BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9352
(146 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9R194|CRY2_MOUSE Cryptochrome-2 OS=Mus musculus GN=Cry2 PE=1 SV=1
Length = 592
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 96/145 (66%), Gaps = 6/145 (4%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR 60
MG +VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NR
Sbjct: 16 MGADGASSVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINR 69
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
WRFL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD
Sbjct: 70 WRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDA 129
Query: 121 LVEDMAKEYKVKVEQHVSHTLYNTN 145
+ MAKE V+V SHTLY+ +
Sbjct: 130 AIMKMAKEAGVEVVTENSHTLYDLD 154
>sp|Q923I8|CRY2_RAT Cryptochrome-2 OS=Rattus norvegicus GN=Cry2 PE=2 SV=1
Length = 594
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 96/145 (66%), Gaps = 6/145 (4%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR 60
MG +VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NR
Sbjct: 16 MGADGASSVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINR 69
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
WRFL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD
Sbjct: 70 WRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDA 129
Query: 121 LVEDMAKEYKVKVEQHVSHTLYNTN 145
+ MAKE V+V SHTLY+ +
Sbjct: 130 AIMKMAKEAGVEVVTENSHTLYDLD 154
>sp|Q49AN0|CRY2_HUMAN Cryptochrome-2 OS=Homo sapiens GN=CRY2 PE=1 SV=2
Length = 593
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 95/144 (65%), Gaps = 6/144 (4%)
Query: 2 GGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRW 61
G +VHW RKG+RLHDNPALL+A+ +G + + +YILDP F VG NRW
Sbjct: 18 GTDSASSVHWFRKGLRLHDNPALLAAV-----RGARCV-RCVYILDPWFAASSSVGINRW 71
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
RFL QSL DLD R L SRL+VV+G+P +VFP +FK W + LT+EYD EP+ K+RD
Sbjct: 72 RFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAA 131
Query: 122 VEDMAKEYKVKVEQHVSHTLYNTN 145
+ MAKE V+V SHTLY+ +
Sbjct: 132 IMKMAKEAGVEVVTENSHTLYDLD 155
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2
Length = 620
Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 91/136 (66%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I +G + + + +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALRECI-----RGADTV-RCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1
Length = 620
Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADT------VRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>sp|P97784|CRY1_MOUSE Cryptochrome-1 OS=Mus musculus GN=Cry1 PE=1 SV=1
Length = 606
Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>sp|Q8QG60|CRY2_CHICK Cryptochrome-2 OS=Gallus gallus GN=CRY2 PE=2 SV=2
Length = 582
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 90/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+VHW R+G+RLHDNPAL +A+ L+ +YILDP F VG NRWRFL QS
Sbjct: 14 SVHWFRRGLRLHDNPALQAALRGAAS------LRCIYILDPWFAASSAVGINRWRFLLQS 67
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+VV+G+P +VFP +FK W + L +EYD EP+ K+RD + +AK
Sbjct: 68 LEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEYDSEPFGKERDAAIIKLAK 127
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V SHTLYN +
Sbjct: 128 EAGVEVVIENSHTLYNLD 145
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1
Length = 588
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>sp|Q8WP19|CRY1_MACFA Cryptochrome-1 OS=Macaca fascicularis GN=CRY1 PE=2 SV=1
Length = 586
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 89/136 (65%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>sp|Q16526|CRY1_HUMAN Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1
Length = 586
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 90/138 (65%), Gaps = 6/138 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYNTN 145
E V+V +SHTLY+ +
Sbjct: 119 EAGVEVIVRISHTLYDLD 136
>sp|Q8QG61|CRY1_CHICK Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1
Length = 621
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 91/136 (66%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I +G + + + +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALRECI-----RGADTV-RCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL+V++G+P +VFP +FK W+I L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWSIAKLSIEYDSEPFGKERDAAIKKLAS 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>sp|Q70AD6|CRY1_SPAJD Cryptochrome-1 OS=Spalax judaei GN=CRY1 PE=2 SV=1
Length = 587
Score = 139 bits (351), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 88/136 (64%), Gaps = 6/136 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AVHW RKG+RLHDNPAL I + ++ +YILDP F VG NRWRFL Q
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADT------IRCVYILDPWFAGSSNVGINRWRFLLQC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L DLD R L SRL V++G+P +VFP +FK WNI L+ EYD EP+ K+RD ++ +A
Sbjct: 59 LEDLDANLRKLNSRLLVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLAT 118
Query: 128 EYKVKVEQHVSHTLYN 143
E V+V +SHTLY+
Sbjct: 119 EAGVEVIVRISHTLYD 134
>sp|O48652|UVR3_ARATH (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2
Length = 556
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 84/150 (56%), Gaps = 15/150 (10%)
Query: 3 GTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKF--------- 53
T ++ W RKG+R+HDNPAL A KG + P++++DPH+ +
Sbjct: 21 ATGSGSLIWFRKGLRVHDNPALEYA-----SKGSEFMY-PVFVIDPHYMESDPSAFSPGS 74
Query: 54 MRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEP 113
R G NR RFL +SL DLD + LGSRL V +G+P EV + W +K L +EYD +P
Sbjct: 75 SRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDP 134
Query: 114 YAKKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
Y + D V+D A V+V VSHTL+N
Sbjct: 135 YYQALDVKVKDYASSTGVEVFSPVSHTLFN 164
>sp|Q7PYI7|CRY1_ANOGA Cryptochrome-1 OS=Anopheles gambiae GN=Cry1 PE=2 SV=4
Length = 545
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 83/137 (60%), Gaps = 2/137 (1%)
Query: 9 VHWIRKGMRLHDNPALLSAI--NYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
+ W R G+RLHDNP+LL A+ + N+ + + L P++I D VG NR +FL +
Sbjct: 6 ILWFRHGLRLHDNPSLLEALKSDCVNQSSEAVKLFPIFIFDGESAGTRIVGYNRMKFLLE 65
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SLADLD++FR LG +L V +G V +F+ NIK L +E D EP K+RD V +
Sbjct: 66 SLADLDRQFRDLGGQLLVFRGDSVTVLRRLFEELNIKKLCYEQDCEPIWKERDDAVAKLC 125
Query: 127 KEYKVKVEQHVSHTLYN 143
+ V+ ++VSHTL+N
Sbjct: 126 RTMDVRCVENVSHTLWN 142
>sp|Q17DK5|CRY1_AEDAE Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1
Length = 545
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 81/135 (60%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R G+RLHDNP+LL A+ +++ L P++I D VG NR +FL +SL
Sbjct: 6 ILWFRHGLRLHDNPSLLEALRNDGTGSESVRLYPIFIFDGESAGTKLVGFNRMKFLLESL 65
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
ADLD++ R +G +LYV +G V +F+ NI+ L +E D EP K RD ++++ +
Sbjct: 66 ADLDRQLREIGGQLYVFKGNAVNVMRRLFEELNIRKLCFEQDCEPIWKARDDAIQNLCRM 125
Query: 129 YKVKVEQHVSHTLYN 143
VK + VSHTL++
Sbjct: 126 MDVKCVEKVSHTLWD 140
>sp|O77059|CRY1_DROME Cryptochrome-1 OS=Drosophila melanogaster GN=cry PE=1 SV=1
Length = 542
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R G+RLHDNPALL+A+ +K Q I L P++I D VG NR RFL SL
Sbjct: 8 VIWFRHGLRLHDNPALLAALA---DKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSL 64
Query: 69 ADLDQKFRALG---SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
D+D + +A RL V +G+P +F + + + + E D EP +RD + +
Sbjct: 65 QDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSL 124
Query: 126 AKEYKVKVEQHVSHTLYNTNL 146
+E + + VSHTL++ L
Sbjct: 125 CRELNIDFVEKVSHTLWDPQL 145
>sp|Q293P8|CRY1_DROPS Cryptochrome-1 OS=Drosophila pseudoobscura pseudoobscura GN=cry
PE=3 SV=2
Length = 540
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 6/141 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V W R G+RLHDNPALL+A+ EK Q I L P++I D VG NR RFL SL
Sbjct: 8 VLWFRHGLRLHDNPALLAALE---EKDQGIPLIPVFIFDGESAGTKSVGYNRMRFLLDSL 64
Query: 69 ADLDQKFRALG---SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
DLD++ ++ RL+V +G+P +F + + + + E D EP +RD +
Sbjct: 65 QDLDEQLQSATEGRGRLFVFEGEPTLIFRRLHEQVRLHKICAELDCEPIWNERDESARLL 124
Query: 126 AKEYKVKVEQHVSHTLYNTNL 146
+E ++ + VSHTL++ L
Sbjct: 125 CRELGIEYVEKVSHTLWDPRL 145
>sp|P05327|PHR_SYNP6 Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4
Length = 484
Score = 77.0 bits (188), Expect = 4e-14, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN L +A + Q+ L L+ LDP + + P R +LQ L +
Sbjct: 8 WHRRDLRLSDNIGLAAA------RAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQE 61
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L Q+++ GSRL ++QG P+ + P + + + + W DIEPY + RDG V K
Sbjct: 62 LQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAG 121
Query: 131 VKVEQ 135
++ Q
Sbjct: 122 IRAVQ 126
>sp|Q0E2Y1|UVR3_ORYSJ (6-4)DNA photolyase OS=Oryza sativa subsp. japonica GN=UVR3 PE=3
SV=1
Length = 551
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 74/146 (50%), Gaps = 17/146 (11%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK---------FMRVGPNRW 61
W RKG+R+HDNPAL + G L P+++LDP + + R G R
Sbjct: 18 WFRKGLRVHDNPAL----DAARRGGAAARLYPVFVLDPRYLRPDQAAPSPGSARAGVARV 73
Query: 62 RFLQQSLADLDQKFRALGSRLYVV----QGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKK 117
RFL +SL+DLD + R LGSRL ++ G K WNI L +E D EPYA
Sbjct: 74 RFLLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALA 133
Query: 118 RDGLVEDMAKEYKVKVEQHVSHTLYN 143
RD V D A + V VSHTL++
Sbjct: 134 RDKKVMDFAAASGIDVFSPVSHTLFD 159
>sp|Q8LB72|PHR2_ARATH Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2
SV=2
Length = 447
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-----HFRKFMRVGPNRWRFLQ 65
W R +R+HDN L SA N++ ++L P+Y DP F + GP R +FL
Sbjct: 120 WFRNDLRVHDNECLNSA----NDECVSVL--PVYCFDPRDYGKSSSGFDKTGPFRAQFLI 173
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+S+++L + +A GS L V GKPE V ++ K + ++ K +G +E
Sbjct: 174 ESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETA 233
Query: 126 AKEYKVKVEQHVSHTLY 142
KE V+V+ TLY
Sbjct: 234 MKEEGVEVKYFWGSTLY 250
>sp|Q7NMD1|CRYD_GLOVI Cryptochrome DASH OS=Gloeobacter violaceus (strain PCC 7421) GN=cry
PE=3 SV=1
Length = 500
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 11/106 (10%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWRFLQ 65
W R +R+HD+ L SA++ +N + LY DP F K F + GP R RFL
Sbjct: 9 WYRNDLRVHDHEPLTSALH------KNARVVALYCFDPRQFGKAPFGFEKTGPFRARFLL 62
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDI 111
+S+ADL + R LGS L V +G PEEV P + I + + ++
Sbjct: 63 ESVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEV 108
>sp|Q05380|YAT1_SYNP1 Uncharacterized 31.6 kDa protein in atpI 5'region OS=Synechococcus
sp. (strain PCC 6716) PE=4 SV=1
Length = 284
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL DN L +A + + ++ DP + V R +L L
Sbjct: 9 WHRRDLRLADNLGLYAA------RQHTPTVVGVFCFDPALLQGQDVAAVRVAYLLGCLQA 62
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L + ++ G L +VQG P +V P++ T + W D+EPYA++RD +V +
Sbjct: 63 LKEAYQQRGGCLLMVQGDPRQVIPEVATTLKATAVHWHEDVEPYARERDRVVAATLNDLG 122
Query: 131 VKVEQHVSHTLY 142
+ V + L+
Sbjct: 123 IAVHRQWDQLLH 134
>sp|P77967|CRYD_SYNY3 Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=cry PE=1 SV=2
Length = 489
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FRKFMR 55
M P + W R +RLHD+ L A+ + + +Y DP + F +
Sbjct: 1 MKHVPPTVLVWFRNDLRLHDHEPLHRALK------SGLAITAVYCYDPRQFAQTHQGFAK 54
Query: 56 VGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDI 111
GP R FLQQS+ +L + + +G++L V G PE+V P I K N K + + ++
Sbjct: 55 TGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREV 110
>sp|Q4KML2|CRYD_DANRE Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2
Length = 520
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 13/139 (9%)
Query: 12 IRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFR-----KFMRVGPNRWRFLQ 65
+R +RLHDN ++ ++I+ PLY DP H++ F + GP R RFL
Sbjct: 11 LRNDLRLHDN----EVFHWAQRNAEHII--PLYCFDPRHYQGTYHYNFPKTGPFRLRFLL 64
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW-NIKLLTWEYDIEPYAKKRDGLVED 124
S+ DL + GS L V QGKPE+V ++ K ++ + + ++ K + +++
Sbjct: 65 DSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKSVEEKLKE 124
Query: 125 MAKEYKVKVEQHVSHTLYN 143
+ + KV+V+ TLY+
Sbjct: 125 ICCQNKVRVQTFWGSTLYH 143
>sp|Q75WS4|CRYD_XENLA Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1
Length = 523
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 12 IRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP------HFRKFMRVGPNRWRFLQ 65
+R +RLHDN L ++ + I+ PLY DP H+ F + GP+R +FL
Sbjct: 12 LRNDLRLHDNEVL----HWAHRNADQIV--PLYCFDPRHYVGTHYFNFPKTGPHRLKFLL 65
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW-NIKLLTWEYDIEPYAKKRDGLVED 124
+S+ DL + GS L + +GKPEEV D+ K N+ +T + + V+
Sbjct: 66 ESVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDVESAVKQ 125
Query: 125 MAKEYKVKVEQHVSHTLYN 143
+K + TLY+
Sbjct: 126 ACTRLGIKYQTFWGSTLYH 144
>sp|Q55081|PHR_SYNY3 Deoxyribodipyrimidine photo-lyase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=phrA PE=1 SV=1
Length = 488
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +RL+D+ AL A +K I+ ++ LD + + P R +L L
Sbjct: 22 WHRRDLRLNDHLALAKA----RQKTAKIV--GVFCLDNKILQAEDMAPARVAYLLGCLQS 75
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130
L ++ LGS L V Q P ++ P + T +TW D EPYA+KRD V +E
Sbjct: 76 LQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRERG 135
Query: 131 VKV 133
+ +
Sbjct: 136 LAI 138
>sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=CRYD PE=1 SV=2
Length = 569
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP------HFRKFMRVGPNRW 61
+ W R +R+ DN AL YK + +L P+Y LDP HF F + G R
Sbjct: 86 TILWFRNDLRVLDNDAL-----YKAWSSSDTIL-PVYCLDPRLFHTTHFFNFPKTGALRG 139
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLL 105
FL + L DL + G L + GKPEE+ P + K + + +
Sbjct: 140 GFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTV 183
>sp|P61497|PHR_THET8 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB8 / ATCC 27634 / DSM 579) GN=phr PE=1 SV=1
Length = 420
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R +RLHD+PALL A+ G L +LDP+ ++ P R + +++
Sbjct: 7 WHRGDLRLHDHPALLEALARGPVVG-------LVVLDPNN---LKTTPRRRAWFLENVRA 56
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
L + +RA G L+V++G P E P+ + K + PY + RDG V +
Sbjct: 57 LREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVRE 110
>sp|Q3IPX9|CRYD_NATPD Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=cry PE=3 SV=1
Length = 474
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 11/145 (7%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGP-----NR 60
+ AV W R +R+ DNP L A+ + ++ P+Y DP GP +R
Sbjct: 2 DTAVVWFRDDLRVTDNPTLADAV----AAAETVI--PVYTFDPDRYTESEYGPPKTGGHR 55
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
F +Q++ADL R G L V G+P V P++ + + + ++R
Sbjct: 56 AVFRRQAVADLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKPATEERRRAA 115
Query: 121 LVEDMAKEYKVKVEQHVSHTLYNTN 145
V + + + Q +HTLY+ +
Sbjct: 116 DVASALDDAGIALRQRWTHTLYHPD 140
>sp|P61496|PHR_THET2 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB27 / ATCC BAA-163 / DSM 7039) GN=phr PE=1 SV=1
Length = 420
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R +RLHD+PALL A+ G L +LDP+ ++ P R + +++
Sbjct: 7 WHRGDLRLHDHPALLEALARGPVVG-------LVVLDPNN---LKTTPRRRAWFLENVRA 56
Query: 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
L + +RA G L+V++G P E P+ + K + PY + RD V++
Sbjct: 57 LREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSYTPYGRYRDAKVQE 110
>sp|Q5IFN2|CRYD_OSTTA Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus
tauri GN=Ot01g06320 PE=3 SV=1
Length = 546
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 14/150 (9%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILD-----PHFRKFMRVGPNRWRF 63
V W R +RL DN + A +E ++ + P+Y+ D P R R G R +F
Sbjct: 7 VIWFRNDLRLLDNACVARAATLASES-SDVEVVPVYVFDETYFKPSKRGLARFGAGRGKF 65
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW--NIKLLTWEYDIEPYAKKRDGL 121
+ + DL RALGS L V GK +V ++ T + ++ + ++ + D
Sbjct: 66 TLECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLTGANDRTIILTQTEVTSEETEMDVA 125
Query: 122 VEDMAKEY------KVKVEQHVSHTLYNTN 145
VE +E +E+H TLY+ +
Sbjct: 126 VERATRERARGGAASATMERHWGSTLYHID 155
>sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=CRYD PE=2 SV=1
Length = 582
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 3 GTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-------HFRKFMR 55
G A+ W R +R+ DN A++ A + + P+Y +DP H+ F +
Sbjct: 81 GGGGVAIVWFRNDLRVLDNEAVVRAWAASDA------VLPVYCVDPRISAGSTHYFGFPK 134
Query: 56 VGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99
G R +FL + L DL + G L + GKPE++ P I K
Sbjct: 135 TGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKA 178
>sp|Q38JU2|CRYD_SOLLC Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum
lycopersicum GN=CRYD PE=3 SV=2
Length = 577
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 27/140 (19%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP------HFRKFMRVGPNRW 61
A+ W R +R+ DN ALL A + IL P+Y +DP H+ + G R
Sbjct: 80 AIVWFRNDLRVLDNEALLRAW----VSSEAIL--PVYCVDPRLFGTTHYFGMPKTGALRA 133
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
+F+ + L DL + G L + GKPE++ P + K + + YA K
Sbjct: 134 QFIIECLNDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAYKAHTV--------YAHK---- 181
Query: 122 VEDMAKEYKVKVEQHVSHTL 141
E ++E VKVE+ V+ L
Sbjct: 182 -ETCSEE--VKVEKMVTRNL 198
>sp|Q7UJB1|CRYD_RHOBA Cryptochrome DASH OS=Rhodopirellula baltica (strain SH1) GN=cry
PE=3 SV=2
Length = 488
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 21/146 (14%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-HFRK----FMRVGPNRWR 62
A+ W R +R D+ L A ++ +DP F F R GP R R
Sbjct: 4 ALVWFRNDLRTIDHEPFLRASTADR-------CFAVHCIDPRQFETTELGFQRTGPFRAR 56
Query: 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLV 122
FL ++L DL + R+LG L V G+PE V + + I + + + EP ++
Sbjct: 57 FLIENLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHH--EPRTEE----- 109
Query: 123 EDMAKEYKVKVEQH--VSHTLYNTNL 146
D A+ + +QH +H Y L
Sbjct: 110 ADTAESVQQLCDQHGIATHVAYGDTL 135
>sp|Q9HQ46|PHR_HALSA Deoxyribodipyrimidine photo-lyase OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=phr PE=3
SV=2
Length = 481
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
Query: 11 WIRKGMRLHDNPAL------LSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFL 64
W R+ +R DN L ++A++ +++G + ++ D P R F+
Sbjct: 5 WHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGP---VAAVFCFDDEV--LAHAAPPRVAFM 59
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
+LA L +++R LGS L V G P V P + + + W +D A RD V D
Sbjct: 60 LDALAALRERYRDLGSDLIVRHGDPAAVLPAVANDLDATRVVWNHDYSGLATDRDAGVRD 119
>sp|Q96524|CRY2_ARATH Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2
Length = 612
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFR-KFMRVGPNRWRFLQQ 66
+ W R+ +R+ DNPAL +A + + + P++I P +F +RW +++Q
Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEGS-------VFPVFIWCPEEEGQFYPGRASRW-WMKQ 58
Query: 67 SLADLDQKFRALGSRLYVVQGKPE-EVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
SLA L Q +ALGS L +++ D + + + + +P + RD V++
Sbjct: 59 SLAHLSQSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEK 118
Query: 126 AKEYKVKVEQHVSHTLY 142
E + V+ + LY
Sbjct: 119 LVERGISVQSYNGDLLY 135
>sp|P40115|CRY1_SINAL Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1
Length = 501
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFR-KFMRVGPNRWRFLQQ 66
+ W R+ +R+ DNPAL +A + + + P++I P +F +RW +++Q
Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEGS-------VFPVFIWCPEEEGQFYPGRASRW-WMKQ 58
Query: 67 SLADLDQKFRALGSRLYVVQGKPE-EVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
SLA L Q +ALGS L +++ D + + + + +P + RD V++
Sbjct: 59 SLAHLRQSLKALGSELTLIKTHSTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTVKEK 118
Query: 126 AKEYKVKVEQH 136
E + V+ +
Sbjct: 119 LVERGISVQSY 129
>sp|Q04449|PHR_BACPE Deoxyribodipyrimidine photo-lyase OS=Bacillus pseudofirmus
(strain OF4) GN=phr PE=3 SV=2
Length = 479
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 12/103 (11%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR 60
MG + W R+ RLHD+ AL AI + G L + LDP K V P
Sbjct: 1 MGNSDSLKAVWFRRDFRLHDHTALKHAIEAIEKHGGKWL--AFFYLDP---KTASVEPVH 55
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPE-------EVFPDI 96
+ Q++ Q + G LY++ G E + FP+I
Sbjct: 56 HDYFFQTVMQFKQMLKTNGGDLYIITGTIEGALSKLLQAFPEI 98
>sp|P12768|PHR_STRGR Deoxyribodipyrimidine photo-lyase OS=Streptomyces griseus GN=phr
PE=3 SV=1
Length = 455
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AV +RLHDNP L +A+ +E + PL++ D + PN FL
Sbjct: 4 AVVLFTSDLRLHDNPVLRAALRDADE------VVPLFVRDDAVHRAGFDAPNPLAFLADC 57
Query: 68 LADLDQKFRALGSRLYVVQGK 88
LA LD R G RL V +G+
Sbjct: 58 LAALDAGLRHRGGRLIVRRGE 78
>sp|P27526|PHR_NEUCR Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=phr-1 PE=3 SV=1
Length = 642
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQ 65
+ VHW + +RLHDN +L A E G ++ LY+L P + P R F+
Sbjct: 135 QAVVHWFKMDLRLHDNRSLWLASQKAKEAGVPLIC--LYVLSPEDLEAHLRAPIRVDFML 192
Query: 66 QSLADLDQKFRALGSRLYVVQGKPEEVFP----DIFKTWNIKLL--TWEYDIE 112
++L L LG L+V + + P ++ K+W L EY+++
Sbjct: 193 RTLEVLKTDLEDLGIPLWVETVEKRKEVPTKIKELMKSWGASHLFCAMEYEVD 245
>sp|Q43125|CRY1_ARATH Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2
Length = 681
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 12/137 (8%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVG-PNRWRFLQQS 67
+ W R+ +R+ DNPAL +A+ G I L++ P G +RW +L+ S
Sbjct: 15 IVWFRRDLRVEDNPALAAAV----RAGPVIA---LFVWAPEEEGHYHPGRVSRW-WLKNS 66
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFP--DIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
LA LD R+LG+ L + + + V D+ K+ + + + +P + RD +D+
Sbjct: 67 LAQLDSSLRSLGTCL-ITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDV 125
Query: 126 AKEYKVKVEQHVSHTLY 142
+ V + LY
Sbjct: 126 LTAQGIAVRSFNADLLY 142
>sp|Q7SI68|CRYD_NEUCR Putative cryptochrome DASH, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=B22I21.260 PE=3 SV=1
Length = 745
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 23/117 (19%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYIL----------------DPH--- 49
++ +R+ +RL DNP N +++ G + LL P+Y+ +PH
Sbjct: 8 IYAMRRELRLSDNPIFHHLSNPESKHGFSHLL-PVYVFPAQQIDLSGFVPKGSENPHPAP 66
Query: 50 ---FRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIK 103
+ R GP R +FL +S+ DL +++GS L V G ++V + + K
Sbjct: 67 KSAVGGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAK 123
>sp|Q9KR33|CRYD_VIBCH Cryptochrome DASH OS=Vibrio cholerae serotype O1 (strain ATCC 39315
/ El Tor Inaba N16961) GN=cry1 PE=1 SV=1
Length = 461
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 8/137 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRV---GPNRWRFL 64
++W +R++DNP L A + + I L + P ++ + G + RFL
Sbjct: 6 GLYWFTNDLRVNDNPLLEQA---SQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
Q+LADLD LG +L+V P + + +++ D + +R +
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLT--QVEITDIYVDAVAGSDERQAIARI 120
Query: 125 MAKEYKVKVEQHVSHTL 141
V + Q H+L
Sbjct: 121 HQDFSSVHIHQQALHSL 137
>sp|Q4I1Q6|CRYD_GIBZE Putative cryptochrome DASH OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=FGSG_08852 PE=3
SV=1
Length = 678
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 25/115 (21%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH------------------- 49
V+ +R+ +R DNP L ++ G LL P+YIL PH
Sbjct: 8 VYLLRRDLRATDNPILHHLAT--SDHGFTHLL-PIYILPPHQIETSGFVVEGQKSPYPLA 64
Query: 50 ---FRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWN 101
+F R GP R +F + + D+ + F +GS + + GK ++V + K+ N
Sbjct: 65 KSQVGRFWRCGPLRAKFQAECIWDVKKNFENIGSGMLIRIGKFDDVLKHLIKSLN 119
>sp|Q87JP5|CRYD_VIBPA Cryptochrome DASH OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=cry PE=3 SV=1
Length = 445
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 59/139 (42%), Gaps = 4/139 (2%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
++W +RLHDN L+ A ++ +E + HF + + +G R +F+ S
Sbjct: 6 GLYWFTFDLRLHDNSLLVDASSFLDELVCLYCRPSVTPFLHHFAQEVTLGRARQKFIDAS 65
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L +L+ LG RL+ + P + + ++ L Y ++ +
Sbjct: 66 LCELNDALGQLGQRLWTLDLPPYQALKYAIQYLSVTHL---YSDAMAGSDEQSILHKLQD 122
Query: 128 EY-KVKVEQHVSHTLYNTN 145
EY + + QH +L++ +
Sbjct: 123 EYPHLVIVQHSVRSLFDES 141
>sp|Q9SB00|PHR_ARATH Deoxyribodipyrimidine photo-lyase OS=Arabidopsis thaliana GN=PHR1
PE=2 SV=1
Length = 496
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
V+W+ + RL DN AL+ A++ N P+ ++ F +F+ + F+ +
Sbjct: 30 VVYWMFRDQRLKDNWALIHAVDLANRTNA-----PVAVVFNLFDQFLDAKARQLGFMLKG 84
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIF 97
L L + +L +++QG +E P+
Sbjct: 85 LRQLHHQIDSLQIPFFLLQGDAKETIPNFL 114
>sp|P58818|PHR_METTM Deoxyribodipyrimidine photo-lyase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=phr PE=1 SV=2
Length = 444
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
++W++ +R H N AL AI + N L KPL ++ +F +RFL + L
Sbjct: 23 IYWMQASVRAHWNHALEYAI-----ETANSLHKPLIVIFGLTDEFPNANSRHYRFLIEGL 77
Query: 69 ADLDQKFRALGSRLYVVQGKP 89
D+ G+RL V +P
Sbjct: 78 RDVGDALMKRGARLVVENERP 98
>sp|P12769|PHR_METTH Deoxyribodipyrimidine photo-lyase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=phr PE=3 SV=2
Length = 445
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
V+W++ +R H N AL AI + N L KPL ++ F +RFL + L
Sbjct: 23 VYWMQASVRSHWNHALEYAI-----ETANSLKKPLIVVFGLTDDFPNANSRHYRFLIEGL 77
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVF 93
D+ R G +L V + P V
Sbjct: 78 RDVRSNLRERGIQLVVERDSPPSVL 102
>sp|Q9KNA8|PHR_VIBCH Deoxyribodipyrimidine photo-lyase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=phrA PE=1
SV=1
Length = 469
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 10/125 (8%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLAD 70
W R+ +R DN AL +A+N + + +YI P + P + + + LA+
Sbjct: 5 WFRRDLRSFDNTALTAALNSGDP------VAAMYIATPEQWHQHHLAPIQADLIWRRLAE 58
Query: 71 LDQKFRALGSRLYVVQ----GKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
L Q+ AL L+ Q + KT N + D E ++RD L + +
Sbjct: 59 LQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLL 118
Query: 127 KEYKV 131
E +
Sbjct: 119 SEQGI 123
>sp|Q1MPS7|MNMG_LAWIP tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=mnmG
PE=3 SV=1
Length = 622
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 46 LDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLL 105
L P RK VG +W Q+ ++D+D L +RL ++ KP+ + P IF +
Sbjct: 445 LTPLGRKIGLVGDYQWNLFQKKISDID----TLVNRLQNIRIKPDTLDPSIFLELGESIP 500
Query: 106 TWEYDIEPYAKKRDGLVEDMAKEYK 130
Y +E K+ + + K Y
Sbjct: 501 NRAYTLEELLKRPSITFQTLRKIYS 525
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,905,287
Number of Sequences: 539616
Number of extensions: 2378140
Number of successful extensions: 5563
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 5476
Number of HSP's gapped (non-prelim): 69
length of query: 146
length of database: 191,569,459
effective HSP length: 106
effective length of query: 40
effective length of database: 134,370,163
effective search space: 5374806520
effective search space used: 5374806520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)