyrimidine photo-lyase [Streptomyces bingchenggensis
BCW-1]
Length = 466
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 16 MRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKF 75
+R+HDNPAL A+ + ++++ PL+++D R V PNR FL LADLD
Sbjct: 14 LRVHDNPALDGAL----REAESVV--PLFVVDSGIRDADFVVPNRAVFLADCLADLDAAL 67
Query: 76 RALGSRLYVVQG 87
RA G RL V +G
Sbjct: 68 RARGGRLVVRRG 79
>gi|119503732|ref|ZP_01625814.1| deoxyribodipyrimidine photolyase, putative [marine gamma
proteobacterium HTCC2080]
gi|119460240|gb|EAW41333.1| deoxyribodipyrimidine photolyase, putative [marine gamma
proteobacterium HTCC2080]
Length = 490
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+V W ++ +RL D+ L +A+ GQ +LL +YI++P K W F+ QS
Sbjct: 4 SVVWFKRDLRLADHAPLSAAVAL----GQPMLL--VYIVEPELLKNPHYRRRHWHFIAQS 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI-KLLTWEYDIEPYAKKRDGLVEDMA 126
LADL+ + + G++++V++G P +F I ++ I L ++E RD V A
Sbjct: 58 LADLNHQLQPHGTKVWVLEGDPITLFTAINQSQRIHHLFSYEETGLEVTFARDREVITWA 117
Query: 127 KEYKV 131
K V
Sbjct: 118 KSQGV 122
>gi|451981013|ref|ZP_21929393.1| Deoxyribodipyrimidine photo-lyase [Nitrospina gracilis 3/211]
gi|451761776|emb|CCQ90640.1| Deoxyribodipyrimidine photo-lyase [Nitrospina gracilis 3/211]
Length = 483
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRKFMRVGPNRWRFLQQ 66
A+ W+R+ +RL D+ AL +A + + +++ +++ D + RK R F+
Sbjct: 7 ALCWVRRDLRLRDHTALTAA----TRQAREVIV--VFVFDTNILRKLEDKDDRRVNFIHH 60
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SL ++ + G+ L V G P P + + + + D +PYA+KRD +VE
Sbjct: 61 SLKEMQARLVKKGADLLVCHGDPVLDIPRLAQELKVDAVFTNRDYDPYARKRDRIVEQKL 120
Query: 127 KEYKVKVEQHVSHTLY 142
K + V ++ ++
Sbjct: 121 KIWDVTFHSYMDQVVF 136
>gi|409358086|ref|ZP_11236449.1| deoxyribodipyrimidine photo-lyase type I [Dietzia alimentaria 72]
Length = 449
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 16/117 (13%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF--RKFMRVGPNRWRFLQ 65
++ W R+ +RL DNPALL+A++ +E + P+++ DP R +R G L+
Sbjct: 4 SILWFRRDLRLADNPALLAALDSADE------VLPVFVRDPGLLARSGVRAGR-----LE 52
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
SLA L + + G RL + G PE V D+ + + PY ++RD V
Sbjct: 53 ASLAALSE---STGGRLVIRSGDPETVIADLAAESGAYEVHISREPSPYGRRRDARV 106
>gi|448677847|ref|ZP_21689037.1| deoxyribodipyrimidine photolyase [Haloarcula argentinensis DSM
12282]
gi|445773522|gb|EMA24555.1| deoxyribodipyrimidine photolyase [Haloarcula argentinensis DSM
12282]
Length = 465
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+HW R+ +R DN L +A + P+++ D GP R F+ +L
Sbjct: 3 LHWHRRDLRATDNAGLAAATPSDP-------VVPVFVFDKAV--LDHAGPPRVAFMLDAL 53
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV------ 122
L + +R GS L + +G P V P + + + +TW D A++RD V
Sbjct: 54 DSLREWYRDRGSDLVITEGDPTSVLPALAAEYGTEKVTWGKDYSGLARERDAAVRQALDD 113
Query: 123 EDMAKE 128
ED+A+E
Sbjct: 114 EDVARE 119
>gi|54296244|ref|YP_122613.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
gi|53750029|emb|CAH11419.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
Length = 471
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPA + A ++ ++ PLYI D K +G + +L S
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACSHHE------IVIPLYIYD---DKCSVLGQAQAWWLHHS 54
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L L + G L + +G P+E+ ++ + ++ + W EP RD ++
Sbjct: 55 LIALGKSLNQQGLSLVLRKGDPQEIILELVAQYGVESVYWNRCYEPQVIARDKKIKLALG 114
Query: 128 EYKVKVEQHVSHTLY 142
E ++KV+ + L+
Sbjct: 115 EREIKVQSFNGNLLH 129
>gi|254374529|ref|ZP_04990010.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548]
gi|385793100|ref|YP_005826076.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|151572248|gb|EDN37902.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548]
gi|332678425|gb|AEE87554.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida Fx1]
Length = 464
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
+ + A+HW R+ +RL DNPAL A ++ + I ++ILD K +G +
Sbjct: 2 SKKIAIHWFRQDLRLADNPALYQA----SQADETI---TIFILD----KNQDIGSASKLW 50
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L SL L+ +L ++L G P E+ I K NI W + Y+ RD ++
Sbjct: 51 LHHSLNSLNS---SLDNKLNFYSGNPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQIK 107
Query: 124 DMAKEYKVKV 133
+++K+ V
Sbjct: 108 QFLQQHKINV 117
>gi|118497711|ref|YP_898761.1| deoxyribodipyrimidine photolyase [Francisella novicida U112]
gi|194323683|ref|ZP_03057459.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTE]
gi|208779776|ref|ZP_03247120.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTG]
gi|118423617|gb|ABK90007.1| deoxyribodipyrimidine photolyase [Francisella novicida U112]
gi|194322047|gb|EDX19529.1| deoxyribodipyrimidine photolyase family protein [Francisella
tularensis subsp. novicida FTE]
gi|208744231|gb|EDZ90531.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTG]
Length = 464
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
+ + A+HW R+ +RL DNPAL A ++ + I ++ILD K +G +
Sbjct: 2 SKKIAIHWFRQDLRLADNPALYQA----SQADETI---TIFILD----KNQDIGSASKLW 50
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L SL L+ +L ++L G P E+ I K NI W + Y+ RD ++
Sbjct: 51 LHHSLNSLNS---SLDNKLNFYSGNPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQIK 107
Query: 124 DMAKEYKVKV 133
+++K+ V
Sbjct: 108 QFLQQHKINV 117
>gi|427722807|ref|YP_007070084.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Leptolyngbya sp. PCC 7376]
gi|427354527|gb|AFY37250.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Leptolyngbya sp. PCC 7376]
Length = 518
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 11/106 (10%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRFLQ 65
W R+ +RLHD+ L++A+ + E + PLY D F + F + G R +FL
Sbjct: 9 WYRRDLRLHDHKPLITALQQQAE------IIPLYCFDSREFTQTAFGFPKTGNFRGQFLL 62
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDI 111
+S+A+L + + GS L + GKPE + + + + I + W ++
Sbjct: 63 ESVANLRRSLQQKGSNLLIYSGKPEVIISQLCRQFQIDTVYWHREV 108
>gi|285017930|ref|YP_003375641.1| deoxyribodipyrimidine photo-lyase; photolyase [Xanthomonas
albilineans GPE PC73]
gi|283473148|emb|CBA15654.1| putative deoxyribodipyrimidine photo-lyase; photolyase protein
[Xanthomonas albilineans GPE PC73]
Length = 503
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RLHD PAL +A+ + P+Y+ P G +LQ+S
Sbjct: 34 AIVWFRRDLRLHDQPALHAALAAGHTP------VPVYLHSPEDEGDWAAGAASCAWLQRS 87
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD + RA GSRL + +G E + + W EP + RD ++ +
Sbjct: 88 LAALDAQLRACGSRLILRRGPAEHALRQVIAECGAVAVYWNRRYEPATQPRDARLKRELR 147
Query: 128 EYKVKVEQHVSHTLY 142
++V H L+
Sbjct: 148 ALGLEVHSHNGALLF 162
>gi|358460135|ref|ZP_09170324.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. CN3]
gi|357076642|gb|EHI86112.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. CN3]
Length = 463
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 14 KGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQ 73
+ +R+HDNP L +A + + + PL++ D + + NR RFL + LADLD+
Sbjct: 10 RDLRVHDNPMLTAATD------EAEFVVPLFVRDTGAPRDLFGSGNRERFLVECLADLDR 63
Query: 74 KFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKV 133
R LG RL V +G P E + + D YA++R + E ++
Sbjct: 64 SLRGLGGRLVVREGDPVEQVCRLADEVGAARVHIAADASAYAQRRQTTLRTALAERGREL 123
Query: 134 EQH 136
H
Sbjct: 124 RSH 126
>gi|118364198|ref|XP_001015321.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
thermophila]
gi|89297088|gb|EAR95076.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
thermophila SB210]
Length = 472
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPN-RWRFLQQS 67
+ W R+ +RL DN L A+ ++I + PL+I D + + R F+
Sbjct: 20 LFWFRRDLRLFDNVGLYHALK------ESIPVVPLFIFDKDILNELEDKKDCRVEFIHNY 73
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
L+ + R GS + V E F + + ++I + D EPYAKKRD ++++
Sbjct: 74 LSQMQDNLRKHGSTMVVKHSNAESAFKSLMEEFDISCVFTNRDYEPYAKKRDQQIKEI 131
>gi|424812696|ref|ZP_18237936.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756918|gb|EGQ40501.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalinarum sp.
J07AB56]
Length = 458
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
+ W R+ +R DN L+ A QN P+Y+ DP +G N+ F++Q
Sbjct: 2 TTLFWHRQDLRTRDNIGLIQA-------AQNEDAVPVYVRDPSVHG--NLGVNQKAFVEQ 52
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
L LD K+R LGS L V G E ++ +++ L + I+P K VE+
Sbjct: 53 GLQKLDDKYRELGSGLVVSDGDTAEQLQELADSFDADNLLYNKAIDPRRKSVAKNVEEAF 112
Query: 127 KEYKVKV 133
+ +++
Sbjct: 113 DDTEIET 119
>gi|254465900|ref|ZP_05079311.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I]
gi|206686808|gb|EDZ47290.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I]
Length = 474
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ WIR+ +RL DNPAL +A E G +L P+YILD + + P ++R L L
Sbjct: 8 IWWIRRDLRLCDNPALTAAA----ESGAPVL--PVYILDEQ-DEALGAAP-KFR-LGLGL 58
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
Q+ GS L + +GK V D+ + + W +P A +RD ++ KE
Sbjct: 59 DHFGQELAKAGSCLILRRGKALRVLQDLIEETGAGAVHWSRLYDPQAIRRDSEIKQTLKE 118
Query: 129 YKVKVEQHVSHTLY 142
V V+ H L+
Sbjct: 119 QGVAVKSHGGRLLF 132
>gi|195995781|ref|XP_002107759.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens]
gi|190588535|gb|EDV28557.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens]
Length = 503
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 8/137 (5%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
C + W+R+ +RL DNPAL A ++GQ I +YI D R G +L
Sbjct: 8 CTLVWLRQDLRLIDNPALFHAA----KRGQLIT---VYIFDEDCSGKRRTGQACLWWLYH 60
Query: 67 SLADLDQKFRALGSRLYVVQGKPE-EVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
SL L + L V GK + ++ ++N + W EP+ RD +E+
Sbjct: 61 SLKSLRNQLSQWNIPLIVKSGKDAFTILKELLDSYNADAIYWNRCYEPFEYNRDCSIEEK 120
Query: 126 AKEYKVKVEQHVSHTLY 142
K V VE + L+
Sbjct: 121 LKMENVTVETYQDRVLF 137
>gi|254784878|ref|YP_003072306.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
gi|237684101|gb|ACR11365.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
Length = 447
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF----RKFMR-VGPNRWR 62
V W +R+ DN AL NY + + ++ +YILDP R +R +GP R R
Sbjct: 11 GVFWFSNDLRITDNAAL----NYAAQSCETLIC--VYILDPRLYAPNRYGLRSMGPMRDR 64
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FLQ+SLA L A+G L V++ P + + ++ L+ Y K+ ++
Sbjct: 65 FLQESLAQLSVDLNAVGQTLLVLRESPLQAMAQLIGKYDPGLVVRSRQAGFYEYKQWAML 124
Query: 123 EDMAKEYK-VKVEQHVSHTLYN 143
+ + Y+ + + +HTL+N
Sbjct: 125 Q---RRYRLISFKDIATHTLFN 143
>gi|448529029|ref|ZP_21620344.1| deoxyribodipyrimidine photolyase [Halorubrum hochstenium ATCC
700873]
gi|445709735|gb|ELZ61559.1| deoxyribodipyrimidine photolyase [Halorubrum hochstenium ATCC
700873]
Length = 502
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 2/135 (1%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R+ DN L +A E +++ DP R R L LA
Sbjct: 5 WHRRDLRVADNVGLAAATGAGVEGADRGPAAAVFVFDPDV--LDHASDVRVRRLLDGLAA 62
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L +R GS L V +G PE V P + + + + + W D A++RD V
Sbjct: 63 LRDDYRERGSDLLVARGDPENVLPRLAEALDAERVVWNRDYSGLARERDAGVRRALDAVD 122
Query: 131 VKVEQHVSHTLYNTN 145
V+ E H L++ +
Sbjct: 123 VEREAHQDAVLHDPD 137
>gi|431931754|ref|YP_007244800.1| deoxyribodipyrimidine photolyase [Thioflavicoccus mobilis 8321]
gi|431830057|gb|AGA91170.1| deoxyribodipyrimidine photolyase [Thioflavicoccus mobilis 8321]
Length = 479
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGP-NRWRFL 64
+ + W+R+ +RL DNPAL A++ L PLYI P R G +RW +L
Sbjct: 3 DTVILWLRRDLRLADNPALSRALSGAGR------LVPLYIHCPAEEGRWRAGAASRW-WL 55
Query: 65 QQSLADLDQKFRALGSRLYVVQGK 88
SLA LD+ FR GSRL + +G+
Sbjct: 56 HHSLAALDRAFRERGSRLLIARGE 79
>gi|357387933|ref|YP_004902772.1| putative deoxyribodipyrimidine photo-lyase [Kitasatospora setae
KM-6054]
gi|311894408|dbj|BAJ26816.1| putative deoxyribodipyrimidine photo-lyase [Kitasatospora setae
KM-6054]
Length = 441
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ + +RLHDNPAL +A ++ + PL++ DP PNR FL
Sbjct: 4 AIVLFTQDLRLHDNPALHAAHTRADQ------VVPLFVTDPAVAAAGFAAPNRVAFLSGC 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEE 91
LA+LD R GSRL V +G E
Sbjct: 58 LAELDAALRRTGSRLTVREGDTAE 81
>gi|259416145|ref|ZP_05740065.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp.
TrichCH4B]
gi|259347584|gb|EEW59361.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp.
TrichCH4B]
Length = 474
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 9/135 (6%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ WIR+ +RL DNPAL +A+ E G I+ PLYI DP R L L
Sbjct: 8 IWWIRRDLRLRDNPALTAAL----ETGGPII--PLYIHDPQDEALGAAPKFR---LGLGL 58
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+ GSRL + +G EV ++ K + W +P A KRD +++ K
Sbjct: 59 ERFAKTLEGHGSRLTLRKGDALEVLREVIKESGAGHVVWSRLYDPEAIKRDTEIKEQLKA 118
Query: 129 YKVKVEQHVSHTLYN 143
+ V+ ++
Sbjct: 119 ADITVKSTGGRLMFE 133
>gi|344207024|ref|YP_004792165.1| FAD-binding DNA photolyase [Stenotrophomonas maltophilia JV3]
gi|343778386|gb|AEM50939.1| FAD-binding DNA photolyase [Stenotrophomonas maltophilia JV3]
Length = 471
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPAL +A+ + G +++ P+YI PH G + +S
Sbjct: 4 ALVWFRRDLRLQDNPALQAAL----DAGHDVV--PVYIHAPHEEGEWVPGAASDAWRHRS 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L LD RA GS L + G + + + + + W EP + RD ++ +
Sbjct: 58 LGALDADLRARGSSLVLRSGDSLSILQLLIEQTGAEAVYWNRKYEPATQPRDATIKRTLR 117
Query: 128 EYKVKVE 134
E + +
Sbjct: 118 EQGIDAQ 124
>gi|326332769|ref|ZP_08199030.1| deoxyribodipyrimidine photolyase [Nocardioidaceae bacterium
Broad-1]
gi|325949468|gb|EGD41547.1| deoxyribodipyrimidine photolyase [Nocardioidaceae bacterium
Broad-1]
Length = 446
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 14/116 (12%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++ W R+ +RL D+PAL +A +GQ + PL++LDP R RW L S
Sbjct: 4 SLMWFRRDLRLGDHPALQAAA----AEGQVV---PLFVLDPRLAGSGR----RWERLLAS 52
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
LA L ++ L + QG P EV D+ + + PY ++RD VE
Sbjct: 53 LAALREE---TDGALVIRQGDPAEVVADVAAEAGASQVHVSTETTPYGRRRDAAVE 105
>gi|344204249|ref|YP_004789392.1| deoxyribodipyrimidine photo-lyase [Muricauda ruestringensis DSM
13258]
gi|343956171|gb|AEM71970.1| Deoxyribodipyrimidine photo-lyase [Muricauda ruestringensis DSM
13258]
Length = 437
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN A+ ++ + PL+I D + + R F+ + +
Sbjct: 9 WFRRDLRLDDNVGFYQALQ------NDVPVLPLFIFDTEILENLPKADARVTFIHKQIQK 62
Query: 71 LDQKFRA-LGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
L+ + A GS + P+ VF + + + ++ + +D EPYAKKRD ++++
Sbjct: 63 LNNQLSANYGSGIAQFHDSPKAVFKKLIQDYTVEAVYTNHDYEPYAKKRDSQIKEI 118
>gi|294507180|ref|YP_003571238.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
gi|294343508|emb|CBH24286.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
Length = 483
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 11/97 (11%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRKFM----RVGPNRW 61
A+ WIR +R+ D+ L A ++ ++ + P+Y DP HF M ++ R
Sbjct: 4 TALVWIRNDLRVRDHAPLRYAADHYDQ------VIPVYCFDPRHFGTTMFDLPKMSSIRA 57
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFK 98
RFL++S+ DL + LG+ L V +G+PE++ P++ +
Sbjct: 58 RFLRESVQDLRDSVQDLGADLVVRRGRPEDILPELVR 94
>gi|448568084|ref|ZP_21637692.1| deoxyribodipyrimidine photolyase [Haloferax lucentense DSM 14919]
gi|445727546|gb|ELZ79157.1| deoxyribodipyrimidine photolyase [Haloferax lucentense DSM 14919]
Length = 484
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-RVGPNRWRFLQQS 67
+HW R+ +R+ DN L +A E G + PL++ D R + G R R+L +
Sbjct: 3 LHWHRRDLRVADNRGLATAA----EAGP---VAPLFVFD---RDVLDHAGAPRVRYLLDA 52
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L++L +R GS L V +G P V P + + + W D A++RD V
Sbjct: 53 LSELRDAYRERGSDLLVARGDPRTVVPAVAAALDAERAVWGIDYSGLARERDADVRLALD 112
Query: 128 EYKVKVE 134
E V E
Sbjct: 113 EAGVARE 119
>gi|171913802|ref|ZP_02929272.1| Deoxyribodipyrimidine photo-lyase [Verrucomicrobium spinosum DSM
4136]
Length = 475
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
++HW R+ +RL DN AL +A + + P Y+L + GPNR FL
Sbjct: 7 VSLHWFRRDLRLTDNTALHAAQTASTQ------VIPFYVLSSWKKAHAWTGPNRQHFLCG 60
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAK 116
+L L + A+GSRL + G+ + + L D +PY +
Sbjct: 61 NLESLAKNLEAIGSRLIIRSGETVSEIERLIRETGATALYTNRDPDPYGQ 110
>gi|448688386|ref|ZP_21694219.1| deoxyribodipyrimidine photolyase [Haloarcula japonica DSM 6131]
gi|445779447|gb|EMA30377.1| deoxyribodipyrimidine photolyase [Haloarcula japonica DSM 6131]
Length = 465
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 11/127 (8%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-RVGPNRWRFLQQS 67
+HW R+ +R DN L +A + P++I D R + GP R F+ +
Sbjct: 3 LHWHRRDLRATDNAGLAAATPSDP-------VVPVFIFD---RAVLDHAGPPRVAFMLDA 52
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L L + +R GS L + +G P V P++ + + +TW D A++RD V
Sbjct: 53 LDSLREWYRNRGSDLVIAEGDPTSVLPELATEYGAEKVTWGKDYSGLARERDAAVRQALD 112
Query: 128 EYKVKVE 134
+ V E
Sbjct: 113 DADVARE 119
>gi|321475718|gb|EFX86680.1| hypothetical protein DAPPUDRAFT_307800 [Daphnia pulex]
Length = 520
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP------HFRKFMRVGPNRW 61
A+ R +R HDN + A K + +L PLY DP H KF + G R
Sbjct: 12 AICLFRNDLRYHDNEVIALA-----HKSADFVL-PLYCFDPRHFEGTHHYKFPKTGIFRT 65
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99
+FL +S+ D Q GS L +V KPEE IFK+
Sbjct: 66 QFLLESVEDFRQTLVKRGSNLMIVHSKPEEALLKIFKS 103
>gi|407683884|ref|YP_006799058.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'English Channel 673']
gi|407245495|gb|AFT74681.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'English Channel 673']
Length = 474
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 16/129 (12%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILD---PHFRKFMRVGPNR 60
T ++ W R+ +R+ DNPAL +A + + P+YI D P+ R+ G ++
Sbjct: 2 TVPVSIMWFRQDLRVKDNPALNAACDMGK-------IVPIYIYDDTAPNGRE--PGGASK 52
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
W +L SL+ L+++ L L + +G P+ + P + K +N K + W EP+ RD
Sbjct: 53 W-WLHHSLSSLNKR---LNGHLQIFKGDPQTLVPKLMKAFNAKGIFWNRCYEPWQINRDK 108
Query: 121 LVEDMAKEY 129
++ E+
Sbjct: 109 TIKKTLIEH 117
>gi|292657024|ref|YP_003536921.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|448293624|ref|ZP_21483728.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|291372710|gb|ADE04937.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|445569955|gb|ELY24522.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
Length = 484
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-RVGPNRWRFLQQS 67
+HW R+ +R+ DN L +A E G + PL++ D R + G R R+L +
Sbjct: 3 LHWHRRDLRVADNRGLATAA----EAGP---VAPLFVFD---RDVLDHAGAPRVRYLLDA 52
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
LA+L ++ GS L V +G P V P + ++ + W D A++RD V
Sbjct: 53 LAELRGAYQERGSDLLVARGDPRTVVPAVAAAFDAERAVWGIDYSGLARERDADV 107
>gi|218296790|ref|ZP_03497496.1| Deoxyribodipyrimidine photo-lyase [Thermus aquaticus Y51MC23]
gi|218242879|gb|EED09413.1| Deoxyribodipyrimidine photo-lyase [Thermus aquaticus Y51MC23]
Length = 417
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R +RL D+PALL A++ G L +LDP+ +R P R + +++
Sbjct: 5 WHRGDLRLKDHPALLQALSQGPLVG-------LVVLDPNN---LRTSPRRRAWFLENVRA 54
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L +R G L+VV+G P EV P + + K + PY + RD E
Sbjct: 55 LRAAYRERGGALWVVEGPPWEVVPQVARRLKAKAVYALKSYTPYGRYRDARTE 107
>gi|55978285|ref|YP_145341.1| DNA photolyase [Thermus thermophilus HB8]
gi|47606704|sp|P61497.1|PHR_THET8 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|17942830|pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus
Thermophilus
gi|21465636|pdb|1IQU|A Chain A, Crystal Structure Of Photolyase-Thymine Complex
gi|146386554|pdb|2J07|A Chain A, Thermus Dna Photolyase With 8-Hdf Antenna Chromophore
gi|146386555|pdb|2J08|A Chain A, Thermus Dna Photolyase With 8-Iod-Riboflavin Antenna
Chromophore
gi|146386556|pdb|2J09|A Chain A, Thermus Dna Photolyase With Fmn Antenna Chromophore
gi|15080709|dbj|BAB61864.2| DNA photolyase [Thermus thermophilus HB8]
gi|55773458|dbj|BAD71898.1| DNA photolyase [Thermus thermophilus HB8]
Length = 420
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R +RLHD+PALL A+ G L +LDP+ ++ P R + +++
Sbjct: 7 WHRGDLRLHDHPALLEALARGPVVG-------LVVLDPNN---LKTTPRRRAWFLENVRA 56
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
L + +RA G L+V++G P E P+ + K + PY + RDG V +
Sbjct: 57 LREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVRE 110
>gi|448455076|ref|ZP_21594402.1| deoxyribodipyrimidine photolyase [Halorubrum lipolyticum DSM 21995]
gi|445814191|gb|EMA64159.1| deoxyribodipyrimidine photolyase [Halorubrum lipolyticum DSM 21995]
Length = 526
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNE-KGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLA 69
W R+ +R+ DN L +A +++ +G P+++ DP R R L LA
Sbjct: 5 WHRRDLRVADNVGLAAATGARDDDRGP---AAPVFVFDPDV--LDHASDVRVRRLLDGLA 59
Query: 70 DLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEY 129
L +R GS L V +G PE V P++ + + W D A++RD V +
Sbjct: 60 ALRADYRDRGSDLLVARGDPETVLPELAGALDADRVVWNRDYSGLARERDASVRTALNDA 119
Query: 130 KVKVEQHVSHTLYNTN 145
+ E H L+ +
Sbjct: 120 GIDREAHHDAVLHTPD 135
>gi|254445301|ref|ZP_05058777.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
gi|198259609|gb|EDY83917.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
Length = 522
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 8/129 (6%)
Query: 5 PECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFL 64
P ++ W ++ +R+HD+ L A + PLYI++P + P F+
Sbjct: 4 PAYSIVWFKRDLRVHDHRPLFEASRLGP-------VLPLYIVEPILLDSNDIAPCHGSFI 56
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWN-IKLLTWEYDIEPYAKKRDGLVE 123
SL DLD R LG+ L V +G EVF + K+ +L + E +RD V
Sbjct: 57 NDSLRDLDTSLRKLGTALVVHEGTATEVFQSLLKSIGPFRLFSHEETGNALTFRRDRDVA 116
Query: 124 DMAKEYKVK 132
K +++
Sbjct: 117 AWTKTQRIQ 125
>gi|325963959|ref|YP_004241865.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter
phenanthrenivorans Sphe3]
gi|323470046|gb|ADX73731.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter
phenanthrenivorans Sphe3]
Length = 478
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 8/143 (5%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGP-N 59
M + ++ W+R +RL DNPAL +A++ + L +YILD +G +
Sbjct: 1 MASSDLTSIVWLRDDLRLDDNPALAAAVDL------GLPLTVVYILDEDSEGVRPLGSAS 54
Query: 60 RWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
RW +L SLA L A GSRL + +G E + D+ N L W + D
Sbjct: 55 RW-WLHHSLASLASSLEASGSRLLLQRGPAEPILKDLAAATNAGHLFWNRRYGLPERTVD 113
Query: 120 GLVEDMAKEYKVKVEQHVSHTLY 142
V+ A E ++ + ++ L+
Sbjct: 114 AAVKAWAGENGIEALSYQANLLF 136
>gi|317123324|ref|YP_004097436.1| deoxyribodipyrimidine photo-lyase type I [Intrasporangium calvum
DSM 43043]
gi|315587412|gb|ADU46709.1| deoxyribodipyrimidine photo-lyase type I [Intrasporangium calvum
DSM 43043]
Length = 455
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+V W R+ +R+ D+PALL+A+ + G ++L P+++LDP + + G R R L S
Sbjct: 4 SVLWFRRDLRVSDHPALLAAL----DSGTSVL--PVFVLDP---RLLETGQPRSRRLITS 54
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L L +L L V G P +V P + + + + + P+ + RD VE
Sbjct: 55 LRALAD---SLDGHLVVRTGNPVDVIPQVAREVGAESVHVTRETTPFGRTRDAAVE 107
>gi|390949735|ref|YP_006413494.1| deoxyribodipyrimidine photolyase [Thiocystis violascens DSM 198]
gi|390426304|gb|AFL73369.1| deoxyribodipyrimidine photolyase [Thiocystis violascens DSM 198]
Length = 495
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 8/133 (6%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVG-PNRWRFLQQSLA 69
W R+ +RL DNPAL+ A+ G I+ P+YI P G +RW +L SL
Sbjct: 8 WFRRDLRLDDNPALIHALT----TGAPIV--PVYIHAPDEEAPWTPGAASRW-WLHGSLL 60
Query: 70 DLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEY 129
LD + GSRL++ +G I ++W +P ++RD ++ +
Sbjct: 61 ALDASLQRFGSRLWIARGDSLTELRRIVAATGATGVSWNRLYDPATRERDTHIKQALRSD 120
Query: 130 KVKVEQHVSHTLY 142
++ E H S L+
Sbjct: 121 GLRCESHRSTLLF 133
>gi|76802366|ref|YP_327374.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
gi|97047786|sp|Q3IPX9.1|CRYD_NATPD RecName: Full=Cryptochrome DASH
gi|76558231|emb|CAI49819.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
Length = 474
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 11/145 (7%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGP-----NR 60
+ AV W R +R+ DNP L A+ + ++ P+Y DP GP +R
Sbjct: 2 DTAVVWFRDDLRVTDNPTLADAV----AAAETVI--PVYTFDPDRYTESEYGPPKTGGHR 55
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
F +Q++ADL R G L V G+P V P++ + + + ++R
Sbjct: 56 AVFRRQAVADLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKPATEERRRAA 115
Query: 121 LVEDMAKEYKVKVEQHVSHTLYNTN 145
V + + + Q +HTLY+ +
Sbjct: 116 DVASALDDAGIALRQRWTHTLYHPD 140
>gi|163793481|ref|ZP_02187456.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
gi|159181283|gb|EDP65798.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
Length = 484
Score = 51.2 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRKFMRVGPNRWRFLQQSLA 69
W R+ +RL DNPAL +A+ +G+ ++ +YILD + G +RW +L SL
Sbjct: 17 WFRRDLRLADNPALTAAV----RRGRPVV--AVYILDDEDAGDWASGGASRW-WLHHSLE 69
Query: 70 DLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L + R GSRL + +G V + + + W EP+A RD ++
Sbjct: 70 RLAESLRGRGSRLILRRGAAAAVLDRLISETGAEAVYWNRCYEPWATARDQAIK 123
>gi|149372178|ref|ZP_01891448.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium
SCB49]
gi|149354945|gb|EDM43507.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium
SCB49]
Length = 435
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
T + V W R+ +RL DN A++ G+ +L P++I D + R F
Sbjct: 2 TDKVNVFWFRRDLRLDDNLGFFKALH-----GKYPVL-PIFIFDSEILNELPKDDARVTF 55
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
+ +L + + GS L + QGKP +++ + K ++++ + +D E YA+ RD
Sbjct: 56 IFNTLQKMRDALQEKGSSLAMYQGKPLDIYKQLIKDFDVQNVITNHDYEVYAQDRD 111
>gi|52840467|ref|YP_094266.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52627578|gb|AAU26319.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 471
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPA + A ++ ++ PLYI D K +G + +L S
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACSHHE------IVIPLYIYD---DKCSVLGQAQAWWLHYS 54
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L L + G L + +G P+E+ ++ + ++ + W EP RD ++
Sbjct: 55 LIALGKSLNQQGLSLVLRKGSPQEIILELVAQYGVESVYWNRCYEPQVIARDKKIKLALV 114
Query: 128 EYKVKVEQHVSHTLY 142
E ++KV+ + L+
Sbjct: 115 EREIKVQSFNGNLLH 129
>gi|378776172|ref|YP_005184602.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|364506979|gb|AEW50503.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 472
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPA + A ++ ++ PLYI D K +G + +L S
Sbjct: 5 ALVWFRQDLRLTDNPAFIEACSHHE------IVIPLYIYD---DKCSVLGQAQAWWLHYS 55
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L L + G L + +G P+E+ ++ + ++ + W EP RD ++
Sbjct: 56 LIALGKSLNQQGLSLVLRKGSPQEIILELVAQYGVESVYWNRCYEPQVIARDKKIKLALV 115
Query: 128 EYKVKVEQHVSHTLY 142
E ++KV+ + L+
Sbjct: 116 EREIKVQSFNGNLLH 130
>gi|377560115|ref|ZP_09789639.1| deoxyribodipyrimidine photo-lyase [Gordonia otitidis NBRC 100426]
gi|377522717|dbj|GAB34804.1| deoxyribodipyrimidine photo-lyase [Gordonia otitidis NBRC 100426]
Length = 427
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 10/111 (9%)
Query: 12 IRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADL 71
+R+ +RL+D PAL AI + + +L+ ++LDP K G R FL SL +L
Sbjct: 1 MRRDLRLNDLPALGEAIG---DGKRQVLV--CFVLDPRLEK--SSGERRLAFLYDSLREL 53
Query: 72 DQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
D K L L VV+G+P+E P + + + + D P+ ++RD V
Sbjct: 54 DAK---LDGNLLVVRGRPDEEIPRLVDAVSAESVHVSEDFSPFGRRRDDAV 101
>gi|440731048|ref|ZP_20911095.1| deoxyribodipyrimidine photo-lyase, photolyase [Xanthomonas
translucens DAR61454]
gi|440375449|gb|ELQ12158.1| deoxyribodipyrimidine photo-lyase, photolyase [Xanthomonas
translucens DAR61454]
Length = 473
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RLHD+PAL +A+ + P+Y+ P G +LQ++
Sbjct: 4 AIVWFRRDLRLHDHPALHAALAAGHTP------VPVYVHSPGDEGAWSAGAASLSWLQRA 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
LA LD + +A GSRL + QG E V ++ + + W EP + RD ++ +
Sbjct: 58 LAALDAQLQARGSRLILRQGPAETVLRELIQACGAVAVYWNRRYEPATQPRDAKLKRELR 117
Query: 128 EYKVKVEQHVSHTLY 142
E + V + S L+
Sbjct: 118 EQGLDVHSYNSALLF 132
>gi|158318950|ref|YP_001511458.1| deoxyribodipyrimidine photo-lyase [Frankia sp. EAN1pec]
gi|158114355|gb|ABW16552.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EAN1pec]
Length = 409
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 12/84 (14%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W+R+ +RL DNPALL+A E G+ + L++LD R+ GP R FL + L D
Sbjct: 3 WLRRDLRLDDNPALLAAA----ESGRVLA---LFVLDDALRR--PSGPVRLAFLHRCLRD 53
Query: 71 LDQKFRALGSRLYVVQGKPEEVFP 94
LD + LG RL V G P V P
Sbjct: 54 LDAQ---LGGRLCVRTGSPYAVAP 74
>gi|409195416|ref|ZP_11224079.1| DASH family cryptochrome [Marinilabilia salmonicolor JCM 21150]
Length = 433
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 17/100 (17%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILD--------PHFRK 52
M +P ++W R +R+HDNPAL A++ N + P++I D P
Sbjct: 8 MSNSP--IIYWFRNDLRIHDNPALTMALSEGNP------VIPIFIADNIWFETSHPEL-N 58
Query: 53 FMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEV 92
F R G R +FL +SLADLD+ + LY+ +G ++
Sbjct: 59 FPRTGLFRKQFLAESLADLDKTLKKFDRTLYIFKGDTAKI 98
>gi|296392873|ref|YP_003657757.1| deoxyribodipyrimidine photo-lyase [Segniliparus rotundus DSM 44985]
gi|296180020|gb|ADG96926.1| Deoxyribodipyrimidine photo-lyase [Segniliparus rotundus DSM 44985]
Length = 444
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL D P LL K G L++LDP + G R +L +LA
Sbjct: 8 WFRRDLRLADQPMLLEVA--KEAVG-------LFVLDPRLTR--GSGQARLDYLFSALAA 56
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYA 115
LD+ LG RL V +G P V PD+ + N+ + D PY
Sbjct: 57 LDE---TLGGRLVVAEGDPARVVPDVARELNVGAVRCTEDFAPYG 98
>gi|444377559|ref|ZP_21176769.1| Cryptochrome [Enterovibrio sp. AK16]
gi|443678340|gb|ELT85011.1| Cryptochrome [Enterovibrio sp. AK16]
Length = 427
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R +RL DNPAL++ ++ ++ P + HF+ +G R FL QSL
Sbjct: 6 WFRHDLRLADNPALVALSRRCDQALMVYVIDPEWFRPAHFQS-RHLGRFREEFLYQSLRA 64
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLT 106
L+++ + RL V G P +V PD+ K I LL
Sbjct: 65 LERELKKRKQRLVVKVGNPLQVIPDLCKKHGIDLLA 100
>gi|119486492|ref|ZP_01620550.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
gi|119456394|gb|EAW37525.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
Length = 515
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRFLQ 65
W R +R+HD+ L A+ + E + P+Y DP F K F + G R +FL
Sbjct: 31 WYRNDLRVHDHEPLHLAVKAQAE------IIPVYCFDPRQFGKTSFGFPKTGVFRAQFLL 84
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+ DL R LGS L V PE V P++ K I + + ++ + +E
Sbjct: 85 ESVTDLRNSLRKLGSDLIVRYDFPETVIPELVKQLGIDEVYYYREVTSEELAVETTLEKA 144
Query: 126 AKEYKVKVEQHVSHTLYNTN 145
V ++ + TLY+ +
Sbjct: 145 LNPLDVSLKSYWGATLYDLD 164
>gi|343403537|dbj|BAK61591.1| cryptochrome2a [Glycine soja]
gi|343403539|dbj|BAK61592.1| cryptochrome2a [Glycine soja]
gi|343403541|dbj|BAK61593.1| cryptochrome2a [Glycine soja]
gi|343403543|dbj|BAK61594.1| cryptochrome2a [Glycine soja]
gi|343403545|dbj|BAK61595.1| cryptochrome2a [Glycine soja]
gi|343403547|dbj|BAK61596.1| cryptochrome2a [Glycine soja]
gi|343403549|dbj|BAK61597.1| cryptochrome2a [Glycine soja]
Length = 631
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFR-KFMRVGPNRWRFLQQ 66
+ W R+ +R+ DNPAL +A K ++L P+Y+ P +F +RW +L+Q
Sbjct: 6 TIVWFRRDLRIEDNPALTAAA-----KEGSVL--PVYVWCPKEEGQFYPGRVSRW-WLKQ 57
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEV-FPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
SLA LDQ ++LGSRL +++ V + K + + + +P + RD +++
Sbjct: 58 SLAHLDQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEK 117
Query: 126 AKEYKVKVEQHVSHTLY 142
E + V+ + LY
Sbjct: 118 LVEQGISVQSYNGDLLY 134
>gi|372269296|ref|ZP_09505344.1| cryptochrome-like DNA photolyase [Alteromonas sp. S89]
Length = 434
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK-----FMRVGPNRWRFLQ 65
W +R HDN AL A N I L Y DP F F R G R +FL
Sbjct: 5 WFLHNLRSHDNQALTQACASANGDTPVIAL---YCFDPQFFSTDPFGFPRTGKFRAQFLL 61
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDI 96
QSL DL Q+ L L + QG P +V P++
Sbjct: 62 QSLEDLKQQLADLNIPLLIRQGAPAQVIPEL 92
>gi|294085609|ref|YP_003552369.1| deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292665184|gb|ADE40285.1| Deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 477
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 10/134 (7%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+HW R+ +RL DNP+L++A + ++L PL+ILD + G +L +L
Sbjct: 7 IHWFRQDLRLADNPSLVAA-----AQAGDVL--PLFILDDDNAGDHKTGAAGRSWLHHAL 59
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
L+ +L +L V++G P ++ P + + W EP+ RD +++
Sbjct: 60 NALNM---SLDGKLCVMRGDPVDIIPKLVAKVGASGVFWNRCYEPWRIARDKMLKTNLTN 116
Query: 129 YKVKVEQHVSHTLY 142
++VE L+
Sbjct: 117 NNIQVESFNGSLLW 130
>gi|397665892|ref|YP_006507429.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
gi|395129303|emb|CCD07533.1| Deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
Length = 471
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
A+ W R+ +RL DNPA + A + ++ PLYI D K +G + +L S
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACFHHE------IVIPLYIYD---DKCSVLGQAQAWWLHHS 54
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L L + G L + +G P+E+ ++ + ++ + W EP RD ++
Sbjct: 55 LIALGKSLNQQGLSLVLRKGSPQEIILELVAQYGVESVYWNRCYEPQVIARDKKIKLALG 114
Query: 128 EYKVKVEQHVSHTLY 142
E ++KV+ + L+
Sbjct: 115 EREIKVQSFNGNLLH 129
>gi|392397553|ref|YP_006434154.1| deoxyribodipyrimidine photolyase [Flexibacter litoralis DSM 6794]
gi|390528631|gb|AFM04361.1| deoxyribodipyrimidine photolyase [Flexibacter litoralis DSM 6794]
Length = 452
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR----- 60
+ A+ W R+ +RL DN L A+ G +L PL+I D + +
Sbjct: 12 QLAIFWFRRDLRLDDNAGLYHAL----RSGFEVL--PLFIYDTEILDDLEDKNDARLTMI 65
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
+R+L++ +L+ K + S L + GKP ++ ++ + ++IK + +D EPYAK RD
Sbjct: 66 YRYLKKIKDELEDK--KISSSLCIKIGKPIAIYKELIEKFDIKEVYTNHDYEPYAKVRDE 123
Query: 121 LVEDMAKEYKVKVEQHVSHTLYNTN 145
++D ++ + + ++ N
Sbjct: 124 EIKDFLEKKDIHFKTFKDQVIFEKN 148
>gi|357123300|ref|XP_003563349.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Brachypodium distachyon]
Length = 587
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-------HFRKFMRVGPNR 60
AV W R +R+ DN AL+ A + +L P+Y +DP H F + G R
Sbjct: 89 AVVWFRNDLRVLDNEALVRAW----AAAEAVL--PVYCVDPRIFAGVTHRFGFPKTGALR 142
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99
+FL + L DL Q + G L V GKPE++ P I K
Sbjct: 143 AQFLIECLEDLKQNLQKRGLNLLVRHGKPEDILPAIAKA 181
>gi|332662834|ref|YP_004445622.1| DASH family cryptochrome [Haliscomenobacter hydrossis DSM 1100]
gi|332331648|gb|AEE48749.1| cryptochrome, DASH family [Haliscomenobacter hydrossis DSM 1100]
Length = 454
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK------FMRVGPNRW 61
A+ W R+ +RLHDN AL A+ E + P++I D K F + G R
Sbjct: 7 AIVWFRQDLRLHDNEALQDALRNAYE------VIPVFIFDERTFKGKTSFGFPKTGKYRA 60
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVF 93
+F+ +S+ADL Q R L S L V GK E++
Sbjct: 61 QFIIESVADLRQSLRKLNSDLIVRVGKTEDIL 92
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.139 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,526,125,750
Number of Sequences: 23463169
Number of extensions: 99835226
Number of successful extensions: 232147
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 1344
Number of HSP's that attempted gapping in prelim test: 229206
Number of HSP's gapped (non-prelim): 2527
length of query: 146
length of database: 8,064,228,071
effective HSP length: 110
effective length of query: 36
effective length of database: 9,778,246,777
effective search space: 352016883972
effective search space used: 352016883972
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)