Query psy9352
Match_columns 146
No_of_seqs 150 out of 1017
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 16:58:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fy4_A 6-4 photolyase; DNA rep 100.0 7.3E-38 2.5E-42 259.6 12.9 138 1-145 1-147 (537)
2 3tvs_A Cryptochrome-1; circadi 100.0 6.2E-37 2.1E-41 254.3 13.0 137 6-145 4-143 (538)
3 1np7_A DNA photolyase; protein 100.0 3E-34 1E-38 236.0 17.5 135 6-146 6-145 (489)
4 2wq7_A RE11660P; lyase-DNA com 100.0 1.3E-34 4.6E-39 240.7 14.7 139 7-145 30-168 (543)
5 1owl_A Photolyase, deoxyribodi 100.0 3.4E-34 1.2E-38 235.5 16.9 134 7-146 4-137 (484)
6 2e0i_A 432AA long hypothetical 100.0 1.6E-34 5.6E-39 234.9 14.3 130 8-145 3-133 (440)
7 3umv_A Deoxyribodipyrimidine p 100.0 1.2E-33 3.9E-38 233.2 15.3 136 6-145 38-175 (506)
8 2j4d_A Cryptochrome 3, cryptoc 100.0 3E-33 1E-37 231.7 17.5 135 6-146 40-182 (525)
9 1dnp_A DNA photolyase; DNA rep 100.0 4.6E-34 1.6E-38 234.0 11.3 132 7-146 2-138 (471)
10 1u3d_A Cryptochrome 1 apoprote 100.0 1.2E-32 4.2E-37 227.4 17.1 134 6-146 12-146 (509)
11 2j07_A Deoxyribodipyrimidine p 100.0 2E-32 6.7E-37 221.6 15.6 128 6-146 2-129 (420)
12 2xry_A Deoxyribodipyrimidine p 100.0 2.5E-31 8.5E-36 218.3 12.8 131 7-145 38-168 (482)
13 3zxs_A Cryptochrome B, rscryb; 99.0 1E-09 3.5E-14 90.5 8.0 123 7-145 16-147 (522)
14 3s3t_A Nucleotide-binding prot 96.3 0.013 4.5E-07 38.9 6.8 120 15-136 13-145 (146)
15 2dum_A Hypothetical protein PH 96.3 0.081 2.8E-06 36.1 10.7 122 15-138 13-156 (170)
16 3hgm_A Universal stress protei 96.1 0.058 2E-06 35.6 9.0 115 19-135 14-146 (147)
17 3fdx_A Putative filament prote 96.1 0.073 2.5E-06 35.0 9.4 113 20-136 16-142 (143)
18 3tnj_A Universal stress protei 96.0 0.076 2.6E-06 35.3 9.4 122 15-138 14-147 (150)
19 1mjh_A Protein (ATP-binding do 95.9 0.16 5.6E-06 34.1 10.7 122 15-138 13-159 (162)
20 3dlo_A Universal stress protei 95.5 0.24 8.4E-06 33.4 10.5 116 15-136 32-154 (155)
21 1jmv_A USPA, universal stress 95.1 0.39 1.3E-05 31.3 11.1 120 15-138 10-138 (141)
22 3idf_A USP-like protein; unive 94.7 0.29 9.8E-06 31.9 8.7 88 19-110 13-110 (138)
23 2z08_A Universal stress protei 94.2 0.21 7.2E-06 32.6 7.1 113 19-136 14-136 (137)
24 3fg9_A Protein of universal st 94.1 0.77 2.6E-05 30.5 11.3 116 19-136 29-155 (156)
25 1q77_A Hypothetical protein AQ 94.1 0.52 1.8E-05 30.6 8.8 112 15-136 12-137 (138)
26 3loq_A Universal stress protei 94.0 0.46 1.6E-05 35.2 9.3 109 15-138 178-290 (294)
27 3rjz_A N-type ATP pyrophosphat 93.3 0.25 8.4E-06 36.7 6.7 98 22-135 19-121 (237)
28 3loq_A Universal stress protei 93.2 1 3.5E-05 33.3 10.1 120 15-139 30-163 (294)
29 3mt0_A Uncharacterized protein 93.1 0.74 2.5E-05 34.1 9.1 116 21-138 155-276 (290)
30 3olq_A Universal stress protei 92.4 2.6 8.8E-05 31.3 14.5 120 21-142 177-309 (319)
31 3fvv_A Uncharacterized protein 92.2 1.2 4E-05 31.3 8.9 66 65-130 94-172 (232)
32 1tq8_A Hypothetical protein RV 91.8 1.4 4.9E-05 29.7 8.6 120 15-138 25-158 (163)
33 3olq_A Universal stress protei 90.1 4.5 0.00015 29.9 12.8 129 7-139 9-151 (319)
34 2gm3_A Unknown protein; AT3G01 89.7 3.3 0.00011 27.9 13.7 119 21-139 28-164 (175)
35 3mt0_A Uncharacterized protein 89.3 2.5 8.6E-05 31.1 8.7 115 6-137 8-127 (290)
36 2pr7_A Haloacid dehalogenase/e 87.7 1.3 4.5E-05 28.2 5.5 75 63-138 18-99 (137)
37 3n07_A 3-deoxy-D-manno-octulos 85.5 2.2 7.4E-05 30.1 6.0 53 73-131 62-114 (195)
38 3h75_A Periplasmic sugar-bindi 85.4 8.7 0.0003 28.7 9.8 73 62-139 17-95 (350)
39 3kzx_A HAD-superfamily hydrola 84.2 2.4 8.3E-05 29.5 5.8 72 67-139 107-186 (231)
40 3mmz_A Putative HAD family hyd 84.1 2.2 7.4E-05 29.3 5.4 54 71-131 47-100 (176)
41 3e8m_A Acylneuraminate cytidyl 83.5 3.2 0.00011 27.6 6.0 54 72-131 40-93 (164)
42 3n1u_A Hydrolase, HAD superfam 83.4 3.8 0.00013 28.5 6.5 61 72-138 55-118 (191)
43 3ij5_A 3-deoxy-D-manno-octulos 83.3 1.6 5.5E-05 31.2 4.6 55 71-131 84-138 (211)
44 3qk7_A Transcriptional regulat 83.1 11 0.00037 27.4 9.3 72 62-139 23-97 (294)
45 3mn1_A Probable YRBI family ph 82.4 1.9 6.3E-05 30.0 4.5 55 71-131 54-108 (189)
46 3gv0_A Transcriptional regulat 82.0 8.8 0.0003 27.8 8.4 71 63-139 24-98 (288)
47 2iel_A Hypothetical protein TT 81.3 9.5 0.00032 25.8 7.4 71 65-137 57-134 (138)
48 2r8e_A 3-deoxy-D-manno-octulos 80.9 3.1 0.00011 28.7 5.2 55 71-131 61-115 (188)
49 3ab8_A Putative uncharacterize 80.2 2.1 7.3E-05 30.9 4.4 116 19-138 12-149 (268)
50 3nvb_A Uncharacterized protein 80.2 6 0.0002 31.3 7.2 63 63-131 256-326 (387)
51 3l49_A ABC sugar (ribose) tran 80.0 14 0.00048 26.5 9.9 73 62-139 18-95 (291)
52 1vp8_A Hypothetical protein AF 79.9 6.7 0.00023 28.2 6.6 70 66-135 30-103 (201)
53 2p9j_A Hypothetical protein AQ 79.8 10 0.00036 24.9 9.7 56 70-131 43-98 (162)
54 3e58_A Putative beta-phosphogl 79.4 7.2 0.00025 26.1 6.7 65 66-131 92-160 (214)
55 3p96_A Phosphoserine phosphata 79.3 11 0.00036 29.4 8.4 72 67-138 260-347 (415)
56 3rfu_A Copper efflux ATPase; a 78.8 5.5 0.00019 34.1 7.0 60 72-136 563-622 (736)
57 1k1e_A Deoxy-D-mannose-octulos 78.7 6.2 0.00021 26.8 6.2 55 71-131 43-97 (180)
58 3n28_A Phosphoserine phosphata 78.7 12 0.0004 28.1 8.3 73 67-139 182-270 (335)
59 3ab8_A Putative uncharacterize 78.2 2.6 9E-05 30.4 4.3 79 15-109 162-242 (268)
60 3cis_A Uncharacterized protein 78.2 1.8 6.2E-05 32.2 3.5 120 15-138 179-306 (309)
61 4eze_A Haloacid dehalogenase-l 78.1 11 0.00037 28.5 7.9 72 67-138 183-270 (317)
62 2no4_A (S)-2-haloacid dehaloge 77.6 10 0.00035 26.4 7.3 64 67-131 109-176 (240)
63 1zrn_A L-2-haloacid dehalogena 76.8 12 0.0004 25.8 7.3 64 67-131 99-166 (232)
64 3sd7_A Putative phosphatase; s 76.4 7 0.00024 27.2 6.1 65 67-132 114-182 (240)
65 3m1y_A Phosphoserine phosphata 76.3 10 0.00035 25.8 6.9 73 67-139 79-167 (217)
66 3um9_A Haloacid dehalogenase, 76.1 11 0.00037 25.8 7.0 64 67-131 100-167 (230)
67 2nyv_A Pgpase, PGP, phosphogly 75.8 6.6 0.00022 27.3 5.8 44 67-110 87-134 (222)
68 3ksm_A ABC-type sugar transpor 75.7 13 0.00045 26.3 7.5 74 62-139 13-93 (276)
69 3k4h_A Putative transcriptiona 75.5 20 0.00067 25.7 8.8 72 62-139 26-101 (292)
70 3nkl_A UDP-D-quinovosamine 4-d 75.2 9.1 0.00031 24.8 6.0 47 90-138 54-100 (141)
71 3jy6_A Transcriptional regulat 75.0 20 0.00069 25.6 10.0 71 62-139 20-94 (276)
72 8abp_A L-arabinose-binding pro 74.7 20 0.00069 25.8 8.5 72 62-138 15-90 (306)
73 3hcw_A Maltose operon transcri 74.7 21 0.00073 25.8 8.8 72 62-139 25-100 (295)
74 3l8h_A Putative haloacid dehal 74.6 5.5 0.00019 26.7 5.0 43 65-107 29-88 (179)
75 3ib6_A Uncharacterized protein 74.6 8.5 0.00029 26.3 6.0 47 64-110 35-88 (189)
76 3huu_A Transcription regulator 74.4 20 0.00069 26.0 8.4 73 62-140 40-116 (305)
77 3mc1_A Predicted phosphatase, 74.3 8.2 0.00028 26.4 5.9 72 67-139 90-168 (226)
78 4gxt_A A conserved functionall 74.3 2.3 7.8E-05 33.5 3.2 39 64-102 222-260 (385)
79 1z9b_A Translation initiation 74.1 13 0.00043 25.0 6.5 65 66-137 52-122 (135)
80 3tb6_A Arabinose metabolism tr 73.8 21 0.00072 25.5 8.3 75 63-139 29-108 (298)
81 1b43_A Protein (FEN-1); nuclea 73.2 15 0.00052 28.1 7.6 42 66-107 130-171 (340)
82 3u80_A 3-dehydroquinate dehydr 73.1 19 0.00065 24.7 7.2 78 66-145 29-114 (151)
83 4ex6_A ALNB; modified rossman 72.3 5.4 0.00019 27.6 4.6 70 68-138 109-185 (237)
84 2pib_A Phosphorylated carbohyd 72.3 5.9 0.0002 26.6 4.7 64 67-131 88-155 (216)
85 2wem_A Glutaredoxin-related pr 71.8 9 0.00031 24.7 5.2 47 91-140 39-86 (118)
86 3cis_A Uncharacterized protein 71.4 16 0.00055 26.9 7.3 116 20-139 32-162 (309)
87 2lnd_A De novo designed protei 71.4 15 0.00052 22.6 6.0 62 66-130 38-103 (112)
88 2wm8_A MDP-1, magnesium-depend 71.2 16 0.00055 24.7 6.8 62 66-131 71-135 (187)
89 2hoq_A Putative HAD-hydrolase 71.1 17 0.00057 25.3 7.0 72 66-138 97-175 (241)
90 3j08_A COPA, copper-exporting 71.0 9.7 0.00033 31.9 6.5 55 69-127 463-517 (645)
91 2hsz_A Novel predicted phospha 70.8 8.5 0.00029 27.2 5.4 63 68-131 119-185 (243)
92 4fe7_A Xylose operon regulator 70.6 17 0.0006 28.0 7.5 69 62-138 37-105 (412)
93 2hi0_A Putative phosphoglycola 69.7 10 0.00036 26.5 5.7 63 68-131 115-180 (240)
94 3egc_A Putative ribose operon 69.5 28 0.00097 24.9 8.3 72 62-139 21-96 (291)
95 1l7m_A Phosphoserine phosphata 69.2 21 0.00071 23.8 7.0 73 67-139 80-168 (211)
96 2l82_A Designed protein OR32; 68.9 21 0.00072 23.3 7.5 51 84-138 7-60 (162)
97 3cnh_A Hydrolase family protei 68.6 15 0.00052 24.6 6.2 65 65-131 88-156 (200)
98 3umb_A Dehalogenase-like hydro 67.9 9.6 0.00033 26.2 5.1 64 67-131 103-170 (233)
99 3i8o_A KH domain-containing pr 67.8 25 0.00086 23.7 8.5 87 40-138 33-132 (142)
100 3v7e_A Ribosome-associated pro 67.7 13 0.00045 22.4 5.0 42 94-138 20-61 (82)
101 3s6j_A Hydrolase, haloacid deh 67.3 9.8 0.00034 26.0 5.0 65 67-132 95-163 (233)
102 3mpo_A Predicted hydrolase of 67.3 31 0.0011 24.6 9.9 67 73-142 32-117 (279)
103 2ioj_A Hypothetical protein AF 66.9 19 0.00065 23.6 6.2 54 81-139 54-107 (139)
104 1nf2_A Phosphatase; structural 66.8 33 0.0011 24.6 8.2 74 67-142 24-111 (268)
105 3l6u_A ABC-type sugar transpor 66.6 32 0.0011 24.5 10.0 73 62-139 21-98 (293)
106 3kbb_A Phosphorylated carbohyd 66.4 9.1 0.00031 26.2 4.7 64 67-131 88-155 (216)
107 3gkn_A Bacterioferritin comigr 66.2 15 0.0005 24.1 5.6 45 63-107 53-97 (163)
108 3j09_A COPA, copper-exporting 66.0 18 0.00061 30.7 7.1 54 70-127 542-595 (723)
109 3m9l_A Hydrolase, haloacid deh 66.0 12 0.00041 25.3 5.2 64 67-132 74-143 (205)
110 2om6_A Probable phosphoserine 65.3 18 0.00062 24.6 6.1 66 66-132 102-174 (235)
111 3g1w_A Sugar ABC transporter; 64.5 33 0.0011 24.7 7.7 72 63-139 18-95 (305)
112 2zg6_A Putative uncharacterize 64.5 11 0.00039 25.9 4.9 66 66-133 98-167 (220)
113 2pq0_A Hypothetical conserved 64.4 35 0.0012 24.1 8.8 65 73-140 30-108 (258)
114 2i6x_A Hydrolase, haloacid deh 64.2 18 0.00061 24.4 5.8 65 66-132 92-166 (211)
115 3kip_A 3-dehydroquinase, type 63.9 34 0.0012 23.8 8.1 65 76-144 55-123 (167)
116 3uug_A Multiple sugar-binding 63.5 40 0.0014 24.5 8.9 72 63-139 17-93 (330)
117 3e61_A Putative transcriptiona 62.9 37 0.0013 24.0 8.9 71 62-139 21-95 (277)
118 3fzq_A Putative hydrolase; YP_ 62.9 28 0.00095 24.6 6.9 67 73-142 32-112 (274)
119 1ccw_A Protein (glutamate muta 62.8 29 0.001 22.7 8.1 68 73-142 25-96 (137)
120 3m9w_A D-xylose-binding peripl 62.8 41 0.0014 24.4 8.6 72 63-139 16-92 (313)
121 1gqo_A Dehydroquinase; dehydra 62.7 33 0.0011 23.2 9.1 73 69-145 32-107 (143)
122 1h05_A 3-dehydroquinate dehydr 62.5 34 0.0012 23.3 7.9 73 69-145 34-109 (146)
123 3ixr_A Bacterioferritin comigr 62.4 15 0.0005 24.9 5.1 44 64-107 70-113 (179)
124 4fe3_A Cytosolic 5'-nucleotida 62.3 10 0.00035 28.0 4.5 43 67-109 145-191 (297)
125 3zyw_A Glutaredoxin-3; metal b 62.2 16 0.00055 23.1 4.9 48 91-141 35-82 (111)
126 1pq4_A Periplasmic binding pro 61.5 39 0.0013 25.2 7.6 41 68-108 226-267 (291)
127 3uhf_A Glutamate racemase; str 61.3 25 0.00087 26.2 6.5 59 42-103 52-112 (274)
128 3kke_A LACI family transcripti 61.1 44 0.0015 24.2 8.6 71 63-139 29-103 (303)
129 2yvq_A Carbamoyl-phosphate syn 60.9 33 0.0011 22.7 7.5 43 93-135 88-130 (143)
130 2ah5_A COG0546: predicted phos 60.5 34 0.0012 23.2 6.8 69 67-139 88-163 (210)
131 1t57_A Conserved protein MTH16 60.4 5.6 0.00019 28.7 2.6 69 66-135 38-110 (206)
132 3k9c_A Transcriptional regulat 60.2 44 0.0015 23.9 8.5 70 62-139 24-97 (289)
133 2xzm_U Ribosomal protein L7AE 59.6 34 0.0012 22.4 6.5 42 95-138 34-75 (126)
134 1nu0_A Hypothetical protein YQ 59.6 32 0.0011 22.9 6.2 19 90-108 42-60 (138)
135 2o2x_A Hypothetical protein; s 59.5 14 0.00048 25.7 4.6 43 66-108 59-118 (218)
136 2fi1_A Hydrolase, haloacid deh 59.2 19 0.00064 23.8 5.1 72 66-139 85-161 (190)
137 3dbi_A Sugar-binding transcrip 58.8 51 0.0018 24.2 10.3 73 62-139 76-152 (338)
138 3n8k_A 3-dehydroquinate dehydr 58.6 44 0.0015 23.3 7.5 71 70-144 61-134 (172)
139 3out_A Glutamate racemase; str 58.1 42 0.0015 24.8 7.3 61 42-105 35-98 (268)
140 2qh8_A Uncharacterized protein 57.9 42 0.0015 24.4 7.3 69 68-140 158-230 (302)
141 3lwz_A 3-dehydroquinate dehydr 57.8 43 0.0015 23.0 8.4 71 71-145 41-114 (153)
142 3dao_A Putative phosphatse; st 57.2 51 0.0018 23.7 8.4 66 74-142 50-132 (283)
143 1sur_A PAPS reductase; assimil 57.0 47 0.0016 23.2 9.5 71 66-138 31-105 (215)
144 1te2_A Putative phosphatase; s 56.8 41 0.0014 22.5 7.1 64 68-132 99-166 (226)
145 1nnl_A L-3-phosphoserine phosp 56.5 44 0.0015 22.7 7.4 37 67-103 90-126 (225)
146 4eek_A Beta-phosphoglucomutase 56.4 11 0.00038 26.5 3.7 65 67-131 114-183 (259)
147 3ist_A Glutamate racemase; str 56.4 44 0.0015 24.7 7.1 61 42-105 33-95 (269)
148 2lbw_A H/ACA ribonucleoprotein 56.1 32 0.0011 22.2 5.6 41 95-137 30-70 (121)
149 3drn_A Peroxiredoxin, bacterio 56.0 22 0.00076 23.3 5.0 45 63-107 47-91 (161)
150 1tp9_A Peroxiredoxin, PRX D (t 55.2 25 0.00087 23.2 5.2 38 65-102 56-94 (162)
151 3qnm_A Haloacid dehalogenase-l 55.2 34 0.0012 23.2 6.1 62 68-131 112-177 (240)
152 3rot_A ABC sugar transporter, 55.1 56 0.0019 23.5 9.0 73 62-139 16-95 (297)
153 2wul_A Glutaredoxin related pr 54.6 29 0.001 22.5 5.2 11 92-102 40-50 (118)
154 3d6j_A Putative haloacid dehal 54.6 32 0.0011 23.0 5.8 65 67-132 93-161 (225)
155 2oda_A Hypothetical protein ps 54.4 15 0.0005 25.5 4.0 65 65-131 38-102 (196)
156 3raz_A Thioredoxin-related pro 54.3 16 0.00054 23.6 3.9 45 63-107 41-85 (151)
157 3e3m_A Transcriptional regulat 54.2 64 0.0022 23.9 10.3 71 62-138 83-157 (355)
158 3bbl_A Regulatory protein of L 53.9 57 0.002 23.2 8.1 70 63-139 22-96 (287)
159 1rkq_A Hypothetical protein YI 53.5 42 0.0015 24.2 6.6 68 74-141 33-117 (282)
160 2uyg_A 3-dehydroquinate dehydr 53.5 50 0.0017 22.5 9.2 73 69-145 31-107 (149)
161 2rjo_A Twin-arginine transloca 53.4 63 0.0022 23.6 9.6 72 62-138 18-96 (332)
162 3ewi_A N-acylneuraminate cytid 53.4 11 0.00038 25.7 3.1 50 73-131 46-97 (168)
163 3o74_A Fructose transport syst 53.0 56 0.0019 22.9 9.3 73 62-139 15-91 (272)
164 3skx_A Copper-exporting P-type 52.8 23 0.00079 25.0 4.9 43 66-108 147-189 (280)
165 1uqr_A 3-dehydroquinate dehydr 52.7 53 0.0018 22.5 9.3 74 68-145 32-108 (154)
166 4dw8_A Haloacid dehalogenase-l 52.6 59 0.002 23.0 10.2 68 73-143 32-119 (279)
167 2wfc_A Peroxiredoxin 5, PRDX5; 52.5 30 0.001 23.2 5.3 40 64-103 51-91 (167)
168 1l6r_A Hypothetical protein TA 52.2 27 0.00091 24.7 5.2 32 73-104 32-63 (227)
169 3d8u_A PURR transcriptional re 52.0 59 0.002 22.8 8.1 70 62-138 16-90 (275)
170 3gbv_A Putative LACI-family tr 51.6 58 0.002 23.2 7.1 72 63-139 23-103 (304)
171 3clk_A Transcription regulator 51.6 57 0.002 23.2 7.0 70 63-139 22-97 (290)
172 2ioy_A Periplasmic sugar-bindi 51.4 63 0.0021 23.0 9.7 72 62-138 14-90 (283)
173 2fep_A Catabolite control prot 51.3 64 0.0022 23.1 10.3 71 62-139 29-104 (289)
174 3k1z_A Haloacid dehalogenase-l 51.0 38 0.0013 24.0 5.9 62 68-131 111-176 (263)
175 2go7_A Hydrolase, haloacid deh 50.7 24 0.00084 23.1 4.6 64 67-132 89-156 (207)
176 2inf_A URO-D, UPD, uroporphyri 50.7 52 0.0018 25.0 6.9 63 42-108 209-272 (359)
177 3dnp_A Stress response protein 50.5 66 0.0022 23.0 8.7 69 74-142 34-115 (290)
178 3a1c_A Probable copper-exporti 50.0 26 0.00089 25.5 4.9 41 68-108 168-208 (287)
179 2o8v_A Phosphoadenosine phosph 50.0 70 0.0024 23.1 8.1 70 67-138 33-106 (252)
180 3lyu_A Putative hydrogenase; t 49.6 21 0.00071 23.5 4.0 41 92-137 98-138 (142)
181 3twe_A Alpha4H; unknown functi 49.3 14 0.00047 17.1 2.0 15 64-78 6-20 (27)
182 2jfz_A Glutamate racemase; cel 49.3 53 0.0018 23.8 6.5 60 40-102 26-87 (255)
183 3lmz_A Putative sugar isomeras 49.3 67 0.0023 22.7 7.3 65 66-135 61-131 (257)
184 3mng_A Peroxiredoxin-5, mitoch 49.3 33 0.0011 23.3 5.1 38 66-103 65-103 (173)
185 3l4n_A Monothiol glutaredoxin- 49.1 18 0.00063 23.6 3.6 50 91-140 28-80 (127)
186 2a4v_A Peroxiredoxin DOT5; yea 49.0 36 0.0012 22.1 5.1 44 63-107 53-96 (159)
187 3kjx_A Transcriptional regulat 49.0 77 0.0026 23.3 8.2 68 63-137 82-154 (344)
188 3ddh_A Putative haloacid dehal 48.9 57 0.002 21.8 6.5 58 68-131 110-172 (234)
189 3ipz_A Monothiol glutaredoxin- 48.7 26 0.0009 21.8 4.2 48 91-141 37-84 (109)
190 3v7q_A Probable ribosomal prot 48.6 46 0.0016 20.6 6.1 42 94-138 28-69 (101)
191 3brq_A HTH-type transcriptiona 48.4 70 0.0024 22.6 9.2 69 63-138 35-109 (296)
192 2rgy_A Transcriptional regulat 48.3 72 0.0024 22.7 9.3 70 62-138 21-98 (290)
193 3kd3_A Phosphoserine phosphohy 48.2 24 0.00082 23.5 4.2 37 67-103 86-122 (219)
194 3h5o_A Transcriptional regulat 48.0 79 0.0027 23.2 8.5 70 63-138 76-149 (339)
195 3jyw_G 60S ribosomal protein L 47.9 17 0.00057 23.6 3.1 42 95-138 35-76 (113)
196 2yj3_A Copper-transporting ATP 53.5 3.9 0.00013 29.9 0.0 46 64-109 137-182 (263)
197 3iru_A Phoshonoacetaldehyde hy 47.7 17 0.00058 25.6 3.5 64 68-132 116-184 (277)
198 2ale_A SNU13, NHP2/L7AE family 47.4 29 0.001 23.0 4.4 43 94-138 41-83 (134)
199 3p6l_A Sugar phosphate isomera 47.3 72 0.0025 22.5 8.8 64 66-134 63-132 (262)
200 1ul1_X Flap endonuclease-1; pr 47.0 21 0.00073 27.8 4.2 38 68-105 137-174 (379)
201 2fvy_A D-galactose-binding per 46.9 76 0.0026 22.6 9.4 73 62-139 15-93 (309)
202 2c4w_A 3-dehydroquinate dehydr 46.8 72 0.0025 22.3 8.8 72 70-145 42-119 (176)
203 1mhs_A Proton pump, plasma mem 46.6 59 0.002 28.6 7.2 37 67-103 539-575 (920)
204 1iv0_A Hypothetical protein; r 46.5 30 0.001 21.6 4.1 48 91-139 41-94 (98)
205 1pq4_A Periplasmic binding pro 46.5 51 0.0017 24.5 6.1 44 93-137 200-244 (291)
206 1a76_A Flap endonuclease-1 pro 46.4 23 0.00078 26.9 4.2 39 67-105 131-169 (326)
207 4as2_A Phosphorylcholine phosp 46.3 12 0.00041 28.7 2.6 43 65-107 145-193 (327)
208 3on1_A BH2414 protein; structu 46.1 51 0.0017 20.4 5.5 41 95-138 28-68 (101)
209 3o1i_D Periplasmic protein TOR 46.0 78 0.0027 22.5 8.0 72 62-139 18-96 (304)
210 3q8k_A Flap endonuclease 1; he 45.8 23 0.0008 27.2 4.2 39 65-103 134-172 (341)
211 3uma_A Hypothetical peroxiredo 45.8 35 0.0012 23.4 4.8 39 65-103 77-116 (184)
212 2hcf_A Hydrolase, haloacid deh 45.7 42 0.0014 22.7 5.2 64 67-130 97-165 (234)
213 3jvd_A Transcriptional regulat 45.5 48 0.0016 24.5 5.9 66 62-139 77-145 (333)
214 4a17_F RPL7A, 60S ribosomal pr 45.5 64 0.0022 24.0 6.3 54 81-138 122-175 (255)
215 1gtz_A 3-dehydroquinate dehydr 45.2 72 0.0025 21.9 8.6 74 68-145 37-114 (156)
216 1qq5_A Protein (L-2-haloacid d 45.1 51 0.0017 23.0 5.7 62 67-131 97-162 (253)
217 2aif_A Ribosomal protein L7A; 44.8 64 0.0022 21.2 5.8 43 94-138 50-92 (135)
218 3o0k_A Aldo/keto reductase; ss 44.7 87 0.003 23.1 7.1 45 90-136 166-210 (283)
219 3ar4_A Sarcoplasmic/endoplasmi 44.4 82 0.0028 27.7 7.9 36 68-103 608-643 (995)
220 3lft_A Uncharacterized protein 44.4 52 0.0018 23.7 5.9 68 68-139 151-222 (295)
221 1xbi_A 50S ribosomal protein L 43.9 37 0.0013 21.9 4.4 41 95-137 39-79 (120)
222 2x7x_A Sensor protein; transfe 43.8 91 0.0031 22.7 10.2 71 63-138 19-95 (325)
223 2gzm_A Glutamate racemase; enz 43.7 92 0.0031 22.7 7.7 59 41-102 30-90 (267)
224 3l12_A Putative glycerophospho 43.7 76 0.0026 23.6 6.8 55 69-133 258-312 (313)
225 2qlt_A (DL)-glycerol-3-phospha 43.1 33 0.0011 24.5 4.5 64 67-131 118-185 (275)
226 1nm3_A Protein HI0572; hybrid, 42.8 59 0.002 22.9 5.8 39 65-103 54-93 (241)
227 3dv9_A Beta-phosphoglucomutase 42.8 20 0.00067 24.7 3.1 63 67-131 112-180 (247)
228 3rhb_A ATGRXC5, glutaredoxin-C 42.8 56 0.0019 20.0 5.2 52 90-141 32-84 (113)
229 3hcw_A Maltose operon transcri 42.6 90 0.0031 22.3 7.7 67 67-139 149-230 (295)
230 1vhx_A Putative holliday junct 42.5 48 0.0016 22.3 4.9 49 68-116 44-105 (150)
231 1vq8_F 50S ribosomal protein L 42.5 51 0.0017 21.1 4.9 42 95-138 39-80 (120)
232 3ory_A Flap endonuclease 1; hy 42.1 29 0.00098 27.0 4.2 32 68-99 146-177 (363)
233 3ujp_A Mn transporter subunit; 42.1 1.1E+02 0.0037 23.0 9.3 70 64-138 168-247 (307)
234 3tva_A Xylose isomerase domain 42.0 93 0.0032 22.3 8.5 44 66-109 51-123 (290)
235 3bil_A Probable LACI-family tr 41.8 1E+02 0.0035 22.8 9.8 71 62-139 79-154 (348)
236 1yx1_A Hypothetical protein PA 41.7 91 0.0031 22.1 7.1 67 68-135 53-130 (264)
237 1nrw_A Hypothetical protein, h 41.6 96 0.0033 22.3 9.6 70 73-142 31-113 (288)
238 2lqo_A Putative glutaredoxin R 41.4 30 0.001 21.1 3.5 53 90-145 17-71 (92)
239 3j21_Z 50S ribosomal protein L 41.2 61 0.0021 19.9 6.9 40 94-136 24-63 (99)
240 1n8j_A AHPC, alkyl hydroperoxi 41.2 49 0.0017 22.3 5.0 37 64-100 49-85 (186)
241 3gi1_A LBP, laminin-binding pr 41.0 1.1E+02 0.0036 22.7 9.0 14 64-77 159-172 (286)
242 2gfh_A Haloacid dehalogenase-l 41.0 85 0.0029 22.2 6.5 64 66-131 124-191 (260)
243 4f82_A Thioredoxin reductase; 40.9 73 0.0025 22.0 5.8 39 65-103 68-107 (176)
244 2izo_A FEN1, flap structure-sp 40.7 31 0.0011 26.5 4.2 40 66-105 127-166 (346)
245 3d02_A Putative LACI-type tran 40.4 97 0.0033 22.0 9.9 73 62-139 17-95 (303)
246 1w41_A 50S ribosomal protein L 40.4 63 0.0022 19.9 5.8 40 94-136 25-64 (101)
247 3iz5_H 60S ribosomal protein L 40.2 63 0.0021 24.0 5.5 54 81-138 125-178 (258)
248 3hs3_A Ribose operon repressor 40.2 44 0.0015 23.8 4.8 67 62-139 23-94 (277)
249 2goy_A Adenosine phosphosulfat 39.6 96 0.0033 22.7 6.6 70 67-138 42-114 (275)
250 2nyt_A Probable C->U-editing e 39.5 97 0.0033 21.8 7.7 58 79-137 84-146 (190)
251 2o20_A Catabolite control prot 39.5 1.1E+02 0.0037 22.3 9.6 70 62-138 76-150 (332)
252 3qxg_A Inorganic pyrophosphata 39.4 16 0.00054 25.4 2.2 63 67-131 113-181 (243)
253 3f7j_A YVGN protein; aldo-keto 39.3 1.1E+02 0.0036 22.4 6.8 16 121-136 174-189 (276)
254 3iht_A S-adenosyl-L-methionine 39.3 84 0.0029 21.9 5.7 43 85-127 88-130 (174)
255 3l7y_A Putative uncharacterize 39.0 1.1E+02 0.0037 22.2 7.7 66 74-142 66-148 (304)
256 4fb5_A Probable oxidoreductase 38.9 98 0.0033 23.2 6.8 65 70-135 85-150 (393)
257 2b0c_A Putative phosphatase; a 38.5 9.2 0.00031 25.8 0.8 65 66-131 94-163 (206)
258 2fc3_A 50S ribosomal protein L 38.5 49 0.0017 21.3 4.4 42 95-138 38-79 (124)
259 3nas_A Beta-PGM, beta-phosphog 38.4 29 0.00098 23.7 3.4 63 66-131 95-161 (233)
260 2w43_A Hypothetical 2-haloalka 38.2 75 0.0026 21.0 5.6 38 73-111 83-124 (201)
261 2jfq_A Glutamate racemase; cel 38.2 1.2E+02 0.0041 22.4 7.0 58 42-102 50-109 (286)
262 3cpq_A 50S ribosomal protein L 38.1 74 0.0025 20.0 5.6 40 94-136 30-69 (110)
263 3nuq_A Protein SSM1, putative 37.9 61 0.0021 23.0 5.3 68 65-132 144-220 (282)
264 3o85_A Ribosomal protein L7AE; 37.9 52 0.0018 21.3 4.4 43 94-138 40-82 (122)
265 3nbm_A PTS system, lactose-spe 37.9 34 0.0012 21.7 3.4 67 61-137 19-85 (108)
266 3lrx_A Putative hydrogenase; a 37.6 66 0.0023 21.3 5.1 38 92-134 103-140 (158)
267 3brs_A Periplasmic binding pro 37.6 1E+02 0.0034 21.7 6.4 72 62-138 20-98 (289)
268 2pwj_A Mitochondrial peroxired 37.5 62 0.0021 21.6 5.0 38 65-102 64-102 (171)
269 2zxe_A Na, K-ATPase alpha subu 37.3 1.9E+02 0.0066 25.5 9.1 36 68-103 604-639 (1028)
270 3gx8_A Monothiol glutaredoxin- 37.2 62 0.0021 20.6 4.7 49 90-141 34-85 (121)
271 1exn_A 5'-exonuclease, 5'-nucl 37.2 51 0.0018 24.8 4.8 49 63-111 98-153 (290)
272 1yns_A E-1 enzyme; hydrolase f 37.1 56 0.0019 23.4 4.9 34 66-99 133-166 (261)
273 3tr6_A O-methyltransferase; ce 37.0 65 0.0022 22.1 5.2 43 68-110 102-149 (225)
274 2vup_A Glutathione peroxidase- 36.8 88 0.003 20.9 5.7 40 64-103 66-114 (190)
275 2h0a_A TTHA0807, transcription 36.7 63 0.0021 22.7 5.1 71 62-139 12-87 (276)
276 1m5w_A Pyridoxal phosphate bio 36.5 1.3E+02 0.0043 22.2 10.4 72 66-140 114-196 (243)
277 1zun_A Sulfate adenylyltransfe 36.5 1.4E+02 0.0047 22.6 9.4 74 63-138 31-111 (325)
278 2eja_A URO-D, UPD, uroporphyri 36.5 1.3E+02 0.0045 22.4 7.2 64 42-109 195-260 (338)
279 3krb_A Aldose reductase; ssgci 36.5 1.3E+02 0.0046 22.5 7.4 66 66-137 159-225 (334)
280 3gk0_A PNP synthase, pyridoxin 36.5 1.3E+02 0.0046 22.5 9.8 71 66-139 142-223 (278)
281 3cmi_A Peroxiredoxin HYR1; thi 36.2 89 0.003 20.4 6.2 40 64-103 49-97 (171)
282 3mfq_A TROA, high-affinity zin 36.1 50 0.0017 24.4 4.6 42 93-137 204-245 (282)
283 3o6c_A PNP synthase, pyridoxin 36.1 1.3E+02 0.0045 22.3 9.5 41 66-107 111-151 (260)
284 3gyb_A Transcriptional regulat 36.0 95 0.0033 21.8 6.1 66 63-139 19-88 (280)
285 2a0u_A Initiation factor 2B; S 36.0 1.6E+02 0.0053 23.1 8.1 77 40-138 211-298 (383)
286 2ipq_X Hypothetical protein ST 36.0 12 0.00042 25.1 1.1 72 56-132 7-82 (135)
287 1mzw_B U4/U6 snRNP 60KDA prote 36.0 19 0.00066 17.8 1.5 28 71-98 2-29 (31)
288 3lkv_A Uncharacterized conserv 35.9 1.3E+02 0.0043 22.0 8.5 69 68-138 158-228 (302)
289 3b3e_A YVGN protein; aldo-keto 35.7 1.2E+02 0.0043 22.6 6.8 16 121-136 208-223 (310)
290 3up8_A Putative 2,5-diketo-D-g 35.6 1.3E+02 0.0046 22.2 8.1 46 89-136 161-206 (298)
291 2hsg_A Glucose-resistance amyl 35.6 1.3E+02 0.0043 21.9 7.6 71 63-139 74-148 (332)
292 3o3m_B Beta subunit 2-hydroxya 35.6 1.2E+02 0.004 23.5 6.8 118 7-139 230-352 (385)
293 1tjy_A Sugar transport protein 35.5 1.3E+02 0.0043 21.9 9.3 71 63-138 17-93 (316)
294 3n6q_A YGHZ aldo-keto reductas 35.4 1.3E+02 0.0045 22.6 7.0 30 107-136 192-222 (346)
295 2rbk_A Putative uncharacterize 35.3 52 0.0018 23.3 4.5 28 73-101 30-57 (261)
296 1xvi_A MPGP, YEDP, putative ma 35.3 40 0.0014 24.4 3.9 29 75-103 38-66 (275)
297 1t9k_A Probable methylthioribo 35.2 1.5E+02 0.0052 22.8 7.8 77 40-138 182-269 (347)
298 1rlg_A 50S ribosomal protein L 35.2 45 0.0015 21.3 3.7 41 95-137 37-77 (119)
299 3ln3_A Dihydrodiol dehydrogena 35.2 1.2E+02 0.0041 22.6 6.7 51 85-137 166-218 (324)
300 3qe9_Y Exonuclease 1; exonucle 35.1 52 0.0018 25.4 4.7 32 68-99 130-161 (352)
301 1rq8_A Conserved hypothetical 35.1 55 0.0019 20.8 4.0 67 73-142 8-82 (104)
302 1rxw_A Flap structure-specific 35.0 54 0.0018 24.9 4.7 42 67-109 130-171 (336)
303 3g40_A Na-K-CL cotransporter; 34.9 1.5E+02 0.005 22.5 10.9 71 68-138 68-146 (294)
304 3qc0_A Sugar isomerase; TIM ba 34.8 85 0.0029 22.1 5.6 45 65-109 44-104 (275)
305 3ixz_A Potassium-transporting 34.7 2.4E+02 0.0082 24.9 9.7 37 66-102 607-643 (1034)
306 2l69_A Rossmann 2X3 fold prote 34.6 86 0.003 19.7 7.6 14 123-136 94-107 (134)
307 3ed5_A YFNB; APC60080, bacillu 34.5 1E+02 0.0035 20.6 6.5 63 67-131 107-174 (238)
308 3erp_A Putative oxidoreductase 34.2 13 0.00044 28.5 1.0 31 106-136 212-242 (353)
309 1wik_A Thioredoxin-like protei 34.0 52 0.0018 20.2 3.8 49 90-141 33-81 (109)
310 2b30_A Pvivax hypothetical pro 33.7 90 0.0031 22.9 5.7 27 75-101 57-85 (301)
311 1zuw_A Glutamate racemase 1; ( 33.4 1.4E+02 0.0048 21.8 7.0 58 42-102 31-91 (272)
312 3op1_A Macrolide-efflux protei 33.4 33 0.0011 26.1 3.2 49 65-113 78-134 (308)
313 3h5t_A Transcriptional regulat 33.3 1.3E+02 0.0045 22.2 6.7 69 62-138 86-159 (366)
314 3gi1_A LBP, laminin-binding pr 33.3 65 0.0022 23.9 4.8 40 68-107 217-257 (286)
315 2dri_A D-ribose-binding protei 33.1 1.2E+02 0.0043 21.1 8.7 72 62-138 14-90 (271)
316 3kws_A Putative sugar isomeras 33.1 1.3E+02 0.0045 21.4 7.4 44 66-109 64-125 (287)
317 3lor_A Thiol-disulfide isomera 33.1 94 0.0032 19.7 6.6 44 62-105 47-97 (160)
318 2yvk_A Methylthioribose-1-phos 33.0 74 0.0025 24.9 5.2 64 66-138 220-294 (374)
319 2o1e_A YCDH; alpha-beta protei 32.9 1.3E+02 0.0043 22.6 6.5 15 93-107 200-214 (312)
320 2iks_A DNA-binding transcripti 32.8 1.3E+02 0.0045 21.3 8.5 72 62-139 33-109 (293)
321 1xvl_A Mn transporter, MNTC pr 32.8 1.6E+02 0.0054 22.2 9.0 69 64-137 182-260 (321)
322 1jo0_A Hypothetical protein HI 32.7 66 0.0022 20.1 4.1 53 87-142 28-83 (98)
323 2dwu_A Glutamate racemase; iso 32.4 1.4E+02 0.0048 21.8 6.5 58 42-102 35-94 (276)
324 2avd_A Catechol-O-methyltransf 32.3 1.2E+02 0.0041 20.7 6.0 41 70-110 109-154 (229)
325 3cs3_A Sugar-binding transcrip 32.2 82 0.0028 22.2 5.2 66 63-138 22-88 (277)
326 3lwa_A Secreted thiol-disulfid 31.7 1.1E+02 0.0038 20.1 5.9 42 62-103 75-124 (183)
327 2ywi_A Hypothetical conserved 31.7 1E+02 0.0036 20.4 5.4 41 63-103 63-111 (196)
328 2yxb_A Coenzyme B12-dependent 31.6 1.2E+02 0.004 20.3 7.5 57 73-130 40-97 (161)
329 3izc_H 60S ribosomal protein R 31.5 81 0.0028 23.4 4.9 54 81-138 129-182 (256)
330 4gxw_A Adenosine deaminase; am 31.2 1.3E+02 0.0044 23.4 6.4 62 74-140 205-269 (380)
331 2gmw_A D,D-heptose 1,7-bisphos 31.1 76 0.0026 21.7 4.7 43 65-107 52-111 (211)
332 3h7u_A Aldo-keto reductase; st 31.1 1.3E+02 0.0044 22.6 6.3 67 65-137 160-227 (335)
333 1b73_A Glutamate racemase; iso 31.0 1.5E+02 0.005 21.3 6.8 60 40-102 26-87 (254)
334 2fpr_A Histidine biosynthesis 30.8 67 0.0023 21.4 4.2 45 64-108 43-104 (176)
335 4a5z_A MITD1, MIT domain-conta 30.7 67 0.0023 22.2 4.1 26 63-88 85-110 (163)
336 3zvl_A Bifunctional polynucleo 30.7 1E+02 0.0034 24.0 5.7 67 63-130 87-167 (416)
337 3u26_A PF00702 domain protein; 30.7 91 0.0031 20.9 5.0 63 67-131 104-170 (234)
338 3n75_A LDC, lysine decarboxyla 30.6 1.8E+02 0.0062 24.7 7.6 72 61-139 12-85 (715)
339 1toa_A Tromp-1, protein (perip 30.5 1.7E+02 0.0058 21.9 9.6 13 64-76 175-187 (313)
340 2qu7_A Putative transcriptiona 30.5 1.4E+02 0.0049 21.0 7.1 66 67-139 140-225 (288)
341 1xvw_A Hypothetical protein RV 30.4 31 0.0011 22.3 2.4 45 63-107 54-98 (160)
342 1n3y_A Integrin alpha-X; alpha 30.4 1.1E+02 0.0037 20.4 5.3 41 72-112 133-180 (198)
343 3u5r_E Uncharacterized protein 30.3 73 0.0025 22.1 4.5 41 63-103 76-124 (218)
344 1gud_A ALBP, D-allose-binding 30.3 1.5E+02 0.005 21.0 9.0 72 62-138 14-92 (288)
345 1dbq_A Purine repressor; trans 30.2 1.4E+02 0.0049 20.9 10.0 71 62-139 20-96 (289)
346 3v0s_A Perakine reductase; AKR 30.0 1.6E+02 0.0054 22.1 6.6 44 91-136 161-204 (337)
347 3tfw_A Putative O-methyltransf 29.9 73 0.0025 22.6 4.5 44 68-111 101-146 (248)
348 1vb5_A Translation initiation 29.9 1.1E+02 0.0037 22.6 5.6 69 69-142 150-223 (276)
349 2wf7_A Beta-PGM, beta-phosphog 29.7 72 0.0025 21.2 4.3 62 68-132 96-161 (221)
350 3buv_A 3-OXO-5-beta-steroid 4- 29.7 1.7E+02 0.0059 21.7 6.9 66 66-137 152-220 (326)
351 3ocu_A Lipoprotein E; hydrolas 29.6 79 0.0027 23.4 4.7 43 67-109 105-156 (262)
352 3c3k_A Alanine racemase; struc 29.5 1.5E+02 0.0051 20.9 9.5 70 62-139 21-95 (285)
353 2fea_A 2-hydroxy-3-keto-5-meth 29.5 53 0.0018 22.8 3.7 45 66-110 80-125 (236)
354 3pct_A Class C acid phosphatas 29.4 91 0.0031 23.0 5.0 43 67-109 105-156 (260)
355 3op6_A Uncharacterized protein 29.4 36 0.0012 22.6 2.6 35 67-101 3-37 (152)
356 1xzo_A BSSCO, hypothetical pro 29.3 1.2E+02 0.004 19.6 5.3 40 65-104 53-98 (174)
357 1wr8_A Phosphoglycolate phosph 28.8 89 0.003 21.6 4.8 30 74-103 31-60 (231)
358 2do5_A Splicing factor 3B subu 28.8 12 0.0004 20.8 -0.0 25 69-96 14-38 (58)
359 3to5_A CHEY homolog; alpha(5)b 28.8 1.2E+02 0.0041 19.5 5.6 47 68-115 76-122 (134)
360 3zy2_A Putative GDP-fucose pro 28.7 69 0.0024 25.0 4.3 42 92-137 270-311 (362)
361 4ap9_A Phosphoserine phosphata 28.7 30 0.001 22.8 2.1 39 66-105 82-120 (201)
362 1h1j_S THO1 protein; SAP domai 28.4 65 0.0022 17.6 3.1 30 67-99 9-38 (51)
363 3i28_A Epoxide hydrolase 2; ar 28.4 1.5E+02 0.005 22.7 6.4 64 67-131 104-175 (555)
364 1ass_A Thermosome; chaperonin, 28.4 1.1E+02 0.0038 20.5 5.0 39 68-106 61-99 (159)
365 3kij_A Probable glutathione pe 28.4 97 0.0033 20.5 4.7 42 63-104 55-105 (180)
366 1w5q_A Delta-aminolevulinic ac 28.3 39 0.0013 26.1 2.8 73 13-88 13-88 (337)
367 4f40_A Prostaglandin F2-alpha 28.3 1.7E+02 0.006 21.3 7.1 29 107-137 174-202 (288)
368 3btv_A Galactose/lactose metab 28.3 1.6E+02 0.0055 22.9 6.6 64 70-135 80-151 (438)
369 1we0_A Alkyl hydroperoxide red 28.3 1.1E+02 0.0037 20.3 5.0 37 64-100 50-86 (187)
370 3n28_A Phosphoserine phosphata 28.3 68 0.0023 23.8 4.2 27 78-104 69-95 (335)
371 3h7r_A Aldo-keto reductase; st 28.2 1.6E+02 0.0053 22.2 6.3 51 85-137 173-223 (331)
372 2x0k_A Riboflavin biosynthesis 28.2 39 0.0013 26.0 2.9 71 67-138 73-154 (338)
373 1gve_A Aflatoxin B1 aldehyde r 28.2 1.4E+02 0.0047 22.2 5.9 16 121-136 178-193 (327)
374 3iz5_f 60S ribosomal protein L 28.1 1.2E+02 0.004 19.3 5.4 48 84-136 27-74 (112)
375 3epr_A Hydrolase, haloacid deh 28.1 1.4E+02 0.0047 21.0 5.8 31 73-103 31-64 (264)
376 1ynp_A Oxidoreductase, AKR11C1 28.1 1.8E+02 0.0063 21.5 7.3 15 122-136 202-216 (317)
377 1qwk_A Aldose reductase, aldo- 28.0 1.8E+02 0.0061 21.6 6.6 50 86-137 153-202 (317)
378 3g85_A Transcriptional regulat 27.9 67 0.0023 22.7 4.0 71 63-139 26-100 (289)
379 4gqa_A NAD binding oxidoreduct 27.9 1.7E+02 0.0057 22.4 6.6 63 70-135 87-152 (412)
380 1qyi_A ZR25, hypothetical prot 27.8 74 0.0025 24.8 4.5 39 64-102 216-254 (384)
381 3a11_A Translation initiation 27.7 29 0.001 26.7 2.1 64 69-138 182-251 (338)
382 1vbj_A Prostaglandin F synthas 27.6 1.7E+02 0.006 21.3 6.4 16 121-136 177-192 (281)
383 3miz_A Putative transcriptiona 27.5 47 0.0016 23.9 3.1 66 66-138 31-100 (301)
384 2gs3_A PHGPX, GPX-4, phospholi 27.4 1.4E+02 0.0047 19.8 5.5 44 64-107 67-118 (185)
385 2hdo_A Phosphoglycolate phosph 27.4 40 0.0014 22.6 2.6 62 68-131 88-153 (209)
386 3eyt_A Uncharacterized protein 27.4 76 0.0026 20.1 3.9 40 65-104 48-94 (158)
387 1mi3_A Xylose reductase, XR; a 27.4 1.9E+02 0.0065 21.4 7.7 51 85-137 168-218 (322)
388 4hde_A SCO1/SENC family lipopr 27.3 1.1E+02 0.0036 20.3 4.8 43 63-105 50-98 (170)
389 3tqi_A GMP synthase [glutamine 27.3 1.8E+02 0.0063 23.5 6.9 76 62-139 215-294 (527)
390 3u3x_A Oxidoreductase; structu 27.3 1.9E+02 0.0064 21.8 6.6 64 70-135 79-144 (361)
391 2yxb_A Coenzyme B12-dependent 27.2 1.3E+02 0.0046 20.0 5.2 43 66-108 84-128 (161)
392 1qg8_A Protein (spore coat pol 27.2 1.5E+02 0.0053 20.3 6.2 38 62-100 14-51 (255)
393 2vo9_A EAD500, L-alanyl-D-glut 27.0 75 0.0026 22.0 4.0 35 64-98 37-72 (179)
394 3hh8_A Metal ABC transporter s 26.8 1.1E+02 0.0037 22.8 5.1 38 68-105 221-259 (294)
395 1r3s_A URO-D, uroporphyrinogen 26.6 2.1E+02 0.0072 21.7 7.6 63 42-108 213-283 (367)
396 3l5k_A Protein GS1, haloacid d 26.6 70 0.0024 22.0 3.8 65 67-132 116-187 (250)
397 2qul_A D-tagatose 3-epimerase; 26.6 1.7E+02 0.0059 20.6 10.0 56 58-113 125-188 (290)
398 1mzr_A 2,5-diketo-D-gluconate 26.5 2E+02 0.0067 21.3 7.1 46 90-137 163-208 (296)
399 1vlj_A NADH-dependent butanol 26.4 2.2E+02 0.0077 21.9 7.2 66 68-134 31-105 (407)
400 2wzm_A Aldo-keto reductase; ox 26.3 1.9E+02 0.0065 21.1 7.2 16 121-136 180-195 (283)
401 1zrj_A E1B-55KDA-associated pr 26.3 78 0.0027 17.3 3.1 30 67-99 14-43 (50)
402 4exq_A UPD, URO-D, uroporphyri 26.2 1.2E+02 0.0041 23.3 5.4 63 42-108 213-280 (368)
403 3r8s_O 50S ribosomal protein L 26.1 44 0.0015 21.6 2.4 40 93-133 77-116 (116)
404 3ezx_A MMCP 1, monomethylamine 26.1 1.4E+02 0.0047 21.1 5.3 60 71-131 112-174 (215)
405 3qy7_A Tyrosine-protein phosph 26.0 63 0.0021 23.7 3.6 78 61-138 52-138 (262)
406 2obi_A PHGPX, GPX-4, phospholi 26.0 1.4E+02 0.0047 19.7 5.2 44 64-107 65-116 (183)
407 3n2t_A Putative oxidoreductase 25.9 1.5E+02 0.0052 22.3 5.9 17 120-136 208-224 (348)
408 3glv_A Lipopolysaccharide core 25.8 1.4E+02 0.0048 19.4 5.3 55 75-135 60-115 (143)
409 3cyv_A URO-D, UPD, uroporphyri 25.7 98 0.0033 23.4 4.8 63 42-108 203-270 (354)
410 1rku_A Homoserine kinase; phos 25.7 1.1E+02 0.0037 20.3 4.6 39 67-106 73-111 (206)
411 3kux_A Putative oxidoreductase 25.7 1.9E+02 0.0065 21.5 6.4 63 70-135 58-123 (352)
412 1ws6_A Methyltransferase; stru 25.6 63 0.0021 20.8 3.3 44 68-111 76-120 (171)
413 1zcc_A Glycerophosphodiester p 25.6 1.2E+02 0.0042 21.6 5.1 41 69-109 184-224 (248)
414 3vni_A Xylose isomerase domain 25.6 1.8E+02 0.0062 20.6 7.7 55 59-113 125-187 (294)
415 3pdw_A Uncharacterized hydrola 25.6 1.7E+02 0.0059 20.3 8.1 36 68-103 27-65 (266)
416 2zkr_f 60S ribosomal protein L 25.6 78 0.0027 23.6 4.0 42 95-138 145-186 (266)
417 2pw9_A Putative formate dehydr 25.6 92 0.0031 23.1 4.4 29 84-112 198-226 (268)
418 3jvd_A Transcriptional regulat 25.4 2E+02 0.0068 21.0 8.9 67 67-140 192-270 (333)
419 4gac_A Alcohol dehydrogenase [ 25.4 2E+02 0.007 21.1 6.7 51 85-137 160-210 (324)
420 1gml_A T-complex protein 1 sub 25.4 1.3E+02 0.0046 20.5 5.0 40 67-106 66-105 (178)
421 2bmx_A Alkyl hydroperoxidase C 25.3 1.1E+02 0.0038 20.5 4.6 37 64-100 64-100 (195)
422 1req_B Methylmalonyl-COA mutas 25.3 1.3E+02 0.0043 25.4 5.6 59 65-131 574-635 (637)
423 2o1e_A YCDH; alpha-beta protei 25.2 54 0.0018 24.7 3.1 41 68-108 228-269 (312)
424 2i3y_A Epididymal secretory gl 25.1 1.8E+02 0.0061 20.3 7.1 43 65-107 74-130 (215)
425 3ec7_A Putative dehydrogenase; 25.0 1.1E+02 0.0037 23.1 4.9 61 70-133 78-141 (357)
426 2p31_A CL683, glutathione pero 24.9 1.4E+02 0.0048 19.7 5.1 41 64-104 67-116 (181)
427 1prx_A HORF6; peroxiredoxin, h 24.8 1.5E+02 0.005 20.8 5.3 36 64-99 50-85 (224)
428 3gl9_A Response regulator; bet 24.7 1.2E+02 0.0041 18.2 5.9 38 78-116 75-112 (122)
429 3e82_A Putative oxidoreductase 24.6 2.1E+02 0.0071 21.5 6.5 63 70-135 58-123 (364)
430 2h3h_A Sugar ABC transporter, 24.6 1.9E+02 0.0067 20.6 9.4 72 63-139 14-91 (313)
431 3h8q_A Thioredoxin reductase 3 24.6 1.3E+02 0.0044 18.5 7.8 11 93-103 33-43 (114)
432 1sui_A Caffeoyl-COA O-methyltr 24.6 1.9E+02 0.0065 20.4 7.6 62 69-131 118-185 (247)
433 2bgs_A Aldose reductase; holoe 24.5 2.3E+02 0.0079 21.4 7.4 67 65-137 172-239 (344)
434 3duw_A OMT, O-methyltransferas 24.4 1.7E+02 0.0058 19.8 7.2 43 68-110 96-142 (223)
435 2c0d_A Thioredoxin peroxidase 24.4 98 0.0033 21.7 4.3 36 65-100 76-111 (221)
436 3e18_A Oxidoreductase; dehydro 24.3 2.1E+02 0.0072 21.5 6.4 63 70-135 56-121 (359)
437 4f2d_A L-arabinose isomerase; 24.3 2.5E+02 0.0087 22.7 7.1 60 66-125 433-494 (500)
438 4had_A Probable oxidoreductase 24.3 1.3E+02 0.0045 22.3 5.2 62 70-134 77-141 (350)
439 1nfp_A LUXF gene product; flav 24.3 1.3E+02 0.0043 21.0 4.9 26 85-110 170-199 (228)
440 1uul_A Tryparedoxin peroxidase 24.1 1E+02 0.0035 20.9 4.3 37 64-100 55-91 (202)
441 3r4c_A Hydrolase, haloacid deh 24.0 1.9E+02 0.0063 20.2 6.0 65 74-142 41-120 (268)
442 1g7s_A Translation initiation 24.0 2.5E+02 0.0086 23.1 7.2 64 66-136 361-431 (594)
443 3mz0_A Inositol 2-dehydrogenas 24.0 1.1E+02 0.0038 22.8 4.7 62 70-133 57-120 (344)
444 1j93_A UROD, uroporphyrinogen 24.0 1E+02 0.0034 23.3 4.5 64 42-109 209-275 (353)
445 1w2w_B 5-methylthioribose-1-ph 24.0 50 0.0017 23.2 2.6 64 66-138 17-93 (191)
446 2bp1_A Aflatoxin B1 aldehyde r 23.9 1.8E+02 0.0061 22.1 5.9 16 121-136 211-226 (360)
447 3smv_A S-(-)-azetidine-2-carbo 23.7 1.3E+02 0.0044 20.1 4.7 44 67-111 103-148 (240)
448 1zgd_A Chalcone reductase; pol 23.7 2.2E+02 0.0076 21.0 6.5 67 65-137 148-215 (312)
449 3rxy_A NIF3 protein; structura 23.7 2.3E+02 0.008 21.2 7.2 63 73-138 214-277 (278)
450 3oqb_A Oxidoreductase; structu 23.5 1.9E+02 0.0066 21.7 6.1 61 70-133 74-137 (383)
451 2xhf_A Peroxiredoxin 5; oxidor 23.4 1.4E+02 0.0047 20.3 4.8 36 67-102 64-100 (171)
452 2pn8_A Peroxiredoxin-4; thiore 23.4 97 0.0033 21.4 4.1 37 64-100 67-103 (211)
453 2ywb_A GMP synthase [glutamine 23.4 2.3E+02 0.0077 22.7 6.7 72 63-138 195-270 (503)
454 3qvq_A Phosphodiesterase OLEI0 23.3 1.7E+02 0.0057 20.9 5.4 39 70-109 201-239 (252)
455 3qpm_A Peroxiredoxin; oxidored 23.2 1.3E+02 0.0044 21.4 4.8 37 64-100 96-132 (240)
456 1xpj_A Hypothetical protein; s 23.1 1.5E+02 0.005 18.6 5.5 22 70-91 31-52 (126)
457 2zos_A MPGP, mannosyl-3-phosph 23.1 61 0.0021 22.9 3.0 30 74-103 28-57 (249)
458 3umc_A Haloacid dehalogenase; 23.1 84 0.0029 21.5 3.7 61 69-131 126-188 (254)
459 3o3r_A Aldo-keto reductase fam 22.9 2.3E+02 0.0079 20.9 6.8 51 85-137 159-211 (316)
460 2vk2_A YTFQ, ABC transporter p 22.7 2.1E+02 0.0072 20.3 9.9 72 63-139 16-92 (306)
461 2fn9_A Ribose ABC transporter, 22.6 2E+02 0.0069 20.1 10.2 72 62-138 15-91 (290)
462 1xvl_A Mn transporter, MNTC pr 22.6 1.4E+02 0.0047 22.5 5.0 38 68-105 242-280 (321)
463 3r3h_A O-methyltransferase, SA 22.6 1.8E+02 0.0062 20.5 5.5 30 81-110 113-145 (242)
464 1o2d_A Alcohol dehydrogenase, 22.6 2.6E+02 0.0088 21.3 7.2 67 66-133 27-101 (371)
465 1zof_A Alkyl hydroperoxide-red 22.5 1.2E+02 0.004 20.4 4.3 35 65-99 53-87 (198)
466 4dcc_A Putative haloacid dehal 22.5 1.5E+02 0.005 20.0 4.9 64 66-131 115-188 (229)
467 3o9z_A Lipopolysaccaride biosy 22.4 2.4E+02 0.0081 20.8 7.5 58 76-135 69-128 (312)
468 3mfq_A TROA, high-affinity zin 22.3 86 0.0029 23.1 3.7 41 67-107 200-244 (282)
469 1vd6_A Glycerophosphoryl diest 22.2 1.9E+02 0.0065 20.1 5.5 40 69-109 176-215 (224)
470 2i2x_B MTAC, methyltransferase 22.2 2.2E+02 0.0077 20.5 7.6 59 71-130 143-202 (258)
471 1lqa_A TAS protein; TIM barrel 22.1 44 0.0015 25.2 2.1 44 94-137 190-234 (346)
472 2obb_A Hypothetical protein; s 22.1 98 0.0034 20.5 3.7 31 74-104 35-68 (142)
473 1zh8_A Oxidoreductase; TM0312, 22.1 2.5E+02 0.0084 20.9 7.0 63 70-135 73-138 (340)
474 4ew6_A D-galactose-1-dehydroge 22.0 2.4E+02 0.0084 20.9 6.3 63 70-134 71-136 (330)
475 1hw6_A 2,5-diketo-D-gluconic a 21.9 2.3E+02 0.0079 20.5 7.1 16 121-136 172-187 (278)
476 2i33_A Acid phosphatase; HAD s 21.9 97 0.0033 22.4 3.9 45 66-110 104-156 (258)
477 3hcz_A Possible thiol-disulfid 21.8 1.5E+02 0.005 18.2 5.0 40 64-103 49-89 (148)
478 2b7k_A SCO1 protein; metalloch 21.8 1.9E+02 0.0065 19.5 7.6 45 63-107 59-110 (200)
479 1h4x_A SPOIIAA, anti-sigma F f 21.8 1.4E+02 0.0049 18.0 4.4 39 66-106 61-99 (117)
480 3m2t_A Probable dehydrogenase; 21.8 2.5E+02 0.0084 21.1 6.4 63 70-134 59-123 (359)
481 3kcm_A Thioredoxin family prot 21.8 1.5E+02 0.0053 18.4 4.6 42 63-104 45-88 (154)
482 3dxy_A TRNA (guanine-N(7)-)-me 21.7 1.4E+02 0.0047 20.7 4.6 42 67-108 70-112 (218)
483 3fhl_A Putative oxidoreductase 21.7 1.7E+02 0.0058 22.0 5.4 64 70-135 56-121 (362)
484 4a18_G RPL30; ribosome, eukary 21.5 1.5E+02 0.0052 18.2 5.5 47 84-135 23-69 (104)
485 1pyf_A IOLS protein; beta-alph 21.5 1.6E+02 0.0055 21.7 5.2 27 110-136 177-203 (312)
486 2nvw_A Galactose/lactose metab 21.4 2.5E+02 0.0087 22.2 6.6 63 70-134 99-170 (479)
487 3p3b_A Mandelate racemase/muco 21.4 2.2E+02 0.0074 21.9 6.0 69 65-135 240-310 (392)
488 3kws_A Putative sugar isomeras 21.4 2.2E+02 0.0076 20.1 8.4 57 57-113 137-201 (287)
489 1jfu_A Thiol:disulfide interch 21.4 1.5E+02 0.0051 19.4 4.6 41 63-103 77-119 (186)
490 3u5e_c L32, RP73, YL38, 60S ri 21.2 1.6E+02 0.0053 18.2 5.2 48 84-136 23-70 (105)
491 3i23_A Oxidoreductase, GFO/IDH 21.2 2.1E+02 0.0073 21.3 5.9 63 70-135 56-121 (349)
492 2kvu_A MKL/myocardin-like prot 21.1 1E+02 0.0035 18.4 3.1 31 66-99 29-59 (75)
493 3u0h_A Xylose isomerase domain 21.1 2.2E+02 0.0075 19.9 7.8 55 59-113 115-182 (281)
494 1u6t_A SH3 domain-binding glut 21.1 1.6E+02 0.0055 19.0 4.5 13 91-103 20-32 (121)
495 1he7_A High affinity nerve gro 21.0 48 0.0016 21.5 1.9 20 3-22 26-45 (126)
496 1qpz_A PURA, protein (purine n 21.0 2.4E+02 0.0083 20.4 9.7 70 62-138 71-146 (340)
497 1t5o_A EIF2BD, translation ini 21.0 1.2E+02 0.0041 23.4 4.4 63 66-137 193-265 (351)
498 3ll5_A Gamma-glutamyl kinase r 20.9 2.4E+02 0.008 20.2 6.2 69 67-137 28-103 (249)
499 1ydw_A AX110P-like protein; st 20.9 2.6E+02 0.009 20.8 7.1 64 70-134 62-126 (362)
500 2oho_A Glutamate racemase; iso 20.9 2.4E+02 0.0083 20.4 7.4 58 42-102 40-99 (273)
No 1
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=7.3e-38 Score=259.63 Aligned_cols=138 Identities=43% Similarity=0.727 Sum_probs=127.2
Q ss_pred CCCCCceEEEEecCCCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCC---------CCChhhHHHHHHHHHHH
Q psy9352 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM---------RVGPNRWRFLQQSLADL 71 (146)
Q Consensus 1 ~~~~~~~~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~---------~~~~~r~~Fl~~sL~~L 71 (146)
|. +++++|||||+|||++|||||.+|++.+.+ |+||||+||.++..+ ..|++|.+||++||.+|
T Consensus 1 ~~-~~~~~lvWFRrDLRl~DN~AL~~A~~~~~~------vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L 73 (537)
T 3fy4_A 1 MA-TGSGSLIWFRKGLRVHDNPALEYASKGSEF------MYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDL 73 (537)
T ss_dssp ----CCEEEEEESSCCCSTTCHHHHHHHTTCSC------EEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHH
T ss_pred CC-CCCcEEEEeCCCcccchhHHHHHHHhcCCC------EEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHH
Confidence 54 446899999999999999999999987655 999999999877532 47899999999999999
Q ss_pred HHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCeeeeCC
Q psy9352 72 DQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145 (146)
Q Consensus 72 ~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~p~ 145 (146)
+++|+++|++|+|+.|++.++|++|+++++|++||+|++|+|++++||+.|++.|++.||+++++++++|++|+
T Consensus 74 ~~~L~~~G~~L~v~~G~~~~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI~~~~~~~~~L~~p~ 147 (537)
T 3fy4_A 74 DSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPA 147 (537)
T ss_dssp HHHHHHTTCCCEEEESCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEEECCCCSSSSCHH
T ss_pred HHHHHHcCCceEEEECCHHHHHHHHHHHcCCCEEEEeccccHHHHHHHHHHHHHHHHcCCeEEEecCCEEEchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=100.00 E-value=6.2e-37 Score=254.25 Aligned_cols=137 Identities=37% Similarity=0.637 Sum_probs=129.5
Q ss_pred ceEEEEecCCCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhc---CCeE
Q psy9352 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRAL---GSRL 82 (146)
Q Consensus 6 ~~~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~---g~~L 82 (146)
+++|||||+|||++||+||.+|++.+. .+.||+||||+||.+++.+..|++|++||++||.+|+++|+++ |++|
T Consensus 4 ~~~lvWFRrDLRl~DN~AL~~A~~~~~---~g~~vl~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~~~~G~~L 80 (538)
T 3tvs_A 4 GANVIWFRHGLRLHDNPALLAALADKD---QGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRL 80 (538)
T ss_dssp CEEEEEESSCCCSSSCHHHHTTTGGGT---TTCBCCEEEEECSSSSCSTTCCHHHHHHHHHHHHHHHHHGGGSCSSSSCC
T ss_pred CcEEEEeCCCcchhhhHHHHHHHHhCC---CCCCEEEEEecChhhhccCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeE
Confidence 478999999999999999999998764 1345999999999999877789999999999999999999999 9999
Q ss_pred EEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCeeeeCC
Q psy9352 83 YVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145 (146)
Q Consensus 83 ~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~p~ 145 (146)
+|++|++.++|++|+++++|++||+|++|++++++||+.|++.|++.||.++++++++|++|+
T Consensus 81 ~v~~G~~~~vl~~L~~~~~a~~V~~n~~~~~~~~~RD~~v~~~l~~~gi~~~~~~~~~l~~p~ 143 (538)
T 3tvs_A 81 LVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQ 143 (538)
T ss_dssp EEEESCHHHHHHHHHHHHCEEEECEECCCCGGGHHHHHHHHHHHHHSSCCCCEECCSSSSCTT
T ss_pred EEEeCCHHHHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHHHHHhCCceEEEecCCEEEChh
Confidence 999999999999999999999999999999999999999999999999999999999999996
No 3
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=3e-34 Score=236.04 Aligned_cols=135 Identities=25% Similarity=0.406 Sum_probs=126.9
Q ss_pred ceEEEEecCCCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCC-----CCCChhhHHHHHHHHHHHHHHHHhcCC
Q psy9352 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKF-----MRVGPNRWRFLQQSLADLDQKFRALGS 80 (146)
Q Consensus 6 ~~~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~-----~~~~~~r~~Fl~~sL~~L~~~L~~~g~ 80 (146)
+++|||||+|||++||+||.+|++.+.+ ++||||+||.++.. ...+++|.+|+++||.+|+++|+++|+
T Consensus 6 ~~~l~WfrrDLRl~DN~aL~~A~~~~~~------v~~vfi~dp~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~ 79 (489)
T 1np7_A 6 PTVLVWFRNDLRLHDHEPLHRALKSGLA------ITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGN 79 (489)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHTTSE------EEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCCCcchHHHHHHHHhcCCC------EEEEEEECchhhcccccccCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4789999999999999999999987655 99999999987763 457999999999999999999999999
Q ss_pred eEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCeeeeCCC
Q psy9352 81 RLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTNL 146 (146)
Q Consensus 81 ~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~p~~ 146 (146)
+|+++.|++.++|++|+++++|++|+++++|+|++++||+.|++.|++.||+++++++++|++|++
T Consensus 80 ~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~ 145 (489)
T 1np7_A 80 KLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPED 145 (489)
T ss_dssp CEEEEESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGG
T ss_pred cEEEEECCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHhcCCeEEEecCCeeeCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999863
No 4
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=100.00 E-value=1.3e-34 Score=240.69 Aligned_cols=139 Identities=54% Similarity=0.988 Sum_probs=128.5
Q ss_pred eEEEEecCCCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEE
Q psy9352 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQ 86 (146)
Q Consensus 7 ~~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~ 86 (146)
.+|||||+|||++||+||.+|++.+.+.+.+.||+||||+||.++.....+++|++|+++||.+|+++|+++|++|+++.
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~ 109 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVR 109 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTSCHHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcccCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 55999999999999999999987543212366799999999998876678999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCeeeeCC
Q psy9352 87 GKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145 (146)
Q Consensus 87 g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~p~ 145 (146)
|++.++|++|+++++|++|+++++|+|++++||+.|++.|++.||+++++++++|++|+
T Consensus 110 g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~~~~~gi~~~~~~~~~l~~p~ 168 (543)
T 2wq7_A 110 GKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPE 168 (543)
T ss_dssp SCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHHHHHHHHHcCCEEEEecCCEEECcc
Confidence 99999999999999999999999999999999999999999999999999999999875
No 5
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00 E-value=3.4e-34 Score=235.48 Aligned_cols=134 Identities=31% Similarity=0.557 Sum_probs=127.1
Q ss_pred eEEEEecCCCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEE
Q psy9352 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQ 86 (146)
Q Consensus 7 ~~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~ 86 (146)
++|+|||+|||++||+||.+|++.+.+ |+||||+||.+++....|++|++|+++||.+|+++|+++|++|+++.
T Consensus 4 ~~l~WfrrDLRl~Dn~aL~~A~~~~~~------v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~ 77 (484)
T 1owl_A 4 PILFWHRRDLRLSDNIGLAAARAQSAQ------LIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQ 77 (484)
T ss_dssp CEEEEESSCCCSSSCHHHHHHHHHCSC------EEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred cEEEEECCCCCcchhHHHHHHHhcCCC------EEEEEEEcchhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 579999999999999999999975445 99999999998876678999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCeeeeCCC
Q psy9352 87 GKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTNL 146 (146)
Q Consensus 87 g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~p~~ 146 (146)
|++.++|++|+++++|++|++|++++|++++||+.|++.|++.||+++++++++|++|++
T Consensus 78 g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~ 137 (484)
T 1owl_A 78 GDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQ 137 (484)
T ss_dssp SCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEECCSSSSCTTT
T ss_pred CCHHHHHHHHHHHcCCCEEEEeccCChhHHHHHHHHHHHHHHcCcEEEEecCCEEEchhh
Confidence 999999999999999999999999999999999999999999999999999999999874
No 6
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.6e-34 Score=234.91 Aligned_cols=130 Identities=25% Similarity=0.377 Sum_probs=124.1
Q ss_pred EEEEecCCCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCCC-CChhhHHHHHHHHHHHHHHHHhcCCeEEEEE
Q psy9352 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMR-VGPNRWRFLQQSLADLDQKFRALGSRLYVVQ 86 (146)
Q Consensus 8 ~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~~-~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~ 86 (146)
+|||||+|||++|||||.+|++.+.+ |+||||+||.+++... .|++|.+|+++||.+|+++|+++|++|+++.
T Consensus 3 ~l~WfrrDLRl~DN~aL~~A~~~~~~------v~~vfi~dp~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~ 76 (440)
T 2e0i_A 3 CIFIFRRDLRLEDNTGLNYALSECDR------VIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDELRKKGSRLNVFF 76 (440)
T ss_dssp EEEEESSCCCSSSCHHHHHHHHHSSE------EEEEEEECHHHHSSCTTCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred EEEEeCCCCccchhHHHHHHHhcCCC------EEEEEEeChhhhccCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 79999999999999999999986655 9999999999887655 8999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCeeeeCC
Q psy9352 87 GKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145 (146)
Q Consensus 87 g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~p~ 145 (146)
|++.++|++|++ +|++|++|++++|++++||+.|++.|++.||+++++++++|++|+
T Consensus 77 g~~~~~l~~l~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~ 133 (440)
T 2e0i_A 77 GEAEKVVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKAYEDYLLTPKS 133 (440)
T ss_dssp SCHHHHHHHHCT--TCSEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGG
T ss_pred CCHHHHHHHHHc--CCCEEEEecccChHHHHHHHHHHHHHHHcCceEEEecCCEEEccc
Confidence 999999999999 999999999999999999999999999999999999999999986
No 7
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=100.00 E-value=1.2e-33 Score=233.16 Aligned_cols=136 Identities=21% Similarity=0.217 Sum_probs=120.2
Q ss_pred ceEEEEecCCCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEE
Q psy9352 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVV 85 (146)
Q Consensus 6 ~~~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~ 85 (146)
+++|||||+|||++|||||.+|++.+++ .+.||+||||+||.++. ...|++|.+||++||.+|+++|+++|++|+|+
T Consensus 38 ~~vlvWFRrDLRl~DN~AL~~A~~~a~~--~~~pVl~vfildp~~~~-~~~~~~r~~FL~~sL~dL~~~L~~lG~~L~v~ 114 (506)
T 3umv_A 38 GPVVYWMLRDQRLADNWALLHAAGLAAA--SASPLAVAFALFPRPFL-LSARRRQLGFLLRGLRRLAADAAARHLPFFLF 114 (506)
T ss_dssp SCEEEEESSCCCSTTCHHHHHHHHHHHH--HTCCEEEEEECCCTTCG-GGCCHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEeCCCcchhhcHHHHHHHHhhhh--cCCCEEEEEeccchhhc-cCCCHHHHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 4789999999999999999999974321 12349999999998553 45789999999999999999999999999999
Q ss_pred ECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHH--hCCCeEEEecCCeeeeCC
Q psy9352 86 QGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK--EYKVKVEQHVSHTLYNTN 145 (146)
Q Consensus 86 ~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~--~~~i~~~~~~~~~L~~p~ 145 (146)
.|+|.++ ++|+++++|++||++.++...+++||+.|++.|+ +.||+++++++++|++|+
T Consensus 115 ~G~p~~v-~~L~~~~~a~~V~~d~ep~~~~r~rD~~V~~~l~~~~~gi~~~~~~~~~l~~p~ 175 (506)
T 3umv_A 115 TGGPAEI-PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVW 175 (506)
T ss_dssp SSCTTHH-HHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTSEEEEECCSCSSCHH
T ss_pred ecChHHH-HHHHHhcCCCEEEeccChhHHHHHHHHHHHHHHhhccCCeEEEEeCCcEEECcc
Confidence 9999999 9999999999999977666656688999999997 689999999999999984
No 8
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=100.00 E-value=3e-33 Score=231.75 Aligned_cols=135 Identities=27% Similarity=0.424 Sum_probs=126.2
Q ss_pred ceEEEEecCCCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCC------CCCChhhHHHHHHHHHHHHHHHHhcC
Q psy9352 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKF------MRVGPNRWRFLQQSLADLDQKFRALG 79 (146)
Q Consensus 6 ~~~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~------~~~~~~r~~Fl~~sL~~L~~~L~~~g 79 (146)
+++|+|||+|||++||+||.+|++.+.+ |+||||+||.++.. ...+++|++|+++||.+|+++|+++|
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~~~~~------v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G 113 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSSSDT------ILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRG 113 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHTCSE------EEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCcCcchhHHHHHHHhcCCc------EEEEEEECchhhcccccccCCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999987655 99999999987753 35789999999999999999999999
Q ss_pred CeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCC--CeEEEecCCeeeeCCC
Q psy9352 80 SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK--VKVEQHVSHTLYNTNL 146 (146)
Q Consensus 80 ~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~--i~~~~~~~~~L~~p~~ 146 (146)
++|+++.|++.++|++|+++++|++|+++++|+|++++||+.|++.|++.| |+++++++++|++|++
T Consensus 114 ~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gv~i~~~~~~~~~L~~p~~ 182 (525)
T 2j4d_A 114 LNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDD 182 (525)
T ss_dssp CCCEEEESCHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHHTTCSSCEEEEECCSCSSCGGG
T ss_pred CeEEEEeCCHHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHHHhcCCceEEEEecCCEEEcccc
Confidence 999999999999999999999999999999999999999999999999999 8999999999998753
No 9
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=4.6e-34 Score=234.01 Aligned_cols=132 Identities=22% Similarity=0.304 Sum_probs=123.3
Q ss_pred eEEEEecCCCCCcCcHHHHHHHhc-CCCCCCCceEEEEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEE
Q psy9352 7 CAVHWIRKGMRLHDNPALLSAINY-KNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVV 85 (146)
Q Consensus 7 ~~l~Wfr~DLRl~DN~aL~~A~~~-~~~~~~~~~l~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~ 85 (146)
++|||||+|||++|||||.+|++. .. ||+||||+||.+++.+..|++|.+|+++||.+|+++|+++|++|+++
T Consensus 2 ~~l~WfrrDLRl~DN~aL~~A~~~~~~------~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~ 75 (471)
T 1dnp_A 2 THLVWFRQDLRLHDNLALAAACRNSSA------RVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFR 75 (471)
T ss_dssp EEEEECSSCCCSTTCHHHHHHSSSTTS------EEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEeCCCCcccchHHHHHHHhCCCC------CEEEEEEECchhhccCCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 679999999999999999999873 22 49999999998887667899999999999999999999999999999
Q ss_pred ----ECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCeeeeCCC
Q psy9352 86 ----QGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTNL 146 (146)
Q Consensus 86 ----~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~p~~ 146 (146)
.|++.++|++|+++++|++|++|++++|++++||+.|++.|++ |+++++++++|++|++
T Consensus 76 ~~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~--i~~~~~~~~~l~~~~~ 138 (471)
T 1dnp_A 76 EVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRN--VVCEGFDDSVILPPGA 138 (471)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCTT--SEEEEECCSSSSCTTS
T ss_pred EccCCCCHHHHHHHHHHHcCCCEEEEecccCchHHHHHHHHHHHhcC--cEEEEecCCEEEchhh
Confidence 8999999999999999999999999999999999999999875 9999999999999874
No 10
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=100.00 E-value=1.2e-32 Score=227.41 Aligned_cols=134 Identities=24% Similarity=0.404 Sum_probs=122.8
Q ss_pred ceEEEEecCCCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEE
Q psy9352 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVV 85 (146)
Q Consensus 6 ~~~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~ 85 (146)
+++|+|||+|||++||+||.+|++.+ + ++||||+||..+.....+..+..|+++||.+|+++|+++|++|+++
T Consensus 12 ~~~l~WfrrDLRl~DN~aL~~A~~~~-~------v~pvfi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L~~~G~~L~v~ 84 (509)
T 1u3d_A 12 GCSIVWFRRDLRVEDNPALAAAVRAG-P------VIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITK 84 (509)
T ss_dssp -CEEEEESSCCCSTTCHHHHHHHHHS-C------EEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECCCCccchhHHHHHHHhCC-C------EEEEEEECchhcccCCcchHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 46899999999999999999999863 5 9999999998876544466777799999999999999999999999
Q ss_pred E-CChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCeeeeCCC
Q psy9352 86 Q-GKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTNL 146 (146)
Q Consensus 86 ~-g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~p~~ 146 (146)
. |++.++|++|+++++|++|++|++++|++++||+.|++.|++.||+++++++++|++|++
T Consensus 85 ~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~p~~ 146 (509)
T 1u3d_A 85 RSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWE 146 (509)
T ss_dssp ECSCHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGG
T ss_pred eCCCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCcEEEEECCCEEEcCCc
Confidence 8 699999999999999999999999999999999999999999999999999999998863
No 11
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=100.00 E-value=2e-32 Score=221.61 Aligned_cols=128 Identities=30% Similarity=0.470 Sum_probs=121.0
Q ss_pred ceEEEEecCCCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEE
Q psy9352 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVV 85 (146)
Q Consensus 6 ~~~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~ 85 (146)
+++|+|||+|||++||+||.+|++.+ + |+||||+||.++. . +++|.+|+++||.+|+++|+++|++|+++
T Consensus 2 ~~~l~WfrrDlRl~Dn~aL~~A~~~~-~------v~~vfi~d~~~~~--~-~~~r~~fl~~sL~~l~~~L~~~g~~l~~~ 71 (420)
T 2j07_A 2 GPLLVWHRGDLRLHDHPALLEALARG-P------VVGLVVLDPNNLK--T-TPRRRAWFLENVRALREAYRARGGALWVL 71 (420)
T ss_dssp CCEEEEESSCCCSTTCHHHHHHHTTS-C------EEEEEEECHHHHS--S-CHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEeCCCCCccccHHHHHHHhCC-C------EEEEEEECCcccc--C-CHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 36899999999999999999998755 5 9999999998876 4 99999999999999999999999999999
Q ss_pred ECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCeeeeCCC
Q psy9352 86 QGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTNL 146 (146)
Q Consensus 86 ~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~p~~ 146 (146)
.|++.++|++|+++++|++|++|++++|++++||+.|++.| ||+++++++++|++|++
T Consensus 72 ~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l---~i~~~~~~~~~l~~~~~ 129 (420)
T 2j07_A 72 EGLPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREAL---PVPLHLLPAPHLLPPDL 129 (420)
T ss_dssp ESCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---SSCEEEECCCCSSCTTC
T ss_pred eCCHHHHHHHHHHHcCCCEEEEecccChhHHHHHHHHHHHc---CCeEEEeCCCEEEccCC
Confidence 99999999999999999999999999999999999999887 99999999999999974
No 12
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=99.97 E-value=2.5e-31 Score=218.31 Aligned_cols=131 Identities=18% Similarity=0.262 Sum_probs=117.6
Q ss_pred eEEEEecCCCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEE
Q psy9352 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQ 86 (146)
Q Consensus 7 ~~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~ 86 (146)
++|+|||+|||++||+||.+|++.+++ .+.||+||||+||.++. .+++|.+|+++||.+|+++|+++|++|+++.
T Consensus 38 ~~l~WfrrDLRl~DN~aL~~A~~~a~~--~~~~v~~vfi~dp~~~~---~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~ 112 (482)
T 2xry_A 38 PVVYWMSRDQRAEDNWALLFSRAIAKE--ANVPVVVVFCLTDEFLE---AGIRQYEFMLKGLQELEVSLSRKKIPSFFLR 112 (482)
T ss_dssp CEEEECSSCCCSSSCHHHHHHHHHHHH--HTSCEEEEEEECTTGGG---SCHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEecCCCCccccHHHHHHHHHHHH--cCCcEEEEEEeChhhhc---cCHHHHHHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 689999999999999999999864311 12249999999998764 5899999999999999999999999999999
Q ss_pred CChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCeeeeCC
Q psy9352 87 GKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145 (146)
Q Consensus 87 g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~p~ 145 (146)
|++.++|++|+++++|++|+++++++++++++++.+.+.+ ||+++++++++|++|+
T Consensus 113 g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~~~~v~~~l---gi~~~~~~~~~l~~~~ 168 (482)
T 2xry_A 113 GDPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGI---SIPFFEVDAHNVVPCW 168 (482)
T ss_dssp SCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---CSCEEEECCSSSSCHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHc---CCEEEEEeCCEEcccc
Confidence 9999999999999999999999999999998888877654 9999999999999874
No 13
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=98.99 E-value=1e-09 Score=90.46 Aligned_cols=123 Identities=11% Similarity=0.056 Sum_probs=96.3
Q ss_pred eEEEEecCCCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCc-cCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEE
Q psy9352 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHF-RKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVV 85 (146)
Q Consensus 7 ~~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~-~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~ 85 (146)
+.+.|.=.|-=-.++++|..+ ..+ ..+|+..+... ...-+..+.|..|++.||++|+++|+++|.+++++
T Consensus 16 ~~~~~ilgdQL~~~~~~~~~~-~~~--------~~~~~~~E~~~~~~~~~~h~~Ki~~l~saMr~fa~~L~~~G~~v~y~ 86 (522)
T 3zxs_A 16 TRLILVLGDQLSDDLPALRAA-DPA--------ADLVVMAEVMEEGTYVPHHPQKIALILAAMRKFARRLQERGFRVAYS 86 (522)
T ss_dssp CCEEECCTTCCCTTCHHHHTC-CTT--------TCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred heeEEeecccCCCccchhhhc-CCC--------CCEEEEEEechHhccCCcHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 468898889888888888543 111 11333333322 22235578999999999999999999999999999
Q ss_pred E-------CChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCC-eeeeCC
Q psy9352 86 Q-------GKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSH-TLYNTN 145 (146)
Q Consensus 86 ~-------g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~-~L~~p~ 145 (146)
. |++.+.|++++++.+++.|+++ +|.+.++++.|++. ||++..+++. .|++|+
T Consensus 87 ~~~~~~~~g~~~~~L~~l~~~~~~~~v~~~---~P~e~r~~~~l~~~----gi~v~~~~~~~fL~~~~ 147 (522)
T 3zxs_A 87 RLDDPDTGPSIGAELLRRAAETGAREAVAT---RPGDWRLIEALEAM----PLPVRFLPDDRFLCPAD 147 (522)
T ss_dssp CTTCTTCCSSHHHHHHHHHHHHTCCCEEEE---CCSCHHHHHHHHHS----SSCEEEECCCCSSSCHH
T ss_pred eccCccccCCHHHHHHHHHHHcCCCEEEEe---CcchHHHHHHHHHc----CCcEEEeCCCCcccCHH
Confidence 8 8999999999999999999998 66778888787744 9999999986 677664
No 14
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=96.33 E-value=0.013 Score=38.92 Aligned_cols=120 Identities=12% Similarity=0.080 Sum_probs=73.5
Q ss_pred CCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCCCCC-------hhhHHHHHHHHHHHHHHHHhcCC---eEEE
Q psy9352 15 GMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVG-------PNRWRFLQQSLADLDQKFRALGS---RLYV 84 (146)
Q Consensus 15 DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~~~~-------~~r~~Fl~~sL~~L~~~L~~~g~---~L~v 84 (146)
|.--....||..|+..+.. .+.++..+++.++........+ .....-..+.|..+.+.+++.|+ ...+
T Consensus 13 D~s~~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ 90 (146)
T 3s3t_A 13 DSSDAAQAAFTEAVNIAQR--HQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSAPNLKTEI 90 (146)
T ss_dssp CSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEE
Confidence 4444455777777764432 2445999999987543221110 11123344567777777777777 5677
Q ss_pred EECChhhHHHH-HHHHcCccEEEEeeec-ChhHH-HHHHHHHHHHHhCCCeEEEe
Q psy9352 85 VQGKPEEVFPD-IFKTWNIKLLTWEYDI-EPYAK-KRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 85 ~~g~~~~~l~~-l~~~~~~~~v~~~~~~-~~~~~-~rd~~v~~~~~~~~i~~~~~ 136 (146)
..|++.+.|.+ .+++.+++-|++...- +.... -.-....+.++..++++..+
T Consensus 91 ~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 91 SYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp EEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEE
T ss_pred ecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEe
Confidence 88999999999 9999999999997542 11111 01113445566667777654
No 15
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=96.26 E-value=0.081 Score=36.05 Aligned_cols=122 Identities=9% Similarity=-0.068 Sum_probs=74.6
Q ss_pred CCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCC--CC-----------Ch---hhHHHHHHHHHHHHHHHHhc
Q psy9352 15 GMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM--RV-----------GP---NRWRFLQQSLADLDQKFRAL 78 (146)
Q Consensus 15 DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~--~~-----------~~---~r~~Fl~~sL~~L~~~L~~~ 78 (146)
|.--....||..|+..+.. .+.++..+++.++...... .. .. ....-..+.|.++.+.++..
T Consensus 13 D~s~~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 90 (170)
T 2dum_A 13 DFSEGAYRAVEVFEKRNKM--EVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKAEEVKRA 90 (170)
T ss_dssp CSSHHHHHHHHHHHHHCCS--CCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444456788888877654 4567999999876432100 00 01 11122334566666666666
Q ss_pred CCeE----EEEECChhhHHHHHHHHcCccEEEEeeec-ChhHH-HHHHHHHHHHHhCCCeEEEecC
Q psy9352 79 GSRL----YVVQGKPEEVFPDIFKTWNIKLLTWEYDI-EPYAK-KRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 79 g~~L----~v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~~~~~-~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
|++. .+..|++.+.|.+.+++.+++.|++...- +.... -.-....+.++..++++..+..
T Consensus 91 g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~~ 156 (170)
T 2dum_A 91 FRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIKE 156 (170)
T ss_dssp TTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEECC
T ss_pred CCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEcc
Confidence 7653 56789999999999999999999987552 11110 0111344556667788887753
No 16
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=96.08 E-value=0.058 Score=35.65 Aligned_cols=115 Identities=12% Similarity=0.071 Sum_probs=69.6
Q ss_pred cCcHHHHHHHhcCCCCCCCceEEEEEEECCCc-cC-C---------CCCChhhHHHHHHHHHHHHHHHHhcCC-----eE
Q psy9352 19 HDNPALLSAINYKNEKGQNILLKPLYILDPHF-RK-F---------MRVGPNRWRFLQQSLADLDQKFRALGS-----RL 82 (146)
Q Consensus 19 ~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~-~~-~---------~~~~~~r~~Fl~~sL~~L~~~L~~~g~-----~L 82 (146)
....||..|+..+.. .+.++..+++.++.. +. . .........-..+.|..+.+.+++.|+ ..
T Consensus 14 ~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ 91 (147)
T 3hgm_A 14 GAVKALEKGVGLQQL--TGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATELGVPADKVRA 91 (147)
T ss_dssp HHHHHHHHHHHHHHH--HCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred HHHHHHHHHHHHHHh--cCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCccceEE
Confidence 345677777654332 244599999998743 10 0 001122223455677788888888885 45
Q ss_pred EEEECChhhHHHHHHHHcCccEEEEeeec-ChhHH-HHHHHHHHHHHhCCCeEEE
Q psy9352 83 YVVQGKPEEVFPDIFKTWNIKLLTWEYDI-EPYAK-KRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 83 ~v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~~~~~-~rd~~v~~~~~~~~i~~~~ 135 (146)
.+..|++.+.|.+.+++.+++-|++...- +.... -.-....+.++..++++..
T Consensus 92 ~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 92 FVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp EEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEE
T ss_pred EEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEE
Confidence 67789999999999999999999996542 11100 0011234445556676643
No 17
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=96.07 E-value=0.073 Score=35.02 Aligned_cols=113 Identities=10% Similarity=0.062 Sum_probs=69.2
Q ss_pred CcHHHHHHHhcCCCCCCCceEEEEEEECCCccCC-C--CC---ChhhHHHHHHHHHHHHHHHHhcCC-----eEEEEECC
Q psy9352 20 DNPALLSAINYKNEKGQNILLKPLYILDPHFRKF-M--RV---GPNRWRFLQQSLADLDQKFRALGS-----RLYVVQGK 88 (146)
Q Consensus 20 DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~-~--~~---~~~r~~Fl~~sL~~L~~~L~~~g~-----~L~v~~g~ 88 (146)
...||..|+..+.. .+.++..+++.++..... . .. .........+.+..+++.+++.|. ...+..|+
T Consensus 16 s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~g~ 93 (143)
T 3fdx_A 16 TERIISHVESEARI--DDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIPEDRMHFHVAEGS 93 (143)
T ss_dssp CTTHHHHHHHHHHH--HTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCCGGGEEEEEEESC
T ss_pred HHHHHHHHHHHHHh--cCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecC
Confidence 56677777654322 234599999998742210 0 00 011223455677777777777775 46788899
Q ss_pred hhhHHHHHHHHcCccEEEEeeecChhHHHH---HHHHHHHHHhCCCeEEEe
Q psy9352 89 PEEVFPDIFKTWNIKLLTWEYDIEPYAKKR---DGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 89 ~~~~l~~l~~~~~~~~v~~~~~~~~~~~~r---d~~v~~~~~~~~i~~~~~ 136 (146)
+.+.|.+.+++.+++-|++... +. ...+ -....+.++..++++..+
T Consensus 94 ~~~~I~~~a~~~~~dliV~G~~-~~-~~~~~~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 94 PKDKILALAKSLPADLVIIASH-RP-DITTYLLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp HHHHHHHHHHHTTCSEEEEESS-CT-TCCSCSSCHHHHHHHHHCSSEEEEE
T ss_pred hHHHHHHHHHHhCCCEEEEeCC-CC-CCeeeeeccHHHHHHHhCCCCEEEe
Confidence 9999999999999999999765 31 1111 112344556667777654
No 18
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=96.01 E-value=0.076 Score=35.31 Aligned_cols=122 Identities=16% Similarity=0.078 Sum_probs=69.1
Q ss_pred CCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccC-----C-C--CCChhhHHHHHHHHHHHHHHHHhcCCe---EE
Q psy9352 15 GMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK-----F-M--RVGPNRWRFLQQSLADLDQKFRALGSR---LY 83 (146)
Q Consensus 15 DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~-----~-~--~~~~~r~~Fl~~sL~~L~~~L~~~g~~---L~ 83 (146)
|.--....||..|+..+.. .+.++..+++.++.... . . ...........+....|++-.++.|++ ..
T Consensus 14 D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 91 (150)
T 3tnj_A 14 DFSSEDSQVVQKVRNLASQ--IGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGIDPAHRW 91 (150)
T ss_dssp CCSTTHHHHHHHHHHHHHH--HTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTCCGGGEE
T ss_pred CCCHHHHHHHHHHHHHHhh--cCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence 4444566788888765432 24459999999874321 0 0 011122233444444444444445654 68
Q ss_pred EEECChhhHHHHHHHHcCccEEEEeeecC-hhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 84 VVQGKPEEVFPDIFKTWNIKLLTWEYDIE-PYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 84 v~~g~~~~~l~~l~~~~~~~~v~~~~~~~-~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
+..|++.+.|.+.+++.+++.|++...-. ....-.-....+.++..++++..+..
T Consensus 92 ~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~~ 147 (150)
T 3tnj_A 92 LVWGEPREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCDVLAVRL 147 (150)
T ss_dssp EEESCHHHHHHHHHHHTTCSEEEEEEC--------CCCHHHHHHHHCSSEEEEEEC
T ss_pred EecCCHHHHHHHHHHHcCCCEEEEecCCCCCcCeEecchHHHHHHhCCCCEEEEeC
Confidence 88999999999999999999999965421 11100011234556667788876653
No 19
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=95.87 E-value=0.16 Score=34.14 Aligned_cols=122 Identities=11% Similarity=0.118 Sum_probs=74.2
Q ss_pred CCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCC-----cc-CCC--C--C-Ch-------hh---HHHHHHHHHHHHH
Q psy9352 15 GMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-----FR-KFM--R--V-GP-------NR---WRFLQQSLADLDQ 73 (146)
Q Consensus 15 DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~-----~~-~~~--~--~-~~-------~r---~~Fl~~sL~~L~~ 73 (146)
|.--....||..|++.+.. .+.++..+++.++. .. ... . . .. .. ..-..+.|.++.+
T Consensus 13 D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (162)
T 1mjh_A 13 DFSETAEIALKHVKAFKTL--KAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKMENIKK 90 (162)
T ss_dssp CSCHHHHHHHHHHHHTCCS--SCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhh--cCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444456788888887654 46679999999864 11 110 0 0 10 00 1122345666777
Q ss_pred HHHhcCCeE--EEEECChhhHHHHHHHHcCccEEEEeeec-ChhHH-HHHHHHHHHHHhCCCeEEEecC
Q psy9352 74 KFRALGSRL--YVVQGKPEEVFPDIFKTWNIKLLTWEYDI-EPYAK-KRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 74 ~L~~~g~~L--~v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~~~~~-~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
.++..|++. .+..|++.+.|.+.+++.+++.|++...- +.... -.-....+.++...+++..+..
T Consensus 91 ~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv~~ 159 (162)
T 1mjh_A 91 ELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKR 159 (162)
T ss_dssp HHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEECC
T ss_pred HHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEEeC
Confidence 777778764 56789999999999999999999986542 11100 0011334455667788887654
No 20
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=95.51 E-value=0.24 Score=33.43 Aligned_cols=116 Identities=11% Similarity=-0.048 Sum_probs=72.0
Q ss_pred CC-CCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEE----EECCh
Q psy9352 15 GM-RLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYV----VQGKP 89 (146)
Q Consensus 15 DL-Rl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v----~~g~~ 89 (146)
|. --....||..|+..+.. .+.++..+++.++... .......-..+.|.++.+.+++.|++..+ ..|+|
T Consensus 32 D~~s~~s~~al~~A~~la~~--~~a~l~llhV~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~ 105 (155)
T 3dlo_A 32 DKKSDRAERVLRFAAEEARL--RGVPVYVVHSLPGGGR----TKDEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRGKEP 105 (155)
T ss_dssp CSSSHHHHHHHHHHHHHHHH--HTCCEEEEEEECCSTT----SCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEESSSCH
T ss_pred CCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEEcCCCc----ccHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCH
Confidence 44 34445677777654322 2334999999986432 12223344566788888888888887653 34999
Q ss_pred hhHHHHHHHHcCccEEEEeeec-ChhHH-HHHHHHHHHHHhCCCeEEEe
Q psy9352 90 EEVFPDIFKTWNIKLLTWEYDI-EPYAK-KRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 90 ~~~l~~l~~~~~~~~v~~~~~~-~~~~~-~rd~~v~~~~~~~~i~~~~~ 136 (146)
.+.|.+.+++.+++.|++...- +.... -.-....+.++..+++|..+
T Consensus 106 ~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 106 PDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICI 154 (155)
T ss_dssp HHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEEe
Confidence 9999999999999999986432 11110 01113344556667777543
No 21
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=95.12 E-value=0.39 Score=31.35 Aligned_cols=120 Identities=10% Similarity=0.058 Sum_probs=67.1
Q ss_pred CCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECC--CccCCCCCChhhHHH----HHHHHHHHHHHHHhcCCe---EEEE
Q psy9352 15 GMRLHDNPALLSAINYKNEKGQNILLKPLYILDP--HFRKFMRVGPNRWRF----LQQSLADLDQKFRALGSR---LYVV 85 (146)
Q Consensus 15 DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~--~~~~~~~~~~~r~~F----l~~sL~~L~~~L~~~g~~---L~v~ 85 (146)
|.--....||..|+..+.. .+.++..+++.++ ...... .+.....+ ..++...|++-+++.|++ ..+.
T Consensus 10 D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (141)
T 1jmv_A 10 DLSEESPILLKKAVGIAKR--HDAKLSIIHVDVNFSDLYTGL-IDVNMSSMQDRISTETQKALLDLAESVDYPISEKLSG 86 (141)
T ss_dssp CCSTTHHHHHHHHHHHHHH--HTCEEEEEEEEECCGGGCCCC-EEHHHHHHTTCCCCHHHHHHHHHHHHSSSCCCCEEEE
T ss_pred cCchhhHHHHHHHHHHHHh--cCCEEEEEEEecCchhhhccc-cccchHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 4444455678777765432 2345999999843 211100 00000000 012223333334455664 4677
Q ss_pred ECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 86 QGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 86 ~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
.|++.+.|.+.+++.+++.|++....+.... .-....+.++..++++..+..
T Consensus 87 ~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-lgs~~~~vl~~~~~pVlvv~~ 138 (141)
T 1jmv_A 87 SGDLGQVLSDAIEQYDVDLLVTGHHQDFWSK-LMSSTRQVMNTIKIDMLVVPL 138 (141)
T ss_dssp EECHHHHHHHHHHHTTCCEEEEEECCCCHHH-HHHHHHHHHTTCCSEEEEEEC
T ss_pred cCCHHHHHHHHHHhcCCCEEEEeCCCchhhh-hcchHHHHHhcCCCCEEEeeC
Confidence 8999999999999999999998766222211 122344456667788877653
No 22
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=94.74 E-value=0.29 Score=31.86 Aligned_cols=88 Identities=11% Similarity=0.061 Sum_probs=58.6
Q ss_pred cCcHHHHHHHhcC-CCCCCCceEEEEEEECCCccCCCC-CC--h---hhH-HHHHHHHHHHHHHHHhcCCe--EEEEECC
Q psy9352 19 HDNPALLSAINYK-NEKGQNILLKPLYILDPHFRKFMR-VG--P---NRW-RFLQQSLADLDQKFRALGSR--LYVVQGK 88 (146)
Q Consensus 19 ~DN~aL~~A~~~~-~~~~~~~~l~~vfv~d~~~~~~~~-~~--~---~r~-~Fl~~sL~~L~~~L~~~g~~--L~v~~g~ 88 (146)
....||..|+..+ .. .+.++..+++.++....... .. . ... .-..+.|..+.+.+.+.|++ ..+..|+
T Consensus 13 ~s~~al~~a~~la~~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~g~ 90 (138)
T 3idf_A 13 ACERAAQYILDMFGKD--ADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGINPFVVIKEGE 90 (138)
T ss_dssp HHHHHHHHHHHHHTTC--TTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEESC
T ss_pred HHHHHHHHHHHHhccC--CCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEecCC
Confidence 3456788887766 43 45679999999875431100 00 0 001 23345667777777777766 5778899
Q ss_pred hhhHHHHHHHHcCccEEEEeee
Q psy9352 89 PEEVFPDIFKTWNIKLLTWEYD 110 (146)
Q Consensus 89 ~~~~l~~l~~~~~~~~v~~~~~ 110 (146)
+.+.|.+.++ +++-|++...
T Consensus 91 ~~~~I~~~a~--~~dliV~G~~ 110 (138)
T 3idf_A 91 PVEMVLEEAK--DYNLLIIGSS 110 (138)
T ss_dssp HHHHHHHHHT--TCSEEEEECC
T ss_pred hHHHHHHHHh--cCCEEEEeCC
Confidence 9999999998 8999998654
No 23
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=94.23 E-value=0.21 Score=32.61 Aligned_cols=113 Identities=12% Similarity=0.003 Sum_probs=60.2
Q ss_pred cCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCCCCChh-----hHHHHHHHHHHHHHHHHhcCC---eEEEEECChh
Q psy9352 19 HDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPN-----RWRFLQQSLADLDQKFRALGS---RLYVVQGKPE 90 (146)
Q Consensus 19 ~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~~~~~~-----r~~Fl~~sL~~L~~~L~~~g~---~L~v~~g~~~ 90 (146)
....||..|+..+.. .+.++..+++.++.........+. ...-..+.|.++.+. .|+ ...+..|++.
T Consensus 14 ~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~~~~~~~g~~~ 88 (137)
T 2z08_A 14 HARRAAEVAKAEAEA--HGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARAL---TGVPKEDALLLEGVPA 88 (137)
T ss_dssp HHHHHHHHHHHHHHH--HTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHH---HCCCGGGEEEEESSHH
T ss_pred HHHHHHHHHHHHHhh--cCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHH---cCCCccEEEEEecCHH
Confidence 344677777654322 234599999988632111000010 011122223333222 455 5678899999
Q ss_pred hHHHHHHHHcCccEEEEeeec-ChhH-HHHHHHHHHHHHhCCCeEEEe
Q psy9352 91 EVFPDIFKTWNIKLLTWEYDI-EPYA-KKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 91 ~~l~~l~~~~~~~~v~~~~~~-~~~~-~~rd~~v~~~~~~~~i~~~~~ 136 (146)
+.|.+.+++.+++.|++...- +... .-.-....+.++..++++..+
T Consensus 89 ~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 89 EAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp HHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEEe
Confidence 999999999999999996543 1111 001113444555667777654
No 24
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=94.15 E-value=0.77 Score=30.49 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=68.9
Q ss_pred cCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCCC-CCh----hhHHHHHHHHHHHHHHHHhcCC---eEEEEE-CCh
Q psy9352 19 HDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMR-VGP----NRWRFLQQSLADLDQKFRALGS---RLYVVQ-GKP 89 (146)
Q Consensus 19 ~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~~-~~~----~r~~Fl~~sL~~L~~~L~~~g~---~L~v~~-g~~ 89 (146)
....||..|+..+.. .+.++..+++.++....... ..+ ....-..+.|.++.+.+++.|+ ...+.. |+|
T Consensus 29 ~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~ 106 (156)
T 3fg9_A 29 SSERAFRYATTLAHD--YDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVNQVEPLVYEGGDV 106 (156)
T ss_dssp HHHHHHHHHHHHHHH--HTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEECSCH
T ss_pred HHHHHHHHHHHHHHh--cCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCCH
Confidence 334667777654322 23349999999875432110 111 1223344567777777777787 346778 999
Q ss_pred hhHHHHH-HHHcCccEEEEeeec-ChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 90 EEVFPDI-FKTWNIKLLTWEYDI-EPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 90 ~~~l~~l-~~~~~~~~v~~~~~~-~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
.+.|.+. +++.+++-|+....- +...+-.-....+.++..++++..+
T Consensus 107 ~~~I~~~~a~~~~~DlIV~G~~g~~~~~~~~Gs~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 107 DDVILEQVIPEFKPDLLVTGADTEFPHSKIAGAIGPRLARKAPISVIVV 155 (156)
T ss_dssp HHHHHHTHHHHHCCSEEEEETTCCCTTSSSCSCHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCccceeecchHHHHHHhCCCCEEEe
Confidence 9999998 999999999996542 1111100112344455667777543
No 25
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=94.06 E-value=0.52 Score=30.62 Aligned_cols=112 Identities=12% Similarity=0.081 Sum_probs=66.7
Q ss_pred CCCCcCcHHHHHHHhcCCCCCCCceEEEEEEE-CC--Ccc--CC--CCCC-hhhH---HHHHHHHHHHHHHH--HhcC-C
Q psy9352 15 GMRLHDNPALLSAINYKNEKGQNILLKPLYIL-DP--HFR--KF--MRVG-PNRW---RFLQQSLADLDQKF--RALG-S 80 (146)
Q Consensus 15 DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~-d~--~~~--~~--~~~~-~~r~---~Fl~~sL~~L~~~L--~~~g-~ 80 (146)
|.--....||..|+..+.. .+.++..+++. ++ ... .. .... .... .-..+.|.++ +.+ ...| +
T Consensus 12 D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~ 88 (138)
T 1q77_A 12 DAYSDCEKAITYAVNFSEK--LGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEKLTGSTEIP 88 (138)
T ss_dssp STTCCCHHHHHHHHHHHTT--TCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHHHHSCCCCC
T ss_pred cCCHhHHHHHHHHHHHHHH--cCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHHhhccCCcc
Confidence 4444566788888876543 35669999998 63 110 10 0101 1111 1122344455 442 3334 5
Q ss_pred eEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 81 RLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 81 ~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
...+..|++.+.|.+.+++.+++.|++... +. ....+.++..++++..+
T Consensus 89 ~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-g~------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 89 GVEYRIGPLSEEVKKFVEGKGYELVVWACY-PS------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp CEEEECSCHHHHHHHHHTTSCCSEEEECSC-CG------GGTHHHHHHSSSEEEEC
T ss_pred eEEEEcCCHHHHHHHHHHhcCCCEEEEeCC-CC------chHHHHHHhCCCceEee
Confidence 567788999999999999999999999643 21 23444556667777643
No 26
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=93.97 E-value=0.46 Score=35.21 Aligned_cols=109 Identities=12% Similarity=-0.005 Sum_probs=70.3
Q ss_pred CCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCe--EEEEECChhhH
Q psy9352 15 GMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSR--LYVVQGKPEEV 92 (146)
Q Consensus 15 DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~--L~v~~g~~~~~ 92 (146)
|..-....+|..|...+.. .+.++..+++.++.. -.+.+.++.+.|++.|++ ..+..|++.+.
T Consensus 178 d~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~-------------~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~ 242 (294)
T 3loq_A 178 DFSKWADRALEYAKFVVKK--TGGELHIIHVSEDGD-------------KTADLRVMEEVIGAEGIEVHVHIESGTPHKA 242 (294)
T ss_dssp CSSHHHHHHHHHHHHHHHH--HTCEEEEEEECSSSC-------------CHHHHHHHHHHHHHTTCCEEEEEECSCHHHH
T ss_pred CCCHHHHHHHHHHHHHhhh--cCCEEEEEEEccCch-------------HHHHHHHHHHHHHHcCCcEEEEEecCCHHHH
Confidence 3333445677777654322 234588999987642 124567777788888876 45667999999
Q ss_pred HHHHHHHcCccEEEEeeec-Chh-HHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 93 FPDIFKTWNIKLLTWEYDI-EPY-AKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 93 l~~l~~~~~~~~v~~~~~~-~~~-~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
|.+++++.+++-|++...- +.. ..-.-....+.+....+++..+..
T Consensus 243 I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~~ 290 (294)
T 3loq_A 243 ILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCKR 290 (294)
T ss_dssp HHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEECS
T ss_pred HHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEECC
Confidence 9999999999999986532 211 111222345566677888877653
No 27
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=93.32 E-value=0.25 Score=36.68 Aligned_cols=98 Identities=22% Similarity=0.189 Sum_probs=56.3
Q ss_pred HHHHHHHhcCCCCCCCceEEEEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEE--CC---hhhHHHHH
Q psy9352 22 PALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQ--GK---PEEVFPDI 96 (146)
Q Consensus 22 ~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~--g~---~~~~l~~l 96 (146)
.|++.|.+.+.. |++++..-+.... +..|-...+...+...+.+|++++++. |. -.+.+.++
T Consensus 19 ~al~~l~~~G~e------V~~L~~~~~~~~~-------s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~ 85 (237)
T 3rjz_A 19 YALYWAIKNRFS------VKFLVTMVSENEE-------SYMYHTINANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRV 85 (237)
T ss_dssp HHHHHHHHTTCE------EEEEEEEECC---------------CCSSSHHHHHHHHHTCCEEEEEC------CHHHHHHH
T ss_pred HHHHHHHHcCCe------EEEEEEEcCCCCC-------ccccCCccHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHH
Confidence 456666666555 8777654332110 111111223445556678899999876 32 23556677
Q ss_pred HHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 97 FKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 97 ~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
.++.+++.|++-.-...+ +|. ++.+.|.+.|+....
T Consensus 86 l~~~~i~~vv~Gdi~s~y--qr~-r~e~vc~~~gl~~~~ 121 (237)
T 3rjz_A 86 LSGLKIQGIVAGALASKY--QRK-RIEKVAKELGLEVYT 121 (237)
T ss_dssp HTTSCCSEEECC---CCS--HHH-HHHHHHHHTTCEEEC
T ss_pred HHhcCCcEEEECCcchHH--HHH-HHHHHHHHcCCEEEc
Confidence 777899999987666543 554 678888888876653
No 28
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=93.19 E-value=1 Score=33.27 Aligned_cols=120 Identities=15% Similarity=0.106 Sum_probs=74.5
Q ss_pred CCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCCC----CC---hhhHHHHHHHHHHHHHHHHhcCCeEEE---
Q psy9352 15 GMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMR----VG---PNRWRFLQQSLADLDQKFRALGSRLYV--- 84 (146)
Q Consensus 15 DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~~----~~---~~r~~Fl~~sL~~L~~~L~~~g~~L~v--- 84 (146)
|.--....||..|+..+.. .+.++..+++.++....... .. .....--.+.|.++.+.+++.|++...
T Consensus 30 D~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v 107 (294)
T 3loq_A 30 DLSENSFKVLEYLGDFKKV--GVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKIEAAGIKAEVIKP 107 (294)
T ss_dssp CSCTGGGGGGGGHHHHHHT--TCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECSS
T ss_pred CCCHHHHHHHHHHHHHHhh--cCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceeEe
Confidence 3334455667666654432 34569999998875432100 01 111233455677788888888988765
Q ss_pred E-ECChhhHHHHHHHHcCccEEEEeeecChhHHHHH---HHHHHHHHhCCCeEEEecCC
Q psy9352 85 V-QGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD---GLVEDMAKEYKVKVEQHVSH 139 (146)
Q Consensus 85 ~-~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd---~~v~~~~~~~~i~~~~~~~~ 139 (146)
. .|++.+.| .+++.+++.|++...-.. ...+- ....+.++..++++..+...
T Consensus 108 ~~~g~~~~~I--~a~~~~~DliV~G~~g~~-~~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 163 (294)
T 3loq_A 108 FPAGDPVVEI--IKASENYSFIAMGSRGAS-KFKKILLGSVSEGVLHDSKVPVYIFKHD 163 (294)
T ss_dssp CCEECHHHHH--HHHHTTSSEEEEECCCCC-HHHHHHHCCHHHHHHHHCSSCEEEECCC
T ss_pred eccCChhHhe--eeccCCCCEEEEcCCCCc-cccceeeccHHHHHHhcCCCCEEEecCc
Confidence 5 79999998 889999999999754322 11111 12455667788988887654
No 29
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=93.06 E-value=0.74 Score=34.06 Aligned_cols=116 Identities=7% Similarity=-0.063 Sum_probs=64.5
Q ss_pred cHHHHHHHhcCCCCCCCceEEEEEEECCCccCCCCCC-hhhHHHHHHHHHHHHHHHHhcCC---eEEEEECChhhHHHHH
Q psy9352 21 NPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVG-PNRWRFLQQSLADLDQKFRALGS---RLYVVQGKPEEVFPDI 96 (146)
Q Consensus 21 N~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~~~~-~~r~~Fl~~sL~~L~~~L~~~g~---~L~v~~g~~~~~l~~l 96 (146)
..+|..|+..+.. .+.++..+++.++......... ........+....|++-+++.|+ ...+..|++.+.|.++
T Consensus 155 ~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~v~~g~~~~~I~~~ 232 (290)
T 3mt0_A 155 AGIISHAYDIAGL--AKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQAEYGFSDEQLHIEEGPADVLIPRT 232 (290)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeccCHHHHHHHH
Confidence 5677777654332 2345999999987533211000 11111222334444444455565 4688899999999999
Q ss_pred HHHcCccEEEEeeec-ChhH-HHHHHHHHHHHHhCCCeEEEecC
Q psy9352 97 FKTWNIKLLTWEYDI-EPYA-KKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 97 ~~~~~~~~v~~~~~~-~~~~-~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
+++.+++-|++...- +... .-.-....+.+....+++-.+..
T Consensus 233 a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~ 276 (290)
T 3mt0_A 233 AQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVLVLKP 276 (290)
T ss_dssp HHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEEEEECC
T ss_pred HHhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCEEEECC
Confidence 999999999986532 1111 01112344556667788877653
No 30
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=92.36 E-value=2.6 Score=31.30 Aligned_cols=120 Identities=11% Similarity=0.018 Sum_probs=71.9
Q ss_pred cHHHHHHHhcCCCCCC--CceEEEEEEECCCccCC----CCCC--hhhHHHHHHHHHHHHHHHHhcCC---eEEEEECCh
Q psy9352 21 NPALLSAINYKNEKGQ--NILLKPLYILDPHFRKF----MRVG--PNRWRFLQQSLADLDQKFRALGS---RLYVVQGKP 89 (146)
Q Consensus 21 N~aL~~A~~~~~~~~~--~~~l~~vfv~d~~~~~~----~~~~--~~r~~Fl~~sL~~L~~~L~~~g~---~L~v~~g~~ 89 (146)
..+|..|...+.. . +.++..++++++..... .... ........+....|+.-+++.|+ ..++..|++
T Consensus 177 ~~al~~a~~la~~--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~g~~ 254 (319)
T 3olq_A 177 LKLIELTNDLSHR--IQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIAMKELRQKFSIPEEKTHVKEGLP 254 (319)
T ss_dssp HHHHHHHHHHHHH--HCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEESCH
T ss_pred HHHHHHHHHHHHh--ccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEecCCc
Confidence 4567666543221 1 23499999998754321 0011 11222333444555555566776 478889999
Q ss_pred hhHHHHHHHHcCccEEEEeeec-C-hhHHHHHHHHHHHHHhCCCeEEEecCCeee
Q psy9352 90 EEVFPDIFKTWNIKLLTWEYDI-E-PYAKKRDGLVEDMAKEYKVKVEQHVSHTLY 142 (146)
Q Consensus 90 ~~~l~~l~~~~~~~~v~~~~~~-~-~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~ 142 (146)
.+.|.+++++.+++-|++...- + ....-.-....+.+....+++-.+......
T Consensus 255 ~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~~~~ 309 (319)
T 3olq_A 255 EQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIKPDGFT 309 (319)
T ss_dssp HHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSEEEEECCTTCC
T ss_pred HHHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCCEEEECCCCCC
Confidence 9999999999999999986532 2 111222224455666778998888655433
No 31
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=92.18 E-value=1.2 Score=31.27 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeee-------------cChhHHHHHHHHHHHHHhCC
Q psy9352 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYD-------------IEPYAKKRDGLVEDMAKEYK 130 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~-------------~~~~~~~rd~~v~~~~~~~~ 130 (146)
..+..++-+.|++.|+++.|..+.+...+..+++..+++.++.+.- ........-..+..++++.|
T Consensus 94 ~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~K~~~~~~~~~~~~ 172 (232)
T 3fvv_A 94 TVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQWLAGMG 172 (232)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCCEEEECEEEEETTEEEEEEESSCSSTHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEcceEEECCEEeeeecCCCCcchHHHHHHHHHHHHcC
Confidence 4567778888899999999999999999999999999987765431 11112233346777777777
No 32
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=91.80 E-value=1.4 Score=29.74 Aligned_cols=120 Identities=12% Similarity=0.012 Sum_probs=68.3
Q ss_pred CCCCcCcHHHHHHHhcCCCCCCCceEEEE--EEECCCcc-CCCCCC-----hhhHHHHHHHHHHHHHHHHhcCCe---EE
Q psy9352 15 GMRLHDNPALLSAINYKNEKGQNILLKPL--YILDPHFR-KFMRVG-----PNRWRFLQQSLADLDQKFRALGSR---LY 83 (146)
Q Consensus 15 DLRl~DN~aL~~A~~~~~~~~~~~~l~~v--fv~d~~~~-~~~~~~-----~~r~~Fl~~sL~~L~~~L~~~g~~---L~ 83 (146)
|.--....||..|++.+. .+.++..+ ++.++... .....+ .....-..+.|.++.+.+++.|++ ..
T Consensus 25 D~s~~s~~al~~A~~lA~---~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gv~~v~~~ 101 (163)
T 1tq8_A 25 DGSDSSMRAVDRAAQIAG---ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGAKNVEER 101 (163)
T ss_dssp CSSHHHHHHHHHHHHHHT---TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHhC---CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 433344567777776543 24458888 88765432 100000 000001234566777777777876 46
Q ss_pred EEECChhhHHHHHHHHcCccEEEEeeecChhHHHH---HHHHHHHHHhCCCeEEEecC
Q psy9352 84 VVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR---DGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 84 v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~r---d~~v~~~~~~~~i~~~~~~~ 138 (146)
+..|+|.+.|.+++++.+++.|++...-.. ...+ -....+.++...+++..+..
T Consensus 102 v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~-~~~~~~lGSva~~vl~~a~~PVlvV~~ 158 (163)
T 1tq8_A 102 PIVGAPVDALVNLADEEKADLLVVGNVGLS-TIAGRLLGSVPANVSRRAKVDVLIVHT 158 (163)
T ss_dssp EECSSHHHHHHHHHHHTTCSEEEEECCCCC-SHHHHHTBBHHHHHHHHTTCEEEEECC
T ss_pred EecCCHHHHHHHHHHhcCCCEEEECCCCCC-cccceeeccHHHHHHHhCCCCEEEEeC
Confidence 778999999999999999999999765221 1111 11234455667788887653
No 33
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=90.14 E-value=4.5 Score=29.95 Aligned_cols=129 Identities=14% Similarity=0.060 Sum_probs=76.7
Q ss_pred eEEEEecCCCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCC-CCChh-hHHH-------HHHHHHHHHHHHHh
Q psy9352 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFM-RVGPN-RWRF-------LQQSLADLDQKFRA 77 (146)
Q Consensus 7 ~~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~-~~~~~-r~~F-------l~~sL~~L~~~L~~ 77 (146)
..|+=. |.--....||..|+..+.. .+.++..+++.++...... ..+.. ...+ ..+.|.++.+.++.
T Consensus 9 ~ILv~~--D~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (319)
T 3olq_A 9 NLLVVI--DPNQDDQPALRRAVYIVQR--NGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYLE 84 (319)
T ss_dssp EEEEEC--CTTCSCCHHHHHHHHHHHH--HCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEE--CCCcccHHHHHHHHHHHHH--cCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444 6666777889888765433 3456999998865322111 11111 1111 12345556666666
Q ss_pred cCCeE--EEE-ECChhhHHHHHHHHcCccEEEEeeecChhHHH--HHHHHHHHHHhCCCeEEEecCC
Q psy9352 78 LGSRL--YVV-QGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKK--RDGLVEDMAKEYKVKVEQHVSH 139 (146)
Q Consensus 78 ~g~~L--~v~-~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~--rd~~v~~~~~~~~i~~~~~~~~ 139 (146)
.|++. .+. .|++.+.|.+.+++.+++-|++...-.....+ .-....+.+...++++..+...
T Consensus 85 ~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 151 (319)
T 3olq_A 85 AGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDK 151 (319)
T ss_dssp TTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESS
T ss_pred cCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCc
Confidence 67765 445 79999999999999999999986543210000 0113445566778888887654
No 34
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=89.75 E-value=3.3 Score=27.88 Aligned_cols=119 Identities=13% Similarity=0.045 Sum_probs=67.7
Q ss_pred cHHHHHHHhcCCCC-CCCceEEEEEEECCCccCCC-----CCChhhH--------HHHHHHHHHHHHHHHhcCCeE--EE
Q psy9352 21 NPALLSAINYKNEK-GQNILLKPLYILDPHFRKFM-----RVGPNRW--------RFLQQSLADLDQKFRALGSRL--YV 84 (146)
Q Consensus 21 N~aL~~A~~~~~~~-~~~~~l~~vfv~d~~~~~~~-----~~~~~r~--------~Fl~~sL~~L~~~L~~~g~~L--~v 84 (146)
..||..|++..... ..+.++..+++.++...... ..++... .-..+.|..+.+.+...|++. .+
T Consensus 28 ~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v 107 (175)
T 2gm3_A 28 KRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWI 107 (175)
T ss_dssp HHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEE
Confidence 45788887643211 12456888888865321100 0111110 112345666666777778765 56
Q ss_pred EECChhhHHHHHHHHcCccEEEEeeec-ChhHH-HHHHHHHHHHHhCCCeEEEecCC
Q psy9352 85 VQGKPEEVFPDIFKTWNIKLLTWEYDI-EPYAK-KRDGLVEDMAKEYKVKVEQHVSH 139 (146)
Q Consensus 85 ~~g~~~~~l~~l~~~~~~~~v~~~~~~-~~~~~-~rd~~v~~~~~~~~i~~~~~~~~ 139 (146)
..|++.+.|.+++++.+++.|++...- +.... -.-....+.++..+++|..+...
T Consensus 108 ~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~pVlvv~~~ 164 (175)
T 2gm3_A 108 KTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIKRN 164 (175)
T ss_dssp EESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEEECC
T ss_pred ecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCCEEEEcCC
Confidence 789999999999999999999997542 21111 11113345566778888877654
No 35
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=89.27 E-value=2.5 Score=31.07 Aligned_cols=115 Identities=12% Similarity=-0.051 Sum_probs=74.5
Q ss_pred ceEEEEecCCCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEE-
Q psy9352 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYV- 84 (146)
Q Consensus 6 ~~~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v- 84 (146)
+..|+=. |.--....||..|+..+.. .+.++..+++.+|. ... +.|.++.+.++..|++...
T Consensus 8 ~~ILv~~--D~s~~s~~al~~A~~la~~--~~a~l~ll~v~~~~---------~~~----~~l~~~~~~~~~~~~~~~~~ 70 (290)
T 3mt0_A 8 RSILVVI--EPDQLEGLALKRAQLIAGV--TQSHLHLLVCEKRR---------DHS----AALNDLAQELREEGYSVSTN 70 (290)
T ss_dssp CEEEEEC--CSSCSCCHHHHHHHHHHHH--HCCEEEEEEECSSS---------CCH----HHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEe--CCCccchHHHHHHHHHHHh--cCCeEEEEEeeCcH---------HHH----HHHHHHHHHHhhCCCeEEEE
Confidence 3445444 6767778899888865433 34458999998751 111 2355566666777877644
Q ss_pred -E-ECChhhHHHHHHHHcCccEEEEeeecCh-h-HHHHHHHHHHHHHhCCCeEEEec
Q psy9352 85 -V-QGKPEEVFPDIFKTWNIKLLTWEYDIEP-Y-AKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 85 -~-~g~~~~~l~~l~~~~~~~~v~~~~~~~~-~-~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
. .|++.+.|.+.+++.+++-|++...-.. . ..-.-....+.++..++++..+.
T Consensus 71 ~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~ 127 (290)
T 3mt0_A 71 QAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTK 127 (290)
T ss_dssp EECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEEC
T ss_pred EEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEec
Confidence 3 3789999999999999999998654321 1 00011234556677889988887
No 36
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=87.75 E-value=1.3 Score=28.16 Aligned_cols=75 Identities=7% Similarity=0.002 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcC----ccEEEEeeecChhHHHHHHHHHHHHHhCCCe---EEE
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWN----IKLLTWEYDIEPYAKKRDGLVEDMAKEYKVK---VEQ 135 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~----~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~---~~~ 135 (146)
-+..++.++-+.|++.|+++.+..+.+...+..+.+..+ ++.++.+.+.....-.. ..+..++++.|+. +..
T Consensus 18 ~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~Kp~~-~~~~~~~~~~~~~~~~~~~ 96 (137)
T 2pr7_A 18 EDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETNGVVDKVLLSGELGVEKPEE-AAFQAAADAIDLPMRDCVL 96 (137)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHTTSSSEEEEHHHHSCCTTSH-HHHHHHHHHTTCCGGGEEE
T ss_pred ccCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCChHhhccEEEEeccCCCCCCCH-HHHHHHHHHcCCCcccEEE
Confidence 355677777788888999999999877665555555543 46677654432111111 2455666667763 444
Q ss_pred ecC
Q psy9352 136 HVS 138 (146)
Q Consensus 136 ~~~ 138 (146)
+.|
T Consensus 97 vgD 99 (137)
T 2pr7_A 97 VDD 99 (137)
T ss_dssp EES
T ss_pred EcC
Confidence 444
No 37
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=85.47 E-value=2.2 Score=30.06 Aligned_cols=53 Identities=13% Similarity=0.281 Sum_probs=40.1
Q ss_pred HHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 73 QKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 73 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
+.|++.|+++.|+.+++...+..++++.+++.++.... | .-..+..++++.|+
T Consensus 62 ~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~~k--~----k~~~~~~~~~~~~~ 114 (195)
T 3n07_A 62 KALMNAGIEIAIITGRRSQIVENRMKALGISLIYQGQD--D----KVQAYYDICQKLAI 114 (195)
T ss_dssp HHHHHTTCEEEEECSSCCHHHHHHHHHTTCCEEECSCS--S----HHHHHHHHHHHHCC
T ss_pred HHHHHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeCCC--C----cHHHHHHHHHHhCC
Confidence 45677899999999999999999999999998876542 1 12256666666665
No 38
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=85.43 E-value=8.7 Score=28.73 Aligned_cols=73 Identities=14% Similarity=0.105 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--Chh---hHHHHHHHH-cCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG--KPE---EVFPDIFKT-WNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~-~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
.|+.+-+..+++.++++|..+.+... ++. +.+..+++. .+++.|++.-+.. .. . .+.+.+.+.||++..
T Consensus 17 ~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~---~~-~-~~~~~~~~~giPvV~ 91 (350)
T 3h75_A 17 TFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQY---VA-P-QILRLSQGSGIKLFI 91 (350)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSS---HH-H-HHHHHHTTSCCEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchh---hH-H-HHHHHHHhCCCcEEE
Confidence 36777788888889999999988864 333 345666665 6899998853221 11 2 344556678999999
Q ss_pred ecCC
Q psy9352 136 HVSH 139 (146)
Q Consensus 136 ~~~~ 139 (146)
++..
T Consensus 92 ~~~~ 95 (350)
T 3h75_A 92 VNSP 95 (350)
T ss_dssp EESC
T ss_pred EcCC
Confidence 8754
No 39
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=84.20 E-value=2.4 Score=29.46 Aligned_cols=72 Identities=13% Similarity=0.030 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCC----eEEEecC
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKV----KVEQHVS 138 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i----~~~~~~~ 138 (146)
++.++-+.|++.|+++.+..+.+...+..+.+..++ +.++...+.... +..-..+..++++.|+ .+..+.|
T Consensus 107 ~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~-Kp~~~~~~~~~~~lgi~~~~~~v~vGD 185 (231)
T 3kzx_A 107 GAIELLDTLKENNITMAIVSNKNGERLRSEIHHKNLTHYFDSIIGSGDTGTI-KPSPEPVLAALTNINIEPSKEVFFIGD 185 (231)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEETSSSCC-TTSSHHHHHHHHHHTCCCSTTEEEEES
T ss_pred CHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHCCchhheeeEEcccccCCC-CCChHHHHHHHHHcCCCcccCEEEEcC
Confidence 345666788889999999998887778888888774 667776554321 1111255666666666 3444444
Q ss_pred C
Q psy9352 139 H 139 (146)
Q Consensus 139 ~ 139 (146)
+
T Consensus 186 ~ 186 (231)
T 3kzx_A 186 S 186 (231)
T ss_dssp S
T ss_pred C
Confidence 3
No 40
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=84.09 E-value=2.2 Score=29.25 Aligned_cols=54 Identities=11% Similarity=0.146 Sum_probs=39.1
Q ss_pred HHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 71 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
+=+.|++.|+++.|..|++...+..+++..+++ ++... .| .-..+..++++.|+
T Consensus 47 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgi~-~~~~~--~~----k~~~l~~~~~~~~~ 100 (176)
T 3mmz_A 47 GIAALRKSGLTMLILSTEQNPVVAARARKLKIP-VLHGI--DR----KDLALKQWCEEQGI 100 (176)
T ss_dssp HHHHHHHTTCEEEEEESSCCHHHHHHHHHHTCC-EEESC--SC----HHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCeEEEEECcChHHHHHHHHHcCCe-eEeCC--CC----hHHHHHHHHHHcCC
Confidence 456677889999999999999999999999999 55433 21 12256666666554
No 41
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=83.45 E-value=3.2 Score=27.61 Aligned_cols=54 Identities=11% Similarity=0.066 Sum_probs=39.3
Q ss_pred HHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 72 DQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 72 ~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
-+.|++.|+++.++.|.+......++++.++..++......| ..+..++++.|+
T Consensus 40 l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~~~~~kpk~------~~~~~~~~~~~~ 93 (164)
T 3e8m_A 40 IFWAHNKGIPVGILTGEKTEIVRRRAEKLKVDYLFQGVVDKL------SAAEELCNELGI 93 (164)
T ss_dssp HHHHHHTTCCEEEECSSCCHHHHHHHHHTTCSEEECSCSCHH------HHHHHHHHHHTC
T ss_pred HHHHHHCCCEEEEEeCCChHHHHHHHHHcCCCEeecccCChH------HHHHHHHHHcCC
Confidence 455667899999999999999999999999998776542222 145555555554
No 42
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=83.39 E-value=3.8 Score=28.46 Aligned_cols=61 Identities=8% Similarity=-0.008 Sum_probs=42.4
Q ss_pred HHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCC---eEEEecC
Q psy9352 72 DQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKV---KVEQHVS 138 (146)
Q Consensus 72 ~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i---~~~~~~~ 138 (146)
-+.|++.|+++.|+.+++...+..+++..++..++...-..+. .+..+++..|+ ++..+.|
T Consensus 55 l~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~~kpk~~------~~~~~~~~~~~~~~~~~~vGD 118 (191)
T 3n1u_A 55 LKLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKGQVDKRS------AYQHLKKTLGLNDDEFAYIGD 118 (191)
T ss_dssp HHHHHHTTCEEEEECSCCSHHHHHHHHHHTCCEEECSCSSCHH------HHHHHHHHHTCCGGGEEEEEC
T ss_pred HHHHHHCCCeEEEEeCcChHHHHHHHHHcCCccceeCCCChHH------HHHHHHHHhCCCHHHEEEECC
Confidence 3456778999999999999999999999999987765422332 44555555454 3444444
No 43
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=83.30 E-value=1.6 Score=31.19 Aligned_cols=55 Identities=11% Similarity=0.040 Sum_probs=41.6
Q ss_pred HHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 71 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
+=+.|++.|+++.|..|++...+..++++.+++.++... .+ . -..+..++++.|+
T Consensus 84 ~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~~--k~---K-~~~l~~~~~~lg~ 138 (211)
T 3ij5_A 84 GIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQGQ--SD---K-LVAYHELLATLQC 138 (211)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCCEEECSC--SS---H-HHHHHHHHHHHTC
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCchhhccc--CC---h-HHHHHHHHHHcCc
Confidence 556777889999999999999999999999999888754 21 1 2256666666554
No 44
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=83.11 E-value=11 Score=27.40 Aligned_cols=72 Identities=6% Similarity=-0.002 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC---hhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQGK---PEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~---~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
.|+.+-+..+++.+++.|..+.+...+ ....+.+++...+++.|++....... ...+.+.+.||++..++.
T Consensus 23 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~------~~~~~l~~~~iPvV~~~~ 96 (294)
T 3qk7_A 23 STFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED------FRLQYLQKQNFPFLALGR 96 (294)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC------HHHHHHHHTTCCEEEESC
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh------HHHHHHHhCCCCEEEECC
Confidence 477888888999999999999887633 22345566667789999885432211 223345678999998876
Q ss_pred C
Q psy9352 139 H 139 (146)
Q Consensus 139 ~ 139 (146)
.
T Consensus 97 ~ 97 (294)
T 3qk7_A 97 S 97 (294)
T ss_dssp C
T ss_pred C
Confidence 4
No 45
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=82.40 E-value=1.9 Score=29.97 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=41.5
Q ss_pred HHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 71 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
+=+.|++.|+++.|..|.+...+..++++.+++.++.... . + . ..+..++++.|+
T Consensus 54 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgl~~~f~~~~-~---K-~-~~~~~~~~~~g~ 108 (189)
T 3mn1_A 54 GIKMLIASGVTTAIISGRKTAIVERRAKSLGIEHLFQGRE-D---K-L-VVLDKLLAELQL 108 (189)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCSEEECSCS-C---H-H-HHHHHHHHHHTC
T ss_pred HHHHHHHCCCEEEEEECcChHHHHHHHHHcCCHHHhcCcC-C---h-H-HHHHHHHHHcCC
Confidence 4456778899999999999999999999999998886541 1 1 1 366666766664
No 46
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=81.99 E-value=8.8 Score=27.77 Aligned_cols=71 Identities=11% Similarity=-0.043 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECC----hhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQGK----PEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g~----~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
|+.+-+..+++.+++.|..+.+...+ ....+.+++.+.+++.|++....... ...+.+.+.||++..++.
T Consensus 24 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~------~~~~~l~~~~iPvV~i~~ 97 (288)
T 3gv0_A 24 FTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPND------PRVRFMTERNMPFVTHGR 97 (288)
T ss_dssp HHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTC------HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCCc------HHHHHHhhCCCCEEEECC
Confidence 77788888999999999999887532 22345566667789998875322111 223345568999998875
Q ss_pred C
Q psy9352 139 H 139 (146)
Q Consensus 139 ~ 139 (146)
.
T Consensus 98 ~ 98 (288)
T 3gv0_A 98 S 98 (288)
T ss_dssp C
T ss_pred c
Confidence 4
No 47
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=81.34 E-value=9.5 Score=25.77 Aligned_cols=71 Identities=10% Similarity=0.024 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCCeEE---EEECChhhHHHHHHHHcC--ccEEEEeeecC--hhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 65 QQSLADLDQKFRALGSRLY---VVQGKPEEVFPDIFKTWN--IKLLTWEYDIE--PYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~~L~---v~~g~~~~~l~~l~~~~~--~~~v~~~~~~~--~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.+.|..--+.|++.|++-. +..++|...|.+...+.+ ++.|+..-.+- .....+| +. +.+++.|+++.-+-
T Consensus 57 ~~~l~~sl~aL~~~G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph~vs~~fh~D-wa-srAr~~gvPVlhl~ 134 (138)
T 2iel_A 57 EEEAAAAKRALEAQGIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPPGLSRWLRLD-VH-TQAERFGLPVIHVI 134 (138)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCTTTCHHHHTT-HH-HHGGGGSSCEEEEE
T ss_pred HHHHHHHHHHHHHcCCcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCchHHHHHhcc-HH-HHHHhcCCCEEEEe
Confidence 3555566666777888765 889999999999999999 98888765543 2334555 44 44444899886544
No 48
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=80.88 E-value=3.1 Score=28.68 Aligned_cols=55 Identities=11% Similarity=0.057 Sum_probs=39.5
Q ss_pred HHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 71 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
+=+.|++.|+++.|+.|.+...+..++++.++..++......+. .+..++++.|+
T Consensus 61 ~l~~L~~~g~~v~ivT~~~~~~~~~~l~~lgl~~~~~~~kpk~~------~~~~~~~~~g~ 115 (188)
T 2r8e_A 61 GIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKLI------AFSDLLEKLAI 115 (188)
T ss_dssp HHHHHHTTTCEEEEECSSCCHHHHHHHHHHTCCEEECSCSCSHH------HHHHHHHHHTC
T ss_pred HHHHHHHCCCeEEEEeCCChHHHHHHHHHcCCceeecCCCCCHH------HHHHHHHHcCC
Confidence 34556778999999999998888999999999887754322222 45555555554
No 49
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=80.20 E-value=2.1 Score=30.94 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=66.7
Q ss_pred cCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCC---CCCC----h----------hhHHHHHHHHHHHHHHHHhcCCe
Q psy9352 19 HDNPALLSAINYKNEKGQNILLKPLYILDPHFRKF---MRVG----P----------NRWRFLQQSLADLDQKFRALGSR 81 (146)
Q Consensus 19 ~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~---~~~~----~----------~r~~Fl~~sL~~L~~~L~~~g~~ 81 (146)
....||..|+..+.. .+.++..+++.++..... .... . ....-..+.|.++.+.+++.|++
T Consensus 12 ~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 89 (268)
T 3ab8_A 12 QARGAEALAEWLAYK--LSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVRQSALAAGVA 89 (268)
T ss_dssp GGHHHHHHHHHHHHH--HTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHH--hCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 344677777654322 234499999987532110 0000 0 01122334566677777777865
Q ss_pred E--EEEECChhhHHHHHHHHcCccEEEEeeecCh--hH-HHHHHHHHHHHHhCCCeEEEecC
Q psy9352 82 L--YVVQGKPEEVFPDIFKTWNIKLLTWEYDIEP--YA-KKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 82 L--~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~--~~-~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
. .+..|++.+.|.+. +.+++-|++...-.. .. .-.-....+.++..++++..+..
T Consensus 90 ~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~~ 149 (268)
T 3ab8_A 90 VEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAPG 149 (268)
T ss_dssp EEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEECS
T ss_pred eEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEECC
Confidence 4 56689999999888 779999999754211 11 00111344556667888887764
No 50
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=80.19 E-value=6 Score=31.29 Aligned_cols=63 Identities=10% Similarity=0.153 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHH--------cCccEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT--------WNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~--------~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
-++.++.++=+.|++.|+.+-|..+++.+.+...+++ .++..++.+.... -..+.+++++.|+
T Consensus 256 ~~ypgv~e~L~~Lk~~Gi~laI~Snn~~~~v~~~l~~~~~~~l~l~~~~~v~~~~KPK------p~~l~~al~~Lgl 326 (387)
T 3nvb_A 256 KAFTEFQEWVKKLKNRGIIIAVCSKNNEGKAKEPFERNPEMVLKLDDIAVFVANWENK------ADNIRTIQRTLNI 326 (387)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEESCHHHHHHHHHHCTTCSSCGGGCSEEEEESSCH------HHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhhccccccCccCccEEEeCCCCc------HHHHHHHHHHhCc
Confidence 4678889999999999999999999998888888876 4556665533222 2267777777776
No 51
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=80.03 E-value=14 Score=26.48 Aligned_cols=73 Identities=3% Similarity=-0.044 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--Chh---hHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG--KPE---EVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
.|..+-+..+++.+++.|..+.+... ++. +.+..+. ..+++.|++.... + ...+ ...+.+.+.||++..+
T Consensus 18 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~-~--~~~~-~~~~~~~~~~iPvV~~ 92 (291)
T 3l49_A 18 DWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLI-AQKPDAIIEQLGN-L--DVLN-PWLQKINDAGIPLFTV 92 (291)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH-HHCCSEEEEESSC-H--HHHH-HHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHH-HcCCCEEEEeCCC-h--hhhH-HHHHHHHHCCCcEEEe
Confidence 47778888899999999999988863 332 2344443 3589999874321 1 1112 3344456789999988
Q ss_pred cCC
Q psy9352 137 VSH 139 (146)
Q Consensus 137 ~~~ 139 (146)
+..
T Consensus 93 ~~~ 95 (291)
T 3l49_A 93 DTA 95 (291)
T ss_dssp SCC
T ss_pred cCC
Confidence 754
No 52
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=79.88 E-value=6.7 Score=28.17 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHH-cCccEEEEeeecC---hhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT-WNIKLLTWEYDIE---PYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~-~~~~~v~~~~~~~---~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
++|+-..+..+++||+-+|+.....+.-..+.+. .+++-|..+..++ |...+.+...++.+++.|+++..
T Consensus 30 ~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 103 (201)
T 1vp8_A 30 ETLRLAVERAKELGIKHLVVASSYGDTAMKALEMAEGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVR 103 (201)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHCTTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHhcCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEE
Confidence 5677777788888999888764333322333333 3567777766654 44556667888899999998875
No 53
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=79.81 E-value=10 Score=24.86 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
++=+.|++.|+++.+..+.+...+..+++..++...+-..-.. ...+..++++.|+
T Consensus 43 ~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~kp~------~~~~~~~~~~~~~ 98 (162)
T 2p9j_A 43 IGIKLLQKMGITLAVISGRDSAPLITRLKELGVEEIYTGSYKK------LEIYEKIKEKYSL 98 (162)
T ss_dssp HHHHHHHTTTCEEEEEESCCCHHHHHHHHHTTCCEEEECC--C------HHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCHhhccCCCCC------HHHHHHHHHHcCC
Confidence 4445566789999999999999999999999998765432111 2255566666665
No 54
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}
Probab=79.37 E-value=7.2 Score=26.13 Aligned_cols=65 Identities=6% Similarity=0.063 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
.++.++-+.|++.|.++.++.+.+.+.+..+.+..++ +.++...+.... +-.-..+..+++..|+
T Consensus 92 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~-kp~~~~~~~~~~~~~~ 160 (214)
T 3e58_A 92 PDVLKVLNEVKSQGLEIGLASSSVKADIFRALEENRLQGFFDIVLSGEEFKES-KPNPEIYLTALKQLNV 160 (214)
T ss_dssp TTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGGCSEEEEGGGCSSC-TTSSHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHcCcHhheeeEeecccccCC-CCChHHHHHHHHHcCC
Confidence 3456677788889999999999888888888888775 566666554321 1111245555555555
No 55
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=79.25 E-value=11 Score=29.40 Aligned_cols=72 Identities=11% Similarity=0.055 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeee-----------cC--hhHHHHHHHHHHHHHhCCC--
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYD-----------IE--PYAKKRDGLVEDMAKEYKV-- 131 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~-----------~~--~~~~~rd~~v~~~~~~~~i-- 131 (146)
++.++-+.|++.|.++.++.|.+...+..+.+..+++.++.+.- .+ ...+..-..+..++++.|+
T Consensus 260 g~~e~l~~Lk~~G~~~~ivS~~~~~~~~~~~~~lgl~~~~~~~l~~~dg~~tg~~~~~v~~~kpk~~~~~~~~~~~gi~~ 339 (415)
T 3p96_A 260 GARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAANELEIVDGTLTGRVVGPIIDRAGKATALREFAQRAGVPM 339 (415)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCSEEEEECEEEETTEEEEEECSSCCCHHHHHHHHHHHHHHHTCCG
T ss_pred cHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCccceeeeeEEEeCCEEEeeEccCCCCCcchHHHHHHHHHHcCcCh
Confidence 45567778889999999999999888999999999998876531 00 1123333467777777776
Q ss_pred -eEEEecC
Q psy9352 132 -KVEQHVS 138 (146)
Q Consensus 132 -~~~~~~~ 138 (146)
.+..+.|
T Consensus 340 ~~~i~vGD 347 (415)
T 3p96_A 340 AQTVAVGD 347 (415)
T ss_dssp GGEEEEEC
T ss_pred hhEEEEEC
Confidence 3444444
No 56
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=78.83 E-value=5.5 Score=34.10 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=41.8
Q ss_pred HHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 72 DQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 72 ~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
-++|++.|+.+.+..|+.......++++.|++.+++. ..|..+ .+.++++ ++.|-.+-.+
T Consensus 563 I~~L~~~Gi~v~mlTGd~~~~a~~ia~~lgi~~v~a~--~~P~~K--~~~v~~l-~~~g~~V~~v 622 (736)
T 3rfu_A 563 ILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAE--IMPEDK--SRIVSEL-KDKGLIVAMA 622 (736)
T ss_dssp HHHHHHHTCEEEEECSSCHHHHHHHHHHHTCCCEECS--CCHHHH--HHHHHHH-HHHSCCEEEE
T ss_pred HHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCEEEEe--cCHHHH--HHHHHHH-HhcCCEEEEE
Confidence 3455667999999999999999999999999998884 455433 2245444 4444334333
No 57
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=78.69 E-value=6.2 Score=26.82 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=38.9
Q ss_pred HHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 71 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
+=+.|++.|+++.+..|.+...+..++++.++..++... .| .-..+..++++.|+
T Consensus 43 ~l~~L~~~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~~--k~----k~~~~~~~~~~~~~ 97 (180)
T 1k1e_A 43 GIKMLMDADIQVAVLSGRDSPILRRRIADLGIKLFFLGK--LE----KETACFDLMKQAGV 97 (180)
T ss_dssp HHHHHHHTTCEEEEEESCCCHHHHHHHHHHTCCEEEESC--SC----HHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCeEEEEeCCCcHHHHHHHHHcCCceeecCC--CC----cHHHHHHHHHHcCC
Confidence 444566789999999999999999999999998866432 11 12255566666554
No 58
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}
Probab=78.67 E-value=12 Score=28.10 Aligned_cols=73 Identities=12% Similarity=0.113 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeee-------------cChhHHHHHHHHHHHHHhCCC--
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYD-------------IEPYAKKRDGLVEDMAKEYKV-- 131 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~-------------~~~~~~~rd~~v~~~~~~~~i-- 131 (146)
++.++-+.|++.|+++.++.+.+......+.++.+++.++.+.- .....+..-..+..++++.|+
T Consensus 182 g~~~~l~~L~~~g~~~~ivS~~~~~~~~~~~~~lgl~~~~~~~l~~~d~~~tg~~~~~~~~~kpk~~~~~~~~~~lgi~~ 261 (335)
T 3n28_A 182 ELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLDYAQSNTLEIVSGKLTGQVLGEVVSAQTKADILLTLAQQYDVEI 261 (335)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEEEEEEETTEEEEEEESCCCCHHHHHHHHHHHHHHHTCCG
T ss_pred CHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCCeEEeeeeEeeCCeeeeeecccccChhhhHHHHHHHHHHcCCCh
Confidence 34556678888999999999998888889999999988766531 011122333467777777675
Q ss_pred -eEEEecCC
Q psy9352 132 -KVEQHVSH 139 (146)
Q Consensus 132 -~~~~~~~~ 139 (146)
.+..+.|.
T Consensus 262 ~~~v~vGDs 270 (335)
T 3n28_A 262 HNTVAVGDG 270 (335)
T ss_dssp GGEEEEECS
T ss_pred hhEEEEeCC
Confidence 34444443
No 59
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=78.23 E-value=2.6 Score=30.44 Aligned_cols=79 Identities=10% Similarity=0.044 Sum_probs=50.8
Q ss_pred CCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeE--EEEECChhhH
Q psy9352 15 GMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRL--YVVQGKPEEV 92 (146)
Q Consensus 15 DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L--~v~~g~~~~~ 92 (146)
|..-....+|..|...+.. .+.++..+++.++.. -..+.+.++.+.|++.|++. .+..|++.+.
T Consensus 162 d~s~~~~~al~~a~~la~~--~~a~l~ll~v~~~~~------------~~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~ 227 (268)
T 3ab8_A 162 DASESAVRALHALAPLARA--LGLGVRVVSVHEDPA------------RAEAWALEAEAYLRDHGVEASALVLGGDAADH 227 (268)
T ss_dssp CSCHHHHHHHHHHHHHHHH--HTCCEEEEEECSSHH------------HHHHHHHHHHHHHHHTTCCEEEEEECSCHHHH
T ss_pred CCCHHHHHHHHHHHHhhhc--CCCEEEEEEEcCcHH------------HHHHHHHHHHHHHHHcCCceEEEEeCCChHHH
Confidence 3333444567666543221 123388888876531 12345677777888888765 4567999999
Q ss_pred HHHHHHHcCccEEEEee
Q psy9352 93 FPDIFKTWNIKLLTWEY 109 (146)
Q Consensus 93 l~~l~~~~~~~~v~~~~ 109 (146)
|.+++++. +-|++..
T Consensus 228 i~~~a~~~--dliV~G~ 242 (268)
T 3ab8_A 228 LLRLQGPG--DLLALGA 242 (268)
T ss_dssp HHHHCCTT--EEEEEEC
T ss_pred HHHHHHhC--CEEEECC
Confidence 99999886 7777765
No 60
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=78.20 E-value=1.8 Score=32.18 Aligned_cols=120 Identities=14% Similarity=0.029 Sum_probs=62.9
Q ss_pred CCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCC-CCCC-hhhHHHHHHHHHHHHHHHHh--cC--CeEEEEECC
Q psy9352 15 GMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKF-MRVG-PNRWRFLQQSLADLDQKFRA--LG--SRLYVVQGK 88 (146)
Q Consensus 15 DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~-~~~~-~~r~~Fl~~sL~~L~~~L~~--~g--~~L~v~~g~ 88 (146)
|..-....+|..|...+.. .+.++..+++.++..... .... .....-..+.|.++.+.+.+ .| ....+..|+
T Consensus 179 D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~ 256 (309)
T 3cis_A 179 DGSSASELATAIAFDEASR--RNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGWQERYPNVAITRVVVRDQ 256 (309)
T ss_dssp CSSHHHHHHHHHHHHHHHH--TTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTHHHHCTTSCEEEEEESSC
T ss_pred CCChHHHHHHHHHHHHHHh--cCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEEcCC
Confidence 4433445677777654322 234499999987643211 0000 00111122223333333433 24 445677899
Q ss_pred hhhHHHHHHHHcCccEEEEeeec-Chh-HHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 89 PEEVFPDIFKTWNIKLLTWEYDI-EPY-AKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 89 ~~~~l~~l~~~~~~~~v~~~~~~-~~~-~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
+.+.|.+.++ +++-|++...- +.. ..-.-....+.++...+++..+..
T Consensus 257 ~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~~~pVlvv~~ 306 (309)
T 3cis_A 257 PARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVARE 306 (309)
T ss_dssp HHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHHhcCCCCEEEeCC
Confidence 9999999997 89999986432 111 000112344456667788877653
No 61
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}
Probab=78.11 E-value=11 Score=28.49 Aligned_cols=72 Identities=10% Similarity=0.074 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeec-----------C--hhHHHHHHHHHHHHHhCCC--
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDI-----------E--PYAKKRDGLVEDMAKEYKV-- 131 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~-----------~--~~~~~rd~~v~~~~~~~~i-- 131 (146)
++.++-+.|++.|+++.|+.+.+...+..+++..|++.++.+.-. + ......-..+..++++.|+
T Consensus 183 g~~e~L~~Lk~~G~~v~IvSn~~~~~~~~~l~~lgl~~~f~~~l~~~dg~~tg~i~~~~~~~kpkp~~~~~~~~~lgv~~ 262 (317)
T 4eze_A 183 GLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLDYAFSNTVEIRDNVLTDNITLPIMNAANKKQTLVDLAARLNIAT 262 (317)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEECEEEETTEEEEEECSSCCCHHHHHHHHHHHHHHHTCCG
T ss_pred CHHHHHHHHHhCCCEEEEEeCccHHHHHHHHHHcCCCeEEEEEEEeeCCeeeeeEecccCCCCCCHHHHHHHHHHcCCCc
Confidence 556777788999999999999999999999999999887764411 0 0112223367777777666
Q ss_pred -eEEEecC
Q psy9352 132 -KVEQHVS 138 (146)
Q Consensus 132 -~~~~~~~ 138 (146)
.+..+.|
T Consensus 263 ~~~i~VGD 270 (317)
T 4eze_A 263 ENIIACGD 270 (317)
T ss_dssp GGEEEEEC
T ss_pred ceEEEEeC
Confidence 3444444
No 62
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Probab=77.60 E-value=10 Score=26.35 Aligned_cols=64 Identities=14% Similarity=0.182 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
++.++-+.|++.|+++.+..+.+...+..+.+..++ +.++...+.+.. +..-..+..++++.|+
T Consensus 109 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~-Kp~~~~~~~~~~~~~~ 176 (240)
T 2no4_A 109 DAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVLDSCLSADDLKIY-KPDPRIYQFACDRLGV 176 (240)
T ss_dssp THHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGGCSEEEEGGGTTCC-TTSHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHhcCcHHHcCEEEEccccCCC-CCCHHHHHHHHHHcCC
Confidence 455566678888999999998888888888888775 566665544211 1111245555665565
No 63
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Probab=76.76 E-value=12 Score=25.79 Aligned_cols=64 Identities=11% Similarity=0.162 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
++.++=+.|++.|+++.+..+.+...+..+.+..++ +.++...+.... +..-..+..++++.|+
T Consensus 99 ~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~-Kp~~~~~~~~~~~~~~ 166 (232)
T 1zrn_A 99 EVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLRDGFDHLLSVDPVQVY-KPDNRVYELAEQALGL 166 (232)
T ss_dssp THHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGGCSEEEESGGGTCC-TTSHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhcChHhhhheEEEecccCCC-CCCHHHHHHHHHHcCC
Confidence 455566678888999999998888777788887774 566665543211 1111245555555555
No 64
>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}
Probab=76.39 E-value=7 Score=27.20 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCCe
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKVK 132 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~ 132 (146)
++.++-+.|++.|+++.++.+.+...+..+.+..++ +.++...+... .+..-..+..++++.|+.
T Consensus 114 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~-~kp~~~~~~~~~~~~g~~ 182 (240)
T 3sd7_A 114 NMKEILEMLYKNGKILLVATSKPTVFAETILRYFDIDRYFKYIAGSNLDGT-RVNKNEVIQYVLDLCNVK 182 (240)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEECTTSC-CCCHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHcCcHhhEEEEEeccccCC-CCCCHHHHHHHHHHcCCC
Confidence 345666778889999999998887778888888775 56666554432 222223666777777765
No 65
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=76.35 E-value=10 Score=25.76 Aligned_cols=73 Identities=3% Similarity=-0.045 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeee-------------cChhHHHHHHHHHHHHHhCCC--
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYD-------------IEPYAKKRDGLVEDMAKEYKV-- 131 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~-------------~~~~~~~rd~~v~~~~~~~~i-- 131 (146)
++.++-+.|++.|+++.++.+.+...+..+.+..++...+.+.- ........-..+..++++.|+
T Consensus 79 ~~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~g~~~ 158 (217)
T 3m1y_A 79 GALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSNTLIVENDALNGLVTGHMMFSHSKGEMLLVLQRLLNISK 158 (217)
T ss_dssp THHHHHHHHHTTTEEEEEEEEEEHHHHHHHHHHHTCSEEEEEEEEEETTEEEEEEEESCCSTTHHHHHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHcCcchhccceeEEeCCEEEeeeccCCCCCCChHHHHHHHHHHcCCCH
Confidence 46667778889999999999988888888888888876554321 001122233467777777676
Q ss_pred -eEEEecCC
Q psy9352 132 -KVEQHVSH 139 (146)
Q Consensus 132 -~~~~~~~~ 139 (146)
++..+.|+
T Consensus 159 ~~~i~vGDs 167 (217)
T 3m1y_A 159 TNTLVVGDG 167 (217)
T ss_dssp TTEEEEECS
T ss_pred hHEEEEeCC
Confidence 34444443
No 66
>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}
Probab=76.13 E-value=11 Score=25.79 Aligned_cols=64 Identities=11% Similarity=0.158 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
.+.++-+.|++.|.++.+..+.+.+.+..+.+..++ +.++...+.... +..-..+..+++..|+
T Consensus 100 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~-kp~~~~~~~~~~~~~~ 167 (230)
T 3um9_A 100 DVPQALQQLRAAGLKTAILSNGSRHSIRQVVGNSGLTNSFDHLISVDEVRLF-KPHQKVYELAMDTLHL 167 (230)
T ss_dssp THHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHTCGGGCSEEEEGGGTTCC-TTCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHHCCChhhcceeEehhhcccC-CCChHHHHHHHHHhCC
Confidence 455666778888999999998888877777777664 567766554321 1112255666666665
No 67
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A
Probab=75.83 E-value=6.6 Score=27.32 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeee
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYD 110 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~ 110 (146)
++.++=+.|++.|+++.++.+.+...+..+.+..++ +.++...+
T Consensus 87 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~f~~i~~~~~ 134 (222)
T 2nyv_A 87 EIPYTLEALKSKGFKLAVVSNKLEELSKKILDILNLSGYFDLIVGGDT 134 (222)
T ss_dssp THHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGGGCSEEECTTS
T ss_pred CHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCHHHheEEEecCc
Confidence 445556677788999999998887777888888774 45665444
No 68
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=75.69 E-value=13 Score=26.32 Aligned_cols=74 Identities=9% Similarity=-0.014 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEE----CChh---hHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEE
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQ----GKPE---EVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVE 134 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~----g~~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~ 134 (146)
.|+.+-+..+++.+++.|..+.+.. +++. +.+..+.++.+++.|++....... . + ...+.+.+.||++.
T Consensus 13 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~--~-~-~~~~~~~~~~ipvV 88 (276)
T 3ksm_A 13 AYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAED--L-T-PSVAQYRARNIPVL 88 (276)
T ss_dssp THHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTT--T-H-HHHHHHHHTTCCEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHH--H-H-HHHHHHHHCCCcEE
Confidence 3667778888899999999998875 2333 245555554339999885421111 1 1 23344567899999
Q ss_pred EecCC
Q psy9352 135 QHVSH 139 (146)
Q Consensus 135 ~~~~~ 139 (146)
.++..
T Consensus 89 ~~~~~ 93 (276)
T 3ksm_A 89 VVDSD 93 (276)
T ss_dssp EESSC
T ss_pred EEecC
Confidence 88754
No 69
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=75.46 E-value=20 Score=25.70 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECChh-h---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQGKPE-E---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~-~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.|+.+-+..+++.+++.|..+.+...+.. + .+.+.+...+++.|++...... + ...+.+.+.||++..++
T Consensus 26 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~-----~-~~~~~l~~~~iPvV~~~ 99 (292)
T 3k4h_A 26 PFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREN-----D-RIIQYLHEQNFPFVLIG 99 (292)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-----C-HHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-----h-HHHHHHHHCCCCEEEEC
Confidence 37777888889999999999988764422 2 2333444568999887432221 1 23344567899999887
Q ss_pred CC
Q psy9352 138 SH 139 (146)
Q Consensus 138 ~~ 139 (146)
..
T Consensus 100 ~~ 101 (292)
T 3k4h_A 100 KP 101 (292)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 70
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=75.23 E-value=9.1 Score=24.76 Aligned_cols=47 Identities=9% Similarity=0.075 Sum_probs=33.3
Q ss_pred hhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 90 EEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 90 ~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
.+.+.+++++.+++.|+..-..... ..+ +.+...|.+.|+++....+
T Consensus 54 ~~~l~~~~~~~~id~viia~~~~~~-~~~-~~i~~~l~~~gv~v~~vP~ 100 (141)
T 3nkl_A 54 PKYLERLIKKHCISTVLLAVPSASQ-VQK-KVIIESLAKLHVEVLTIPN 100 (141)
T ss_dssp GGGHHHHHHHHTCCEEEECCTTSCH-HHH-HHHHHHHHTTTCEEEECCC
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCH-HHH-HHHHHHHHHcCCeEEECCC
Confidence 3457889999999999986543322 233 3677778889999988765
No 71
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=74.96 E-value=20 Score=25.55 Aligned_cols=71 Identities=7% Similarity=-0.033 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC--hhh--HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQGK--PEE--VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~--~~~--~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.|+.+-+..+++.+++.|..+.+...+ +.. .+.+.+...+++.|++..... + ...+.+.+.||++..++
T Consensus 20 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~-~~~~~l~~~~iPvV~i~ 92 (276)
T 3jy6_A 20 YFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN------P-QTVQEILHQQMPVVSVD 92 (276)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC------H-HHHHHHHTTSSCEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc------H-HHHHHHHHCCCCEEEEe
Confidence 477788888999999999999988743 222 122333446899888854322 2 33444567899999887
Q ss_pred CC
Q psy9352 138 SH 139 (146)
Q Consensus 138 ~~ 139 (146)
..
T Consensus 93 ~~ 94 (276)
T 3jy6_A 93 RE 94 (276)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 72
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=74.74 E-value=20 Score=25.83 Aligned_cols=72 Identities=14% Similarity=0.039 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC-hhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQGK-PEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~-~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.|+.+-+..+++.++++|..+.+.... +.. .+..+.. .+++.|++..... .. . . ...+.+.+.||++..++
T Consensus 15 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~~-~~-~-~-~~~~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 15 PWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAA-SGAKGFVICTPDP-KL-G-S-AIVAKARGYDMKVIAVD 89 (306)
T ss_dssp HHHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHH-TTCCEEEEECSCG-GG-H-H-HHHHHHHHTTCEEEEES
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEeCCCc-hh-h-H-HHHHHHHHCCCcEEEeC
Confidence 477788888899999999999877653 332 3444443 4789888754221 11 1 1 23334567899999988
Q ss_pred C
Q psy9352 138 S 138 (146)
Q Consensus 138 ~ 138 (146)
.
T Consensus 90 ~ 90 (306)
T 8abp_A 90 D 90 (306)
T ss_dssp S
T ss_pred C
Confidence 4
No 73
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=74.70 E-value=21 Score=25.77 Aligned_cols=72 Identities=11% Similarity=0.091 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECCh-hh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQGKP-EE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~~-~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.|+.+-+..+++.+++.|..+.+...+. .+ .+.+.+...+++.|++...... + ...+.+.+.|+++..++
T Consensus 25 ~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-----~-~~~~~l~~~~iPvV~i~ 98 (295)
T 3hcw_A 25 PFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN-----D-PIKQMLIDESMPFIVIG 98 (295)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT-----C-HHHHHHHHTTCCEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC-----h-HHHHHHHhCCCCEEEEC
Confidence 4788888999999999999998876432 22 2334445568999988532211 1 23344567899999887
Q ss_pred CC
Q psy9352 138 SH 139 (146)
Q Consensus 138 ~~ 139 (146)
..
T Consensus 99 ~~ 100 (295)
T 3hcw_A 99 KP 100 (295)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 74
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=74.65 E-value=5.5 Score=26.67 Aligned_cols=43 Identities=0% Similarity=-0.011 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChh---------------hHHHHHHHHcC--ccEEEE
Q psy9352 65 QQSLADLDQKFRALGSRLYVVQGKPE---------------EVFPDIFKTWN--IKLLTW 107 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~~L~v~~g~~~---------------~~l~~l~~~~~--~~~v~~ 107 (146)
..++.++=+.|++.|+++.|..+.+. +.+..+.+..+ ++.++.
T Consensus 29 ~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 88 (179)
T 3l8h_A 29 LPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMGGVVDAIFM 88 (179)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCCCceeEEEE
Confidence 35566666778889999999998775 55667777888 888875
No 75
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=74.64 E-value=8.5 Score=26.25 Aligned_cols=47 Identities=15% Similarity=0.311 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChh---hHHHHHHHHcCc----cEEEEeee
Q psy9352 64 LQQSLADLDQKFRALGSRLYVVQGKPE---EVFPDIFKTWNI----KLLTWEYD 110 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~~L~v~~g~~~---~~l~~l~~~~~~----~~v~~~~~ 110 (146)
+..++.++=+.|++.|+++.|+.+.+. +.+..+.+..++ +.|++..+
T Consensus 35 ~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~fd~i~~~~~ 88 (189)
T 3ib6_A 35 LRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNS 88 (189)
T ss_dssp BCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGGEEEEEECCT
T ss_pred eCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhheEEEEEccc
Confidence 345666666778889999999998776 777888888886 56666654
No 76
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=74.44 E-value=20 Score=26.02 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECChh-h---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQGKPE-E---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~-~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.|+.+-+..+++.+++.|..+.+...+.. + .+.+.+...+++.|++...... + ...+.+.+.||++..++
T Consensus 40 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-----~-~~~~~l~~~~iPvV~i~ 113 (305)
T 3huu_A 40 PFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKD-----D-PIEHLLNEFKVPYLIVG 113 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTT-----C-HHHHHHHHTTCCEEEES
T ss_pred cHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCC-----c-HHHHHHHHcCCCEEEEC
Confidence 47788888899999999999988764322 1 2334445568999887532221 1 23344567899999887
Q ss_pred CCe
Q psy9352 138 SHT 140 (146)
Q Consensus 138 ~~~ 140 (146)
...
T Consensus 114 ~~~ 116 (305)
T 3huu_A 114 KSL 116 (305)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 77
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=74.32 E-value=8.2 Score=26.41 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCCe---EEEecCC
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKVK---VEQHVSH 139 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~---~~~~~~~ 139 (146)
++.++-+.|++.|+++.+..+.+...+..+.+..++ +.++...+... .+..-..+..+++..|+. +..+.|+
T Consensus 90 ~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~-~kp~~~~~~~~~~~lgi~~~~~i~iGD~ 168 (226)
T 3mc1_A 90 GIEALLSSLKDYGFHLVVATSKPTVFSKQILEHFKLAFYFDAIVGSSLDGK-LSTKEDVIRYAMESLNIKSDDAIMIGDR 168 (226)
T ss_dssp THHHHHHHHHHHTCEEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEECTTSS-SCSHHHHHHHHHHHHTCCGGGEEEEESS
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCHhheeeeeccCCCCC-CCCCHHHHHHHHHHhCcCcccEEEECCC
Confidence 455666778888999999998887777888887764 55666554432 222233677777776763 4444443
No 78
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=74.30 E-value=2.3 Score=33.49 Aligned_cols=39 Identities=15% Similarity=0.178 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc
Q psy9352 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI 102 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 102 (146)
+.....+|-+.|++.|++.+|+.|.+.+.+..++++.|+
T Consensus 222 ~~p~~~eLi~~L~~~G~~v~IVSgg~~~~v~~ia~~lg~ 260 (385)
T 4gxt_A 222 TLDEMVDLYRSLEENGIDCYIVSASFIDIVRAFATDTNN 260 (385)
T ss_dssp ECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHCTTS
T ss_pred eCHHHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCc
Confidence 457889999999999999999999999999999988653
No 79
>1z9b_A Translation initiation factor IF-2; protein synthesis translation intiation IF2 FMet-tRNA structure; NMR {Geobacillus stearothermophilus}
Probab=74.13 E-value=13 Score=25.02 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcC---CeEEEEE---CChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 66 QSLADLDQKFRALG---SRLYVVQ---GKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 66 ~sL~~L~~~L~~~g---~~L~v~~---g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.||+.|...|.+++ +.+-|+. |...+.=-.++...++.-+.||-...+. .++.+++.||++..++
T Consensus 52 GSlEAl~~~L~~l~~~ev~i~Ii~~gVG~ItesDV~lA~as~aiIigFNV~~~~~-------a~~~A~~~gV~I~~~~ 122 (135)
T 1z9b_A 52 GSVEALVAALQKIDVEGVRVKIIHAAVGAITESDISLATASNAIVIGFNVRPDAN-------AKRAAESEKVDIRLHR 122 (135)
T ss_dssp HHHHHHHHHHTTCCCSSCEEEEEEEEESCBCHHHHHHHHHHTCEEEESSCCBCTT-------HHHHHHTTTCCCEECT
T ss_pred chHHHHHHHHHhcCCCceEEEEEeecCCCCCHHHHHHHHHcCCEEEEeeCCCCHH-------HHHHHHHcCCeEEEeC
Confidence 68899999998875 5666654 7766544466776677777777666553 4455677889887654
No 80
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=73.78 E-value=21 Score=25.52 Aligned_cols=75 Identities=7% Similarity=0.050 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECC--hhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQGK--PEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g~--~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
|+.+-+..+++.+++.|..+.+...+ +.. .+..+. ..+++.|++............ ...+.+.+.||++..++
T Consensus 29 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~~~~~~~-~~~~~~~~~~iPvV~~~ 106 (298)
T 3tb6_A 29 IFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLL-SQHIDGLIVEPTKSALQTPNI-GYYLNLEKNGIPFAMIN 106 (298)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH-HTCCSEEEECCSSTTSCCTTH-HHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHH-HCCCCEEEEecccccccCCcH-HHHHHHHhcCCCEEEEe
Confidence 66677888889999999999988743 332 233333 568999988542211000111 23344567899999887
Q ss_pred CC
Q psy9352 138 SH 139 (146)
Q Consensus 138 ~~ 139 (146)
..
T Consensus 107 ~~ 108 (298)
T 3tb6_A 107 AS 108 (298)
T ss_dssp SC
T ss_pred cC
Confidence 53
No 81
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=73.17 E-value=15 Score=28.11 Aligned_cols=42 Identities=7% Similarity=0.004 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEE
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTW 107 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 107 (146)
+-+..+++-|+..|++.++..+++.+.+..|+++-.+..|+.
T Consensus 130 ~~~~~~~~lL~~~gip~i~ap~EADa~iA~La~~g~~~~i~S 171 (340)
T 1b43_A 130 MLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASAS 171 (340)
T ss_dssp HHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEEC
T ss_pred HHHHHHHHHHHHcCCcEEEcChhHHHHHHHHHHcCCEEEEEc
Confidence 456778888999999999999999999999998754554433
No 82
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=73.13 E-value=19 Score=24.65 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=46.1
Q ss_pred HHHHHHHHHHH----hcCCeEEEEECChhhHHHHHHHH--cCccEEEEeee-cChhHH-HHHHHHHHHHHhCCCeEEEec
Q psy9352 66 QSLADLDQKFR----ALGSRLYVVQGKPEEVFPDIFKT--WNIKLLTWEYD-IEPYAK-KRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 66 ~sL~~L~~~L~----~~g~~L~v~~g~~~~~l~~l~~~--~~~~~v~~~~~-~~~~~~-~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.+|.++.+.|+ ++|..+.+++.+.+..|-+.+.+ .+++.|+.|-- |+.... -|| +++. +...++++..++
T Consensus 29 ~Tl~di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrD-Al~~-l~~~~~P~VEVH 106 (151)
T 3u80_A 29 QDLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSYALAD-AAHM-VIDENLPLMEVH 106 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCCSCCHHHHH-HHHH-HHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHH-HHHH-HhhcCCCEEEEE
Confidence 34555555554 57999999998777555555443 24677888764 232333 233 3322 345678999988
Q ss_pred CCeeeeCC
Q psy9352 138 SHTLYNTN 145 (146)
Q Consensus 138 ~~~L~~p~ 145 (146)
-+.++..+
T Consensus 107 iSNi~aRE 114 (151)
T 3u80_A 107 ISNPSARD 114 (151)
T ss_dssp SSCCC---
T ss_pred cCCccccc
Confidence 77765443
No 83
>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A
Probab=72.31 E-value=5.4 Score=27.63 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCCe---EEEecC
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKVK---VEQHVS 138 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~---~~~~~~ 138 (146)
+.++-+.|++.|+++.+..+.+...+..+.+..++ +.++...+... .+..-..+..++++.|+. +..+.|
T Consensus 109 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~-~kp~~~~~~~~~~~lg~~~~~~i~vGD 185 (237)
T 4ex6_A 109 VLEGLDRLSAAGFRLAMATSKVEKAARAIAELTGLDTRLTVIAGDDSVER-GKPHPDMALHVARGLGIPPERCVVIGD 185 (237)
T ss_dssp HHHHHHHHHHTTEEEEEECSSCHHHHHHHHHHHTGGGTCSEEECTTTSSS-CTTSSHHHHHHHHHHTCCGGGEEEEES
T ss_pred HHHHHHHHHhCCCcEEEEcCCChHHHHHHHHHcCchhheeeEEeCCCCCC-CCCCHHHHHHHHHHcCCCHHHeEEEcC
Confidence 45666778888999999998888777788877664 55666544321 111122566666666663 444444
No 84
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure, structural genomics, NPPSFA; HET: MSE GOL; 1.73A {Thermotoga maritima MSB8} PDB: 3kbb_A*
Probab=72.29 E-value=5.9 Score=26.65 Aligned_cols=64 Identities=6% Similarity=0.122 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
++.++-+.|++.|.++.+..+.+.+.+..+.+..++ +.+++..+.... +..-..+..+++..|+
T Consensus 88 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~-kp~~~~~~~~~~~~~~ 155 (216)
T 2pib_A 88 GVREALEFVKSKRIKLALATSTPQREALERLRRLDLEKYFDVMVFGDQVKNG-KPDPEIYLLVLERLNV 155 (216)
T ss_dssp THHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGGGCSEEECGGGSSSC-TTSTHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHCCCCEEEEeCCcHHhHHHHHHhcChHHhcCEEeecccCCCC-CcCcHHHHHHHHHcCC
Confidence 455666778889999999999888888888888775 456665443221 1111256666666665
No 85
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=71.81 E-value=9 Score=24.74 Aligned_cols=47 Identities=9% Similarity=0.104 Sum_probs=21.1
Q ss_pred hHHHHHHHHcCcc-EEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCe
Q psy9352 91 EVFPDIFKTWNIK-LLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHT 140 (146)
Q Consensus 91 ~~l~~l~~~~~~~-~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~ 140 (146)
....++.++.++. -...+-+..+ ..++ .+.+......++...+++..
T Consensus 39 ~~ak~lL~~~gv~~~~~vdV~~d~--~~~~-~l~~~tg~~tvP~vfI~g~~ 86 (118)
T 2wem_A 39 NAVVQILRLHGVRDYAAYNVLDDP--ELRQ-GIKDYSNWPTIPQVYLNGEF 86 (118)
T ss_dssp HHHHHHHHHTTCCCCEEEESSSCH--HHHH-HHHHHHTCCSSCEEEETTEE
T ss_pred HHHHHHHHHcCCCCCEEEEcCCCH--HHHH-HHHHHhCCCCcCeEEECCEE
Confidence 3455666666663 3333322222 1222 33333333456666665544
No 86
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=71.40 E-value=16 Score=26.87 Aligned_cols=116 Identities=10% Similarity=0.068 Sum_probs=65.4
Q ss_pred CcHHHHHHHhcCCCCCCCceEEEEEEECCCccCC--CCCChh----hHHHHHHHHHHHHHHHHhc-----CCeE--EEEE
Q psy9352 20 DNPALLSAINYKNEKGQNILLKPLYILDPHFRKF--MRVGPN----RWRFLQQSLADLDQKFRAL-----GSRL--YVVQ 86 (146)
Q Consensus 20 DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~--~~~~~~----r~~Fl~~sL~~L~~~L~~~-----g~~L--~v~~ 86 (146)
...||..|+..+.. .+.++..+++.++..... ...... ...-..+.|.++.+.+++. |++. .+..
T Consensus 32 s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (309)
T 3cis_A 32 AQVAVRWAARDAEL--RKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQASLRAGPPTVHSEIVP 109 (309)
T ss_dssp HHHHHHHHHHHHHH--HTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCSCEEEEEES
T ss_pred HHHHHHHHHHHHHh--cCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhcccCCCceEEEEEec
Confidence 34577776654322 233499999988643210 011111 1112234566666667655 6654 5567
Q ss_pred CChhhHHHHHHHHcCccEEEEeeecC-hhH-HHHHHHHHHHHHhCCCeEEEecCC
Q psy9352 87 GKPEEVFPDIFKTWNIKLLTWEYDIE-PYA-KKRDGLVEDMAKEYKVKVEQHVSH 139 (146)
Q Consensus 87 g~~~~~l~~l~~~~~~~~v~~~~~~~-~~~-~~rd~~v~~~~~~~~i~~~~~~~~ 139 (146)
|++.+.|.+.++ +++.|++...-. ... .-.-....+.++..++++..+...
T Consensus 110 g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 162 (309)
T 3cis_A 110 AAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDE 162 (309)
T ss_dssp SCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEEECTT
T ss_pred CCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEEEcCC
Confidence 999999999886 789899865421 100 000113445566678888877643
No 87
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=71.38 E-value=15 Score=22.58 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEE-CChh---hHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCC
Q psy9352 66 QSLADLDQKFRALGSRLYVVQ-GKPE---EVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~-g~~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~ 130 (146)
|-+++.-++++..|-+|.++. |... ..|+.=+++.|++-=+. +...|.+..+ .++++++..|
T Consensus 38 qdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvl-kstdpeeltq--rvreflktag 103 (112)
T 2lnd_A 38 QDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVL-KSTDPEELTQ--RVREFLKTAG 103 (112)
T ss_dssp HHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEE-ECCCHHHHHH--HHHHHHHHTT
T ss_pred hhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhh-ccCCHHHHHH--HHHHHHHhcc
Confidence 567888889999999999886 4333 34555566667653333 2345665543 6888888776
No 88
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=71.23 E-value=16 Score=24.68 Aligned_cols=62 Identities=8% Similarity=0.067 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEECCh-hhHHHHHHHHcCccEEEEee-ec-ChhHHHHHHHHHHHHHhCCC
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKP-EEVFPDIFKTWNIKLLTWEY-DI-EPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~-~~~l~~l~~~~~~~~v~~~~-~~-~~~~~~rd~~v~~~~~~~~i 131 (146)
.++.++=+.|++.|+++.+..+.+ ...+..+.+..++...+-.. .. .+ .. ..+..++++.|+
T Consensus 71 ~g~~e~L~~L~~~G~~v~ivT~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~---k~-~~~~~~~~~~~~ 135 (187)
T 2wm8_A 71 PEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHREIYPGS---KI-THFERLQQKTGI 135 (187)
T ss_dssp TTHHHHHHHHHHHTCCEEEEECCSCHHHHHHHHHHTTCTTTEEEEEESSSC---HH-HHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHCCceEEEEeCCCChHHHHHHHHHcCcHhhcceeEEEeCc---hH-HHHHHHHHHcCC
Confidence 445555566777899999999988 57788888888876433221 11 22 11 245556666665
No 89
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}
Probab=71.10 E-value=17 Score=25.29 Aligned_cols=72 Identities=10% Similarity=0.010 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCCe---EEEecC
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKVK---VEQHVS 138 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~---~~~~~~ 138 (146)
.++.++=+.|++.|+++.+..+.+........+..++ +.+++..+.+.. +-.-..+..++++.|+. +..+.|
T Consensus 97 ~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~-Kp~~~~~~~~~~~~g~~~~~~i~iGD 175 (241)
T 2hoq_A 97 PGARKVLIRLKELGYELGIITDGNPVKQWEKILRLELDDFFEHVIISDFEGVK-KPHPKIFKKALKAFNVKPEEALMVGD 175 (241)
T ss_dssp TTHHHHHHHHHHHTCEEEEEECSCHHHHHHHHHHTTCGGGCSEEEEGGGGTCC-TTCHHHHHHHHHHHTCCGGGEEEEES
T ss_pred ccHHHHHHHHHHCCCEEEEEECCCchhHHHHHHHcCcHhhccEEEEeCCCCCC-CCCHHHHHHHHHHcCCCcccEEEECC
Confidence 3556666778888999999998877777777777775 566665544321 11112556666666653 444444
No 90
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=71.04 E-value=9.7 Score=31.93 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHH
Q psy9352 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127 (146)
Q Consensus 69 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~ 127 (146)
.+.-+.|++.|+++.+..|++......++++.|++.++++- .|..+. +.++++.+
T Consensus 463 ~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~lgi~~~~~~~--~P~~K~--~~v~~l~~ 517 (645)
T 3j08_A 463 KPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEV--LPHQKS--EEVKKLQA 517 (645)
T ss_dssp HHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECSC--CTTCHH--HHHHHHTT
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEeC--CHHhHH--HHHHHHhh
Confidence 34445667789999999999999999999999999998854 444332 24555543
No 91
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6
Probab=70.84 E-value=8.5 Score=27.17 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
+.++=+.|++.|+++.++.+.+...+..+.+..++ +.++...+... .+..-..+..++++.|+
T Consensus 119 ~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~-~Kp~~~~~~~~~~~~~~ 185 (243)
T 2hsz_A 119 VKETLEALKAQGYILAVVTNKPTKHVQPILTAFGIDHLFSEMLGGQSLPE-IKPHPAPFYYLCGKFGL 185 (243)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGGGCSEEECTTTSSS-CTTSSHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHcCchheEEEEEecccCCC-CCcCHHHHHHHHHHhCc
Confidence 45555668888999999998888777888888774 45554433211 11111245555555554
No 92
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=70.56 E-value=17 Score=27.97 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
.|..+-+..+++.+++.|..+.+...+......+.+...+++.|++. ... ..+.+.+.+.||++..++.
T Consensus 37 ~f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~~~vDGiIi~--~~~------~~~~~~l~~~~iPvV~i~~ 105 (412)
T 4fe7_A 37 AYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIAD--FDD------KQIEQALADVDVPIVGVGG 105 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECC-CC--------CCCSEEEEE--TTC------HHHHHHHTTCCSCEEEEEE
T ss_pred hhhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhHhcCCCCEEEEe--cCC------hHHHHHHhhCCCCEEEecC
Confidence 46777788888899999999988875544333445556789999983 111 1344556678999998864
No 93
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}
Probab=69.66 E-value=10 Score=26.53 Aligned_cols=63 Identities=22% Similarity=0.236 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcC---ccEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWN---IKLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~---~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
+.++-+.|++.|+++.+..+.+.+.+..+.+..+ ++.++...+... .+-.-..+..++++.|+
T Consensus 115 ~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~f~~~~~~~~~~~-~Kp~p~~~~~~~~~l~~ 180 (240)
T 2hi0_A 115 ILDLMKNLRQKGVKLAVVSNKPNEAVQVLVEELFPGSFDFALGEKSGIR-RKPAPDMTSECVKVLGV 180 (240)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHSTTTCSEEEEECTTSC-CTTSSHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCcceeEEEecCCCCC-CCCCHHHHHHHHHHcCC
Confidence 4455566788899998888777666666666655 456666544321 11111245555555555
No 94
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=69.46 E-value=28 Score=24.91 Aligned_cols=72 Identities=7% Similarity=-0.042 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChhhH--HHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG--KPEEV--FPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~~--l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.|+.+-+..+++.+++.|..+.+... ++... +.+.+...+++.|++...... + ...+.+.+.||++..++
T Consensus 21 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-----~-~~~~~~~~~~iPvV~~~ 94 (291)
T 3egc_A 21 VFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEGE-----H-DYLRTELPKTFPIVAVN 94 (291)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSSC-----C-HHHHHSSCTTSCEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC-----h-HHHHHhhccCCCEEEEe
Confidence 47777888899999999999998874 33321 223344568998887543221 1 23344566899999887
Q ss_pred CC
Q psy9352 138 SH 139 (146)
Q Consensus 138 ~~ 139 (146)
..
T Consensus 95 ~~ 96 (291)
T 3egc_A 95 RE 96 (291)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 95
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Probab=69.16 E-value=21 Score=23.83 Aligned_cols=73 Identities=12% Similarity=0.055 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecC-------------hhHHHHHHHHHHHHHhCCCe-
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIE-------------PYAKKRDGLVEDMAKEYKVK- 132 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~-------------~~~~~rd~~v~~~~~~~~i~- 132 (146)
...++-+.|++.|+.+.+..|.+......+.+..+.+.++.+.-.. +.....-..+..++++.|+.
T Consensus 80 ~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~lgi~~ 159 (211)
T 1l7m_A 80 GAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINL 159 (211)
T ss_dssp THHHHHHHHHHTTEEEEEEEEEEHHHHHHHHHHHTCSEEEEEEEEEETTEEEEEEECSSCSTTHHHHHHHHHHHHHTCCG
T ss_pred cHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCeEEEeeeEEECCEEcCCcccCccCCccHHHHHHHHHHHcCCCH
Confidence 4556666777889999999988777667777777777654331100 00112234777788777774
Q ss_pred --EEEecCC
Q psy9352 133 --VEQHVSH 139 (146)
Q Consensus 133 --~~~~~~~ 139 (146)
+..+.|+
T Consensus 160 ~~~~~iGD~ 168 (211)
T 1l7m_A 160 EDTVAVGDG 168 (211)
T ss_dssp GGEEEEECS
T ss_pred HHEEEEecC
Confidence 5555544
No 96
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=68.93 E-value=21 Score=23.27 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=27.2
Q ss_pred EEECChhhHHHHHHHH---cCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 84 VVQGKPEEVFPDIFKT---WNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 84 v~~g~~~~~l~~l~~~---~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
++..+| +++.+++.+ .|+..|..-.+.. +.+|...+.++ .+.|+.+.++.+
T Consensus 7 vfssdp-eilkeivreikrqgvrvvllysdqd--ekrrrerleef-ekqgvdvrtved 60 (162)
T 2l82_A 7 VFSSDP-EILKEIVREIKRQGVRVVLLYSDQD--EKRRRERLEEF-EKQGVDVRTVED 60 (162)
T ss_dssp EEESCH-HHHHHHHHHHHHTTCEEEEEECCSC--HHHHHHHHHHH-HTTTCEEEECCS
T ss_pred EecCCH-HHHHHHHHHHHhCCeEEEEEecCch--HHHHHHHHHHH-HHcCCceeeecc
Confidence 344444 566666544 4665555533332 44444355443 567777777655
No 97
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}
Probab=68.61 E-value=15 Score=24.59 Aligned_cols=65 Identities=8% Similarity=0.063 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
..++.++=+.|++.| ++.+..+.+...+..+.+..++ +.++...+.+..--.. ..+..++++.|+
T Consensus 88 ~~~~~~~l~~l~~~g-~~~i~s~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~Kp~~-~~~~~~~~~~~~ 156 (200)
T 3cnh_A 88 RPEVLALARDLGQRY-RMYSLNNEGRDLNEYRIRTFGLGEFLLAFFTSSALGVMKPNP-AMYRLGLTLAQV 156 (200)
T ss_dssp CHHHHHHHHHHTTTS-EEEEEECCCHHHHHHHHHHHTGGGTCSCEEEHHHHSCCTTCH-HHHHHHHHHHTC
T ss_pred CccHHHHHHHHHHcC-CEEEEeCCcHHHHHHHHHhCCHHHhcceEEeecccCCCCCCH-HHHHHHHHHcCC
Confidence 356777777888899 9999998888777777777664 5566654432111111 245556666565
No 98
>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}
Probab=67.91 E-value=9.6 Score=26.16 Aligned_cols=64 Identities=9% Similarity=0.107 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
++.++-+.|++.|+++.+..+.+...+..+.+..++ +.++...+....--. -..+..+++..|+
T Consensus 103 ~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~-~~~~~~~~~~~~~ 170 (233)
T 3umb_A 103 ENVPVLRQLREMGLPLGILSNGNPQMLEIAVKSAGMSGLFDHVLSVDAVRLYKTA-PAAYALAPRAFGV 170 (233)
T ss_dssp THHHHHHHHHTTTCCEEEEESSCHHHHHHHHHTTTCTTTCSEEEEGGGTTCCTTS-HHHHTHHHHHHTS
T ss_pred CHHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHHCCcHhhcCEEEEecccCCCCcC-HHHHHHHHHHhCC
Confidence 456666788889999999999888888888877764 566666544321111 1145555555554
No 99
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=67.75 E-value=25 Score=23.71 Aligned_cols=87 Identities=13% Similarity=0.045 Sum_probs=56.0
Q ss_pred EEEEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEE-------------CChhhHHHHHHHHcCccEEE
Q psy9352 40 LKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQ-------------GKPEEVFPDIFKTWNIKLLT 106 (146)
Q Consensus 40 l~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~-------------g~~~~~l~~l~~~~~~~~v~ 106 (146)
++|-|++++-+... ..+..+-+.=++-|..|++.-++.++++.+.. |+....+-+++.+.++ ++
T Consensus 33 iIP~~Vl~EL~~~a-~~~r~~GrrGLe~L~~L~~~~~~~~i~vei~~~r~~~~~i~~~~~~~vD~~l~~lA~~~~a--~l 109 (142)
T 3i8o_A 33 IIPEAVVSELEYQA-NMGREIGYKGIEELRKLIEKASEHNIKVEYYGERPTREEIFLAKSGEIDAMIRKVAKETNS--IL 109 (142)
T ss_dssp EEEHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHTTCCEEEESCCCCHHHHHSCCSSSHHHHHHHHHHHTTC--EE
T ss_pred EehHHHHHHHHHHH-HccchhhHHHHHHHHHHHHHhhccCceEEEecccCchhhhccccCCcHHHHHHHHHHHhCC--EE
Confidence 67888887633222 12334444555667777665566789988764 3456678899999876 44
Q ss_pred EeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 107 WEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 107 ~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
++.|+ .+.+.++..||++.....
T Consensus 110 vTnD~---------~l~kvA~~~GI~V~~l~~ 132 (142)
T 3i8o_A 110 LTSDW---------IQYNLAKAQGIEAYFLEA 132 (142)
T ss_dssp EESCH---------HHHHHHHHTTCCEEECCC
T ss_pred EcCCH---------HHHHHHHHcCCEEEEecc
Confidence 44444 355556778999887654
No 100
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=67.69 E-value=13 Score=22.37 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=28.7
Q ss_pred HHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 94 PDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 94 ~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
.+.+++-.+.-|+...+.+|. .-..+...|++.+|++..+.+
T Consensus 20 ~kai~~gkaklViiA~D~~~~---~~~~i~~lc~~~~Ip~~~v~s 61 (82)
T 3v7e_A 20 VKALKRGSVKEVVVAKDADPI---LTSSVVSLAEDQGISVSMVES 61 (82)
T ss_dssp HHHHTTTCEEEEEEETTSCHH---HHHHHHHHHHHHTCCEEEESC
T ss_pred HHHHHcCCeeEEEEeCCCCHH---HHHHHHHHHHHcCCCEEEECC
Confidence 345555677778887777762 233677778888888887764
No 101
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}
Probab=67.30 E-value=9.8 Score=26.00 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCCe
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKVK 132 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~ 132 (146)
++.++-+.|++.|+++.++.+.+.+.+..+.+..++ +.++...+... .+-.-..+..++++.|++
T Consensus 95 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~-~kp~~~~~~~~~~~l~~~ 163 (233)
T 3s6j_A 95 GAVELLETLDKENLKWCIATSGGIDTATINLKALKLDINKINIVTRDDVSY-GKPDPDLFLAAAKKIGAP 163 (233)
T ss_dssp THHHHHHHHHHTTCCEEEECSSCHHHHHHHHHTTTCCTTSSCEECGGGSSC-CTTSTHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHCCCeEEEEeCCchhhHHHHHHhcchhhhhheeeccccCCC-CCCChHHHHHHHHHhCCC
Confidence 455666778889999999998888777888887665 45555544331 111122566777777763
No 102
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=67.30 E-value=31 Score=24.59 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=44.1
Q ss_pred HHHHhcCCeEEEEECChhhHHHHHHHHcCccE----EE---------------EeeecChhHHHHHHHHHHHHHhCCCeE
Q psy9352 73 QKFRALGSRLYVVQGKPEEVFPDIFKTWNIKL----LT---------------WEYDIEPYAKKRDGLVEDMAKEYKVKV 133 (146)
Q Consensus 73 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~----v~---------------~~~~~~~~~~~rd~~v~~~~~~~~i~~ 133 (146)
++|.+.|+.+.+..|.+...+..+.+..+... ++ ...... .+.-+.+.+.+++.++.+
T Consensus 32 ~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~i~~nGai~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~ 108 (279)
T 3mpo_A 32 QAAKAQGIKVVLCTGRPLTGVQPYLDAMDIDGDDQYAITFNGSVAQTISGKVLTNHSLT---YEDYIDLEAWARKVRAHF 108 (279)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHHHTTCCSSSCEEEEGGGTEEEETTSCEEEECCCC---HHHHHHHHHHHHHTTCCE
T ss_pred HHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCCCEEEEcCcEEEECCCCCEEEecCCC---HHHHHHHHHHHHHcCCeE
Confidence 44567899999999999988888888876531 11 111112 222235666777888888
Q ss_pred EEecCCeee
Q psy9352 134 EQHVSHTLY 142 (146)
Q Consensus 134 ~~~~~~~L~ 142 (146)
..+.+...+
T Consensus 109 ~~~~~~~~~ 117 (279)
T 3mpo_A 109 QIETPDYIY 117 (279)
T ss_dssp EEECSSCEE
T ss_pred EEEECCEEE
Confidence 877665544
No 103
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=66.90 E-value=19 Score=23.58 Aligned_cols=54 Identities=22% Similarity=0.222 Sum_probs=37.6
Q ss_pred eEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCC
Q psy9352 81 RLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSH 139 (146)
Q Consensus 81 ~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~ 139 (146)
.+.|..|+..+++...++-.++..|+.+....|.+ .+.+.+++.||++...+.+
T Consensus 54 ~l~I~~G~r~~~~l~a~~~~~~~~iIlt~g~~~~~-----~i~~~A~~~~ipvl~t~~~ 107 (139)
T 2ioj_A 54 AALVTGGDRSDLLLTALEMPNVRCLILTGNLEPVQ-----LVLTKAEERGVPVILTGHD 107 (139)
T ss_dssp EEEEEETTCHHHHHHHTTCTTEEEEEEETTCCCCH-----HHHHHHHHHTCCEEECSSC
T ss_pred EEEEEcCCHHHHHHHHHhCCCCcEEEEcCCCCCCH-----HHHHHHHHCCCeEEEECCC
Confidence 67777798888765554425788888887776642 4556667788988877654
No 104
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10
Probab=66.76 E-value=33 Score=24.62 Aligned_cols=74 Identities=11% Similarity=0.114 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccE----------EEE-eeec---ChhHHHHHHHHHHHHHhCCCe
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKL----------LTW-EYDI---EPYAKKRDGLVEDMAKEYKVK 132 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~----------v~~-~~~~---~~~~~~rd~~v~~~~~~~~i~ 132 (146)
....|++ ++.|+.+.+..|.+...+..+.++.+.+. |+. +... .+...+.-+.+.+.+++.++.
T Consensus 24 ~~~al~~--~~~Gi~v~iaTGR~~~~~~~~~~~l~~~~~~~I~~NGa~i~~~~~~~i~~~~l~~~~~~~i~~~~~~~~~~ 101 (268)
T 1nf2_A 24 DRRNIEK--LSRKCYVVFASGRMLVSTLNVEKKYFKRTFPTIAYNGAIVYLPEEGVILNEKIPPEVAKDIIEYIKPLNVH 101 (268)
T ss_dssp HHHHHHH--HTTTSEEEEECSSCHHHHHHHHHHHSSSCCCEEEGGGTEEEETTTEEEEECCBCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHH--HhCCCEEEEECCCChHHHHHHHHHhCCCCCeEEEeCCeEEECCCCCEEEecCCCHHHHHHHHHHHHhCCCE
Confidence 3445555 57899999999999888888888877653 332 1111 111122223566667777887
Q ss_pred EEEecCCeee
Q psy9352 133 VEQHVSHTLY 142 (146)
Q Consensus 133 ~~~~~~~~L~ 142 (146)
+..+.+...+
T Consensus 102 ~~~~~~~~~~ 111 (268)
T 1nf2_A 102 WQAYIDDVLY 111 (268)
T ss_dssp EEEECSSCEE
T ss_pred EEEEECCEEE
Confidence 7776555443
No 105
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=66.58 E-value=32 Score=24.51 Aligned_cols=73 Identities=11% Similarity=0.001 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC--hh---hHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQGK--PE---EVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~--~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
.|+.+-+..+++.+++.|..+.+...+ +. +.+..+. ..+++.|++..... ... . ...+.+.+.||++..+
T Consensus 21 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~-~~~--~-~~~~~~~~~~iPvV~~ 95 (293)
T 3l6u_A 21 EFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFV-HLKVDAIFITTLDD-VYI--G-SAIEEAKKAGIPVFAI 95 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHH-HTTCSEEEEECSCT-TTT--H-HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHH-HcCCCEEEEecCCh-HHH--H-HHHHHHHHcCCCEEEe
Confidence 477778888999999999999988743 33 2333333 46889888853222 111 1 2333455689999988
Q ss_pred cCC
Q psy9352 137 VSH 139 (146)
Q Consensus 137 ~~~ 139 (146)
+..
T Consensus 96 ~~~ 98 (293)
T 3l6u_A 96 DRM 98 (293)
T ss_dssp SSC
T ss_pred cCC
Confidence 654
No 106
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=66.39 E-value=9.1 Score=26.16 Aligned_cols=64 Identities=5% Similarity=0.125 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
++.++-+.|++.|+++.+..+.+........+..+. +.+++..+.+..--..+ .+..++++.|+
T Consensus 88 g~~~~l~~L~~~g~~~~i~tn~~~~~~~~~l~~~~l~~~fd~~~~~~~~~~~KP~p~-~~~~a~~~lg~ 155 (216)
T 3kbb_A 88 GVREALEFVKSKRIKLALATSTPQREALERLRRLDLEKYFDVMVFGDQVKNGKPDPE-IYLLVLERLNV 155 (216)
T ss_dssp THHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGGGCSEEECGGGSSSCTTSTH-HHHHHHHHHTC
T ss_pred cHHHHHHHHHHcCCCcccccCCcHHHHHHHHHhcCCCccccccccccccCCCcccHH-HHHHHHHhhCC
Confidence 356677788899999999998888777777777765 56666555432111112 45555665565
No 107
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=66.19 E-value=15 Score=24.09 Aligned_cols=45 Identities=9% Similarity=0.058 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEE
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTW 107 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 107 (146)
-.+..|.++.+++++.|..++.+.-+..+.+.+++++++++--+.
T Consensus 53 ~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~ 97 (163)
T 3gkn_A 53 TEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLV 97 (163)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEE
Confidence 446789999999999999999998888888999999988764444
No 108
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=66.02 E-value=18 Score=30.74 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHH
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~ 127 (146)
+.-+.|++.|+.+.+..|+.......++++.|++.++++- .|..+ -+.++++.+
T Consensus 542 ~~i~~l~~~Gi~v~~~TGd~~~~a~~ia~~lgi~~~~~~~--~P~~K--~~~v~~l~~ 595 (723)
T 3j09_A 542 PAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEV--LPHQK--SEEVKKLQA 595 (723)
T ss_dssp HHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECSC--CTTCH--HHHHHHHTT
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCcEEEccC--CHHHH--HHHHHHHhc
Confidence 3445566789999999999999999999999999998854 44433 224555543
No 109
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*
Probab=65.98 E-value=12 Score=25.34 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc------cEEEEeeecChhHHHHHHHHHHHHHhCCCe
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI------KLLTWEYDIEPYAKKRDGLVEDMAKEYKVK 132 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~------~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~ 132 (146)
++.++-+.|++.|+++.++.+.+...+..+.+..++ +.++... .. ..+-.-..+..++++.|+.
T Consensus 74 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~i~~~~-~~-~~kp~~~~~~~~~~~~g~~ 143 (205)
T 3m9l_A 74 GAVELVRELAGRGYRLGILTRNARELAHVTLEAIGLADCFAEADVLGRD-EA-PPKPHPGGLLKLAEAWDVS 143 (205)
T ss_dssp THHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGGGSCGGGEECTT-TS-CCTTSSHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHhcCCeEEEEeCCchHHHHHHHHHcCchhhcCcceEEeCC-CC-CCCCCHHHHHHHHHHcCCC
Confidence 455666778889999999999888888888888776 3344322 21 1111122566677777763
No 110
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}
Probab=65.35 E-value=18 Score=24.58 Aligned_cols=66 Identities=11% Similarity=0.199 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEECCh---hhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCCe
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKP---EEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKVK 132 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~---~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~ 132 (146)
..+.++-+.|++.|+++.+..+.+ ...+....+..++ +.+++..+.....-.. ..+..++++.|++
T Consensus 102 ~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~-~~~~~~~~~lgi~ 174 (235)
T 2om6_A 102 EGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLMEFIDKTFFADEVLSYKPRK-EMFEKVLNSFEVK 174 (235)
T ss_dssp TTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCGGGCSEEEEHHHHTCCTTCH-HHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHCCCEEEEEcCCcccchhHHHHHHHhCCcHHHhhhheeccccCCCCCCH-HHHHHHHHHcCCC
Confidence 345566667788899999998877 6666777777664 5666654432111111 2566677777763
No 111
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=64.48 E-value=33 Score=24.67 Aligned_cols=72 Identities=11% Similarity=0.027 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEE---CChhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQ---GKPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~---g~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
|+.+-+..+++.+++.|..+.+.. +++.. .+..+. ..+++.|++.-.... .. +..+ +.+.+.||++..+
T Consensus 18 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~-~~--~~~~-~~~~~~~iPvV~~ 92 (305)
T 3g1w_A 18 YWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAI-AKNPAGIAISAIDPV-EL--TDTI-NKAVDAGIPIVLF 92 (305)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHH-HHCCSEEEECCSSTT-TT--HHHH-HHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHH-HhCCCEEEEcCCCHH-HH--HHHH-HHHHHCCCcEEEE
Confidence 667778888899999999998843 34433 233333 358998887532221 11 1133 3345689999988
Q ss_pred cCC
Q psy9352 137 VSH 139 (146)
Q Consensus 137 ~~~ 139 (146)
+..
T Consensus 93 ~~~ 95 (305)
T 3g1w_A 93 DSG 95 (305)
T ss_dssp SSC
T ss_pred CCC
Confidence 753
No 112
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}
Probab=64.47 E-value=11 Score=25.92 Aligned_cols=66 Identities=11% Similarity=0.216 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcC----ccEEEEeeecChhHHHHHHHHHHHHHhCCCeE
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWN----IKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKV 133 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~----~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~ 133 (146)
.++.++=+.|++.|+++.+..+.+.. +....+..+ ++.+++..+.+.. +-.-..+..++++.|+.-
T Consensus 98 ~~~~~~l~~l~~~g~~~~i~Tn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~-Kp~~~~~~~~~~~~~~~~ 167 (220)
T 2zg6_A 98 DDTLEFLEGLKSNGYKLALVSNASPR-VKTLLEKFDLKKYFDALALSYEIKAV-KPNPKIFGFALAKVGYPA 167 (220)
T ss_dssp TTHHHHHHHHHTTTCEEEECCSCHHH-HHHHHHHHTCGGGCSEEC------------CCHHHHHHHHHCSSE
T ss_pred cCHHHHHHHHHHCCCEEEEEeCCcHH-HHHHHHhcCcHhHeeEEEeccccCCC-CCCHHHHHHHHHHcCCCe
Confidence 34556666788889999999887764 567777777 4567665544311 111124555666667654
No 113
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=64.37 E-value=35 Score=24.09 Aligned_cols=65 Identities=9% Similarity=0.100 Sum_probs=40.5
Q ss_pred HHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEE--------------eeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 73 QKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTW--------------EYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 73 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~--------------~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
++|++.|+.+.+..|.+...+..+.++.+.+.+++ ... -+. +.-+.+.+.+++.++.+..+.+
T Consensus 30 ~~l~~~G~~~~~aTGR~~~~~~~~~~~l~~~~~i~~nGa~i~~~~~~i~~~~-~~~--~~~~~i~~~~~~~~~~~~~~~~ 106 (258)
T 2pq0_A 30 RRLKQSGVYVAIATGRAPFMFEHVRKQLGIDSFVSFNGQYVVFEGNVLYKQP-LRR--EKVRALTEEAHKNGHPLVFMDA 106 (258)
T ss_dssp HHHHHTTCEEEEECSSCGGGSHHHHHHHTCCCEEEGGGTEEEETTEEEEECC-CCH--HHHHHHHHHHHHTTCCEEEECS
T ss_pred HHHHHCCCEEEEECCCChHHHHHHHHhcCCCEEEECCCCEEEECCEEEEEec-CCH--HHHHHHHHHHHhCCCeEEEEeC
Confidence 34556799999999998877777777766543221 111 122 2223566667778888777654
Q ss_pred Ce
Q psy9352 139 HT 140 (146)
Q Consensus 139 ~~ 140 (146)
..
T Consensus 107 ~~ 108 (258)
T 2pq0_A 107 EK 108 (258)
T ss_dssp SC
T ss_pred Cc
Confidence 44
No 114
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}
Probab=64.23 E-value=18 Score=24.41 Aligned_cols=65 Identities=12% Similarity=0.193 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHH------cCc----cEEEEeeecChhHHHHHHHHHHHHHhCCCe
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT------WNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKVK 132 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~------~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~ 132 (146)
.++.++=+.|++ |+++.++.+.+...+..+.+. .++ +.+++..+.+..--. -..+..++++.|+.
T Consensus 92 ~~~~~~l~~l~~-g~~~~i~t~~~~~~~~~~~~~l~~~~~~~l~~~f~~~~~~~~~~~~Kp~-~~~~~~~~~~~~~~ 166 (211)
T 2i6x_A 92 AEKFDYIDSLRP-DYRLFLLSNTNPYVLDLAMSPRFLPSGRTLDSFFDKVYASCQMGKYKPN-EDIFLEMIADSGMK 166 (211)
T ss_dssp HHHHHHHHHHTT-TSEEEEEECCCHHHHHHHTSTTSSTTCCCGGGGSSEEEEHHHHTCCTTS-HHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHc-CCeEEEEeCCCHHHHHHHHhhhccccccCHHHHcCeEEeecccCCCCCC-HHHHHHHHHHhCCC
Confidence 456666667777 999999998887777777766 563 567765543211111 12455666666653
No 115
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=63.89 E-value=34 Score=23.79 Aligned_cols=65 Identities=9% Similarity=0.030 Sum_probs=44.5
Q ss_pred HhcCCeEEEEECChhhHHHHHHHH---cCccEEEEeeec-ChhHHHHHHHHHHHHHhCCCeEEEecCCeeeeC
Q psy9352 76 RALGSRLYVVQGKPEEVFPDIFKT---WNIKLLTWEYDI-EPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNT 144 (146)
Q Consensus 76 ~~~g~~L~v~~g~~~~~l~~l~~~---~~~~~v~~~~~~-~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~p 144 (146)
.++|+.+.+++.+.+..|-+.+.+ .+++.|+.|--. +.... +++.++...++++..++-+.++..
T Consensus 55 ~~~g~~v~~~QSN~EGeLId~Ih~A~~~~~dgIIINpgAyTHtSv----AlrDAL~~v~~P~VEVHiSNihaR 123 (167)
T 3kip_A 55 KNNDSEVLVFQSNTEGFIIDRIHEAKRQGVGFVVINAGAYTHTSV----GIRDALLGTAIPFIEVHITNVHQR 123 (167)
T ss_dssp TCSSCEEEEEECSCHHHHHHHHHHHHHTTCCEEEEECGGGGGTCH----HHHHHHHHTTCCEEEEESSCGGGS
T ss_pred ccCCcEEEEEecCCHHHHHHHHHHhhhcCccEEEEccccceeccH----HHHHHHHhcCCCEEEEEcCCcccc
Confidence 457899999998877665555544 358889998642 32222 566666677899999987766544
No 116
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=63.47 E-value=40 Score=24.52 Aligned_cols=72 Identities=11% Similarity=-0.026 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC--Chhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQG--KPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
|+.+-+..+++.++++|..+.+... ++.. .+..+.. .+++.|++.-.. +... + ...+.+.+.||++..++
T Consensus 17 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~-~~vdgiIi~~~~-~~~~--~-~~~~~~~~~giPvV~~~ 91 (330)
T 3uug_A 17 RWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVT-KGVKVLVIASID-GTTL--S-DVLKQAGEQGIKVIAYD 91 (330)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-HTCSEEEECCSS-GGGG--H-HHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHH-cCCCEEEEEcCC-chhH--H-HHHHHHHHCCCCEEEEC
Confidence 7777788899999999999988763 3332 3444444 479998885322 1111 1 23344567899999887
Q ss_pred CC
Q psy9352 138 SH 139 (146)
Q Consensus 138 ~~ 139 (146)
..
T Consensus 92 ~~ 93 (330)
T 3uug_A 92 RL 93 (330)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 117
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=62.93 E-value=37 Score=23.98 Aligned_cols=71 Identities=8% Similarity=0.054 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC--hhh--HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQGK--PEE--VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~--~~~--~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.|+.+-+..+++.+++.|..+.+...+ +.. .+.+.+...+++.|++.. .. +..+...+.+.|+++..++
T Consensus 21 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~---~~----~~~~~~~l~~~~iPvV~~~ 93 (277)
T 3e61_A 21 PFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA---FN----ENIIENTLTDHHIPFVFID 93 (277)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG---GG----HHHHHHHHHHC-CCEEEGG
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec---CC----hHHHHHHHHcCCCCEEEEe
Confidence 477788888999999999999888643 222 223334456899999843 11 1133315667899999887
Q ss_pred CC
Q psy9352 138 SH 139 (146)
Q Consensus 138 ~~ 139 (146)
..
T Consensus 94 ~~ 95 (277)
T 3e61_A 94 RI 95 (277)
T ss_dssp GC
T ss_pred cc
Confidence 54
No 118
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=62.87 E-value=28 Score=24.65 Aligned_cols=67 Identities=7% Similarity=0.043 Sum_probs=42.8
Q ss_pred HHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEE--------------eeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 73 QKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTW--------------EYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 73 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~--------------~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
++|.+.|+.+.+..|.+...+..+.++.+.+.+++ .....+ +.-..+.+.+++.++.+..+..
T Consensus 32 ~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~~~~~~l~~---~~~~~i~~~~~~~~~~~~~~~~ 108 (274)
T 3fzq_A 32 RLCQKNHCSVVICTGRSMGTIQDDVLSLGVDGYIAGGGNYIQYHGELLYNQSFNQ---RLIKEVVCLLKKREVAFSIESQ 108 (274)
T ss_dssp HHHHHTTCEEEEECSSCTTTSCHHHHTTCCSEEEETTTTEEEETTEEEEECCCCH---HHHHHHHHHHHHHTCEEEEECS
T ss_pred HHHHHCCCEEEEEeCCChHHHHHHHHHcCCCEEEecCccEEEECCEEEEEcCCCH---HHHHHHHHHHHHCCceEEEEeC
Confidence 34466799999999998877778887776654322 111122 2223566677778888877665
Q ss_pred Ceee
Q psy9352 139 HTLY 142 (146)
Q Consensus 139 ~~L~ 142 (146)
..++
T Consensus 109 ~~~~ 112 (274)
T 3fzq_A 109 EKVF 112 (274)
T ss_dssp SCEE
T ss_pred CceE
Confidence 5544
No 119
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=62.78 E-value=29 Score=22.71 Aligned_cols=68 Identities=9% Similarity=-0.020 Sum_probs=44.1
Q ss_pred HHHHhcCCeEEEE-ECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCC---CeEEEecCCeee
Q psy9352 73 QKFRALGSRLYVV-QGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK---VKVEQHVSHTLY 142 (146)
Q Consensus 73 ~~L~~~g~~L~v~-~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~---i~~~~~~~~~L~ 142 (146)
.-|+..|.+.+-+ ...|.+.+.+.+.+.+++.|..+...++....-. .+.+.+++.| +++. +.|..++
T Consensus 25 ~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~-~~i~~l~~~g~~~i~v~-vGG~~~~ 96 (137)
T 1ccw_A 25 HAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQGEIDCK-GLRQKCDEAGLEGILLY-VGGNIVV 96 (137)
T ss_dssp HHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTHHHHHT-THHHHHHHTTCTTCEEE-EEESCSS
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecCcCcHHHHH-HHHHHHHhcCCCCCEEE-EECCCcC
Confidence 4456678887644 4567778888899999999999887776554433 4555565554 4443 3444333
No 120
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=62.77 E-value=41 Score=24.36 Aligned_cols=72 Identities=17% Similarity=0.090 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC--Chhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQG--KPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
|+.+-+..+++.+++.|..+.+... ++.. .+..+ ...+++.|++..... ... . ...+.+.+.||++..++
T Consensus 16 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l-~~~~vdgiIi~~~~~-~~~--~-~~~~~~~~~~iPvV~~~ 90 (313)
T 3m9w_A 16 RWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENM-INRGVDVLVIIPYNG-QVL--S-NVVKEAKQEGIKVLAYD 90 (313)
T ss_dssp TTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHH-HHTTCSEEEEECSST-TSC--H-HHHHHHHTTTCEEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEEeCCCh-hhh--H-HHHHHHHHCCCeEEEEC
Confidence 5556677788888999999988864 3332 33333 345899888754322 111 1 23334567899999887
Q ss_pred CC
Q psy9352 138 SH 139 (146)
Q Consensus 138 ~~ 139 (146)
..
T Consensus 91 ~~ 92 (313)
T 3m9w_A 91 RM 92 (313)
T ss_dssp SC
T ss_pred Cc
Confidence 53
No 121
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=62.69 E-value=33 Score=23.24 Aligned_cols=73 Identities=19% Similarity=0.160 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCeEEEEECChhhHHHHHHHHc--CccEEEEeee-cChhHHHHHHHHHHHHHhCCCeEEEecCCeeeeCC
Q psy9352 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW--NIKLLTWEYD-IEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145 (146)
Q Consensus 69 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~--~~~~v~~~~~-~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~p~ 145 (146)
..+++..+++|..+.+++.+.+..|-+.+.+. +++.|+.|-- |+.... +++.+++.-++++..++-+.++..+
T Consensus 32 ~~l~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE 107 (143)
T 1gqo_A 32 TDLFQFAEALHIQLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSY----AIRDAVSSISLPVVEVHLSNLYARE 107 (143)
T ss_dssp HHHHHHHHHHTCEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCH----HHHHHHHTSCSCEEEEESSCGGGSC
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEEccchhccccH----HHHHHHHhCCCCEEEEEecCccccc
Confidence 33444445679999999988876655555442 5788999864 232322 5677777788999999877766543
No 122
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=62.45 E-value=34 Score=23.28 Aligned_cols=73 Identities=12% Similarity=0.096 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCeEEEEECChhhHHHHHHHHc--CccEEEEeee-cChhHHHHHHHHHHHHHhCCCeEEEecCCeeeeCC
Q psy9352 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW--NIKLLTWEYD-IEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145 (146)
Q Consensus 69 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~--~~~~v~~~~~-~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~p~ 145 (146)
..+++..+++|..+.+++.+.+..|-+.+.+. +++.|+.|-- |+.... +++.+++.-++++..++-+.++..+
T Consensus 34 ~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE 109 (146)
T 1h05_A 34 ALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSV----ALRDACAELSAPLIEVHISNVHARE 109 (146)
T ss_dssp HHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCH----HHHHHHHTCCSCEEEEESSCGGGSC
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccH----HHHHHHHhCCCCEEEEEecCccccc
Confidence 33444445779999999987775555544432 3678888764 233322 5777777889999999877766543
No 123
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=62.37 E-value=15 Score=24.93 Aligned_cols=44 Identities=7% Similarity=-0.000 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEE
Q psy9352 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTW 107 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 107 (146)
-+..|.++.+++++.|..++.+..++.+.+.+++++++++--+.
T Consensus 70 el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l 113 (179)
T 3ixr_A 70 EGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLV 113 (179)
T ss_dssp HHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEE
Confidence 35678999999999999999898888888999999988764444
No 124
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=62.34 E-value=10 Score=27.97 Aligned_cols=43 Identities=7% Similarity=0.244 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCcc----EEEEee
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIK----LLTWEY 109 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~----~v~~~~ 109 (146)
+..++-+.|++.|++++++.|+....+..++++.++. .|+.|.
T Consensus 145 g~~e~i~~l~~~gi~v~ivSgg~~~~i~~i~~~~g~~~~~~~i~~n~ 191 (297)
T 4fe3_A 145 GYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHSNVKVVSNF 191 (297)
T ss_dssp THHHHHHHHHHTTCCEEEEEEEEHHHHHHHHHHTTCCCTTEEEEEEC
T ss_pred cHHHHHHHHHHcCCeEEEEeCCcHHHHHHHHHHcCCCcccceEEeee
Confidence 4567778889999999999999999999999998764 466654
No 125
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=62.24 E-value=16 Score=23.06 Aligned_cols=48 Identities=8% Similarity=0.065 Sum_probs=28.2
Q ss_pred hHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCee
Q psy9352 91 EVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTL 141 (146)
Q Consensus 91 ~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L 141 (146)
....++.++.++.-...+-+..+ ..++ .+.+......++...+++..+
T Consensus 35 ~~ak~~L~~~gi~y~~~di~~d~--~~~~-~l~~~~g~~tvP~ifi~g~~i 82 (111)
T 3zyw_A 35 KQMVEILHKHNIQFSSFDIFSDE--EVRQ-GLKAYSSWPTYPQLYVSGELI 82 (111)
T ss_dssp HHHHHHHHHTTCCCEEEEGGGCH--HHHH-HHHHHHTCCSSCEEEETTEEE
T ss_pred HHHHHHHHHcCCCeEEEECcCCH--HHHH-HHHHHHCCCCCCEEEECCEEE
Confidence 45677888888875555433332 2222 444444446688887777654
No 126
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=61.51 E-value=39 Score=25.18 Aligned_cols=41 Identities=7% Similarity=-0.027 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCeEEEEECC-hhhHHHHHHHHcCccEEEEe
Q psy9352 68 LADLDQKFRALGSRLYVVQGK-PEEVFPDIFKTWNIKLLTWE 108 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~-~~~~l~~l~~~~~~~~v~~~ 108 (146)
|.+|.+.+++.|++.++.+.. +......++++.|+..++.+
T Consensus 226 l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~ld 267 (291)
T 1pq4_A 226 LKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAGVELLD 267 (291)
T ss_dssp HHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEEc
Confidence 777888888999998887743 44566778888999888774
No 127
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=61.34 E-value=25 Score=26.21 Aligned_cols=59 Identities=7% Similarity=0.022 Sum_probs=44.8
Q ss_pred EEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChhh--HHHHHHHHcCcc
Q psy9352 42 PLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEE--VFPDIFKTWNIK 103 (146)
Q Consensus 42 ~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~--~l~~l~~~~~~~ 103 (146)
.+|+.|.... ++|.+....+.+-+.+.-+.|.+.|.+++|+.-+... .+..+-+.+++-
T Consensus 52 ~iy~~D~a~~---PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iP 112 (274)
T 3uhf_A 52 IIYYGDTARV---PYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFP 112 (274)
T ss_dssp EEEEECTTTC---CCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSC
T ss_pred EEEEecCCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCC
Confidence 5788886543 6788888888888888888999999999999877665 256666665543
No 128
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=61.11 E-value=44 Score=24.16 Aligned_cols=71 Identities=8% Similarity=0.054 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECC--hhh--HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQGK--PEE--VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g~--~~~--~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
|+.+-+..+++.+++.|..+.+...+ +.. .+.+.+...+++.|++....... . + .+.. +.+ ||++..++.
T Consensus 29 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~--~-~-~~~~-l~~-~iPvV~i~~ 102 (303)
T 3kke_A 29 VFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFD--D-D-MLAA-VLE-GVPAVTINS 102 (303)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCC--H-H-HHHH-HHT-TSCEEEESC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCc--H-H-HHHH-HhC-CCCEEEECC
Confidence 66677888889999999999888643 221 22333445689999885432221 1 1 3333 445 999998875
Q ss_pred C
Q psy9352 139 H 139 (146)
Q Consensus 139 ~ 139 (146)
.
T Consensus 103 ~ 103 (303)
T 3kke_A 103 R 103 (303)
T ss_dssp C
T ss_pred c
Confidence 4
No 129
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=60.88 E-value=33 Score=22.73 Aligned_cols=43 Identities=7% Similarity=0.028 Sum_probs=30.2
Q ss_pred HHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 93 FPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 93 l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
+.+++++..++-|+...+...........+++.+-+.+|++.+
T Consensus 88 i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 88 IRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp HHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred HHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEc
Confidence 5667777788888876655333344556788888889998764
No 130
>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6
Probab=60.54 E-value=34 Score=23.23 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCCe---EEEecCC
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKVK---VEQHVSH 139 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~---~~~~~~~ 139 (146)
++.++=+.|++ |+++.+..+.+...+....+..++ +.++... .. .+-.-..+..++++.|+. +..+.|+
T Consensus 88 g~~~~l~~L~~-~~~l~i~T~~~~~~~~~~l~~~gl~~~f~~i~~~~--~~-~Kp~p~~~~~~~~~lg~~p~~~~~vgDs 163 (210)
T 2ah5_A 88 QIIDLLEELSS-SYPLYITTTKDTSTAQDMAKNLEIHHFFDGIYGSS--PE-APHKADVIHQALQTHQLAPEQAIIIGDT 163 (210)
T ss_dssp THHHHHHHHHT-TSCEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEEC--SS-CCSHHHHHHHHHHHTTCCGGGEEEEESS
T ss_pred CHHHHHHHHHc-CCeEEEEeCCCHHHHHHHHHhcCchhheeeeecCC--CC-CCCChHHHHHHHHHcCCCcccEEEECCC
Confidence 34555566778 999988887776666677777665 4566543 11 111222666677777763 4444443
No 131
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=60.40 E-value=5.6 Score=28.66 Aligned_cols=69 Identities=16% Similarity=0.104 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHc-CccEEEEeeecC---hhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW-NIKLLTWEYDIE---PYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~-~~~~v~~~~~~~---~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
++|+-..+..+++||+-+|+....-+.-..+.+.. + +-|..+..++ |...+.+..+++.+++.|+++..
T Consensus 38 ~tl~la~era~e~~Ik~iVVASssG~TA~k~~e~~~~-~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 110 (206)
T 1t57_A 38 RVLELVGERADQLGIRNFVVASVSGETALRLSEMVEG-NIVSVTHHAGFREKGQLELEDEARDALLERGVNVYA 110 (206)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTCCS-EEEEECCCTTSSSTTCCSSCHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHccC-CEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEE
Confidence 56777777888889998888644333333344432 2 5566665553 44555667788889999998764
No 132
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=60.22 E-value=44 Score=23.93 Aligned_cols=70 Identities=4% Similarity=-0.115 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC----hhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQGK----PEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~----~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.|+.+-+..+++.+++.|..+.+...+ ..+.+..+ ...+++.|++....... ..+. .+.+ ||++..++
T Consensus 24 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~-----~~~~-~~~~-~iPvV~i~ 95 (289)
T 3k9c_A 24 PFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQAL-MRERCEAAILLGTRFDT-----DELG-ALAD-RVPALVVA 95 (289)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHH-TTTTEEEEEEETCCCCH-----HHHH-HHHT-TSCEEEES
T ss_pred chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHH-HhCCCCEEEEECCCCCH-----HHHH-HHHc-CCCEEEEc
Confidence 477788888999999999999887632 22334444 34588888875322211 1333 3445 99999887
Q ss_pred CC
Q psy9352 138 SH 139 (146)
Q Consensus 138 ~~ 139 (146)
..
T Consensus 96 ~~ 97 (289)
T 3k9c_A 96 RA 97 (289)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 133
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=59.63 E-value=34 Score=22.41 Aligned_cols=42 Identities=10% Similarity=0.027 Sum_probs=24.3
Q ss_pred HHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 95 DIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 95 ~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
+.+++-.+.-|+...+.+|.... ..+..+|++.+|++..+.+
T Consensus 34 Kai~~gka~LViiA~D~~p~~~~--~~i~~lc~~~~Ip~~~v~s 75 (126)
T 2xzm_U 34 RTIEAKQALFVCVAEDCDQGNYV--KLVKALCAKNEIKYVSVPK 75 (126)
T ss_dssp HHHHHTCCSEEEEESSCCSTTHH--HHHHHHHHHTTCCEEEESC
T ss_pred HHHHcCCceEEEEeCCCChHHHH--HHHHHHHHHhCCCEEEECC
Confidence 33455566666666666543332 2466666667777766654
No 134
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=59.55 E-value=32 Score=22.90 Aligned_cols=19 Identities=11% Similarity=0.293 Sum_probs=12.6
Q ss_pred hhHHHHHHHHcCccEEEEe
Q psy9352 90 EEVFPDIFKTWNIKLLTWE 108 (146)
Q Consensus 90 ~~~l~~l~~~~~~~~v~~~ 108 (146)
.+.|.+++++++++.|++-
T Consensus 42 ~~~l~~li~e~~v~~iVvG 60 (138)
T 1nu0_A 42 WNIIERLLKEWQPDEIIVG 60 (138)
T ss_dssp HHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 3556677777777777664
No 135
>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19
Probab=59.45 E-value=14 Score=25.70 Aligned_cols=43 Identities=7% Similarity=0.052 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChh---------------hHHHHHHHHcCc--cEEEEe
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPE---------------EVFPDIFKTWNI--KLLTWE 108 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~---------------~~l~~l~~~~~~--~~v~~~ 108 (146)
.+..++=+.|++.|+++.+..+.+. +.+..+.++.++ +.++..
T Consensus 59 ~g~~e~L~~L~~~G~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 118 (218)
T 2o2x_A 59 PQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREEGVFVDMVLAC 118 (218)
T ss_dssp GGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHHHHHHTTCCCSEEEEE
T ss_pred cCHHHHHHHHHHCCCEEEEEcCcCCCCcccccHHHHHHHHHHHHHHHHHcCCceeeEEEe
Confidence 4455555667778999999999887 677888888874 455543
No 136
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3
Probab=59.25 E-value=19 Score=23.76 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCCe-EEEecCC
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKVK-VEQHVSH 139 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~-~~~~~~~ 139 (146)
..+.++-+.|++.|+++.+..+.+. .+....+..++ +.++...+... ....-..+..++++.|+. +..+.|+
T Consensus 85 ~~~~~~l~~l~~~g~~~~i~t~~~~-~~~~~l~~~~~~~~f~~~~~~~~~~~-~kp~~~~~~~~~~~~~~~~~~~iGD~ 161 (190)
T 2fi1_A 85 EGVSDLLEDISNQGGRHFLVSHRND-QVLEILEKTSIAAYFTEVVTSSSGFK-RKPNPESMLYLREKYQISSGLVIGDR 161 (190)
T ss_dssp TTHHHHHHHHHHTTCEEEEECSSCT-HHHHHHHHTTCGGGEEEEECGGGCCC-CTTSCHHHHHHHHHTTCSSEEEEESS
T ss_pred cCHHHHHHHHHHCCCcEEEEECCcH-HHHHHHHHcCCHhheeeeeeccccCC-CCCCHHHHHHHHHHcCCCeEEEEcCC
Confidence 3456666777888999999887654 45666777665 34444433321 111122566677777774 4444443
No 137
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=58.82 E-value=51 Score=24.21 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC--hhhH--HHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQGK--PEEV--FPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~--~~~~--l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.|+.+-+..+++.+++.|..+.+...+ +... ..+.+...+++.|++...... +..+.+.+++.||++..++
T Consensus 76 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-----~~~~~~~~~~~~iPvV~~~ 150 (338)
T 3dbi_A 76 IYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS-----VDEIDDIIDAHSQPIMVLN 150 (338)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSC-----HHHHHHHHHHCSSCEEEES
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-----hHHHHHHHHcCCCCEEEEc
Confidence 377778888899999999999888743 3322 223334468999988532221 1245666777899998876
Q ss_pred CC
Q psy9352 138 SH 139 (146)
Q Consensus 138 ~~ 139 (146)
..
T Consensus 151 ~~ 152 (338)
T 3dbi_A 151 RR 152 (338)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 138
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=58.63 E-value=44 Score=23.34 Aligned_cols=71 Identities=11% Similarity=0.041 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCeEEEEECChhhHHHHHHHH--cCccEEEEeeec-ChhHHHHHHHHHHHHHhCCCeEEEecCCeeeeC
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEEVFPDIFKT--WNIKLLTWEYDI-EPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNT 144 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~--~~~~~v~~~~~~-~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~p 144 (146)
.+++.-.++|+.+.+++.+.+..|-+.+.+ .+++.|+.|--. +.... +++.+++..++++..++-+.++..
T Consensus 61 ~l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyTHtSv----AlrDAL~~v~~P~VEVHiSNihaR 134 (172)
T 3n8k_A 61 LIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSV----ALRDACAELSAPLIEVHISNVHAR 134 (172)
T ss_dssp HHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCH----HHHHHHTTCCSCEEEEESSCTTSS
T ss_pred HHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhH----HHHHHHHhCCCCEEEEEcCCchhc
Confidence 333344468999999998777655555443 246788888642 32222 566667778899999987766544
No 139
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=58.08 E-value=42 Score=24.78 Aligned_cols=61 Identities=10% Similarity=0.006 Sum_probs=46.6
Q ss_pred EEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChhh--HHHHHHHHc-CccEE
Q psy9352 42 PLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEE--VFPDIFKTW-NIKLL 105 (146)
Q Consensus 42 ~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~--~l~~l~~~~-~~~~v 105 (146)
.+|+-|.... ++|......+.+-+.+.-+.|.+.|.+++|+.-+... .+..+-+.+ ++-.|
T Consensus 35 ~iy~~D~a~~---PYG~~~~~~i~~~~~~~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvi 98 (268)
T 3out_A 35 IIYFGDIARI---PYGTKSRATIQKFAAQTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVI 98 (268)
T ss_dssp EEEEECTTTC---CCTTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEE
T ss_pred EEEecCCCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEE
Confidence 5788887443 6788888888888888889999999999999877665 457777766 54333
No 140
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=57.86 E-value=42 Score=24.35 Aligned_cols=69 Identities=13% Similarity=-0.027 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCeEEEEEC-Chh---hHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCe
Q psy9352 68 LADLDQKFRALGSRLYVVQG-KPE---EVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHT 140 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g-~~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~ 140 (146)
++.+++.+++.|+++....- +.. +.+.+|.. +.++||+..+..-...- +.+.+...+.+|++..|++..
T Consensus 158 ~~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~~--~~dai~~~~D~~a~g~~--~~l~~~~~~~~i~vig~d~~~ 230 (302)
T 2qh8_A 158 MELLKLSAAKHGIKLVEATALKSADVQSATQAIAE--KSDVIYALIDNTVASAI--EGMIVAANQAKTPVFGAATSY 230 (302)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHGG--GCSEEEECSCHHHHTTH--HHHHHHHHHTTCCEEESSHHH
T ss_pred HHHHHHHHHHcCCEEEEEecCChHHHHHHHHHHhc--cCCEEEECCcHhHHHHH--HHHHHHHHHcCCCEEECCHHH
Confidence 45667778888998765442 222 33444432 68999997665322211 134444445789998887643
No 141
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=57.80 E-value=43 Score=22.95 Aligned_cols=71 Identities=10% Similarity=0.070 Sum_probs=46.2
Q ss_pred HHHHHHhcCCeEEEEECChhhHHHHHHHH--cCccEEEEeee-cChhHHHHHHHHHHHHHhCCCeEEEecCCeeeeCC
Q psy9352 71 LDQKFRALGSRLYVVQGKPEEVFPDIFKT--WNIKLLTWEYD-IEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNTN 145 (146)
Q Consensus 71 L~~~L~~~g~~L~v~~g~~~~~l~~l~~~--~~~~~v~~~~~-~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~p~ 145 (146)
+++.-.++|..+.+++.+.+..|-+.+.+ .+++.|+.|-- |+.... +++.+++..++++..++-+.++..+
T Consensus 41 l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSv----AlrDAl~~~~~P~VEVHiSNi~aRE 114 (153)
T 3lwz_A 41 LEIQAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTHTSV----ALRDALLGVQIPFIEIHLSNVHARE 114 (153)
T ss_dssp HHHHHHHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCH----HHHHHHHHHTCCEEEEESSCGGGSC
T ss_pred HHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEccccceechH----HHHHHHHhcCCCEEEEEcCCccccc
Confidence 33334467999999998877665555554 35788999864 232322 4555555567999998877665443
No 142
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=57.16 E-value=51 Score=23.71 Aligned_cols=66 Identities=11% Similarity=0.050 Sum_probs=40.6
Q ss_pred HHHhcCCeEEEEECChhhHHHHHHHHcCcc---------------EEEEeeecChhHHHHHHHHHHHHHhC--CCeEEEe
Q psy9352 74 KFRALGSRLYVVQGKPEEVFPDIFKTWNIK---------------LLTWEYDIEPYAKKRDGLVEDMAKEY--KVKVEQH 136 (146)
Q Consensus 74 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~---------------~v~~~~~~~~~~~~rd~~v~~~~~~~--~i~~~~~ 136 (146)
+|++.|+.+.+..|.+...+..+.++.+.. .+.......+ +.-+.+.+.+++. ++.+..+
T Consensus 50 ~l~~~G~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~i~~~~l~~---~~~~~i~~~~~~~~~~~~~~~~ 126 (283)
T 3dao_A 50 RLIDKGIIFVVCSGRQFSSEFKLFAPIKHKLLYITDGGTVVRTPKEILKTYPMDE---DIWKGMCRMVRDELPACDYFAA 126 (283)
T ss_dssp HHHHTTCEEEEECSSCHHHHHHHTGGGGGGCEEEETTTTEEECSSCEEEECCCCH---HHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHCCCEEEEEcCCCHHHHHHHHHHcCCCcEEEECCCcEEEECCEEEEEecCCH---HHHHHHHHHHHHhcCCceEEEE
Confidence 345679999999999998888888776543 1222222222 2222455555555 7887776
Q ss_pred cCCeee
Q psy9352 137 VSHTLY 142 (146)
Q Consensus 137 ~~~~L~ 142 (146)
.....+
T Consensus 127 ~~~~~~ 132 (283)
T 3dao_A 127 TPDFCF 132 (283)
T ss_dssp CSSCEE
T ss_pred eCCeEE
Confidence 665544
No 143
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=57.01 E-value=47 Score=23.18 Aligned_cols=71 Identities=6% Similarity=0.036 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEE-C-ChhhHHHHHHHHc--CccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 66 QSLADLDQKFRALGSRLYVVQ-G-KPEEVFPDIFKTW--NIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~-g-~~~~~l~~l~~~~--~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
+++.-++..+++.|-++.|-. | ....++..++.+. .+..|+++....+.+ -.+.+++.+++.||+++.+..
T Consensus 31 ~~~~~l~~~~~~~~~~v~Va~SGGkDS~vLL~ll~~~~~~v~~v~vd~g~~~~e--~~~~v~~~~~~~gi~~~v~~~ 105 (215)
T 1sur_A 31 DAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPE--TYRFIDELTDKLKLNLKVYRA 105 (215)
T ss_dssp CHHHHHHHHHHHCCSEEEEECCCCTTHHHHHHHHHHHSTTCEEEEEECSCBCHH--HHHHHHHHHHHTTCEEEEEEC
T ss_pred CHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCeEEEeeCCCCCHH--HHHHHHHHHHHhCCcEEEEeC
Confidence 345556666777776666643 4 3334566666654 567777776655432 234788888999999988754
No 144
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6
Probab=56.76 E-value=41 Score=22.45 Aligned_cols=64 Identities=11% Similarity=0.145 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCCe
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKVK 132 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~ 132 (146)
+.++-+.|++.|.++.+..+.+...+..+.+..++ +.+++..+.... +..-..+..+++..|+.
T Consensus 99 ~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-kp~~~~~~~~~~~~~i~ 166 (226)
T 1te2_A 99 VREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYS-KPHPQVYLDCAAKLGVD 166 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGGCSEEEECTTSSCC-TTSTHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhcCcHhhCcEEEeccccCCC-CCChHHHHHHHHHcCCC
Confidence 44455667788999999998887777777777664 456654443211 11112556666666653
No 145
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A
Probab=56.49 E-value=44 Score=22.73 Aligned_cols=37 Identities=11% Similarity=0.329 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCcc
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIK 103 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 103 (146)
++.++=+.|++.|+++.|..+.+...+..+.+..++.
T Consensus 90 g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~gl~ 126 (225)
T 1nnl_A 90 GIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIP 126 (225)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHcCCC
Confidence 4566777788899999999999888888889988886
No 146
>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A
Probab=56.41 E-value=11 Score=26.53 Aligned_cols=65 Identities=11% Similarity=0.006 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cE-EEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KL-LTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~-v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
++.++-+.|++.|+++.++.+.+...+..+.+..++ +. ++...+.....+-.-..+..+++..|+
T Consensus 114 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~i~~~~~~~~~~Kp~~~~~~~~~~~lgi 183 (259)
T 4eek_A 114 GAAETLRALRAAGVPFAIGSNSERGRLHLKLRVAGLTELAGEHIYDPSWVGGRGKPHPDLYTFAAQQLGI 183 (259)
T ss_dssp THHHHHHHHHHHTCCEEEECSSCHHHHHHHHHHTTCHHHHCSCEECGGGGTTCCTTSSHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHhcChHhhccceEEeHhhcCcCCCCChHHHHHHHHHcCC
Confidence 345666778888999999998888788888888775 34 665544430111112256666777676
No 147
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=56.39 E-value=44 Score=24.71 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=45.4
Q ss_pred EEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChhh--HHHHHHHHcCccEE
Q psy9352 42 PLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEE--VFPDIFKTWNIKLL 105 (146)
Q Consensus 42 ~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~--~l~~l~~~~~~~~v 105 (146)
.+|+-|.... ++|.+-...+.+-..+.-+.|.+.|.+++|+.-+... .+..+-+.+++-.|
T Consensus 33 ~iy~~D~a~~---PYG~ks~~~i~~~~~~~~~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvi 95 (269)
T 3ist_A 33 VYYLGDTARC---PYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVI 95 (269)
T ss_dssp EEEEECGGGC---CCTTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEE
T ss_pred EEEEeCCCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEE
Confidence 6788887544 6788777788887888888888899999999877665 36667666654433
No 148
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=56.10 E-value=32 Score=22.20 Aligned_cols=41 Identities=12% Similarity=-0.006 Sum_probs=21.8
Q ss_pred HHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 95 DIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 95 ~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
..+++-.+.-|+...+.+|.+... .+..+|++.||++..+.
T Consensus 30 kai~~gkakLViiA~D~~~~~~~~--~l~~lc~~~~VP~~~v~ 70 (121)
T 2lbw_A 30 KALRKGEKGLVVIAGDIWPADVIS--HIPVLCEDHSVPYIFIP 70 (121)
T ss_dssp HHHHHSCCCEEEECTTCSCTTHHH--HHHHHHHHTCCCEEECC
T ss_pred HHHHcCCceEEEEeCCCCHHHHHH--HHHHHHHhcCCcEEEEC
Confidence 334445566666666665543222 35555666666665554
No 149
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=55.98 E-value=22 Score=23.28 Aligned_cols=45 Identities=4% Similarity=-0.011 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEE
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTW 107 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 107 (146)
-.+..|.++.+++++.|+.++.+.-+..+.+.+++++++++--+.
T Consensus 47 ~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~ 91 (161)
T 3drn_A 47 REASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILV 91 (161)
T ss_dssp HHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEE
Confidence 356779999999999999998888888888999999988874444
No 150
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=55.20 E-value=25 Score=23.18 Aligned_cols=38 Identities=8% Similarity=0.118 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCCe-EEEEECChhhHHHHHHHHcCc
Q psy9352 65 QQSLADLDQKFRALGSR-LYVVQGKPEEVFPDIFKTWNI 102 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~~ 102 (146)
+..|.++.+++++.|+. ++.+.-+..+.+.++++++++
T Consensus 56 ~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~ 94 (162)
T 1tp9_A 56 VPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPE 94 (162)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCC
Confidence 46688888899889999 998888777888999999888
No 151
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=55.18 E-value=34 Score=23.17 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
+.++-+.|+ .|.++.+..+.+...+..+.+..+. +.+++..+.+.. +..-..+..+++..|+
T Consensus 112 ~~~~l~~l~-~g~~~~i~sn~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~-kp~~~~~~~~~~~lgi 177 (240)
T 3qnm_A 112 AKEVLEYLA-PQYNLYILSNGFRELQSRKMRSAGVDRYFKKIILSEDLGVL-KPRPEIFHFALSATQS 177 (240)
T ss_dssp HHHHHHHHT-TTSEEEEEECSCHHHHHHHHHHHTCGGGCSEEEEGGGTTCC-TTSHHHHHHHHHHTTC
T ss_pred HHHHHHHHH-cCCeEEEEeCCchHHHHHHHHHcChHhhceeEEEeccCCCC-CCCHHHHHHHHHHcCC
Confidence 345555667 7899999998877777777776653 667766554322 2122367777777776
No 152
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=55.06 E-value=56 Score=23.46 Aligned_cols=73 Identities=7% Similarity=-0.010 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC----Chhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEE
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG----KPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVE 134 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g----~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~ 134 (146)
.|+.+-+..+++.+++.|..+.+... ++.. .+..+. ..+++.|++.-.... .. + ...+.+.+.||++.
T Consensus 16 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiii~~~~~~-~~--~-~~~~~~~~~giPvV 90 (297)
T 3rot_A 16 PYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESAL-ATYPSGIATTIPSDT-AF--S-KSLQRANKLNIPVI 90 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHH-HTCCSEEEECCCCSS-TT--H-HHHHHHHHHTCCEE
T ss_pred chHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHH-HcCCCEEEEeCCCHH-HH--H-HHHHHHHHCCCCEE
Confidence 47777788888899999999988873 3332 333333 358998887532221 11 1 22334456799999
Q ss_pred EecCC
Q psy9352 135 QHVSH 139 (146)
Q Consensus 135 ~~~~~ 139 (146)
.++..
T Consensus 91 ~~~~~ 95 (297)
T 3rot_A 91 AVDTR 95 (297)
T ss_dssp EESCC
T ss_pred EEcCC
Confidence 88754
No 153
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=54.61 E-value=29 Score=22.46 Aligned_cols=11 Identities=9% Similarity=0.287 Sum_probs=5.6
Q ss_pred HHHHHHHHcCc
Q psy9352 92 VFPDIFKTWNI 102 (146)
Q Consensus 92 ~l~~l~~~~~~ 102 (146)
...++.++.++
T Consensus 40 ~ak~lL~~~gv 50 (118)
T 2wul_A 40 AVVQILRLHGV 50 (118)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHhCC
Confidence 34455555555
No 154
>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=54.55 E-value=32 Score=22.99 Aligned_cols=65 Identities=9% Similarity=-0.006 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCCe
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKVK 132 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~ 132 (146)
.+.++-+.|++.|..+.++.+.+...+....+..++ +.+++..+... .+..-..+..+++..|+.
T Consensus 93 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~~~~~~~~~~~~~~ 161 (225)
T 3d6j_A 93 DTLPTLTHLKKQGIRIGIISTKYRFRILSFLRNHMPDDWFDIIIGGEDVTH-HKPDPEGLLLAIDRLKAC 161 (225)
T ss_dssp THHHHHHHHHHHTCEEEEECSSCHHHHHHHHHTSSCTTCCSEEECGGGCSS-CTTSTHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHcCchhheeeeeehhhcCC-CCCChHHHHHHHHHhCCC
Confidence 344555567778999998888777777777777664 44554433221 111112566667777764
No 155
>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}
Probab=54.44 E-value=15 Score=25.50 Aligned_cols=65 Identities=9% Similarity=-0.086 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
+.++.++=+.|++.|+++-|..+.+......+.. .-.+.|++..+....--..+ .+..++++.|+
T Consensus 38 ~pg~~e~L~~L~~~g~~~~i~T~~~~~~~~~~~~-~~~d~v~~~~~~~~~KP~p~-~~~~a~~~l~~ 102 (196)
T 2oda_A 38 TPGAQNALKALRDQGMPCAWIDELPEALSTPLAA-PVNDWMIAAPRPTAGWPQPD-ACWMALMALNV 102 (196)
T ss_dssp CTTHHHHHHHHHHHTCCEEEECCSCHHHHHHHHT-TTTTTCEECCCCSSCTTSTH-HHHHHHHHTTC
T ss_pred CcCHHHHHHHHHHCCCEEEEEcCChHHHHHHhcC-ccCCEEEECCcCCCCCCChH-HHHHHHHHcCC
Confidence 4566666677778899999999988777666655 44567777655431110112 45555566554
No 156
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=54.31 E-value=16 Score=23.59 Aligned_cols=45 Identities=4% Similarity=0.049 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEE
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTW 107 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 107 (146)
-....|.++.++++..|+.++.+.-+..+.+.+++++++++--.+
T Consensus 41 ~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~ 85 (151)
T 3raz_A 41 KEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIW 85 (151)
T ss_dssp HHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEE
T ss_pred HHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceE
Confidence 345668888888877788888888777788899999988764444
No 157
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=54.19 E-value=64 Score=23.93 Aligned_cols=71 Identities=11% Similarity=0.134 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChhhH--HHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG--KPEEV--FPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~~--l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.|+.+-+..+++.+++.|..+.+... ++... +.+.+...+++.|++...... + ...+.+.+.|+++..++
T Consensus 83 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-----~-~~~~~l~~~~iPvV~i~ 156 (355)
T 3e3m_A 83 LHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHT-----E-QTIRLLQRASIPIVEIW 156 (355)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCC-----H-HHHHHHHHCCSCEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-----H-HHHHHHHhCCCCEEEEC
Confidence 37778888899999999999988764 33321 222233468888887532221 1 23344567899999885
Q ss_pred C
Q psy9352 138 S 138 (146)
Q Consensus 138 ~ 138 (146)
+
T Consensus 157 ~ 157 (355)
T 3e3m_A 157 E 157 (355)
T ss_dssp S
T ss_pred C
Confidence 4
No 158
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=53.89 E-value=57 Score=23.25 Aligned_cols=70 Identities=11% Similarity=-0.079 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC--Chh---hHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQG--KPE---EVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
|+.+-+..+++.+++.|..+.+... ++. +.+..+ ...+++.|++....... ..+. .+.+.||++..++
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~-----~~~~-~l~~~~iPvV~~~ 94 (287)
T 3bbl_A 22 ILDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLI-RSGNVDGFVLSSINYND-----PRVQ-FLLKQKFPFVAFG 94 (287)
T ss_dssp THHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHH-HTTCCSEEEECSCCTTC-----HHHH-HHHHTTCCEEEES
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHH-HcCCCCEEEEeecCCCc-----HHHH-HHHhcCCCEEEEC
Confidence 6667788888889999999887652 222 234444 45689988875322111 1233 3456799999886
Q ss_pred CC
Q psy9352 138 SH 139 (146)
Q Consensus 138 ~~ 139 (146)
..
T Consensus 95 ~~ 96 (287)
T 3bbl_A 95 RS 96 (287)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 159
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=53.54 E-value=42 Score=24.24 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=40.6
Q ss_pred HHHhcCCeEEEEECChhhHHHHHHHHcCccE----EEE-ee---------ec---ChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 74 KFRALGSRLYVVQGKPEEVFPDIFKTWNIKL----LTW-EY---------DI---EPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 74 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~----v~~-~~---------~~---~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
+|.+.|+.+.+..|.+...+..++++.+.+. +++ |- .. .+...+.-+.+.+.+++.++.+..+
T Consensus 33 ~l~~~Gi~vviaTGR~~~~~~~~~~~l~l~~~~~~~I~~NGa~i~~~~~~~~i~~~~l~~~~~~~i~~~~~~~~~~~~~~ 112 (282)
T 1rkq_A 33 AARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSREVGSHFHAL 112 (282)
T ss_dssp HHHHTTCEEEEECSSCGGGTHHHHHHTTCCSTTCEEEEGGGTEEEETTTCCEEEECCBCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCCCCeEEEeCCeEEEECCCCeEEEEecCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3456799999999998888888888876542 211 11 10 0111222235666666668877766
Q ss_pred cCCee
Q psy9352 137 VSHTL 141 (146)
Q Consensus 137 ~~~~L 141 (146)
.+...
T Consensus 113 ~~~~~ 117 (282)
T 1rkq_A 113 DRTTL 117 (282)
T ss_dssp CSSCE
T ss_pred ECCEE
Confidence 55443
No 160
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=53.45 E-value=50 Score=22.48 Aligned_cols=73 Identities=12% Similarity=0.023 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCeEEEEECChhhHHHHHHHHc--C-ccEEEEeee-cChhHHHHHHHHHHHHHhCCCeEEEecCCeeeeC
Q psy9352 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW--N-IKLLTWEYD-IEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNT 144 (146)
Q Consensus 69 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~--~-~~~v~~~~~-~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~p 144 (146)
..+++..+++|..+.+++.+.+..|-..+.+. + ++.|+.|-- |+.... +++.+++.-++++..++-+.++..
T Consensus 31 ~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aR 106 (149)
T 2uyg_A 31 ALCEAWGAELGLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSY----ALLDAIRAQPLPVVEVHLTNLHAR 106 (149)
T ss_dssp HHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCH----HHHHHHHTSCSCEEEEESSCGGGS
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhccCCeeEEEEccchhccccH----HHHHHHHhCCCCEEEEEecCcccc
Confidence 34444456789999999988886666666553 2 778999864 233333 577777778899999987776654
Q ss_pred C
Q psy9352 145 N 145 (146)
Q Consensus 145 ~ 145 (146)
+
T Consensus 107 E 107 (149)
T 2uyg_A 107 E 107 (149)
T ss_dssp C
T ss_pred c
Confidence 3
No 161
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=53.44 E-value=63 Score=23.62 Aligned_cols=72 Identities=7% Similarity=0.028 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--Chh---hHHHHHHHHcC--ccEEEEeeecChhHHHHHHHHHHHHHhCCCeEE
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG--KPE---EVFPDIFKTWN--IKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVE 134 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~--~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~ 134 (146)
.|+.+-+..+++.+++.|..+.+... ++. +.+..+.+ .+ ++.|++... ... .....+ +.+.+.||++.
T Consensus 18 ~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~-~~~~vdgiIi~~~-~~~--~~~~~~-~~~~~~~iPvV 92 (332)
T 2rjo_A 18 PYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQ-KTGGNLVLNVDPN-DSA--DARVIV-EACSKAGAYVT 92 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHH-HTTTCEEEEECCS-SHH--HHHHHH-HHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHH-CCCCCCEEEEeCC-CHH--HHHHHH-HHHHHCCCeEE
Confidence 47778888899999999999988764 332 23444554 46 888887432 221 111123 33455789998
Q ss_pred EecC
Q psy9352 135 QHVS 138 (146)
Q Consensus 135 ~~~~ 138 (146)
.++.
T Consensus 93 ~~~~ 96 (332)
T 2rjo_A 93 TIWN 96 (332)
T ss_dssp EESC
T ss_pred EECC
Confidence 8865
No 162
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=53.37 E-value=11 Score=25.73 Aligned_cols=50 Identities=12% Similarity=0.142 Sum_probs=34.2
Q ss_pred HHHHhcCCeEEEEECChhhHHHHHHH--HcCccEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 73 QKFRALGSRLYVVQGKPEEVFPDIFK--TWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 73 ~~L~~~g~~L~v~~g~~~~~l~~l~~--~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
+.|++.|+++.|..|+ .....+++ ..++. ++... .. . -..+..++++.|+
T Consensus 46 ~~Lk~~Gi~~~I~Tg~--~~~~~~l~~l~lgi~-~~~g~----~~-K-~~~l~~~~~~~gi 97 (168)
T 3ewi_A 46 SLLKKSGIEVRLISER--ACSKQTLSALKLDCK-TEVSV----SD-K-LATVDEWRKEMGL 97 (168)
T ss_dssp HHHHHTTCEEEEECSS--CCCHHHHHTTCCCCC-EECSC----SC-H-HHHHHHHHHHTTC
T ss_pred HHHHHCCCEEEEEeCc--HHHHHHHHHhCCCcE-EEECC----CC-h-HHHHHHHHHHcCc
Confidence 5667789999999999 45567777 67887 44321 11 2 2377788887776
No 163
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=52.96 E-value=56 Score=22.86 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC--hhhH--HHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQGK--PEEV--FPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~--~~~~--l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.|+.+-+..+++.+++.|..+.+...+ +... +.+.+...+++.|++....... + ...+.+.+.||++..++
T Consensus 15 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~----~-~~~~~~~~~~iPvV~~~ 89 (272)
T 3o74_A 15 PSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPE----D-DSYRELQDKGLPVIAID 89 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSS----C-CHHHHHHHTTCCEEEES
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc----H-HHHHHHHHcCCCEEEEc
Confidence 377778888899999999999988743 3221 2223344689988885432111 1 22334566899999886
Q ss_pred CC
Q psy9352 138 SH 139 (146)
Q Consensus 138 ~~ 139 (146)
..
T Consensus 90 ~~ 91 (272)
T 3o74_A 90 RR 91 (272)
T ss_dssp SC
T ss_pred cC
Confidence 53
No 164
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*
Probab=52.80 E-value=23 Score=25.04 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEe
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWE 108 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 108 (146)
.+..++-+.|++.|+++.+..|++......+.+..++...+..
T Consensus 147 ~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~f~~ 189 (280)
T 3skx_A 147 PESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDDYFAE 189 (280)
T ss_dssp TTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECS
T ss_pred HhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCChhHhHh
Confidence 3445555667788999999999999988999999999877653
No 165
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=52.70 E-value=53 Score=22.50 Aligned_cols=74 Identities=14% Similarity=0.063 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHHc--CccEEEEeeec-ChhHHHHHHHHHHHHHhCCCeEEEecCCeeeeC
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW--NIKLLTWEYDI-EPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYNT 144 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~--~~~~v~~~~~~-~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~p 144 (146)
...+++..+++|+.+.+++.+.+..|-+.+.+. +++.|+.|--. +.... +++.+++.-++++..++-+.++..
T Consensus 32 ~~~l~~~a~~~g~~l~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aR 107 (154)
T 1uqr_A 32 EQHLQQSAQAQGYELDYFQANGEESLINRIHQAFQNTDFIIINPGAFTHTSV----AIRDALLAVSIPFIEVHLSNVHAR 107 (154)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCH----HHHHHHHHHTCCEEEEESSCGGGS
T ss_pred HHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECcchhccchH----HHHHHHHhCCCCEEEEEecCcccc
Confidence 334444456789999999988886666666553 47889997532 22222 566666666899999987776554
Q ss_pred C
Q psy9352 145 N 145 (146)
Q Consensus 145 ~ 145 (146)
+
T Consensus 108 E 108 (154)
T 1uqr_A 108 E 108 (154)
T ss_dssp C
T ss_pred c
Confidence 3
No 166
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=52.56 E-value=59 Score=23.05 Aligned_cols=68 Identities=10% Similarity=0.140 Sum_probs=44.8
Q ss_pred HHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEE----------------eeecChhHHHHHHHHHHHHHhCCCe
Q psy9352 73 QKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTW----------------EYDIEPYAKKRDGLVEDMAKEYKVK 132 (146)
Q Consensus 73 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~----------------~~~~~~~~~~rd~~v~~~~~~~~i~ 132 (146)
++|.+.|+.+.+..|.+...+..++++.+. .-+++ .....+ +. -..+.+.+++.++.
T Consensus 32 ~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~i~~nGa~i~~~~~~~~~~~~~l~~-~~--~~~i~~~~~~~~~~ 108 (279)
T 4dw8_A 32 IRIQEQGIRLVLASGRPTYGIVPLANELRMNEFGGFILSYNGGEIINWESKEMMYENVLPN-EV--VPVLYECARTNHLS 108 (279)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHHHTTGGGTTCEEEEGGGTEEEETTTCCEEEECCCCG-GG--HHHHHHHHHHTTCE
T ss_pred HHHHHCCCEEEEEcCCChHHHHHHHHHhCCCCCCCEEEEeCCeEEEECCCCeEEEEecCCH-HH--HHHHHHHHHHcCCE
Confidence 345567999999999999888888888775 22221 111121 11 22566677788998
Q ss_pred EEEecCCeeee
Q psy9352 133 VEQHVSHTLYN 143 (146)
Q Consensus 133 ~~~~~~~~L~~ 143 (146)
+..+.+..++.
T Consensus 109 ~~~~~~~~~~~ 119 (279)
T 4dw8_A 109 ILTYDGAEIVT 119 (279)
T ss_dssp EEEEETTEEEE
T ss_pred EEEEECCEEEE
Confidence 88887766554
No 167
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=52.54 E-value=30 Score=23.22 Aligned_cols=40 Identities=8% Similarity=-0.036 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhcCC-eEEEEECChhhHHHHHHHHcCcc
Q psy9352 64 LQQSLADLDQKFRALGS-RLYVVQGKPEEVFPDIFKTWNIK 103 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~ 103 (146)
-+..|.++.+++++.|+ .++.+.-+..+...+++++.+++
T Consensus 51 e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~ 91 (167)
T 2wfc_A 51 HLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGAD 91 (167)
T ss_dssp HHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCC
Confidence 34567888888989999 99988877778889999998876
No 168
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Probab=52.19 E-value=27 Score=24.65 Aligned_cols=32 Identities=13% Similarity=0.034 Sum_probs=26.4
Q ss_pred HHHHhcCCeEEEEECChhhHHHHHHHHcCccE
Q psy9352 73 QKFRALGSRLYVVQGKPEEVFPDIFKTWNIKL 104 (146)
Q Consensus 73 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~ 104 (146)
++|++.|+.+.+..|++...+..++++.+++.
T Consensus 32 ~~l~~~g~~~~i~TGr~~~~~~~~~~~l~~~~ 63 (227)
T 1l6r_A 32 RSAEKKGLTVSLLSGNVIPVVYALKIFLGING 63 (227)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHHHHTCCS
T ss_pred HHHHHCCCEEEEECCCCcHHHHHHHHHhCCCC
Confidence 34566899999999999988899998887753
No 169
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=51.97 E-value=59 Score=22.82 Aligned_cols=70 Identities=9% Similarity=0.032 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--Chhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG--KPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
.|+.+-+..+++.+++.|..+.+... ++.. .+..+. ..+++.|++...... +..+. .+.+.||++..+
T Consensus 16 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~~-----~~~~~-~l~~~~iPvV~~ 88 (275)
T 3d8u_A 16 KACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFL-ESRPAGVVLFGSEHS-----QRTHQ-LLEASNTPVLEI 88 (275)
T ss_dssp HHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHH-TSCCCCEEEESSCCC-----HHHHH-HHHHHTCCEEEE
T ss_pred ccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHH-hcCCCEEEEeCCCCC-----HHHHH-HHHhCCCCEEEE
Confidence 37777888889999999999887753 3322 233333 467888776432211 11233 345578999888
Q ss_pred cC
Q psy9352 137 VS 138 (146)
Q Consensus 137 ~~ 138 (146)
+.
T Consensus 89 ~~ 90 (275)
T 3d8u_A 89 AE 90 (275)
T ss_dssp SS
T ss_pred ee
Confidence 65
No 170
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=51.62 E-value=58 Score=23.17 Aligned_cols=72 Identities=4% Similarity=-0.077 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhc-CCeEEEEE-----CChhhH---HHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeE
Q psy9352 63 FLQQSLADLDQKFRAL-GSRLYVVQ-----GKPEEV---FPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKV 133 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~-g~~L~v~~-----g~~~~~---l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~ 133 (146)
|+.+-+..+++.++++ |..+.+.. +++... +..+ ...+++.|++...... . . + ...+.+.+.||++
T Consensus 23 ~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l-~~~~vdgiii~~~~~~-~-~-~-~~~~~~~~~~iPv 97 (304)
T 3gbv_A 23 YWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAV-IEEQPDGVMFAPTVPQ-Y-T-K-GFTDALNELGIPY 97 (304)
T ss_dssp HHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHH-HTTCCSEEEECCSSGG-G-T-H-HHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHH-HhcCCCEEEECCCChH-H-H-H-HHHHHHHHCCCeE
Confidence 6677788888888888 77777653 244332 3333 3468999888532221 1 1 1 2333455679999
Q ss_pred EEecCC
Q psy9352 134 EQHVSH 139 (146)
Q Consensus 134 ~~~~~~ 139 (146)
..++..
T Consensus 98 V~~~~~ 103 (304)
T 3gbv_A 98 IYIDSQ 103 (304)
T ss_dssp EEESSC
T ss_pred EEEeCC
Confidence 988753
No 171
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=51.56 E-value=57 Score=23.24 Aligned_cols=70 Identities=16% Similarity=0.110 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEE-E--CChh---hHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVV-Q--GKPE---EVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~-~--g~~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
|..+-+..+++.+++.|..+.+. . +++. +.+..+. ..+++.|++...... +..+ +.+.+.||++..+
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~-----~~~~-~~l~~~~iPvV~~ 94 (290)
T 3clk_A 22 FAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAI-ERPVMGILLLSIALT-----DDNL-QLLQSSDVPYCFL 94 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHH-SSCCSEEEEESCC---------CH-HHHHCC--CEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHH-hcCCCEEEEecccCC-----HHHH-HHHHhCCCCEEEE
Confidence 66677888888999999999887 4 2332 2344444 458888887432211 1123 3355689999888
Q ss_pred cCC
Q psy9352 137 VSH 139 (146)
Q Consensus 137 ~~~ 139 (146)
+..
T Consensus 95 ~~~ 97 (290)
T 3clk_A 95 SMG 97 (290)
T ss_dssp SCC
T ss_pred cCC
Confidence 653
No 172
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=51.39 E-value=63 Score=22.97 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--Chhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG--KPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
.|+.+-+..+++.+++.|..+.+... ++.. .+..+. ..+++.|++... ..... ...+. .+.+.||++..+
T Consensus 14 ~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~-~~~~~--~~~~~-~~~~~~iPvV~~ 88 (283)
T 2ioy_A 14 PFFVTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLI-QQKVDVLLINPV-DSDAV--VTAIK-EANSKNIPVITI 88 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCS-STTTT--HHHHH-HHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHH-HcCCCEEEEeCC-chhhh--HHHHH-HHHHCCCeEEEe
Confidence 37777888888899999999988763 3332 344444 468998887432 11111 11233 345689999888
Q ss_pred cC
Q psy9352 137 VS 138 (146)
Q Consensus 137 ~~ 138 (146)
+.
T Consensus 89 ~~ 90 (283)
T 2ioy_A 89 DR 90 (283)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 173
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=51.34 E-value=64 Score=23.05 Aligned_cols=71 Identities=10% Similarity=0.049 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--Chh---hHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG--KPE---EVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
.|+.+-+..+++.+++.|..+.+... ++. +.+..+ ...+++.|++...... +..+.. +.+.||++..+
T Consensus 29 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~-----~~~~~~-l~~~~iPvV~~ 101 (289)
T 2fep_A 29 IFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTM-LGKQVDGIVFMGGNIT-----DEHVAE-FKRSPVPIVLA 101 (289)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHH-HHTTCSEEEECCSCCC-----HHHHHH-HHHSSSCEEEE
T ss_pred chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHH-HhCCCCEEEEecCCCC-----HHHHHH-HHhcCCCEEEE
Confidence 47777788888999999999988763 332 233333 3468998887532211 113333 45689999988
Q ss_pred cCC
Q psy9352 137 VSH 139 (146)
Q Consensus 137 ~~~ 139 (146)
+..
T Consensus 102 ~~~ 104 (289)
T 2fep_A 102 ASV 104 (289)
T ss_dssp SCC
T ss_pred ccc
Confidence 653
No 174
>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}
Probab=50.99 E-value=38 Score=23.97 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
+.++=+.|++.|+++.++.+.+.. +..+.+..++ +.++...+.+...-.. ..+..++++.|+
T Consensus 111 ~~~~l~~l~~~g~~~~i~tn~~~~-~~~~l~~~gl~~~f~~~~~~~~~~~~Kp~~-~~~~~~~~~~g~ 176 (263)
T 3k1z_A 111 AEDTLRECRTRGLRLAVISNFDRR-LEGILGGLGLREHFDFVLTSEAAGWPKPDP-RIFQEALRLAHM 176 (263)
T ss_dssp HHHHHHHHHHTTCEEEEEESCCTT-HHHHHHHTTCGGGCSCEEEHHHHSSCTTSH-HHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcEEEEeCCcHH-HHHHHHhCCcHHhhhEEEeecccCCCCCCH-HHHHHHHHHcCC
Confidence 456666778889999999876654 4677777765 5666655443211111 245555666565
No 175
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6
Probab=50.71 E-value=24 Score=23.14 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCcc----EEEEeeecChhHHHHHHHHHHHHHhCCCe
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIK----LLTWEYDIEPYAKKRDGLVEDMAKEYKVK 132 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~----~v~~~~~~~~~~~~rd~~v~~~~~~~~i~ 132 (146)
.+.++-+.|++.|.++.+..+.+...+. ..+..++. .++...+.+.. +..-..+..+++..|+.
T Consensus 89 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~-Kp~~~~~~~~~~~~~i~ 156 (207)
T 2go7_A 89 GAREVLAWADESGIQQFIYTHKGNNAFT-ILKDLGVESYFTEILTSQSGFVR-KPSPEAATYLLDKYQLN 156 (207)
T ss_dssp THHHHHHHHHHTTCEEEEECSSCTHHHH-HHHHHTCGGGEEEEECGGGCCCC-TTSSHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHCCCeEEEEeCCchHHHH-HHHHcCchhheeeEEecCcCCCC-CCCcHHHHHHHHHhCCC
Confidence 4455556677789999888877766666 66666653 44443332211 10012445555555653
No 176
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=50.65 E-value=52 Score=25.04 Aligned_cols=63 Identities=6% Similarity=0.085 Sum_probs=44.5
Q ss_pred EEEEECCCccCCCCCChh-hHHHHHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEe
Q psy9352 42 PLYILDPHFRKFMRVGPN-RWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWE 108 (146)
Q Consensus 42 ~vfv~d~~~~~~~~~~~~-r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 108 (146)
+++++|+ |.. -+++. -..|....+..+-+.+++.|.+.+...+.....++.++ +.|++.+.+.
T Consensus 209 ~i~i~D~--~~~-~lsp~~f~ef~~p~~~~i~~~i~~~g~~~i~~~~G~~~~l~~l~-~~g~d~~~~d 272 (359)
T 2inf_A 209 AIQIFDS--WVG-ALNQADYRTYIKPVMNRIFSELAKENVPLIMFGVGASHLAGDWH-DLPLDVVGLD 272 (359)
T ss_dssp EEEEECT--TGG-GSCHHHHHHHTHHHHHHHHHHHGGGCSCEEEECTTCGGGHHHHH-TSSCSEEECC
T ss_pred EEEEeCC--ccc-cCCHHHHHHHhHHHHHHHHHHHHHcCCcEEEEcCCcHHHHHHHH-HhCCCEEEeC
Confidence 6788888 332 34553 34688899999999998888887666533366777765 5899988774
No 177
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=50.50 E-value=66 Score=22.95 Aligned_cols=69 Identities=9% Similarity=0.032 Sum_probs=43.4
Q ss_pred HHHhcCCeEEEEECChhhHHHHHHHHcCcc-EEEE-e--------eec---ChhHHHHHHHHHHHHHhCCCeEEEecCCe
Q psy9352 74 KFRALGSRLYVVQGKPEEVFPDIFKTWNIK-LLTW-E--------YDI---EPYAKKRDGLVEDMAKEYKVKVEQHVSHT 140 (146)
Q Consensus 74 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~-~v~~-~--------~~~---~~~~~~rd~~v~~~~~~~~i~~~~~~~~~ 140 (146)
+|.+.|+.+.+..|.+...+..+.+..+.. .+++ | ... .+...+.-..+.+.+++.++.+..+.+..
T Consensus 34 ~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~ 113 (290)
T 3dnp_A 34 YVKKKGIYVTLVTNRHFRSAQKIAKSLKLDAKLITHSGAYIAEKIDAPFFEKRISDDHTFNIVQVLESYQCNIRLLHEKY 113 (290)
T ss_dssp HHHHTTCEEEEBCSSCHHHHHHHHHHTTCCSCEEEGGGTEEESSTTSCSEECCCCHHHHHHHHHHHHTSSCEEEEECSSC
T ss_pred HHHHCCCEEEEECCCChHHHHHHHHHcCCCCeEEEcCCeEEEcCCCCEEEecCCCHHHHHHHHHHHHHcCceEEEEECCc
Confidence 345679999999999988888888887765 2221 1 000 01112222356667778888887776654
Q ss_pred ee
Q psy9352 141 LY 142 (146)
Q Consensus 141 L~ 142 (146)
.+
T Consensus 114 ~~ 115 (290)
T 3dnp_A 114 SI 115 (290)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 178
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Probab=50.01 E-value=26 Score=25.53 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEe
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWE 108 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 108 (146)
..++=+.|++.|+++.+..+++...+..+++..++..++..
T Consensus 168 ~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~ 208 (287)
T 3a1c_A 168 AKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAE 208 (287)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECS
T ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCceeeee
Confidence 34455567788999999999998888888999999877754
No 179
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=49.98 E-value=70 Score=23.09 Aligned_cols=70 Identities=6% Similarity=0.032 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCeEEEE-EC-ChhhHHHHHHHHc--CccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 67 SLADLDQKFRALGSRLYVV-QG-KPEEVFPDIFKTW--NIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~-~g-~~~~~l~~l~~~~--~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
++.-|+..+++.|-++.|- .| ....++..++.+. ++..|+++..+.+.+ -.+.+.+.+++.||+++.+..
T Consensus 33 ~~~~l~~a~~~~~~~v~va~SGG~DS~vLL~ll~~~~~~v~vv~idtg~~~~e--t~~~~~~~~~~~gi~~~v~~~ 106 (252)
T 2o8v_A 33 AEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPE--TYRFIDELTDKLKLNLKVYRA 106 (252)
T ss_dssp HHHHHHHHHTTSCSCEEEECCCSTTHHHHHHHHHHHSTTCEEEECCCSCBCHH--HHHHHHHHHHHTTCEEEECCC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCHH--HHHHHHHHHHHhCCceEEEcC
Confidence 4455666666667566554 44 3334566666664 566777765554332 234788888889999988753
No 180
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=49.57 E-value=21 Score=23.51 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=23.4
Q ss_pred HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 92 VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 92 ~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.+.++....+.+.||+- +|..-- +.+.+.+++.||+....+
T Consensus 98 ~l~~~~~~~~~~~vy~C---GP~~Mm--~av~~~l~~~~~~~~~~~ 138 (142)
T 3lyu_A 98 KVRELLESEDWDLVFMV---GPVGDQ--KQVFEVVKEYGVPMLEHH 138 (142)
T ss_dssp HHHHHHHSSCCSEEEEE---SCHHHH--HHHHHHHHHHTCCBC---
T ss_pred HHHHhcccCCCCEEEEE---CCHHHH--HHHHHHHHHcCCchhhhc
Confidence 44454444455667763 555333 268888888898776544
No 181
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=49.30 E-value=14 Score=17.14 Aligned_cols=15 Identities=40% Similarity=0.718 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhc
Q psy9352 64 LQQSLADLDQKFRAL 78 (146)
Q Consensus 64 l~~sL~~L~~~L~~~ 78 (146)
++.-|++|++.|+++
T Consensus 6 lykeledlqerlrkl 20 (27)
T 3twe_A 6 LYKELEDLQERLRKL 20 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566778888877754
No 182
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=49.28 E-value=53 Score=23.79 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=42.7
Q ss_pred EEEEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChhh--HHHHHHHHcCc
Q psy9352 40 LKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEE--VFPDIFKTWNI 102 (146)
Q Consensus 40 l~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~--~l~~l~~~~~~ 102 (146)
.-.+|+.|.... ++|......+.+.+.+.-+.|.+.|.+.+++.-+... .+.++.+..++
T Consensus 26 ~~~iy~~D~~~~---Pyg~~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTa~~~~~~~lr~~~~i 87 (255)
T 2jfz_A 26 DEIIYYGDSARV---PYGTKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQKYSKI 87 (255)
T ss_dssp SEEEEEECTTTC---CCTTSCHHHHHHHHHHHHHHHGGGCCSCEEECCHHHHHHTHHHHHHHCSS
T ss_pred CCEEEEeCCCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCC
Confidence 446688887543 4566667778888888888898999999998766554 45666555544
No 183
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=49.27 E-value=67 Score=22.69 Aligned_cols=65 Identities=23% Similarity=0.153 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEEC---Chhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 66 QSLADLDQKFRALGSRLYVVQG---KPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g---~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
+.+.++++.+++.|+.+..... ...+ ..-+++++.|+..|.+. .+.... +.+.+.+++.||.+..
T Consensus 61 ~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~--p~~~~l---~~l~~~a~~~gv~l~l 131 (257)
T 3lmz_A 61 EQIRAFHDKCAAHKVTGYAVGPIYMKSEEEIDRAFDYAKRVGVKLIVGV--PNYELL---PYVDKKVKEYDFHYAI 131 (257)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEECSHHHHHHHHHHHHHHTCSEEEEE--ECGGGH---HHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEeccccCCHHHHHHHHHHHHHhCCCEEEec--CCHHHH---HHHHHHHHHcCCEEEE
Confidence 5578899999999998866542 2222 33456778899999984 332222 2567777788987653
No 184
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=49.26 E-value=33 Score=23.30 Aligned_cols=38 Identities=8% Similarity=0.100 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCeEE-EEECChhhHHHHHHHHcCcc
Q psy9352 66 QSLADLDQKFRALGSRLY-VVQGKPEEVFPDIFKTWNIK 103 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~-v~~g~~~~~l~~l~~~~~~~ 103 (146)
..+.++.++++++|+.++ ++..+..+...+++++.+.+
T Consensus 65 p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~ 103 (173)
T 3mng_A 65 PGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAE 103 (173)
T ss_dssp HHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCC
Confidence 467888889999999998 48888888889999998875
No 185
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=49.14 E-value=18 Score=23.56 Aligned_cols=50 Identities=6% Similarity=-0.063 Sum_probs=24.2
Q ss_pred hHHHHHHHHc---CccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCe
Q psy9352 91 EVFPDIFKTW---NIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHT 140 (146)
Q Consensus 91 ~~l~~l~~~~---~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~ 140 (146)
....++.++. ++.--+.+-+..++..+..+.+.+......|+...++|..
T Consensus 28 ~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI~G~~ 80 (127)
T 3l4n_A 28 KGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVNGVS 80 (127)
T ss_dssp HHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEE
T ss_pred HHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEECCEE
Confidence 4455565552 3433333333333222333345444444668887777654
No 186
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=49.03 E-value=36 Score=22.13 Aligned_cols=44 Identities=7% Similarity=0.031 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEE
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTW 107 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 107 (146)
-.+..|.++.+++++.| .++.+..+..+.+.+++++++++--+.
T Consensus 53 ~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~~l 96 (159)
T 2a4v_A 53 RQASGFRDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPYHLL 96 (159)
T ss_dssp HHHHHHHHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSSEEE
T ss_pred HHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCceEE
Confidence 34577888999999889 888888777788899999988764444
No 187
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=49.02 E-value=77 Score=23.32 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC--Chhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQG--KPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
|+.+-+..+++.+++.|..+.+... ++.. .+..+ ...+++.|++...... + ...+.+.+.|+++..++
T Consensus 82 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l-~~~~vdGiIi~~~~~~-----~-~~~~~l~~~~iPvV~i~ 154 (344)
T 3kjx_A 82 VFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEM-LSWRPSGVIIAGLEHS-----E-AARAMLDAAGIPVVEIM 154 (344)
T ss_dssp SHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHH-HTTCCSEEEEECSCCC-----H-HHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHH-HhCCCCEEEEECCCCC-----H-HHHHHHHhCCCCEEEEe
Confidence 5567788888999999999988764 3332 23223 3468888887532211 1 23344567899999884
No 188
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=48.87 E-value=57 Score=21.77 Aligned_cols=58 Identities=7% Similarity=-0.012 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcC-CeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 68 LADLDQKFRALG-SRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 68 L~~L~~~L~~~g-~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
+.++-+.|++.| .++.+..+.+...+..+.+..++ +.++......|. .+..+++..|+
T Consensus 110 ~~~~l~~l~~~g~~~~~i~t~~~~~~~~~~l~~~~~~~~f~~~~~~~kpk~~------~~~~~~~~lgi 172 (234)
T 3ddh_A 110 VKETLKTLKETGKYKLVVATKGDLLDQENKLERSGLSPYFDHIEVMSDKTEK------EYLRLLSILQI 172 (234)
T ss_dssp HHHHHHHHHHHCCCEEEEEEESCHHHHHHHHHHHTCGGGCSEEEEESCCSHH------HHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhCcHhhhheeeecCCCCHH------HHHHHHHHhCC
Confidence 455666778889 99999987776666677776654 456554333322 55666666666
No 189
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=48.68 E-value=26 Score=21.80 Aligned_cols=48 Identities=8% Similarity=-0.051 Sum_probs=28.6
Q ss_pred hHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCee
Q psy9352 91 EVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTL 141 (146)
Q Consensus 91 ~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L 141 (146)
....++.++.++.-...+-+..+ ..++ .+.+......++...+++..+
T Consensus 37 ~~ak~~L~~~gi~~~~~dI~~~~--~~~~-~l~~~~g~~tvP~ifi~g~~i 84 (109)
T 3ipz_A 37 NTVVQILKNLNVPFEDVNILENE--MLRQ-GLKEYSNWPTFPQLYIGGEFF 84 (109)
T ss_dssp HHHHHHHHHTTCCCEEEEGGGCH--HHHH-HHHHHHTCSSSCEEEETTEEE
T ss_pred HHHHHHHHHcCCCcEEEECCCCH--HHHH-HHHHHHCCCCCCeEEECCEEE
Confidence 45677888888875555443332 2222 455544456788887777654
No 190
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=48.56 E-value=46 Score=20.63 Aligned_cols=42 Identities=21% Similarity=0.160 Sum_probs=29.0
Q ss_pred HHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 94 PDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 94 ~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
.+.+++-.+.-|+...+.+|.. +. .+...|+..+|++..+.+
T Consensus 28 ~kai~~gka~lViiA~D~~~~~--~~-~i~~~c~~~~vp~~~~~s 69 (101)
T 3v7q_A 28 IKEIRNARAKLVLLTEDASSNT--AK-KVTDKCNYYKVPYKKVES 69 (101)
T ss_dssp HHHHHTTCCSEEEEETTSCHHH--HH-HHHHHHHHTTCCEEEESC
T ss_pred HHHHhcCceeEEEEeccccccc--hh-hhcccccccCCCeeeech
Confidence 3455666788888888887652 22 567778888888887744
No 191
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=48.36 E-value=70 Score=22.62 Aligned_cols=69 Identities=7% Similarity=0.062 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC--Chh---hHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHh-CCCeEEEe
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQG--KPE---EVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE-YKVKVEQH 136 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~-~~i~~~~~ 136 (146)
|..+-+..+++.+++.|..+.+... ++. +.+..+. ..+++.|++...... +..+. .+.+ .||++..+
T Consensus 35 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~~-----~~~~~-~l~~~~~iPvV~~ 107 (296)
T 3brq_A 35 YFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLL-DLRCDAIMIYPRFLS-----VDEID-DIIDAHSQPIMVL 107 (296)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHH-HTTCSEEEEECSSSC-----HHHHH-HHHHTCSSCEEEE
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH-hcCCCEEEEecCCCC-----hHHHH-HHHhcCCCCEEEE
Confidence 5566677788888899999988753 333 2344444 458888887432211 11333 3456 79999888
Q ss_pred cC
Q psy9352 137 VS 138 (146)
Q Consensus 137 ~~ 138 (146)
+.
T Consensus 108 ~~ 109 (296)
T 3brq_A 108 NR 109 (296)
T ss_dssp SC
T ss_pred cc
Confidence 65
No 192
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=48.32 E-value=72 Score=22.75 Aligned_cols=70 Identities=11% Similarity=0.039 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--Chh---h---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeE
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG--KPE---E---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKV 133 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~---~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~ 133 (146)
.|+.+-+..+++.+++.|..+.+... ++. + .+..+ ...+++.|++...... +..+. .+.+.||++
T Consensus 21 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~-----~~~~~-~l~~~~iPv 93 (290)
T 2rgy_A 21 SYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFL-IGRDCDGVVVISHDLH-----DEDLD-ELHRMHPKM 93 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHH-HHTTCSEEEECCSSSC-----HHHHH-HHHHHCSSE
T ss_pred chHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHH-HhcCccEEEEecCCCC-----HHHHH-HHhhcCCCE
Confidence 37777888889999999999887753 222 2 33333 3568998887532221 11233 344578999
Q ss_pred EEecC
Q psy9352 134 EQHVS 138 (146)
Q Consensus 134 ~~~~~ 138 (146)
..++.
T Consensus 94 V~~~~ 98 (290)
T 2rgy_A 94 VFLNR 98 (290)
T ss_dssp EEESS
T ss_pred EEEcc
Confidence 88865
No 193
>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}
Probab=48.20 E-value=24 Score=23.55 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCcc
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIK 103 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 103 (146)
++.++-+.|++.|+++.+..+.+...+..+.+..++.
T Consensus 86 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~~~ 122 (219)
T 3kd3_A 86 GIKELVQDLKNKGFEIWIFSGGLSESIQPFADYLNIP 122 (219)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHcCCC
Confidence 4567777888899999999998888888888888873
No 194
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=48.02 E-value=79 Score=23.19 Aligned_cols=70 Identities=7% Similarity=0.049 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECC--hhhH--HHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQGK--PEEV--FPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g~--~~~~--l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
|+.+-+..+++.+++.|..+.+...+ +... +.+.+...+++.|++....... ...+.+.+.|+++..+++
T Consensus 76 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~------~~~~~l~~~~iPvV~~~~ 149 (339)
T 3h5o_A 76 VFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHAE------PFERILSQHALPVVYMMD 149 (339)
T ss_dssp TTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCT------THHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCCH------HHHHHHhcCCCCEEEEee
Confidence 55667778888999999999887643 3222 1222334688888875322211 233445678999998854
No 195
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=47.88 E-value=17 Score=23.58 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=23.3
Q ss_pred HHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 95 DIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 95 ~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
..+++-.+.-|+...+.+|.+... .+..+|++.||++..+.+
T Consensus 35 kaI~~gka~LVvIA~D~~p~~i~~--~l~~lC~~~~VP~~~v~s 76 (113)
T 3jyw_G 35 ALIENKKAKLVLIANDVDPIELVV--FLPALCKKMGVPYAIVKG 76 (113)
T ss_dssp HTTTTTCCSEEEECSCCSSHHHHT--THHHHHHHTTCCCEECSC
T ss_pred HHHHcCCceEEEEeCCCCHHHHHH--HHHHHHHHcCCCEEEECC
Confidence 444555566666666666543222 355566666666665544
No 196
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Probab=53.49 E-value=3.9 Score=29.91 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEee
Q psy9352 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEY 109 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~ 109 (146)
+..+..++=+.|++.|+++.++.|++......++++.+++.++..-
T Consensus 137 ~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~f~~~ 182 (263)
T 2yj3_A 137 PRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEYYSNL 182 (263)
Confidence 3455566667788899999999999998888999999988777643
No 197
>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0
Probab=47.66 E-value=17 Score=25.58 Aligned_cols=64 Identities=13% Similarity=0.071 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcC-----ccEEEEeeecChhHHHHHHHHHHHHHhCCCe
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWN-----IKLLTWEYDIEPYAKKRDGLVEDMAKEYKVK 132 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~-----~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~ 132 (146)
+.++-+.|++.|+++.+..+.+...+..+.+..+ .+.++...+... .+-.-..+..+++..|+.
T Consensus 116 ~~~~l~~l~~~g~~~~i~tn~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~kp~~~~~~~~~~~lgi~ 184 (277)
T 3iru_A 116 WKEVFDKLIAQGIKVGGNTGYGPGMMAPALIAAKEQGYTPASTVFATDVVR-GRPFPDMALKVALELEVG 184 (277)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHTTCCCSEEECGGGSSS-CTTSSHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHcCCeEEEEeCCchHHHHHHHHhcCcccCCCceEecHHhcCC-CCCCHHHHHHHHHHcCCC
Confidence 4455667888899999998877766666665433 455655544321 121122566666666654
No 198
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=47.39 E-value=29 Score=23.00 Aligned_cols=43 Identities=12% Similarity=0.009 Sum_probs=26.8
Q ss_pred HHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 94 PDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 94 ~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
.+.+++-.+.-|+...+.+|.+... .+...|++.||++..+.+
T Consensus 41 ~kai~~gkakLViiA~D~~p~~~~~--~l~~lc~~~~VP~~~v~s 83 (134)
T 2ale_A 41 TKTLNRGISEFIIMAADCEPIEILL--HLPLLCEDKNVPYVFVPS 83 (134)
T ss_dssp HHHHHHTCEEEEEEETTCSSGGGGT--HHHHHHHHHTCCEEEESC
T ss_pred HHHHHhCCCeEEEEeCCCCHHHHHH--HHHHHHHhcCCCEEEECC
Confidence 3445556677777777777653322 466677777777766644
No 199
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=47.27 E-value=72 Score=22.50 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCeEEEEEC------ChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEE
Q psy9352 66 QSLADLDQKFRALGSRLYVVQG------KPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVE 134 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g------~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~ 134 (146)
+.+.++++.+++.|+.+..... +.....-+++++.|+..|.+.. +.... +.+.+.+++.||.+.
T Consensus 63 ~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~~--~~~~~---~~l~~~a~~~gv~l~ 132 (262)
T 3p6l_A 63 QTQKEIKELAASKGIKIVGTGVYVAEKSSDWEKMFKFAKAMDLEFITCEP--ALSDW---DLVEKLSKQYNIKIS 132 (262)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECCSSTTHHHHHHHHHHHTTCSEEEECC--CGGGH---HHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEeccCCccHHHHHHHHHHHHHcCCCEEEecC--CHHHH---HHHHHHHHHhCCEEE
Confidence 4588899999999999866542 1223445677889999999853 32222 357777788898764
No 200
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=47.01 E-value=21 Score=27.83 Aligned_cols=38 Identities=8% Similarity=0.069 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEE
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLL 105 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v 105 (146)
+..+++-|+..|++.++..|+..+++..|++...+..|
T Consensus 137 ~~~~~~lL~~~Gi~~i~apgEADd~iA~La~~g~~~~i 174 (379)
T 1ul1_X 137 NDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAA 174 (379)
T ss_dssp HHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEE
T ss_pred HHHHHHHHHHcCCCeecCCCcHHHHHHHHHhcCCeEEE
Confidence 56778888999999999999999999999987555434
No 201
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=46.86 E-value=76 Score=22.63 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhcCC-eEEEEEC--Chhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 62 RFLQQSLADLDQKFRALGS-RLYVVQG--KPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~-~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
.|..+-+..+++.++++|. .+.+... ++.. .+..+. ..+++.|++.... +.. .+ ...+.+.+.||++..
T Consensus 15 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~vdgiii~~~~-~~~--~~-~~~~~~~~~~iPvV~ 89 (309)
T 2fvy_A 15 NFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLL-AKGVKALAINLVD-PAA--AG-TVIEKARGQNVPVVF 89 (309)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCSS-GGG--HH-HHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHH-HcCCCEEEEeCCC-cch--hH-HHHHHHHHCCCcEEE
Confidence 4777888889999999997 8888763 3432 333343 4689988884321 111 11 223345568999998
Q ss_pred ecCC
Q psy9352 136 HVSH 139 (146)
Q Consensus 136 ~~~~ 139 (146)
++..
T Consensus 90 ~~~~ 93 (309)
T 2fvy_A 90 FNKE 93 (309)
T ss_dssp ESSC
T ss_pred ecCC
Confidence 8753
No 202
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=46.75 E-value=72 Score=22.32 Aligned_cols=72 Identities=10% Similarity=-0.046 Sum_probs=48.5
Q ss_pred HHHHHHH--hcCCeEEEEECChhhHHHHHHHHc--C-ccEEEEeee-cChhHHHHHHHHHHHHHhCCCeEEEecCCeeee
Q psy9352 70 DLDQKFR--ALGSRLYVVQGKPEEVFPDIFKTW--N-IKLLTWEYD-IEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLYN 143 (146)
Q Consensus 70 ~L~~~L~--~~g~~L~v~~g~~~~~l~~l~~~~--~-~~~v~~~~~-~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~~ 143 (146)
.+++..+ ++|+.+.++..+.+..|-..+.+. . ++.|+.|-- |+.... +++.++...++++..++-+.++.
T Consensus 42 ~l~~~a~~~~~g~~l~~~QSN~EGeLId~Ih~a~~~~~dgIIINpgAyTHtSv----AlrDAl~~v~~P~VEVHiSNi~a 117 (176)
T 2c4w_A 42 IMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSEYEGIIINPGAFSHTSI----AIADAIMLAGKPVIEVHLTNIQA 117 (176)
T ss_dssp HHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHSSSCCEEEEECGGGGGTCH----HHHHHHHTSSSCEEEEESSCGGG
T ss_pred HHHHHhccccCCCEEEEEeeCcHHHHHHHHHHhccCCeeEEEECcchhccchH----HHHHHHHhCCCCEEEEEecCccc
Confidence 3344445 678899999988776555555442 3 788999864 233322 57777777889999998777665
Q ss_pred CC
Q psy9352 144 TN 145 (146)
Q Consensus 144 p~ 145 (146)
.+
T Consensus 118 RE 119 (176)
T 2c4w_A 118 RE 119 (176)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 203
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=46.58 E-value=59 Score=28.60 Aligned_cols=37 Identities=8% Similarity=0.124 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCcc
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIK 103 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 103 (146)
...+.-+.|++.|+...++.||....-..++++.|+.
T Consensus 539 ea~~aI~~l~~aGI~v~MiTGD~~~TA~aIA~~lGI~ 575 (920)
T 1mhs_A 539 DTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLG 575 (920)
T ss_dssp HHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHTSS
T ss_pred cHHHHHHHHhhcCceEEEEcCCCHHHHHHHHHHcCCC
Confidence 3444455677789999999999999999999999985
No 204
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=46.53 E-value=30 Score=21.59 Aligned_cols=48 Identities=17% Similarity=0.052 Sum_probs=27.4
Q ss_pred hHHHHHHHHcCccEEEEeee------cChhHHHHHHHHHHHHHhCCCeEEEecCC
Q psy9352 91 EVFPDIFKTWNIKLLTWEYD------IEPYAKKRDGLVEDMAKEYKVKVEQHVSH 139 (146)
Q Consensus 91 ~~l~~l~~~~~~~~v~~~~~------~~~~~~~rd~~v~~~~~~~~i~~~~~~~~ 139 (146)
+.|.+++++++++.|+.--. .++....-. ...+.+++.+++++.+|-.
T Consensus 41 ~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~-~f~~~L~~~~lpV~~~DER 94 (98)
T 1iv0_A 41 EALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVL-PLVEALRARGVEVELWDER 94 (98)
T ss_dssp HHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTH-HHHHHHHHTTCEEEEECCS
T ss_pred HHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHH-HHHHHHhcCCCCEEEECCC
Confidence 56778888888888887522 222222222 3333333337888877643
No 205
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=46.52 E-value=51 Score=24.52 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=21.6
Q ss_pred HHHHHHHcCccEEEEeee-cChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 93 FPDIFKTWNIKLLTWEYD-IEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 93 l~~l~~~~~~~~v~~~~~-~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
+..|++.+|.+.+..... -+|- -.+-..+.+.+++.+|++..++
T Consensus 200 f~Yf~~~yGl~~~~~~~~~~eps-~~~l~~l~~~ik~~~v~~If~e 244 (291)
T 1pq4_A 200 WAYFARDYNLVQIPIEVEGQEPS-AQELKQLIDTAKENNLTMVFGE 244 (291)
T ss_dssp CHHHHHHTTCEEEESCBTTBCCC-HHHHHHHHHHHHTTTCCEEEEE
T ss_pred hHHHHHHCCCEEeecccCCCCCC-HHHHHHHHHHHHHcCCCEEEEe
Confidence 556666666665543211 1121 1222355555666666665554
No 206
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=46.40 E-value=23 Score=26.93 Aligned_cols=39 Identities=8% Similarity=0.014 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEE
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLL 105 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v 105 (146)
-+..+++-|+..|++.+...|+..+++..|+++-.+..|
T Consensus 131 ~~~~~~~lL~~~gi~~i~apgEAD~~ia~La~~g~~~~I 169 (326)
T 1a76_A 131 MVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAV 169 (326)
T ss_dssp HHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHHHHHHcCCCeEECCccHHHHHHHHHHCCCEEEE
Confidence 467788888999999999999999999999887333444
No 207
>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*
Probab=46.34 E-value=12 Score=28.67 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHH----cCc--cEEEE
Q psy9352 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT----WNI--KLLTW 107 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~----~~~--~~v~~ 107 (146)
+....+|-+.|++.|+..+|+.+.+.+.+.-+++. +|| ++|+-
T Consensus 145 ~~~~~~l~~~l~~~G~~v~ivSas~~~~v~~~a~~~~~~ygIp~e~ViG 193 (327)
T 4as2_A 145 FSGQRELYNKLMENGIEVYVISAAHEELVRMVAADPRYGYNAKPENVIG 193 (327)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHTCGGGSCCCCGGGEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhhcccccCCCHHHeEe
Confidence 45578899999999999999999999999888876 555 45554
No 208
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=46.10 E-value=51 Score=20.38 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=26.8
Q ss_pred HHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 95 DIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 95 ~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
+.+++-.+.-|+...+.++.. +. .+...|+..+|++..+.+
T Consensus 28 kai~~gka~lViiA~D~~~~~--~~-~i~~~c~~~~ip~~~~~s 68 (101)
T 3on1_A 28 KAVQNGQVTLVILSSDAGIHT--KK-KLLDKCGSYQIPVKVVGN 68 (101)
T ss_dssp HHHHTTCCSEEEEETTSCHHH--HH-HHHHHHHHHTCCEEEESC
T ss_pred HHHHcCCCcEEEEeCCCCHHH--HH-HHHHHHHHcCCCEEEeCC
Confidence 444555677788777777652 22 567777777888776543
No 209
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=45.96 E-value=78 Score=22.50 Aligned_cols=72 Identities=10% Similarity=0.016 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC----hhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEE
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQGK----PEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVE 134 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~----~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~ 134 (146)
.|+.+-+..+++.++++|..+.+...+ +.. .+..+.. .+++.|++...... .. ...+. .+. .||++.
T Consensus 18 ~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vdgiii~~~~~~-~~--~~~~~-~~~-~~iPvV 91 (304)
T 3o1i_D 18 SYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQ-WGANAIILGTVDPH-AY--EHNLK-SWV-GNTPVF 91 (304)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHH-HTCSEEEECCSSTT-SS--TTTHH-HHT-TTSCEE
T ss_pred cHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChh-HH--HHHHH-HHc-CCCCEE
Confidence 477777888889999999999988743 222 3333443 58898887532221 00 11233 345 799999
Q ss_pred EecCC
Q psy9352 135 QHVSH 139 (146)
Q Consensus 135 ~~~~~ 139 (146)
.++..
T Consensus 92 ~~~~~ 96 (304)
T 3o1i_D 92 ATVNQ 96 (304)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 88643
No 210
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=45.85 E-value=23 Score=27.25 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCcc
Q psy9352 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIK 103 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 103 (146)
.+-+..+++-|+..|++.++..|++.+++..|+++-.+.
T Consensus 134 ~~q~~~~~~lL~~~gip~i~ap~EADd~ia~La~~g~v~ 172 (341)
T 3q8k_A 134 KQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVY 172 (341)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHcCCCEEECCccHHHHHHHHHhcCCeE
Confidence 445677888899999999999999999999998864443
No 211
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=45.77 E-value=35 Score=23.42 Aligned_cols=39 Identities=13% Similarity=-0.055 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCe-EEEEECChhhHHHHHHHHcCcc
Q psy9352 65 QQSLADLDQKFRALGSR-LYVVQGKPEEVFPDIFKTWNIK 103 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~~~ 103 (146)
+..|.++.+++++.|+. ++.+..+..+...+++++.+++
T Consensus 77 ~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~ 116 (184)
T 3uma_A 77 LPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGM 116 (184)
T ss_dssp HHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCC
Confidence 45688888999999999 8888888778889999998886
No 212
>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6
Probab=45.66 E-value=42 Score=22.73 Aligned_cols=64 Identities=13% Similarity=0.002 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhc-CCeEEEEECChhhHHHHHHHHcCcc----EEEEeeecChhHHHHHHHHHHHHHhCC
Q psy9352 67 SLADLDQKFRAL-GSRLYVVQGKPEEVFPDIFKTWNIK----LLTWEYDIEPYAKKRDGLVEDMAKEYK 130 (146)
Q Consensus 67 sL~~L~~~L~~~-g~~L~v~~g~~~~~l~~l~~~~~~~----~v~~~~~~~~~~~~rd~~v~~~~~~~~ 130 (146)
++.++=+.|++. |+++.+..+.+........+..++. .+++..+..+........+..++++.|
T Consensus 97 ~~~~~l~~l~~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~~k~~~~~~~~~~~~lg 165 (234)
T 2hcf_A 97 GVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPGIDHYFPFGAFADDALDRNELPHIALERARRMTG 165 (234)
T ss_dssp THHHHHHHHHTCTTEEEEEECSSCHHHHHHHHHTTTCSTTCSCEECTTTCSSGGGHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhCCCceEEEEcCCcHHHHHHHHHHCCchhhcCcceecCCCcCccchHHHHHHHHHHHhC
Confidence 455566677888 8999988888777777777776654 333333332222122224555666656
No 213
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=45.55 E-value=48 Score=24.50 Aligned_cols=66 Identities=12% Similarity=0.127 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECChhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
.|+.+-+..+++.+++.|..+.+...+..+ .+.+.+...+++.|++... .+.+.+.|+++..++.
T Consensus 77 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~------------~~~~~~~~iPvV~~~~ 144 (333)
T 3jvd_A 77 EYYSESLQTIQQDLKAAGYQMLVAEANSVQAQDVVMESLISIQAAGIIHVPV------------VGSIAPEGIPMVQLTR 144 (333)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHHHHTCSEEEECCC------------TTCCC-CCSCEEEECC
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHHHhCCCCEEEEcch------------HHHHhhCCCCEEEECc
Confidence 477788888999999999999888744322 1223333458888887532 1223457899888765
Q ss_pred C
Q psy9352 139 H 139 (146)
Q Consensus 139 ~ 139 (146)
.
T Consensus 145 ~ 145 (333)
T 3jvd_A 145 G 145 (333)
T ss_dssp -
T ss_pred c
Confidence 4
No 214
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=45.49 E-value=64 Score=23.95 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=40.5
Q ss_pred eEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 81 RLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 81 ~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
+..+..|.- .+..+++.-.+.-|+...|.+|.+... .+-.+|++.||++..+.+
T Consensus 122 p~~lk~Gvn--eVtKaIekgKAqLVVIA~DvdPielv~--~LPaLCee~~VPY~~V~s 175 (255)
T 4a17_F 122 PIVLKYGLN--HITTLIENKQAKLVVIAHDVDPIELVI--FLPQLCRKNDVPFAFVKG 175 (255)
T ss_dssp CCCEEECHH--HHHHHHHTSCCSEEEEESCCSSTHHHH--HHHHHHHHTTCCEEEESC
T ss_pred CceeecchH--HHHHHHHcCCceEEEEeCCCChHHHHH--HHHHHHHHcCCCEEEECC
Confidence 455666633 345777878889999999998875543 577889999999988875
No 215
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=45.19 E-value=72 Score=21.87 Aligned_cols=74 Identities=12% Similarity=-0.039 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHHc--CccEEEEeeec-ChhHHHHHHHHHHHHHhCC-CeEEEecCCeeee
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW--NIKLLTWEYDI-EPYAKKRDGLVEDMAKEYK-VKVEQHVSHTLYN 143 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~--~~~~v~~~~~~-~~~~~~rd~~v~~~~~~~~-i~~~~~~~~~L~~ 143 (146)
...+++..+++|+.+.+++.+.+..|-..+.+. +++.|+.|--. +.... +++.+++.-+ +++..++-+.++.
T Consensus 37 ~~~l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSv----AlrDAl~~v~~~P~VEVHiSNi~a 112 (156)
T 1gtz_A 37 EALCVKAAAAHGGTVDFRQSNHEGELVDWIHEARLNHCGIVINPAAYSHTSV----AILDALNTCDGLPVVEVHISNIHQ 112 (156)
T ss_dssp HHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHCSEEEEECTTHHHHCH----HHHHHHHTSTTCCEEEEESSCGGG
T ss_pred HHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccH----HHHHHHHhcCCCCEEEEEecCccc
Confidence 334444445779999999987775555554432 47889997532 22222 6777777777 9999998777665
Q ss_pred CC
Q psy9352 144 TN 145 (146)
Q Consensus 144 p~ 145 (146)
.+
T Consensus 113 RE 114 (156)
T 1gtz_A 113 RE 114 (156)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 216
>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A
Probab=45.12 E-value=51 Score=22.99 Aligned_cols=62 Identities=5% Similarity=-0.002 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
++.++=+.|+ |+++.+..+.+...+..+.+..++ +.+++..+.... +..-..+..++++.|+
T Consensus 97 ~~~~~l~~l~--g~~~~i~t~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~~-Kp~~~~~~~~~~~~~~ 162 (253)
T 1qq5_A 97 DAAQCLAELA--PLKRAILSNGAPDMLQALVANAGLTDSFDAVISVDAKRVF-KPHPDSYALVEEVLGV 162 (253)
T ss_dssp THHHHHHHHT--TSEEEEEESSCHHHHHHHHHHTTCGGGCSEEEEGGGGTCC-TTSHHHHHHHHHHHCC
T ss_pred cHHHHHHHHc--CCCEEEEeCcCHHHHHHHHHHCCchhhccEEEEccccCCC-CCCHHHHHHHHHHcCC
Confidence 3344444555 899999998888888888887774 566665544211 1111255556666565
No 217
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=44.76 E-value=64 Score=21.23 Aligned_cols=43 Identities=9% Similarity=-0.036 Sum_probs=29.6
Q ss_pred HHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 94 PDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 94 ~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
.+.+++-.+.-|+...+.+|.+.. +.+...|+..+|++..+.+
T Consensus 50 ~kal~~gkaklViiA~D~~~~~~~--~~l~~lc~~~~IP~~~v~s 92 (135)
T 2aif_A 50 TKALNRGIAEIVLLAADAEPLEIL--LHLPLVCEDKNTPYVFVRS 92 (135)
T ss_dssp HHHHHTTCEEEEEEETTCSCHHHH--HHHHHHHHHTTCCEEEESC
T ss_pred HHHHHcCCCeEEEEecCCChHHHH--hHHHHHHHhcCCcEEEECC
Confidence 344455677888888888776432 2577788888888877654
No 218
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography; 1.80A {Brucella melitensis biovar}
Probab=44.66 E-value=87 Score=23.06 Aligned_cols=45 Identities=7% Similarity=0.102 Sum_probs=23.8
Q ss_pred hhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 90 EEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 90 ~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
.+.+.++++..++.-++..-+|.+...+ ..+...|++.||.+..+
T Consensus 166 ~~~l~~~~~~~~~~p~~~Q~~~~~~~~~--~~l~~~~~~~gi~v~a~ 210 (283)
T 3o0k_A 166 TADLERLIKESGVTPVLNQIELHPQFQQ--DELRLFHGKHDIATEAW 210 (283)
T ss_dssp HHHHHHHHHHHSCCCSEEEEECBTTBCC--HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHhCCCCeEEEEeecCcccCc--HHHHHHHHHCCcEEEEe
Confidence 3444445444444333333445444332 35777777888877765
No 219
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=44.42 E-value=82 Score=27.69 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCcc
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIK 103 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 103 (146)
..+.-+.|++.|++..++.|+.......++++.|+.
T Consensus 608 ~~~~I~~l~~~Gi~v~miTGD~~~ta~~ia~~lgi~ 643 (995)
T 3ar4_A 608 VMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 643 (995)
T ss_dssp HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHcCCEEEEECCCCHHHHHHHHHHcCcC
Confidence 445556677789999999999999999999999884
No 220
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=44.41 E-value=52 Score=23.70 Aligned_cols=68 Identities=6% Similarity=-0.053 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCeEEEEE-CChh---hHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCC
Q psy9352 68 LADLDQKFRALGSRLYVVQ-GKPE---EVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSH 139 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~-g~~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~ 139 (146)
++.+++.+++.|+++.... .+.. +.+.+|. -+.++|++..+..-... -+.+.+.....+|++..|++.
T Consensus 151 ~~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~--~~~dai~~~~D~~a~g~--~~~l~~~~~~~~i~vig~d~~ 222 (295)
T 3lft_A 151 VEEFKAYAEKAGLTVETFAVPSTNEIASTVTVMT--SKVDAIWVPIDNTIASG--FPTVVSSNQSSKKPIYPSATA 222 (295)
T ss_dssp HHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHT--TTCSEEEECSCHHHHHT--HHHHHHHTTTTCCCEEESSHH
T ss_pred HHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHHH--hcCCEEEECCchhHHHH--HHHHHHHHHHcCCCEEeCCHH
Confidence 4566777888899875443 2222 2334443 26899999765432211 123444434567898888764
No 221
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=43.90 E-value=37 Score=21.88 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=23.2
Q ss_pred HHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 95 DIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 95 ~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
+.+++-.+.-|+...+.+|.+... .+...|++.+|++..+.
T Consensus 39 kai~~gka~lViiA~D~~p~~~~~--~l~~lc~~~~VP~~~v~ 79 (120)
T 1xbi_A 39 KAVERGIAKLVIIAEDVKPEEVVA--HLPYLCEEKGIPYAYVA 79 (120)
T ss_dssp HHHHHTCCSEEEEESCCSSGGGTT--THHHHHHHHTCCEEEES
T ss_pred HHHHcCCceEEEEcCCCChHHHHH--HHHHHHHhcCCCEEEeC
Confidence 344445666666666666553222 45666666666665544
No 222
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=43.82 E-value=91 Score=22.68 Aligned_cols=71 Identities=10% Similarity=0.031 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhc-CCeEEEEEC--Chhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 63 FLQQSLADLDQKFRAL-GSRLYVVQG--KPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~-g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
|..+-+..+++.+++. |..+.+... ++.. .+..+. ..+++.|++... ... ..+..+ +.+.+.||++..+
T Consensus 19 ~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~-~~~--~~~~~~-~~~~~~~iPvV~~ 93 (325)
T 2x7x_A 19 WRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFM-DEGVDLLIISAN-EAA--PMTPIV-EEAYQKGIPVILV 93 (325)
T ss_dssp HHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCS-SHH--HHHHHH-HHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEeCC-CHH--HHHHHH-HHHHHCCCeEEEe
Confidence 6667777888888898 999988763 3332 344444 468999888532 111 112233 3445689999988
Q ss_pred cC
Q psy9352 137 VS 138 (146)
Q Consensus 137 ~~ 138 (146)
+.
T Consensus 94 ~~ 95 (325)
T 2x7x_A 94 DR 95 (325)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 223
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=43.69 E-value=92 Score=22.68 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=41.6
Q ss_pred EEEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChhh--HHHHHHHHcCc
Q psy9352 41 KPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEE--VFPDIFKTWNI 102 (146)
Q Consensus 41 ~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~--~l~~l~~~~~~ 102 (146)
-.+|+.|.... ++|......+.+-+.+.-+.|.+.|.+.+++.-+... .+..+-+..++
T Consensus 30 ~~iy~~D~~~~---Pyg~~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~i 90 (267)
T 2gzm_A 30 RIIYLGDTARC---PYGPRSREEVRQFTWEMTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPI 90 (267)
T ss_dssp CEEEEECTTTC---CCTTSCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSS
T ss_pred CEEEecCCCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCC
Confidence 36788887543 4566656677777777778888899999999766654 56666665544
No 224
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=43.68 E-value=76 Score=23.63 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeE
Q psy9352 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKV 133 (146)
Q Consensus 69 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~ 133 (146)
.++-+.+.+.|..+++..-+..+.+.++.+ .|++.|+++. |. .+.+.+++.|+.+
T Consensus 258 ~~~v~~~~~~Gl~V~~WTVn~~~~~~~l~~-~GVDgIiTD~---P~------~~~~~l~~~g~~~ 312 (313)
T 3l12_A 258 PELVAEAHDLGLIVLTWTVNEPEDIRRMAT-TGVDGIVTDY---PG------RTQRILIDMGLSW 312 (313)
T ss_dssp HHHHHHHHHTTCEEEEBCCCSHHHHHHHHH-HTCSEEEESC---HH------HHHHHHHHTTCBC
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHHH-cCCCEEEeCC---HH------HHHHHHHhcCcCc
Confidence 456677788899999887666677666664 6999999954 32 4555666777643
No 225
>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}
Probab=43.10 E-value=33 Score=24.52 Aligned_cols=64 Identities=13% Similarity=0.111 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhc-CCeEEEEECChhhHHHHHHHHcCc---cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 67 SLADLDQKFRAL-GSRLYVVQGKPEEVFPDIFKTWNI---KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 67 sL~~L~~~L~~~-g~~L~v~~g~~~~~l~~l~~~~~~---~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
++.++=+.|++. |+++.+..+.+...+..+.+..+. +.+++..+... .+..-..+..+++..|+
T Consensus 118 g~~~~L~~l~~~~g~~l~i~T~~~~~~~~~~l~~~~l~~f~~i~~~~~~~~-~kp~~~~~~~~~~~lgi 185 (275)
T 2qlt_A 118 GAVKLCNALNALPKEKWAVATSGTRDMAKKWFDILKIKRPEYFITANDVKQ-GKPHPEPYLKGRNGLGF 185 (275)
T ss_dssp THHHHHHHHHTSCGGGEEEECSSCHHHHHHHHHHHTCCCCSSEECGGGCSS-CTTSSHHHHHHHHHTTC
T ss_pred CHHHHHHHHHhccCCeEEEEeCCCHHHHHHHHHHcCCCccCEEEEcccCCC-CCCChHHHHHHHHHcCC
Confidence 455555667778 888888888777766777766654 34444333211 11111245666666676
No 226
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=42.85 E-value=59 Score=22.87 Aligned_cols=39 Identities=15% Similarity=0.132 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCC-eEEEEECChhhHHHHHHHHcCcc
Q psy9352 65 QQSLADLDQKFRALGS-RLYVVQGKPEEVFPDIFKTWNIK 103 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~ 103 (146)
+..|.++.+++++.|+ .++.+..++.+...+++++.+..
T Consensus 54 ~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 93 (241)
T 1nm3_A 54 LPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSE 93 (241)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCC
Confidence 4668888899999999 89988888778889999998875
No 227
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}
Probab=42.85 E-value=20 Score=24.72 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc------cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI------KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~------~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
++.++-+.|++.|+++.+..+.+...+....+. ++ +.++...+... .+-.-..+..+++..|+
T Consensus 112 ~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~-~l~~~f~~~~~~~~~~~~~-~kp~~~~~~~~~~~lg~ 180 (247)
T 3dv9_A 112 GALEVLTKIKSEGLTPMVVTGSGQTSLLDRLNH-NFPGIFQANLMVTAFDVKY-GKPNPEPYLMALKKGGF 180 (247)
T ss_dssp THHHHHHHHHHTTCEEEEECSCC---CHHHHHH-HSTTTCCGGGEECGGGCSS-CTTSSHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHcCCcEEEEcCCchHHHHHHHHh-hHHHhcCCCeEEecccCCC-CCCCCHHHHHHHHHcCC
Confidence 345666778888999999987765544454444 43 44555443321 11111245556666565
No 228
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=42.76 E-value=56 Score=19.98 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=28.2
Q ss_pred hhHHHHHHHHcCccEEEEeeecC-hhHHHHHHHHHHHHHhCCCeEEEecCCee
Q psy9352 90 EEVFPDIFKTWNIKLLTWEYDIE-PYAKKRDGLVEDMAKEYKVKVEQHVSHTL 141 (146)
Q Consensus 90 ~~~l~~l~~~~~~~~v~~~~~~~-~~~~~rd~~v~~~~~~~~i~~~~~~~~~L 141 (146)
-.....+.++.++.--+.+-+.. +...+....+.+......++...++|..+
T Consensus 32 C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~i 84 (113)
T 3rhb_A 32 CTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHI 84 (113)
T ss_dssp HHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEETTEEE
T ss_pred HHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEECCEEE
Confidence 35677788888887555544332 11122222344433345688887776554
No 229
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=42.62 E-value=90 Score=22.29 Aligned_cols=67 Identities=1% Similarity=-0.004 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCeEEEEECCh-----hhHHHHHHHHc----CccEEEEeeecChhHHHHHHHHHHHHHhCCC------
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKP-----EEVFPDIFKTW----NIKLLTWEYDIEPYAKKRDGLVEDMAKEYKV------ 131 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~-----~~~l~~l~~~~----~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i------ 131 (146)
-+.-+.+.|++.|+++.+..++. .+.+.++.+.. ..++|++..+..-. .+.+++++.|+
T Consensus 149 R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~A~------g~~~al~~~g~~vP~di 222 (295)
T 3hcw_A 149 RIQGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAIISLDAMLHL------AILSVLYELNIEIPKDV 222 (295)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEESSHHHHH------HHHHHHHHTTCCTTTTE
T ss_pred HHHHHHHHHHHcCCCeeEEeccCCHHHHHHHHHHHHhhcccCCCCcEEEECChHHHH------HHHHHHHHcCCCCCCce
Confidence 34556777788898887666432 23456666655 68899986543211 34445555554
Q ss_pred eEEEecCC
Q psy9352 132 KVEQHVSH 139 (146)
Q Consensus 132 ~~~~~~~~ 139 (146)
.+..|++.
T Consensus 223 ~vig~D~~ 230 (295)
T 3hcw_A 223 MTATFNDS 230 (295)
T ss_dssp EEEEECCS
T ss_pred EEEEeCCh
Confidence 47777764
No 230
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=42.48 E-value=48 Score=22.27 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCeEEEEE------CChhh-------HHHHHHHHcCccEEEEeeecChhHH
Q psy9352 68 LADLDQKFRALGSRLYVVQ------GKPEE-------VFPDIFKTWNIKLLTWEYDIEPYAK 116 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~------g~~~~-------~l~~l~~~~~~~~v~~~~~~~~~~~ 116 (146)
...|.+-+++.+...+++- |.... ....|.++.++..+++++.+++.+-
T Consensus 44 ~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~Ts~~A 105 (150)
T 1vhx_A 44 LSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLTTMAA 105 (150)
T ss_dssp HHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSCHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCCHHHH
Confidence 3444444555666666554 32221 1224444557777888888876533
No 231
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=42.45 E-value=51 Score=21.12 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=27.0
Q ss_pred HHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 95 DIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 95 ~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
+.+++-.+.-|+...+.+|.+... .+...|++.+|++..+.+
T Consensus 39 kal~~gka~lViiA~D~~~~~~~~--~l~~lc~~~~Vp~~~~~s 80 (120)
T 1vq8_F 39 KSIERGSAELVFVAEDVQPEEIVM--HIPELADEKGVPFIFVEQ 80 (120)
T ss_dssp HHHHHTCCSEEEEESCCSSGGGTT--THHHHHHTTCCCEEEESC
T ss_pred HHHHcCCceEEEEeCCCChHHHHH--HHHHHHHhcCCCEEEECC
Confidence 444555677777777777654322 466777777887765543
No 232
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=42.13 E-value=29 Score=27.04 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHH
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~ 99 (146)
+..+++-|+..|++.+...|++.+.+..|+++
T Consensus 146 ~~~i~~lL~~~GIp~i~apgEADaqiA~La~~ 177 (363)
T 3ory_A 146 VRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKK 177 (363)
T ss_dssp HHHHHHHHHHHTCCEEECSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCEEEeCccHHHHHHHHHHC
Confidence 77888889999999999999888888888864
No 233
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=42.09 E-value=1.1e+02 Score=23.02 Aligned_cols=70 Identities=16% Similarity=0.121 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhc-------CCeEEEEECChhhHHHHHHHHcCccEEEEe---eecChhHHHHHHHHHHHHHhCCCeE
Q psy9352 64 LQQSLADLDQKFRAL-------GSRLYVVQGKPEEVFPDIFKTWNIKLLTWE---YDIEPYAKKRDGLVEDMAKEYKVKV 133 (146)
Q Consensus 64 l~~sL~~L~~~L~~~-------g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~---~~~~~~~~~rd~~v~~~~~~~~i~~ 133 (146)
+.+.|.+|.+++++. +..+++.+. .+..|++.+|.+.++.. .+-+|-. .+-..+.+.+++.+|++
T Consensus 168 ~~~~L~~Ld~~~~~~l~~~p~~~~~~v~~H~----af~Yfa~~yGl~~~~~~~i~~~~ePs~-~~l~~l~~~ik~~~v~~ 242 (307)
T 3ujp_A 168 YSEQLKAIDRQLGADLEQVPANQRFLVSCEG----AFSYLARDYGMEEIYMWPINAEQQFTP-KQVQTVIEEVKTNNVPT 242 (307)
T ss_dssp HHHHHHHHHHHHHHHHSSSCGGGCEEEEEES----TTHHHHHHTTCEEEEEESSCCSSCCCH-HHHHHHHHHHHTTTCSE
T ss_pred HHHHHHHHHHHHHHHHhhccccCCEEEEECc----hHHHHHHHCCCcEEEeeccCCCCCCCH-HHHHHHHHHHHhcCCcE
Confidence 345566666666442 233444332 35677777777766542 1222322 22235666677777777
Q ss_pred EEecC
Q psy9352 134 EQHVS 138 (146)
Q Consensus 134 ~~~~~ 138 (146)
..++.
T Consensus 243 If~e~ 247 (307)
T 3ujp_A 243 IFCES 247 (307)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 66553
No 234
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=42.02 E-value=93 Score=22.25 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEEC--------C------------h---------hhHHHHHHHHcCccEEEEee
Q psy9352 66 QSLADLDQKFRALGSRLYVVQG--------K------------P---------EEVFPDIFKTWNIKLLTWEY 109 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g--------~------------~---------~~~l~~l~~~~~~~~v~~~~ 109 (146)
+.+.++++.+++.|+.+..... + + ....-+++++.|+..|.+..
T Consensus 51 ~~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~ 123 (290)
T 3tva_A 51 EHAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAEMKEISDFASWVGCPAIGLHI 123 (290)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHHHHHHTCSEEEECC
T ss_pred HHHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 5688999999999999887742 1 1 11234556778999998853
No 235
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=41.81 E-value=1e+02 Score=22.75 Aligned_cols=71 Identities=4% Similarity=0.039 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--Chhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG--KPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
.|+.+-+..+++.+++.|..+.+... ++.. .+..+ ...+++.|++...... +..+ +.+.+.|+++..+
T Consensus 79 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiI~~~~~~~-----~~~~-~~l~~~~iPvV~i 151 (348)
T 3bil_A 79 HYFAAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFL-TSHGVDGIICVPNEEC-----ANQL-EDLQKQGMPVVLV 151 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHH-HHTTCSCEEECCCGGG-----HHHH-HHHHHC-CCEEEE
T ss_pred cHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHH-HhCCCCEEEEeCCCCC-----hHHH-HHHHhCCCCEEEE
Confidence 37777888888999999999988763 3322 23333 3468888887432211 1133 3445689999988
Q ss_pred cCC
Q psy9352 137 VSH 139 (146)
Q Consensus 137 ~~~ 139 (146)
+..
T Consensus 152 ~~~ 154 (348)
T 3bil_A 152 DRE 154 (348)
T ss_dssp SSC
T ss_pred ccc
Confidence 653
No 236
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=41.75 E-value=91 Score=22.06 Aligned_cols=67 Identities=7% Similarity=-0.070 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCeEEEEE-----C------ChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 68 LADLDQKFRALGSRLYVVQ-----G------KPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~-----g------~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
+.++++.|++.|+.+.... + +.....-+++++.|+..|.+.....+... .=+.+.+.+++.||.+..
T Consensus 53 ~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~-~l~~l~~~a~~~Gv~l~l 130 (264)
T 1yx1_A 53 TEALTAAIQLQGLECVFSSPLELWREDGQLNPELEPTLRRAEACGAGWLKVSLGLLPEQP-DLAALGRRLARHGLQLLV 130 (264)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEECTTSSBCTTHHHHHHHHHHTTCSEEEEEEECCCSSC-CHHHHHHHHTTSSCEEEE
T ss_pred HHHHHHHHHHcCCEEEEecchhhcCCchhHHHHHHHHHHHHHHcCCCEEEEecCCCCcHH-HHHHHHHHHHhcCCEEEE
Confidence 5678888999998865431 1 12233456678889998887543221111 122566667778886643
No 237
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10
Probab=41.60 E-value=96 Score=22.28 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=43.4
Q ss_pred HHHHhcCCeEEEEECChhhHHHHHHHHcCccE-EE-------Ee--eec---ChhHHHHHHHHHHHHHhCCCeEEEecCC
Q psy9352 73 QKFRALGSRLYVVQGKPEEVFPDIFKTWNIKL-LT-------WE--YDI---EPYAKKRDGLVEDMAKEYKVKVEQHVSH 139 (146)
Q Consensus 73 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~-v~-------~~--~~~---~~~~~~rd~~v~~~~~~~~i~~~~~~~~ 139 (146)
++|++.|+.+.+..|.+...+..++++.+.+. ++ .. ... .+...+.-+.+.+.+++.|+.+..+.++
T Consensus 31 ~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 110 (288)
T 1nrw_A 31 RQAQRDGIEVVVSTGRAHFDVMSIFEPLGIKTWVISANGAVIHDPEGRLYHHETIDKKRAYDILSWLESENYYYEVFTGS 110 (288)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHGGGTCCCEEEEGGGTEEECTTCCEEEECCCCHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCcEEEcCCeEEEcCCCcEEEEeeCCHHHHHHHHHHHHHCCcEEEEEeCC
Confidence 34566899999999999888888888776542 21 11 000 0111222235666677889888777655
Q ss_pred eee
Q psy9352 140 TLY 142 (146)
Q Consensus 140 ~L~ 142 (146)
..+
T Consensus 111 ~~~ 113 (288)
T 1nrw_A 111 AIY 113 (288)
T ss_dssp CEE
T ss_pred EEE
Confidence 544
No 238
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=41.44 E-value=30 Score=21.13 Aligned_cols=53 Identities=11% Similarity=0.031 Sum_probs=33.1
Q ss_pred hhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHH-hCCCeEEEe-cCCeeeeCC
Q psy9352 90 EEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK-EYKVKVEQH-VSHTLYNTN 145 (146)
Q Consensus 90 ~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~-~~~i~~~~~-~~~~L~~p~ 145 (146)
-....++.++.++.-...+-+-.+. .++ .+.+... ...|+...+ +++.+..|+
T Consensus 17 C~~aK~~L~~~gi~y~~idi~~d~~--~~~-~~~~~~~G~~tVP~I~i~Dg~~l~~~~ 71 (92)
T 2lqo_A 17 CLRLKTALTANRIAYDEVDIEHNRA--AAE-FVGSVNGGNRTVPTVKFADGSTLTNPS 71 (92)
T ss_dssp HHHHHHHHHHTTCCCEEEETTTCHH--HHH-HHHHHSSSSSCSCEEEETTSCEEESCC
T ss_pred HHHHHHHHHhcCCceEEEEcCCCHH--HHH-HHHHHcCCCCEeCEEEEeCCEEEeCCC
Confidence 3567888899999877665544443 333 3433321 346898888 567777664
No 239
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.23 E-value=61 Score=19.91 Aligned_cols=40 Identities=18% Similarity=0.007 Sum_probs=28.5
Q ss_pred HHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 94 PDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 94 ~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
.+.+++-.+.-|+...+.. ... -+.+...|+..+|+++.+
T Consensus 24 ~kai~~gka~lViiA~D~~-~~~--~~~i~~~c~~~~ip~~~~ 63 (99)
T 3j21_Z 24 IRLAKTGGAKLIIVAKNAP-KEI--KDDIYYYAKLSDIPVYEF 63 (99)
T ss_dssp HHHHHHTCCSEEEEECCCC-HHH--HHHHHHHHHHTTCCEEEE
T ss_pred HHHHHcCCccEEEEeCCCC-HHH--HHHHHHHHHHcCCCEEEe
Confidence 3455666788898888844 322 236888888999998777
No 240
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=41.16 E-value=49 Score=22.34 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHc
Q psy9352 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW 100 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 100 (146)
-+..|.++.+++++.|..++.+.-++.+.+.++++++
T Consensus 49 e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~ 85 (186)
T 1n8j_A 49 ELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSS 85 (186)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHc
Confidence 3567888999998889999888888778888999887
No 241
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=41.04 E-value=1.1e+02 Score=22.66 Aligned_cols=14 Identities=7% Similarity=0.394 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHh
Q psy9352 64 LQQSLADLDQKFRA 77 (146)
Q Consensus 64 l~~sL~~L~~~L~~ 77 (146)
+.+.|.+|.+++++
T Consensus 159 ~~~~L~~Ld~~~~~ 172 (286)
T 3gi1_A 159 FKKEAEQLTEEYTQ 172 (286)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34456666665543
No 242
>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A
Probab=41.00 E-value=85 Score=22.21 Aligned_cols=64 Identities=8% Similarity=0.074 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
.++.++=+.|++ |+++.|..+.+........+..++ +.|++..+.+.. +-.-..+..++++.|+
T Consensus 124 ~g~~~~L~~L~~-~~~l~i~Tn~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~-KP~p~~~~~~~~~~~~ 191 (260)
T 2gfh_A 124 DDVKAMLTELRK-EVRLLLLTNGDRQTQREKIEACACQSYFDAIVIGGEQKEE-KPAPSIFYHCCDLLGV 191 (260)
T ss_dssp HHHHHHHHHHHT-TSEEEEEECSCHHHHHHHHHHHTCGGGCSEEEEGGGSSSC-TTCHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHc-CCcEEEEECcChHHHHHHHHhcCHHhhhheEEecCCCCCC-CCCHHHHHHHHHHcCC
Confidence 355556666766 699999998887776777777664 566766554311 1111245555555555
No 243
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=40.87 E-value=73 Score=21.98 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCC-eEEEEECChhhHHHHHHHHcCcc
Q psy9352 65 QQSLADLDQKFRALGS-RLYVVQGKPEEVFPDIFKTWNIK 103 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~ 103 (146)
+.++.++..+++++|. .++.+.-+......+++++.++.
T Consensus 68 l~~f~~~~~ef~~~g~d~VigIS~D~~~~~~~f~~~~~l~ 107 (176)
T 4f82_A 68 VPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTA 107 (176)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 3567788888889999 89999988888899999998886
No 244
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=40.74 E-value=31 Score=26.45 Aligned_cols=40 Identities=13% Similarity=-0.008 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEE
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLL 105 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v 105 (146)
+.+..+++-|+..|++.++..|+..+.+..|+++--+..|
T Consensus 127 ~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~~g~~~~I 166 (346)
T 2izo_A 127 IMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAA 166 (346)
T ss_dssp HHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHhCCCeEEE
Confidence 4677788889999999999999999999988875333333
No 245
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=40.38 E-value=97 Score=22.00 Aligned_cols=73 Identities=11% Similarity=0.084 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEE---CChhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQ---GKPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~---g~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
.|..+-+..+++.++++|..+.++. +++.. .+..+. ..+++.|++... ... ... ...+.+.+.||++..
T Consensus 17 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiii~~~-~~~--~~~-~~~~~~~~~~ipvV~ 91 (303)
T 3d02_A 17 PWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLI-ARKVDAITIVPN-DAN--VLE-PVFKKARDAGIVVLT 91 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHH-HTTCSEEEECCS-CHH--HHH-HHHHHHHHTTCEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHH-HcCCCEEEEecC-ChH--HHH-HHHHHHHHCCCeEEE
Confidence 4777778888899999999987643 34433 344444 358898887432 211 111 223445568999998
Q ss_pred ecCC
Q psy9352 136 HVSH 139 (146)
Q Consensus 136 ~~~~ 139 (146)
++..
T Consensus 92 ~~~~ 95 (303)
T 3d02_A 92 NESP 95 (303)
T ss_dssp ESCT
T ss_pred EecC
Confidence 8754
No 246
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=40.38 E-value=63 Score=19.87 Aligned_cols=40 Identities=15% Similarity=-0.022 Sum_probs=24.5
Q ss_pred HHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 94 PDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 94 ~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
.+.+++-.+.-|+...+. |... -+.+...|++.+|+++.+
T Consensus 25 ~kai~~gka~lViiA~D~-~~~~--~~~l~~~c~~~~vp~~~~ 64 (101)
T 1w41_A 25 IQYAKMGGAKLIIVARNA-RPDI--KEDIEYYARLSGIPVYEF 64 (101)
T ss_dssp HHHHHHTCCSEEEEETTS-CHHH--HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHcCCCcEEEEeCCC-CHHH--HHHHHHHHHhcCCCEEEe
Confidence 344455567777777763 3322 225777777778887765
No 247
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=40.17 E-value=63 Score=24.04 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=42.1
Q ss_pred eEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 81 RLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 81 ~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
+..+..|- ..+..+++.-.+.-|+...|.+|.+.-. .+-.+|++.||++..+.+
T Consensus 125 p~~lk~Gv--neVTklVE~kKAqLVVIA~DVdPiElV~--fLPaLC~k~gVPY~iVk~ 178 (258)
T 3iz5_H 125 PIVVKYGL--NHVTYLIEQSKAQLVVIAHDVDPIELVV--WLPALCRKMEVPYCIVKG 178 (258)
T ss_dssp CCCEEESH--HHHHHHHHTTCEEEEEEESCCSSTHHHH--HHHHHHTTTTCCEEEESC
T ss_pred Cceeeccc--HHHHHHHHcCcceEEEEeCCCChHHHHh--HHHHHHHhcCCCeEEECC
Confidence 45666663 3456788888899999999999886654 688889999999988765
No 248
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=40.16 E-value=44 Score=23.77 Aligned_cols=67 Identities=12% Similarity=0.025 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhcCCe-EEEEEC--ChhhH--HHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 62 RFLQQSLADLDQKFRALGSR-LYVVQG--KPEEV--FPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~-L~v~~g--~~~~~--l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
.|+.+-+..+++.+++.|.. +.+... ++... +.+.+...+++.|++.. . .+. .+.+.||++..+
T Consensus 23 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~--~--------~~~-~~~~~~iPvV~~ 91 (277)
T 3hs3_A 23 RFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA--F--------TIP-PNFHLNTPLVMY 91 (277)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC--C--------CCC-TTCCCSSCEEEE
T ss_pred hhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc--h--------HHH-HHHhCCCCEEEE
Confidence 47778888899999999999 877753 33222 22334456899888754 1 122 235678999988
Q ss_pred cCC
Q psy9352 137 VSH 139 (146)
Q Consensus 137 ~~~ 139 (146)
+..
T Consensus 92 ~~~ 94 (277)
T 3hs3_A 92 DSA 94 (277)
T ss_dssp SCC
T ss_pred ccc
Confidence 754
No 249
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=39.60 E-value=96 Score=22.69 Aligned_cols=70 Identities=14% Similarity=0.277 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCeEEEEE-CChhhHHHHHHHHc--CccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 67 SLADLDQKFRALGSRLYVVQ-GKPEEVFPDIFKTW--NIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~-g~~~~~l~~l~~~~--~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
+++-|+..+++.|-++.|-. |....++..++.+. ++..|+++..+.+.+ -.+.+.+.+++.|++++.+..
T Consensus 42 a~~~l~~a~~~~g~~i~Va~SGkDS~vLL~Ll~~~~~~i~vv~iDtg~~~~e--t~~~v~~~~~~~gi~l~v~~~ 114 (275)
T 2goy_A 42 PQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPE--TYRFIDQVREHYGIAIDVLSP 114 (275)
T ss_dssp HHHHHHHHHHHHSTTEEEECCSSTTHHHHHHHHHHCTTCCEEEECCSCCCHH--HHHHHHHHHHHHTCCCEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeecHHHHHHHHHHHHhCCCceEEEEeCCCCCHH--HHHHHHHHHHHHCCeEEEEeC
Confidence 44455555555555554433 66556777777764 567788876665433 334677788888988876643
No 250
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=39.51 E-value=97 Score=21.75 Aligned_cols=58 Identities=19% Similarity=0.044 Sum_probs=32.3
Q ss_pred CCeEEEEECChhhHHHHHHH----HcCccEEEE-eeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 79 GSRLYVVQGKPEEVFPDIFK----TWNIKLLTW-EYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 79 g~~L~v~~g~~~~~l~~l~~----~~~~~~v~~-~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
|..++|--..=......+++ .-+|+.|++ ..+|......-. .-.+.+++.||+|....
T Consensus 84 g~TlYvTlePC~~Ca~aIi~al~~~~gI~rVV~~~~d~~~~~p~~~-~g~~~L~~aGI~V~~~~ 146 (190)
T 2nyt_A 84 NVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQ-AALKKLKEAGCKLRIMK 146 (190)
T ss_pred CeEEEEEcChHHHHHHHHHHhhhhcCCccEEEEEeecCCcCChHHH-HHHHHHHHCCCEEEEec
Confidence 77787754432223333333 238998887 555532111112 34456788999998654
No 251
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=39.47 E-value=1.1e+02 Score=22.33 Aligned_cols=70 Identities=7% Similarity=0.053 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--Chhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG--KPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
.|+.+-+..+++.+++.|..+.+... ++.. .+..+ ...+++.|++...... +..+.. +.+.|+++..+
T Consensus 76 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiI~~~~~~~-----~~~~~~-l~~~~iPvV~~ 148 (332)
T 2o20_A 76 TYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETF-LSKQVDGIVYMGSSLD-----EKIRTS-LKNSRTPVVLV 148 (332)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHH-HHTTCSEEEECSSCCC-----HHHHHH-HHHHCCCEEEE
T ss_pred cHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHH-HhCCCCEEEEeCCCCC-----HHHHHH-HHhCCCCEEEE
Confidence 37778888889999999999988763 3322 23333 3468998887532111 112333 34578999888
Q ss_pred cC
Q psy9352 137 VS 138 (146)
Q Consensus 137 ~~ 138 (146)
+.
T Consensus 149 ~~ 150 (332)
T 2o20_A 149 GT 150 (332)
T ss_dssp SC
T ss_pred cc
Confidence 65
No 252
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A
Probab=39.39 E-value=16 Score=25.40 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc------cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI------KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~------~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
++.++-+.|++.|+++.+..+.+...+....+. ++ +.++...+... .+-.-..+..++++.|+
T Consensus 113 ~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~-~l~~~f~~d~i~~~~~~~~-~kp~~~~~~~~~~~lg~ 181 (243)
T 3qxg_A 113 GAWELLQKVKSEGLTPMVVTGSGQLSLLERLEH-NFPGMFHKELMVTAFDVKY-GKPNPEPYLMALKKGGL 181 (243)
T ss_dssp THHHHHHHHHHTTCEEEEECCCCCHHHHTTHHH-HSTTTCCGGGEECTTTCSS-CTTSSHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHH-hHHHhcCcceEEeHHhCCC-CCCChHHHHHHHHHcCC
Confidence 345666778888999999987765555444444 43 44555443321 11111256666666665
No 253
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus subtilis} PDB: 3d3f_A*
Probab=39.27 E-value=1.1e+02 Score=22.41 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=10.8
Q ss_pred HHHHHHHhCCCeEEEe
Q psy9352 121 LVEDMAKEYKVKVEQH 136 (146)
Q Consensus 121 ~v~~~~~~~~i~~~~~ 136 (146)
.+...|++.||.+..+
T Consensus 174 ~l~~~~~~~gi~v~a~ 189 (276)
T 3f7j_A 174 ELRDYCKGQGIQLEAW 189 (276)
T ss_dssp HHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHCCCEEEEe
Confidence 4666677777777665
No 254
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=39.27 E-value=84 Score=21.85 Aligned_cols=43 Identities=9% Similarity=0.213 Sum_probs=35.8
Q ss_pred EECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHH
Q psy9352 85 VQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127 (146)
Q Consensus 85 ~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~ 127 (146)
+.|+..+.++......|+++..++.+.+....++|.....++.
T Consensus 88 ilGdi~~tL~~~~~r~g~~a~LaHaD~G~g~~~~d~a~a~~ls 130 (174)
T 3iht_A 88 ILGDIRETLPATLERFGATASLVHADLGGHNREKNDRFARLIS 130 (174)
T ss_dssp EESCHHHHHHHHHHHHCSCEEEEEECCCCSCHHHHHHHHHHHH
T ss_pred ecccHHHHHHHHHHhcCCceEEEEeecCCCCcchhHHHHHhhh
Confidence 3488899999888889999999999998877888877776664
No 255
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=39.03 E-value=1.1e+02 Score=22.17 Aligned_cols=66 Identities=11% Similarity=0.054 Sum_probs=39.0
Q ss_pred HHHhcCCeEEEEECChhhHHHHHHHHcCcc---------------EEEEeeecChhHHHHHHHHHHHHHh--CCCeEEEe
Q psy9352 74 KFRALGSRLYVVQGKPEEVFPDIFKTWNIK---------------LLTWEYDIEPYAKKRDGLVEDMAKE--YKVKVEQH 136 (146)
Q Consensus 74 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~---------------~v~~~~~~~~~~~~rd~~v~~~~~~--~~i~~~~~ 136 (146)
+|.+.|+.+.+..|.+...+..++...+.. .+.......+ +.-+.+.+.+++ .++.+..+
T Consensus 66 ~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~i~~~~l~~---~~~~~i~~~~~~~~~~~~~~~~ 142 (304)
T 3l7y_A 66 QLQERDIRFVVASSNPYRQLREHFPDCHEQLTFVGENGANIISKNQSLIEVFQQR---EDIASIIYFIEEKYPQAVIALS 142 (304)
T ss_dssp HHHHTTCEEEEECSSCHHHHHTTCTTTGGGSEEEEGGGTEEEETTEEEEECCCCH---HHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHHHhCCCCcEEeCCCcEEEECCEEEEEecCCH---HHHHHHHHHHHHhcCCeEEEEE
Confidence 345579999999999988887777665541 2222222222 222245555655 67777766
Q ss_pred cCCeee
Q psy9352 137 VSHTLY 142 (146)
Q Consensus 137 ~~~~L~ 142 (146)
.....+
T Consensus 143 ~~~~~~ 148 (304)
T 3l7y_A 143 GEKKGY 148 (304)
T ss_dssp ESSCEE
T ss_pred cCCCEe
Confidence 555443
No 256
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=38.86 E-value=98 Score=23.15 Aligned_cols=65 Identities=9% Similarity=-0.091 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCeEEEEECChhhHHHHHHHHc-CccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEEVFPDIFKTW-NIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~-~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
++++-|+.-.++.+++...+..-.+-..+.. .=.+|++++..+....+-+ .+.+++++.|+.+..
T Consensus 85 d~~ell~~~~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~-~l~~~a~~~g~~l~v 150 (393)
T 4fb5_A 85 DWRALIADPEVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAE-RMLATAERSGKVAAL 150 (393)
T ss_dssp CHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHH-HHHHHHHHSSSCEEE
T ss_pred CHHHHhcCCCCcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHH-HhhhhHHhcCCcccc
Confidence 4556666677888887765543222221111 2368999998876655544 677777888876643
No 257
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2
Probab=38.54 E-value=9.2 Score=25.77 Aligned_cols=65 Identities=9% Similarity=0.037 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHH-cC----ccEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT-WN----IKLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~-~~----~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
.++.++=+.|++.|+++.++.+.+...+..+.+. .+ ++.++...+.+..--.. ..+..++++.|+
T Consensus 94 ~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~Kp~~-~~~~~~~~~~~~ 163 (206)
T 2b0c_A 94 PEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEA-RIYQHVLQAEGF 163 (206)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHHHHCSEEEEHHHHTCCTTCH-HHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHCCCeEEEEECCChHHHHHHHHhccChhhheeeEEEecccCCCCCCH-HHHHHHHHHcCC
Confidence 4666677778888999999987654432221111 11 46677765443211111 145555665565
No 258
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=38.52 E-value=49 Score=21.33 Aligned_cols=42 Identities=17% Similarity=0.059 Sum_probs=23.6
Q ss_pred HHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 95 DIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 95 ~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
+.+++-.+.-|+...+.+|.+... .+...|++.+|++..+.+
T Consensus 38 kal~~gka~lViiA~D~~~~~~~~--~l~~lc~~~~Vp~~~v~s 79 (124)
T 2fc3_A 38 KAVERGLAKLVVIAEDVDPPEIVM--HLPLLCDEKKIPYVYVPS 79 (124)
T ss_dssp HHHHTTCCSEEEEETTCSSGGGTT--THHHHHHHTTCCEEEESC
T ss_pred HHHHcCCceEEEEcCCCChHHHHH--HHHHHHHHcCCCEEEECC
Confidence 334445566666666666553222 456666666776655443
No 259
>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}
Probab=38.44 E-value=29 Score=23.68 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
.++.++-+.|++.|+++.+..+.+. ...+.+..++ +.++...+... .+-.-..+..+++..|+
T Consensus 95 ~~~~~~l~~l~~~g~~~~i~t~~~~--~~~~l~~~gl~~~f~~i~~~~~~~~-~Kp~~~~~~~~~~~lgi 161 (233)
T 3nas_A 95 PGIGRLLCQLKNENIKIGLASSSRN--APKILRRLAIIDDFHAIVDPTTLAK-GKPDPDIFLTAAAMLDV 161 (233)
T ss_dssp TTHHHHHHHHHHTTCEEEECCSCTT--HHHHHHHTTCTTTCSEECCC----------CCHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHCCCcEEEEcCchh--HHHHHHHcCcHhhcCEEeeHhhCCC-CCCChHHHHHHHHHcCC
Confidence 4556677778888999999887644 4566666664 45555443321 11111255566666665
No 260
>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A
Probab=38.20 E-value=75 Score=21.03 Aligned_cols=38 Identities=5% Similarity=0.119 Sum_probs=26.3
Q ss_pred HHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeec
Q psy9352 73 QKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDI 111 (146)
Q Consensus 73 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~ 111 (146)
+.|++. +++.+..+.+.+.+..+.+..++ +.++...+.
T Consensus 83 ~~l~~~-~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 124 (201)
T 2w43_A 83 KEISEI-AEVYALSNGSINEVKQHLERNGLLRYFKGIFSAESV 124 (201)
T ss_dssp HHHHHH-SEEEEEESSCHHHHHHHHHHTTCGGGCSEEEEGGGG
T ss_pred HHHHhC-CeEEEEeCcCHHHHHHHHHHCCcHHhCcEEEehhhc
Confidence 445566 88988888877777777777764 566665443
No 261
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=38.18 E-value=1.2e+02 Score=22.39 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=39.6
Q ss_pred EEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChhh--HHHHHHHHcCc
Q psy9352 42 PLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEE--VFPDIFKTWNI 102 (146)
Q Consensus 42 ~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~--~l~~l~~~~~~ 102 (146)
.+|+.|.... ++|......+.+-+.+.-+.|.+.|.+.+++.-+... .+..+-+..++
T Consensus 50 ~iy~~D~~~~---Pyg~~s~~~i~~~~~~~~~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~i 109 (286)
T 2jfq_A 50 IYYLGDIGRC---PYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSI 109 (286)
T ss_dssp EEEEECTTTC---CCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHHHHHHHHHCSS
T ss_pred EEEeccCCCC---CcCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHhCCC
Confidence 5688887543 3455555667777777778888899999999766654 46666555543
No 262
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=38.10 E-value=74 Score=19.98 Aligned_cols=40 Identities=28% Similarity=0.164 Sum_probs=27.0
Q ss_pred HHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 94 PDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 94 ~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
.+.+++-.+.-|+...+. |.... ..+...|+..+|+++.|
T Consensus 30 ~kai~~gka~lViiA~D~-~~~~~--~~l~~~c~~~~Vp~~~~ 69 (110)
T 3cpq_A 30 IKFVKHGEGKLVVLAGNI-PKDLE--EDVKYYAKLSNIPVYQH 69 (110)
T ss_dssp HHHHHTTCCSEEEECTTC-BHHHH--HHHHHHHHHTTCCEEEC
T ss_pred HHHHHcCCceEEEEeCCC-CHHHH--HHHHHHHHHcCCCEEEE
Confidence 344455677888887777 33332 25777888888888776
No 263
>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*
Probab=37.94 E-value=61 Score=22.98 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhcCC--eEEEEECChhhHHHHHHHHcCc----cEEEEeeecCh---hHHHHHHHHHHHHHhCCCe
Q psy9352 65 QQSLADLDQKFRALGS--RLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEP---YAKKRDGLVEDMAKEYKVK 132 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~--~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~---~~~~rd~~v~~~~~~~~i~ 132 (146)
..++.++=+.|++.|. ++.+..+.+...+..+.+..++ +.+++..+... ..+-.-..+..++++.|+.
T Consensus 144 ~p~~~~~L~~L~~~g~~~~l~i~Tn~~~~~~~~~l~~~gl~~~fd~v~~~~~~~~~~~~~Kp~~~~~~~~~~~lgi~ 220 (282)
T 3nuq_A 144 DIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIADLFDGLTYCDYSRTDTLVCKPHVKAFEKAMKESGLA 220 (282)
T ss_dssp CHHHHHHHHHHHHSSSCSEEEEECSSCHHHHHHHHHHHTCTTSCSEEECCCCSSCSSCCCTTSHHHHHHHHHHHTCC
T ss_pred ChhHHHHHHHHHhCCCCceEEEEECCChHHHHHHHHhCCcccccceEEEeccCCCcccCCCcCHHHHHHHHHHcCCC
Confidence 3456677778888999 9999998877777777777665 45554433211 1121223566666666653
No 264
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=37.90 E-value=52 Score=21.30 Aligned_cols=43 Identities=12% Similarity=-0.054 Sum_probs=26.5
Q ss_pred HHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 94 PDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 94 ~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
.+.+++-.+.-|+...+.+|.+... .+...|++.||++..+.+
T Consensus 40 ~kai~~gka~lViiA~D~~p~~~~~--~l~~lc~~~~VP~~~v~s 82 (122)
T 3o85_A 40 LKQVNRGKAELVIIAADADPIEIVL--HLPLACEDKGVPYVFIGS 82 (122)
T ss_dssp HHHHHTTCCSEEEEETTCSSGGGGT--THHHHHHTTTCCEEEESC
T ss_pred HHHHHcCCceEEEEeCCCChHHHHH--HHHHHHHHhCCCEEEECC
Confidence 3445555677777777777654322 466667777777665544
No 265
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=37.88 E-value=34 Score=21.73 Aligned_cols=67 Identities=12% Similarity=0.092 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 61 ~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
-.++.+ .+++..+++|+++.+..... ..+.+...+ ++.|.. +|.-+-.-+.+++.+...|+++..-+
T Consensus 19 Tsllv~---km~~~a~~~gi~v~i~a~~~-~~~~~~~~~--~DvvLL----gPQV~y~~~~ik~~~~~~~ipV~vI~ 85 (108)
T 3nbm_A 19 SAQLAN---AINEGANLTEVRVIANSGAY-GAHYDIMGV--YDLIIL----APQVRSYYREMKVDAERLGIQIVATR 85 (108)
T ss_dssp HHHHHH---HHHHHHHHHTCSEEEEEEET-TSCTTTGGG--CSEEEE----CGGGGGGHHHHHHHHTTTTCEEEECC
T ss_pred HHHHHH---HHHHHHHHCCCceEEEEcch-HHHHhhccC--CCEEEE----ChHHHHHHHHHHHHhhhcCCcEEEeC
Confidence 356655 45555667899998864111 112233333 677887 44433334468888877889887643
No 266
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=37.63 E-value=66 Score=21.33 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=22.3
Q ss_pred HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEE
Q psy9352 92 VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVE 134 (146)
Q Consensus 92 ~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~ 134 (146)
.+.++....+.+.||+- +|..-- +.+.+.+++.|++..
T Consensus 103 ~l~~~l~~~~~~~vy~C---GP~~mm--~~v~~~l~~~Gv~~~ 140 (158)
T 3lrx_A 103 KVRELLESEDWDLVFMV---GPVGDQ--KQVFEVVKEYGVPMK 140 (158)
T ss_dssp HHHHHHHHSCCSEEEEE---SCHHHH--HHHHHHHGGGTCCEE
T ss_pred HHHHhhccCCCCEEEEE---CCHHHH--HHHHHHHHHcCCCEE
Confidence 34444444455667763 554333 267788888888743
No 267
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=37.59 E-value=1e+02 Score=21.73 Aligned_cols=72 Identities=7% Similarity=-0.051 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC----Chhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEE
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG----KPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVE 134 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g----~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~ 134 (146)
.|+.+-+..+++.+++.|..+.+... ++.. .+..+. ..+++.|++..... ... ...+. .+.+.||++.
T Consensus 20 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~-~~~--~~~~~-~~~~~~iPvV 94 (289)
T 3brs_A 20 DFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAI-KRKPDVILLAAADY-EKT--YDAAK-EIKDAGIKLI 94 (289)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHH-HTCCSEEEECCSCT-TTT--HHHHT-TTGGGTCEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH-HhCCCEEEEeCCCh-HHh--HHHHH-HHHHCCCcEE
Confidence 46777788888899999999988643 3332 344444 46899888753222 111 11233 3456789998
Q ss_pred EecC
Q psy9352 135 QHVS 138 (146)
Q Consensus 135 ~~~~ 138 (146)
.++.
T Consensus 95 ~~~~ 98 (289)
T 3brs_A 95 VIDS 98 (289)
T ss_dssp EESS
T ss_pred EECC
Confidence 8865
No 268
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=37.50 E-value=62 Score=21.59 Aligned_cols=38 Identities=13% Similarity=0.022 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCCe-EEEEECChhhHHHHHHHHcCc
Q psy9352 65 QQSLADLDQKFRALGSR-LYVVQGKPEEVFPDIFKTWNI 102 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~~ 102 (146)
+..|.++.+++++.|+. ++.+.-+..+...+++++.++
T Consensus 64 ~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~ 102 (171)
T 2pwj_A 64 VPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQA 102 (171)
T ss_dssp HHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCC
Confidence 45678888889999999 988887766778899999886
No 269
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=37.28 E-value=1.9e+02 Score=25.52 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCcc
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIK 103 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 103 (146)
..+.-+.|++.|+.+.++.|+.......++++.|+.
T Consensus 604 ~~~aI~~l~~aGI~v~miTGD~~~tA~~ia~~lgi~ 639 (1028)
T 2zxe_A 604 VPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII 639 (1028)
T ss_dssp HHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHcCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 344445677789999999999998888999998875
No 270
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=37.20 E-value=62 Score=20.58 Aligned_cols=49 Identities=2% Similarity=0.018 Sum_probs=27.9
Q ss_pred hhHHHHHHHHcCcc---EEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCee
Q psy9352 90 EEVFPDIFKTWNIK---LLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTL 141 (146)
Q Consensus 90 ~~~l~~l~~~~~~~---~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L 141 (146)
.....++.++.++. -...+-+.. ...++ .+.+......++...++|..+
T Consensus 34 C~~ak~lL~~~gv~~~~~~~~dv~~~--~~~~~-~l~~~sg~~tvP~vfI~g~~i 85 (121)
T 3gx8_A 34 SRATIGLLGNQGVDPAKFAAYNVLED--PELRE-GIKEFSEWPTIPQLYVNKEFI 85 (121)
T ss_dssp HHHHHHHHHHHTBCGGGEEEEECTTC--HHHHH-HHHHHHTCCSSCEEEETTEEE
T ss_pred HHHHHHHHHHcCCCcceEEEEEecCC--HHHHH-HHHHHhCCCCCCeEEECCEEE
Confidence 35667888888887 334433322 22223 454444456688887777653
No 271
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=37.17 E-value=51 Score=24.82 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=36.9
Q ss_pred HHHHH-HHHHHHHHHh--cCCeEEEEEC-ChhhHHHHHHHHc---CccEEEEeeec
Q psy9352 63 FLQQS-LADLDQKFRA--LGSRLYVVQG-KPEEVFPDIFKTW---NIKLLTWEYDI 111 (146)
Q Consensus 63 Fl~~s-L~~L~~~L~~--~g~~L~v~~g-~~~~~l~~l~~~~---~~~~v~~~~~~ 111 (146)
-|.+. +..+++-|+. .|++.+...| +..+++..|+++. |...++++.|.
T Consensus 98 ~L~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~~G~~v~IvS~Dk 153 (290)
T 1exn_A 98 ALDEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDG 153 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGGGSSCEEEECSCG
T ss_pred hHHHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 34445 7778888888 9999998888 8999999998864 55555665554
No 272
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A
Probab=37.11 E-value=56 Score=23.38 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHH
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~ 99 (146)
.++.++=+.|++.|+++.|....+......+.+.
T Consensus 133 ~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~ 166 (261)
T 1yns_A 133 ADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGH 166 (261)
T ss_dssp TTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHT
T ss_pred cCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHh
Confidence 4455666677788999999887776665665553
No 273
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=36.97 E-value=65 Score=22.05 Aligned_cols=43 Identities=12% Similarity=0.286 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCe--EEEEECChhhHHHHHHHH---cCccEEEEeee
Q psy9352 68 LADLDQKFRALGSR--LYVVQGKPEEVFPDIFKT---WNIKLLTWEYD 110 (146)
Q Consensus 68 L~~L~~~L~~~g~~--L~v~~g~~~~~l~~l~~~---~~~~~v~~~~~ 110 (146)
+...++.+++.|.. +.++.|+..+.++.+... ..++.|+++..
T Consensus 102 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~ 149 (225)
T 3tr6_A 102 TALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD 149 (225)
T ss_dssp HHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC
T ss_pred HHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC
Confidence 44555666666654 888899998887776533 45788887554
No 274
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=36.80 E-value=88 Score=20.93 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECC--------hhhHHHHHH-HHcCcc
Q psy9352 64 LQQSLADLDQKFRALGSRLYVVQGK--------PEEVFPDIF-KTWNIK 103 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~~L~v~~g~--------~~~~l~~l~-~~~~~~ 103 (146)
.+..|.++.+++++.|+.++.+.-+ ..+.+.+++ ++++++
T Consensus 66 ~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 114 (190)
T 2vup_A 66 GYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAE 114 (190)
T ss_dssp HHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCC
Confidence 5678999999999889999888643 456778888 777665
No 275
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=36.70 E-value=63 Score=22.68 Aligned_cols=71 Identities=6% Similarity=-0.083 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--Ch---hhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG--KP---EEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~---~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
.|+.+-+..+++.+++.|..+.+... ++ .+.+..+. ..+++.|++...... +..+ +.+.+.|+++..+
T Consensus 12 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~-----~~~~-~~~~~~~iPvV~~ 84 (276)
T 2h0a_A 12 EFYRRLVEGIEGVLLEQRYDLALFPILSLARLKRYLENTTL-AYLTDGLILASYDLT-----ERFE-EGRLPTERPVVLV 84 (276)
T ss_dssp HHHHHHHHHHHHHHGGGTCEEEECCCCSCCCCC----------CCCSEEEEESCCCC------------CCSCSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHH-hCCCCEEEEecCCCC-----HHHH-HHHhhcCCCEEEE
Confidence 47778888999999999999887642 22 23444444 457888887432221 1123 3345678999888
Q ss_pred cCC
Q psy9352 137 VSH 139 (146)
Q Consensus 137 ~~~ 139 (146)
+..
T Consensus 85 ~~~ 87 (276)
T 2h0a_A 85 DAQ 87 (276)
T ss_dssp SSC
T ss_pred ecc
Confidence 653
No 276
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=36.55 E-value=1.3e+02 Score=22.21 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhH-----HHHHHHHHH------HHHhCCCeEE
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYA-----KKRDGLVED------MAKEYKVKVE 134 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~-----~~rd~~v~~------~~~~~~i~~~ 134 (146)
+.|.+.-+.|++.||+..++-....+.+ +.+.+.|++.|=... ++|. .++++.+.. .+.+.|+.|.
T Consensus 114 ~~l~~~i~~L~~~GIrVSLFIDpd~~qi-~aA~~~GA~~IELhT--G~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~Vn 190 (243)
T 1m5w_A 114 DKMRDACKRLADAGIQVSLFIDADEEQI-KAAAEVGAPFIEIHT--GCYADAKTDAEQAQELARIAKAATFAASLGLKVN 190 (243)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSCHHHH-HHHHHTTCSEEEEEC--HHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHH-HHHHHhCcCEEEEec--hhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEe
Confidence 4566667777788999988876555554 678889998775522 2221 122223332 3345899888
Q ss_pred EecCCe
Q psy9352 135 QHVSHT 140 (146)
Q Consensus 135 ~~~~~~ 140 (146)
.-+|=+
T Consensus 191 AGHgL~ 196 (243)
T 1m5w_A 191 AGHGLT 196 (243)
T ss_dssp EESSCC
T ss_pred cCCCCC
Confidence 766643
No 277
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=36.53 E-value=1.4e+02 Score=22.61 Aligned_cols=74 Identities=7% Similarity=0.087 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECChh-hHHHHHHHHc------CccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQGKPE-EVFPDIFKTW------NIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~-~~l~~l~~~~------~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
...+++.-|+..+++.+-.++.+.|-.. .++..|+.+. ++..|+++..+.+. +-.+.+.+.+++.|++++.
T Consensus 31 le~~a~~ilr~~~~~~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~~--et~~~v~~~~~~~gi~l~v 108 (325)
T 1zun_A 31 LEAESIHIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQ--EMYRFRDQMVEEMGLDLIT 108 (325)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCH--HHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCCH--HHHHHHHHHHHHcCCCEEE
Confidence 4556888888888877644444555433 4556666654 57788887666543 3344788888889999888
Q ss_pred ecC
Q psy9352 136 HVS 138 (146)
Q Consensus 136 ~~~ 138 (146)
+.-
T Consensus 109 ~~~ 111 (325)
T 1zun_A 109 HIN 111 (325)
T ss_dssp ECC
T ss_pred EeC
Confidence 753
No 278
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=36.52 E-value=1.3e+02 Score=22.44 Aligned_cols=64 Identities=6% Similarity=0.068 Sum_probs=44.5
Q ss_pred EEEEECCCccCCCCCChh-hHHHHHHHHHHHHHHHHhc-CCeEEEEECChhhHHHHHHHHcCccEEEEee
Q psy9352 42 PLYILDPHFRKFMRVGPN-RWRFLQQSLADLDQKFRAL-GSRLYVVQGKPEEVFPDIFKTWNIKLLTWEY 109 (146)
Q Consensus 42 ~vfv~d~~~~~~~~~~~~-r~~Fl~~sL~~L~~~L~~~-g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~ 109 (146)
+++++|+. .. -+|+. -..|....++.+-+.+++. |++++...+.....++.+ .+.|++.+-++.
T Consensus 195 ~i~i~d~~--~~-~lsp~~f~ef~~p~~k~i~~~i~~~~g~~~i~~~~g~~~~l~~l-~~~g~d~~~~d~ 260 (338)
T 2eja_A 195 VVQIFDSW--VN-NLSLEDYGEYVYPYVNYLISELKDFSDTPVIYFFRGSSSFIDLA-VDYRADALSVDW 260 (338)
T ss_dssp EEEEEETT--GG-GSCHHHHHHHTHHHHHHHHHHHHHHCCCCEEEEESSHHHHHHHH-TTSCCSEEECCT
T ss_pred EEEEecCc--cc-cCCHHHHHHHhHHHHHHHHHHHhhcCCCCEEEEcCCcHHHHHHH-HHcCCCEEEeCC
Confidence 57777873 22 24553 2369999999999999887 888877776566666664 557888776643
No 279
>3krb_A Aldose reductase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, oxidoreductase, S genomics; HET: NAP; 1.75A {Giardia lamblia}
Probab=36.52 E-value=1.3e+02 Score=22.51 Aligned_cols=66 Identities=15% Similarity=0.229 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCC-eEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 66 QSLADLDQKFRALGS-RLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
++|.+|.++ |- .-+=+..-..+.+.++.+..++.-++..-++.+...+ ..+...|++.||.+..+.
T Consensus 159 ~al~~l~~~----Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~--~~l~~~c~~~gI~v~ays 225 (334)
T 3krb_A 159 RAMEQLVEE----GLVKHIGVSNYTVPLLADLLNYAKIKPLVNQIEIHPWHPN--DATVKFCLDNGIGVTAYS 225 (334)
T ss_dssp HHHHHHHHH----TSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCC--HHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHc----CCccEEEEecCCHHHHHHHHHhCCCceEEeeeecCccccc--HHHHHHHHHcCCEEEEEe
Confidence 555555543 42 2233445556778888887665444555566665443 468889999999998764
No 280
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=36.50 E-value=1.3e+02 Score=22.51 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhH-----HHHHHHHHH------HHHhCCCeEE
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYA-----KKRDGLVED------MAKEYKVKVE 134 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~-----~~rd~~v~~------~~~~~~i~~~ 134 (146)
+.|.+.-+.|++.||+..++-....+. -+.+.+.|++.|=..- ++|. ..+++.+.+ .+.+.|+.|.
T Consensus 142 ~~L~~~i~~L~~~GIrVSLFIDpd~~q-I~aA~~~GAd~IELhT--G~YA~a~~~~~~~~el~rl~~aA~~A~~lGL~Vn 218 (278)
T 3gk0_A 142 DAVRAACKQLADAGVRVSLFIDPDEAQ-IRAAHETGAPVIELHT--GRYADAHDAAEQQREFERIATGVDAGIALGLKVN 218 (278)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSCHHH-HHHHHHHTCSEEEECC--HHHHTCSSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHhCcCEEEEec--chhhccCCchhHHHHHHHHHHHHHHHHHcCCEEe
Confidence 445666667788899988777544444 3678888998875522 2221 123323332 2446888887
Q ss_pred EecCC
Q psy9352 135 QHVSH 139 (146)
Q Consensus 135 ~~~~~ 139 (146)
.-+|=
T Consensus 219 AGHGL 223 (278)
T 3gk0_A 219 AGHGL 223 (278)
T ss_dssp ECTTC
T ss_pred cCCCC
Confidence 76553
No 281
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=36.23 E-value=89 Score=20.37 Aligned_cols=40 Identities=10% Similarity=0.208 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEC--------ChhhHHHHHH-HHcCcc
Q psy9352 64 LQQSLADLDQKFRALGSRLYVVQG--------KPEEVFPDIF-KTWNIK 103 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~-~~~~~~ 103 (146)
.+..|.++.+++++.|+.++.+.- +..+.+.+++ ++++++
T Consensus 49 ~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~ 97 (171)
T 3cmi_A 49 QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVT 97 (171)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCC
T ss_pred hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCC
Confidence 668899999999998888877752 3455677888 776665
No 282
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=36.12 E-value=50 Score=24.43 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=25.9
Q ss_pred HHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 93 FPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 93 l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
+.+++++.++..||++....+. . -+.+.+.+++.|+++..++
T Consensus 204 l~~~ik~~~v~~if~e~~~~~~--~-~~~l~~~a~~~g~~v~~l~ 245 (282)
T 3mfq_A 204 TVNLIIDHNIKAIFTESTTNPE--R-MKKLQEAVKAKGGQVEVVT 245 (282)
T ss_dssp HHHHHHHHTCCEEECBTTSCTH--H-HHHHHHHHHTTSCCCEEET
T ss_pred HHHHHHHcCCCEEEEeCCCChH--H-HHHHHHHHHhcCCceEEec
Confidence 4445666788888876544432 1 2256666677788777654
No 283
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=36.06 E-value=1.3e+02 Score=22.32 Aligned_cols=41 Identities=10% Similarity=0.072 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEE
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTW 107 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 107 (146)
+.|.+.-+.|++.||+..++-....+.+ +.+.+.|++.|=.
T Consensus 111 ~~L~~~i~~L~~~GIrVSLFIDpd~~qi-~aA~~~GAd~IEL 151 (260)
T 3o6c_A 111 AKLKQSIEKLQNANIEVSLFINPSLEDI-EKSKILKAQFIEL 151 (260)
T ss_dssp TTHHHHHHHHHHTTCEEEEEECSCHHHH-HHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHH-HHHHHhCCCEEEE
Confidence 4566666778889999988776544543 7888899988765
No 284
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=36.03 E-value=95 Score=21.78 Aligned_cols=66 Identities=12% Similarity=0.042 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECC----hhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQGK----PEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g~----~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
|+.+-+..+++.+++.|..+.+...+ ..+.+..+ ...+++.|++. .... +..+.. .||++..++.
T Consensus 19 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiI~~--~~~~----~~~~~~----~~iPvV~~~~ 87 (280)
T 3gyb_A 19 WFIDLIQSLSDVLTPKGYRLSVIDSLTSQAGTDPITSA-LSMRPDGIIIA--QDIP----DFTVPD----SLPPFVIAGT 87 (280)
T ss_dssp GGHHHHHHHHHHHGGGTCEEEEECSSSSCSSSCHHHHH-HTTCCSEEEEE--SCC----------------CCCEEEESC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHH-HhCCCCEEEec--CCCC----hhhHhh----cCCCEEEECC
Confidence 56667788889999999999988654 12344444 44689988832 2211 112332 6899998875
Q ss_pred C
Q psy9352 139 H 139 (146)
Q Consensus 139 ~ 139 (146)
.
T Consensus 88 ~ 88 (280)
T 3gyb_A 88 R 88 (280)
T ss_dssp C
T ss_pred C
Confidence 4
No 285
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=36.02 E-value=1.6e+02 Score=23.11 Aligned_cols=77 Identities=14% Similarity=0.036 Sum_probs=48.6
Q ss_pred EEEEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEE-------eee--
Q psy9352 40 LKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTW-------EYD-- 110 (146)
Q Consensus 40 l~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~-------~~~-- 110 (146)
.+-||+.+.+-+ .|+-+.+..+|.+.||+..++..... ..++++-+++.|+. |-+
T Consensus 211 ~~~V~v~EtRP~-------------~qGarltA~eL~~~GIpvtlI~Dsa~---~~~M~~~~Vd~ViVGAD~V~aNG~v~ 274 (383)
T 2a0u_A 211 LERVYACETRPW-------------NQGARLTVYECVQEDIPCTLICDGAA---SSLMLNRKIDAVVVGADRICQNGDTA 274 (383)
T ss_dssp EEEEEEECCTTT-------------THHHHTHHHHHHHTTCCEEEECGGGH---HHHHHHSCCCEEEECCSEECTTCCEE
T ss_pred eEEEEEeCCCCc-------------cchHHHHHHHHHHcCCCEEEEehhHH---HHHhhcCCCCEEEECccEEecCCCEe
Confidence 677888765311 14444567778889999999876554 44556644555543 322
Q ss_pred --cChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 111 --IEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 111 --~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
.+.+ .+.-+++..||+|+..-.
T Consensus 275 NKiGTy------~lAl~Ak~~~vPfyV~ap 298 (383)
T 2a0u_A 275 NKIGTY------NLAVSAKFHGVKLYVAAP 298 (383)
T ss_dssp EETTHH------HHHHHHHHTTCCEEEECC
T ss_pred ecccHH------HHHHHHHHcCCCEEEeCC
Confidence 2433 466667889999998643
No 286
>2ipq_X Hypothetical protein STY4665; structural genomics, unknown function, PSI, protein structur initiative; 2.20A {Salmonella typhi} SCOP: a.4.5.74
Probab=36.00 E-value=12 Score=25.05 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=45.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHhcCCeEEEEECC----hhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 56 VGPNRWRFLQQSLADLDQKFRALGSRLYVVQGK----PEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 56 ~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~----~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
.|..-+.||.++|.+=+-...+.+..++++.|. .+++|.+++++.+...-.. ..+.+.-+.|.+..++.|+
T Consensus 7 ~Ge~Fl~WLk~gi~~~~L~iN~~~A~VH~V~g~vfLvsP~IF~~Y~~e~~~~~~~~-----~~~~~~~~~vQk~FEkL~l 81 (135)
T 2ipq_X 7 LGDLFWSWLRDGLREGDIPVNTADACVHLTCGFVFISVPGVFFLFLKSHSRSCSSG-----LKESGRKEQVQAAFEKMRK 81 (135)
T ss_dssp HHHHHHHHHHHHHHTTCSCBSSTTCSEEEETTEEEEETTHHHHHHHHHC----------------CHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHhhhhcCceeecCCCCeEEEECCEEEEEChHHHHHHHHHcCcccccc-----ccchhHHHHHHHHHHHhcc
Confidence 366778899999988777777888899998875 5589999999975532111 1111222357777776665
Q ss_pred e
Q psy9352 132 K 132 (146)
Q Consensus 132 ~ 132 (146)
.
T Consensus 82 H 82 (135)
T 2ipq_X 82 H 82 (135)
T ss_dssp S
T ss_pred c
Confidence 4
No 287
>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
Probab=35.96 E-value=19 Score=17.78 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=20.2
Q ss_pred HHHHHHhcCCeEEEEECChhhHHHHHHH
Q psy9352 71 LDQKFRALGSRLYVVQGKPEEVFPDIFK 98 (146)
Q Consensus 71 L~~~L~~~g~~L~v~~g~~~~~l~~l~~ 98 (146)
+.+.|+++|-|..++-.++.+....|.+
T Consensus 2 V~~~LR~lgePi~lFGE~~~~Rr~RLr~ 29 (31)
T 1mzw_B 2 VKASLRALGEPITLFGEGPAERRERLRN 29 (31)
T ss_dssp HHHHHHHTTCCSEETTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCeeecCCChHHHHHHHHH
Confidence 4678888999988776666666655543
No 288
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=35.92 E-value=1.3e+02 Score=21.99 Aligned_cols=69 Identities=10% Similarity=-0.099 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHH--cCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKT--WNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~--~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
.+.+++.+++.|+.+..........+.+..+. -+++.||...+.... .....+.......++++..+++
T Consensus 158 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~d~~~~--~~~~~i~~~~~~~~iPv~~~~~ 228 (302)
T 3lkv_A 158 MELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNTVA--SAIEGMIVAANQAKTPVFGAAT 228 (302)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHTTCSEEEECSCHHHH--HTHHHHHHHHHHTTCCEEESSH
T ss_pred HHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccCCeeEEEEeCCcchh--hHHHHHHHHHhhcCCceeeccc
Confidence 45566777788888877764444433443332 357888886655433 2233566677778888877654
No 289
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A {Bacillus subtilis} PDB: 3b3d_A
Probab=35.69 E-value=1.2e+02 Score=22.57 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=10.8
Q ss_pred HHHHHHHhCCCeEEEe
Q psy9352 121 LVEDMAKEYKVKVEQH 136 (146)
Q Consensus 121 ~v~~~~~~~~i~~~~~ 136 (146)
.+...|++.||.+..+
T Consensus 208 ~l~~~~~~~gi~v~a~ 223 (310)
T 3b3e_A 208 ELRDYCKGQGIQLEAW 223 (310)
T ss_dssp HHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHcCCEEEEe
Confidence 4666677777777665
No 290
>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc, PSI-biology, structural genomics; 1.96A {Sinorhizobium meliloti}
Probab=35.62 E-value=1.3e+02 Score=22.25 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 89 PEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 89 ~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
..+.+.++.+..++.-.+..-+|.+...+ ..+...|++.||.+..+
T Consensus 161 ~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~--~~l~~~~~~~gi~v~a~ 206 (298)
T 3up8_A 161 NTTQMEEAARLSDAPIATNQVEYHPYLDQ--TKVLQTARRLGMSLTSY 206 (298)
T ss_dssp CHHHHHHHHHHCSSCEEEEEEECBTTBCC--HHHHHHHHHHTCEEEEE
T ss_pred CHHHHHHHHHhCCCCceEEEEeccccccc--HHHHHHHHHCCCEEEEE
Confidence 34455555555544434444455554332 35777777788877765
No 291
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=35.59 E-value=1.3e+02 Score=21.93 Aligned_cols=71 Identities=10% Similarity=0.022 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECC-hhhHHHHHHH---HcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQGK-PEEVFPDIFK---TWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g~-~~~~l~~l~~---~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
|+.+-+..+++.+++.|..+.+...+ ..+.-.++++ ..+++.|++....... ..+. .+.+.|+++..++.
T Consensus 74 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-----~~~~-~l~~~~iPvV~~~~ 147 (332)
T 2hsg_A 74 FYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-----EHVE-ELKKSPVPVVLAAS 147 (332)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSSCCH-----HHHH-HHTTSSSCEEEESC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCH-----HHHH-HHHhCCCCEEEEcc
Confidence 66677788888899999999887643 2222222333 3578888874322111 1233 34568999998865
Q ss_pred C
Q psy9352 139 H 139 (146)
Q Consensus 139 ~ 139 (146)
.
T Consensus 148 ~ 148 (332)
T 2hsg_A 148 I 148 (332)
T ss_dssp C
T ss_pred c
Confidence 3
No 292
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=35.57 E-value=1.2e+02 Score=23.49 Aligned_cols=118 Identities=16% Similarity=0.117 Sum_probs=64.0
Q ss_pred eEEEEecCCCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCCCC-CChhhHHHHHHHHHHHHHHHHhc-CCeEEE
Q psy9352 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMR-VGPNRWRFLQQSLADLDQKFRAL-GSRLYV 84 (146)
Q Consensus 7 ~~l~Wfr~DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~~~-~~~~r~~Fl~~sL~~L~~~L~~~-g~~L~v 84 (146)
.-|+|.= .- -+|+.|....++... +++........+.... .... -..+.+|.+.+-+. +-+...
T Consensus 230 ~RI~~~G--~~-~~~~~l~~~le~~Ga------~VV~~~~~~g~r~~~~~v~~~-----~dpl~~lA~~yl~~~~c~~~~ 295 (385)
T 3o3m_B 230 KKVLLTG--IL-ADSKDILDILEDNNI------SVVADDLAQETRQFRTDVPAG-----DDALERLARQWSNIEGCSLAY 295 (385)
T ss_dssp EEEEEEE--SC-CCCHHHHHHHHHTTE------EEEEEEETTTGGGTSSCCCCC-----SCHHHHHHHHHHHCCSCTTSC
T ss_pred ceEEEEC--CC-CCcHHHHHHHHHCCC------EEEEECccccccccccCCCCC-----ccHHHHHHHHHhcCCCCcccc
Confidence 4456654 22 468899999886433 4444334333222111 1000 01345666665432 221110
Q ss_pred E-ECChhhHHHHHHHHcCccEEEEeeec--ChhHHHHHHHHHHHHHhCCCeEEEecCC
Q psy9352 85 V-QGKPEEVFPDIFKTWNIKLLTWEYDI--EPYAKKRDGLVEDMAKEYKVKVEQHVSH 139 (146)
Q Consensus 85 ~-~g~~~~~l~~l~~~~~~~~v~~~~~~--~~~~~~rd~~v~~~~~~~~i~~~~~~~~ 139 (146)
- ...-.+.+.+++++++++.|+..... .++..... .+++.+++.||++-.++++
T Consensus 296 ~p~~~R~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~~~-~~~~~~~~~giP~l~ie~D 352 (385)
T 3o3m_B 296 DPKKKRGSLIVDEVKKKDIDGVIFCMMKFCDPEEYDYP-LVRKDIEDSGIPTLYVEID 352 (385)
T ss_dssp CTTCTHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHH-HHHHHHHTTTCCEEEEEEC
T ss_pred CcHHHHHHHHHHHHHhCCCCEEEEeccCCCCccHhhHH-HHHHHHHHCCCCEEEEEec
Confidence 0 01345677888899999888764432 34444444 6777788889998887654
No 293
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=35.46 E-value=1.3e+02 Score=21.87 Aligned_cols=71 Identities=11% Similarity=-0.043 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEE---CChhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQ---GKPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~---g~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
|+.+-+..+++.++++|..+.+.. +++.. .+..++ ..+++.|++..... ... . .+.+.+++.||++..+
T Consensus 17 ~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li-~~~vdgiii~~~~~-~~~--~-~~~~~a~~~gipvV~~ 91 (316)
T 1tjy_A 17 FFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFV-NQGYDAIIVSAVSP-DGL--C-PALKRAMQRGVKILTW 91 (316)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHH-HTTCSEEEECCSSS-STT--H-HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCH-HHH--H-HHHHHHHHCcCEEEEe
Confidence 556667777788889999998752 34443 344455 35899888753221 111 1 2233455689999998
Q ss_pred cC
Q psy9352 137 VS 138 (146)
Q Consensus 137 ~~ 138 (146)
+.
T Consensus 92 d~ 93 (316)
T 1tjy_A 92 DS 93 (316)
T ss_dssp SS
T ss_pred cC
Confidence 75
No 294
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=35.45 E-value=1.3e+02 Score=22.60 Aligned_cols=30 Identities=10% Similarity=-0.070 Sum_probs=17.0
Q ss_pred EeeecChhHHHHHH-HHHHHHHhCCCeEEEe
Q psy9352 107 WEYDIEPYAKKRDG-LVEDMAKEYKVKVEQH 136 (146)
Q Consensus 107 ~~~~~~~~~~~rd~-~v~~~~~~~~i~~~~~ 136 (146)
..-+|.+..+..+. .+...|++.||.+..+
T Consensus 192 ~Q~~~~l~~~~~~~~~l~~~~~~~gi~v~a~ 222 (346)
T 3n6q_A 192 HQPSYNLLNRWVDKSGLLDTLQNNGVGCIAF 222 (346)
T ss_dssp EECBCBTTBCHHHHTTHHHHHHHHTCEEEEB
T ss_pred EeccCchhhcCcchhhHHHHHHHcCCeEEEe
Confidence 33444444433333 4667777777777665
No 295
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Probab=35.32 E-value=52 Score=23.29 Aligned_cols=28 Identities=14% Similarity=0.432 Sum_probs=19.1
Q ss_pred HHHHhcCCeEEEEECChhhHHHHHHHHcC
Q psy9352 73 QKFRALGSRLYVVQGKPEEVFPDIFKTWN 101 (146)
Q Consensus 73 ~~L~~~g~~L~v~~g~~~~~l~~l~~~~~ 101 (146)
++|++.|+.+.+..|.+ ..+..+.++.+
T Consensus 30 ~~l~~~G~~~~iaTGR~-~~~~~~~~~l~ 57 (261)
T 2rbk_A 30 EAAHAKGLKIFIATGRP-KAIINNLSELQ 57 (261)
T ss_dssp HHHHHTTCEEEEECSSC-GGGCCSCHHHH
T ss_pred HHHHHCCCEEEEECCCh-HHHHHHHHHhC
Confidence 34556799999999998 65554444443
No 296
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10
Probab=35.30 E-value=40 Score=24.36 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=24.2
Q ss_pred HHhcCCeEEEEECChhhHHHHHHHHcCcc
Q psy9352 75 FRALGSRLYVVQGKPEEVFPDIFKTWNIK 103 (146)
Q Consensus 75 L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 103 (146)
|++.|+.+.+..|.+...+..++++.+.+
T Consensus 38 l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 66 (275)
T 1xvi_A 38 LREANVPVILCSSKTSAEMLYLQKTLGLQ 66 (275)
T ss_dssp HHHTTCCEEEECSSCHHHHHHHHHHTTCT
T ss_pred HHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 44579999999999998888888887664
No 297
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=35.23 E-value=1.5e+02 Score=22.78 Aligned_cols=77 Identities=13% Similarity=0.075 Sum_probs=47.7
Q ss_pred EEEEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHc-------CccEEEEeee--
Q psy9352 40 LKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW-------NIKLLTWEYD-- 110 (146)
Q Consensus 40 l~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~-------~~~~v~~~~~-- 110 (146)
.+-||+.+.+-. .|+-+-...+|.+.||+..++...... .++++- |++.|..|-+
T Consensus 182 ~~~V~v~EtRP~-------------~qG~rlta~eL~~~GI~vtlI~Dsa~~---~~M~~~~Vd~VivGAd~V~aNG~v~ 245 (347)
T 1t9k_A 182 RIRVFADETRPY-------------LQGARLTAWELMKDGIEVYVITDNMAG---WLMKRGLIDAVVVGADRIALNGDTA 245 (347)
T ss_dssp CEEEEEECCTTT-------------THHHHTHHHHHHTTTCEEEEECGGGHH---HHHHTTCCSEEEECCSEEETTSCEE
T ss_pred eEEEEEeCCCCc-------------cccHHHHHHHHHhCCCCEEEEehhHHH---HHhhcCCCCEEEECccEEecCCCEE
Confidence 566777764311 234444667788999999988765543 455553 4445543332
Q ss_pred --cChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 111 --IEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 111 --~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
.+.+ .+.-+++..||+|+..-.
T Consensus 246 NKiGT~------~lAl~Ak~~~vPfyV~ap 269 (347)
T 1t9k_A 246 NKIGTY------SLAVLAKRNNIPFYVAAP 269 (347)
T ss_dssp EETTHH------HHHHHHHHTTCCEEEECC
T ss_pred ecccHH------HHHHHHHHcCCCEEEecc
Confidence 2433 566667889999998743
No 298
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=35.20 E-value=45 Score=21.34 Aligned_cols=41 Identities=15% Similarity=0.019 Sum_probs=22.2
Q ss_pred HHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 95 DIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 95 ~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
+.+++-.+.-|+...+.+|.+... .+...|++.+|++..+.
T Consensus 37 kal~~gka~lViiA~D~~~~~~~~--~l~~lc~~~~Vp~~~~~ 77 (119)
T 1rlg_A 37 KAVERGLAKLVYIAEDVDPPEIVA--HLPLLCEEKNVPYIYVK 77 (119)
T ss_dssp HHHTTTCCSEEEEESCCSCSTTTT--HHHHHHHHHTCCEEEES
T ss_pred HHHHcCCCcEEEEeCCCChHHHHH--HHHHHHHHcCCCEEEeC
Confidence 334444566666666666543222 45556666666655443
No 299
>3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MLY MSE NAD; 1.18A {Mus musculus} SCOP: c.1.7.1
Probab=35.16 E-value=1.2e+02 Score=22.55 Aligned_cols=51 Identities=8% Similarity=0.040 Sum_probs=33.5
Q ss_pred EECChhhHHHHHHHHcCcc--EEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 85 VQGKPEEVFPDIFKTWNIK--LLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 85 ~~g~~~~~l~~l~~~~~~~--~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
+..-..+.+.++.+..++. -++..-++.+...+ ..+...|++.||.+..+.
T Consensus 166 vSn~~~~~l~~~~~~~~~~~~p~~~Q~~~~~~~~~--~~l~~~~~~~gi~v~a~s 218 (324)
T 3ln3_A 166 VSNFNHRQLERILNXPGLXYXPVCNQVECHLYLNQ--RXLLDYCESXDIVLVAYG 218 (324)
T ss_dssp EESCCHHHHHHHHTCTTCCCCCSEEEEECBTTBCC--HHHHHHHHHTTCEEEEES
T ss_pred ecCCcHHHHHHHHHhcCccCCceeeEeeeCcccch--HHHHHHHHHcCCEEEEec
Confidence 3454567788888766654 33444455555433 368889999999988763
No 300
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=35.13 E-value=52 Score=25.39 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHH
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~ 99 (146)
...+++-|+..|++.++..+++.+.+..|+++
T Consensus 130 ~~~i~~~L~~~gIp~i~ap~EADaqiA~La~~ 161 (352)
T 3qe9_Y 130 AHKVIKAARSQGVDCLVAPYEADAQLAYLNKA 161 (352)
T ss_dssp HHHHHHHHHHTTCEEEECSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCcEEECCcchHHHHHHHHHC
Confidence 44566677778888887777777777777775
No 301
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=35.09 E-value=55 Score=20.78 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=38.0
Q ss_pred HHHHhcCCeE--EEEE---CChhhHHHHHHHHcCcc---EEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCeee
Q psy9352 73 QKFRALGSRL--YVVQ---GKPEEVFPDIFKTWNIK---LLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLY 142 (146)
Q Consensus 73 ~~L~~~g~~L--~v~~---g~~~~~l~~l~~~~~~~---~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~ 142 (146)
+.|++++..| .|.- |=...++.++-..+... .|-+.... ...++.....++++.|..+.+.-|++++
T Consensus 8 ~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~---~~d~~e~a~~la~~t~a~vVq~IG~~~V 82 (104)
T 1rq8_A 8 RYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNN---FDDKKELAETLSEATRSELVQVIGSMIV 82 (104)
T ss_dssp HHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCC---HHHHHHHHHHHHHHHTEEEEEEETTEEE
T ss_pred HHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCC---HHHHHHHHHHHHHHhCCEEEEEECCEEE
Confidence 3445454444 2232 44556666666655444 33343322 3345546777777788888888888654
No 302
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=35.03 E-value=54 Score=24.92 Aligned_cols=42 Identities=7% Similarity=-0.122 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEee
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEY 109 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~ 109 (146)
-+..+++-|+..|++.+...|..+..+..+++ .|....+.+.
T Consensus 130 ~~~~~~~lL~~~gi~~i~apgeAEA~lA~la~-~g~~~~I~S~ 171 (336)
T 1rxw_A 130 IVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAA-KGDVEYTGSQ 171 (336)
T ss_dssp HHHHHHHHHHHTTCCEEECSSCHHHHHHHHHH-TTSSSEEECS
T ss_pred HHHHHHHHHHhCCCCEEEcCchHHHHHHHHHH-cCCeeEEEcC
Confidence 46778888999999999999987778888884 3433333433
No 303
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=34.87 E-value=1.5e+02 Score=22.49 Aligned_cols=71 Identities=13% Similarity=0.017 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCeEEEEE---CChhhHHHHHHHHcCc-----cEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 68 LADLDQKFRALGSRLYVVQ---GKPEEVFPDIFKTWNI-----KLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~---g~~~~~l~~l~~~~~~-----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
++.|++.|+++|+.-.+.. .++.+.+..+++.+|. +.|+..-.-.+...++-..+.+.+.+.+..+..+.+
T Consensus 68 l~~l~~~l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~~y~~~i~~~~~~~~nVlil~~ 146 (294)
T 3g40_A 68 LPSISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEEIREIIRKASMYRMGVLLFSK 146 (294)
T ss_dssp HHHHHHHHHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhHHHHHHHHHHHHhCceEEEEec
Confidence 4777889999999876654 6677888899999876 577775555554433333444444455665555543
No 304
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=34.79 E-value=85 Score=22.08 Aligned_cols=45 Identities=16% Similarity=0.028 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEE-------CChh---------hHHHHHHHHcCccEEEEee
Q psy9352 65 QQSLADLDQKFRALGSRLYVVQ-------GKPE---------EVFPDIFKTWNIKLLTWEY 109 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~~L~v~~-------g~~~---------~~l~~l~~~~~~~~v~~~~ 109 (146)
-..+.++++.+++.|+.+.... .++. ...-+++++.|+..|.+..
T Consensus 44 ~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~ 104 (275)
T 3qc0_A 44 AIGLGEAGRIVRANGLKLTGLCRGGFFPAPDASGREKAIDDNRRAVDEAAELGADCLVLVA 104 (275)
T ss_dssp HHCHHHHHHHHHHHTCEESCEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTTCSCEEEEC
T ss_pred ccCHHHHHHHHHHcCCceEEeecCCCcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 4568899999999999875433 1221 1234556778999888764
No 305
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=34.68 E-value=2.4e+02 Score=24.90 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI 102 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 102 (146)
+...+.-++|++.|+.+.+..|+.......++++.|+
T Consensus 607 ~~~~~aI~~l~~aGI~vvmiTGd~~~tA~~ia~~lgi 643 (1034)
T 3ixz_A 607 ATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGI 643 (1034)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 3445556667788999999999999888899998887
No 306
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=34.61 E-value=86 Score=19.73 Aligned_cols=14 Identities=7% Similarity=0.033 Sum_probs=7.1
Q ss_pred HHHHHhCCCeEEEe
Q psy9352 123 EDMAKEYKVKVEQH 136 (146)
Q Consensus 123 ~~~~~~~~i~~~~~ 136 (146)
....+..|.++..+
T Consensus 94 srevrrrgfevrtv 107 (134)
T 2l69_A 94 SREVRRRGFEVRTV 107 (134)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHhcCceEEEe
Confidence 33344566666554
No 307
>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A
Probab=34.54 E-value=1e+02 Score=20.62 Aligned_cols=63 Identities=13% Similarity=0.033 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCC-C
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYK-V 131 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~-i 131 (146)
++.++-+.|++. .++.+..+.+.+.+....+..++ +.++...+.+.. +..-..+..+++..| +
T Consensus 107 ~~~~~l~~l~~~-~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~-kp~~~~~~~~~~~~g~~ 174 (238)
T 3ed5_A 107 GAFDLISNLQQQ-FDLYIVTNGVSHTQYKRLRDSGLFPFFKDIFVSEDTGFQ-KPMKEYFNYVFERIPQF 174 (238)
T ss_dssp THHHHHHHHHTT-SEEEEEECSCHHHHHHHHHHTTCGGGCSEEEEGGGTTSC-TTCHHHHHHHHHTSTTC
T ss_pred cHHHHHHHHHhc-CeEEEEeCCCHHHHHHHHHHcChHhhhheEEEecccCCC-CCChHHHHHHHHHcCCC
Confidence 344555667777 88999988877777777777664 566665544321 211236777777777 6
No 308
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=34.20 E-value=13 Score=28.54 Aligned_cols=31 Identities=6% Similarity=-0.039 Sum_probs=15.4
Q ss_pred EEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 106 TWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 106 ~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
+..-+|.+..+..+..+...|++.||.+..+
T Consensus 212 ~~Q~~~~~~~~~~e~~ll~~~~~~gI~v~a~ 242 (353)
T 3erp_A 212 IHQPKYSLFERWVEDGLLALLQEKGVGSIAF 242 (353)
T ss_dssp EEECBCBTTBCGGGGTHHHHHHHHTCEEEEB
T ss_pred EeeccccccccchhhHHHHHHHHcCCeEEEe
Confidence 3333444433322234666666667766654
No 309
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=34.00 E-value=52 Score=20.19 Aligned_cols=49 Identities=6% Similarity=0.010 Sum_probs=29.7
Q ss_pred hhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCee
Q psy9352 90 EEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTL 141 (146)
Q Consensus 90 ~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L 141 (146)
-....++.++.++.-...+-+..+ ..++ .+.+.....+++....++..+
T Consensus 33 C~~ak~~L~~~~i~~~~vdi~~~~--~~~~-~l~~~~g~~~vP~ifi~g~~i 81 (109)
T 1wik_A 33 SKQILEILNSTGVEYETFDILEDE--EVRQ-GLKTFSNWPTYPQLYVRGDLV 81 (109)
T ss_dssp HHHHHHHHHHTCSCEEEEESSSCH--HHHH-HHHHHHSCCSSCEEECSSSEE
T ss_pred HHHHHHHHHHcCCCeEEEECCCCH--HHHH-HHHHHhCCCCCCEEEECCEEE
Confidence 456778888888886666544332 2222 444444446788877777654
No 310
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=33.73 E-value=90 Score=22.86 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=21.5
Q ss_pred HHhcCCeEEEEECChhhHHHHHH--HHcC
Q psy9352 75 FRALGSRLYVVQGKPEEVFPDIF--KTWN 101 (146)
Q Consensus 75 L~~~g~~L~v~~g~~~~~l~~l~--~~~~ 101 (146)
|++.|+.+.+..|.+...+..++ ++.+
T Consensus 57 l~~~Gi~v~iaTGR~~~~~~~~~~~~~l~ 85 (301)
T 2b30_A 57 AIEKGYMVSICTGRSKVGILSAFGEENLK 85 (301)
T ss_dssp HHHHTCEEEEECSSCHHHHHHHHCHHHHH
T ss_pred HHHCCCEEEEEcCCCHHHHHHHhhHHhhc
Confidence 45569999999999888777777 6655
No 311
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=33.39 E-value=1.4e+02 Score=21.79 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=39.7
Q ss_pred EEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHh-cCCeEEEEECChhh--HHHHHHHHcCc
Q psy9352 42 PLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRA-LGSRLYVVQGKPEE--VFPDIFKTWNI 102 (146)
Q Consensus 42 ~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~-~g~~L~v~~g~~~~--~l~~l~~~~~~ 102 (146)
.+|+-|.... ++|..-...+.+-+.+.-+.|.+ .|.+++|+--+... .+..+-+.+++
T Consensus 31 ~iy~~D~~~~---PyG~~s~~~i~~~~~~~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~i 91 (272)
T 1zuw_A 31 IIYVGDTKRC---PYGPRPEEEVLQYTWELTNYLLENHHIKMLVIACNTATAIALDDIQRSVGI 91 (272)
T ss_dssp EEEEECGGGC---CCSSSCHHHHHHHHHHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSS
T ss_pred EEEeccCCCC---CCCCCCHHHHHHHHHHHHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCC
Confidence 5688887543 45555556666766777777778 89999999866655 46666555544
No 312
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=33.38 E-value=33 Score=26.14 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEE--------CChhhHHHHHHHHcCccEEEEeeecCh
Q psy9352 65 QQSLADLDQKFRALGSRLYVVQ--------GKPEEVFPDIFKTWNIKLLTWEYDIEP 113 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~~L~v~~--------g~~~~~l~~l~~~~~~~~v~~~~~~~~ 113 (146)
+-++.+=.+-|+++|++..+.. -+|.+-+.++..+.+++.|++-.++..
T Consensus 78 Lt~~~eK~~ll~~lGVD~v~~~~F~~~~a~ls~e~Fv~~ll~~l~~~~ivvG~DfrF 134 (308)
T 3op1_A 78 ILNPAERERKLKREGVEELYLLDFSSQFASLTAQEFFATYIKAMNAKIIVAGFDYTF 134 (308)
T ss_dssp SSCHHHHHHHHHHHTCCEEEEECCCHHHHTCCHHHHHHHHHHHHTEEEEEEETTCCB
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCCHHHHcCCHHHHHHHHHHHcCCCEEEECcCCCC
Confidence 4455665666778899877653 456666666778899999999888753
No 313
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=33.31 E-value=1.3e+02 Score=22.20 Aligned_cols=69 Identities=9% Similarity=-0.047 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECC--h---hhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQGK--P---EEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~--~---~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
.|+.+-+..+++.++ |..+.+...+ . ...+.+.+...+++.|++...... + ...+.+.+.|+++..+
T Consensus 86 ~~~~~~~~gi~~~a~--g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~-----~-~~~~~l~~~~iPvV~i 157 (366)
T 3h5t_A 86 MASVDFLAGVAQAAG--DTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSVAKG-----D-PHIDAIRARGLPAVIA 157 (366)
T ss_dssp HHHHHHHHHHHHHSS--SCEEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEESCCTT-----C-HHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHHh--hCCEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEecCCCC-----h-HHHHHHHHCCCCEEEE
Confidence 467777777888777 8888777633 1 223445555678888887532111 1 1223345578999988
Q ss_pred cC
Q psy9352 137 VS 138 (146)
Q Consensus 137 ~~ 138 (146)
+.
T Consensus 158 ~~ 159 (366)
T 3h5t_A 158 DQ 159 (366)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 314
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=33.29 E-value=65 Score=23.86 Aligned_cols=40 Identities=13% Similarity=0.166 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCeEEEEECC-hhhHHHHHHHHcCccEEEE
Q psy9352 68 LADLDQKFRALGSRLYVVQGK-PEEVFPDIFKTWNIKLLTW 107 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~-~~~~l~~l~~~~~~~~v~~ 107 (146)
|.+|.+.+++.+++.++.+.. +......++++.|+..+..
T Consensus 217 l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~l 257 (286)
T 3gi1_A 217 LKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKTL 257 (286)
T ss_dssp HHHHHHHHHHTTCCEEEECTTSCTHHHHHHHHTTTCEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCeEEEe
Confidence 566667777777777766633 3345566667777766654
No 315
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=33.15 E-value=1.2e+02 Score=21.15 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChhhH---HHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG--KPEEV---FPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~~---l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
.|+.+-+..+++.+++.|..+.+... ++... +..+ ...+++.|+..... .... ...+ +.+.+.||++..+
T Consensus 14 ~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l-~~~~vdgiIi~~~~-~~~~--~~~~-~~~~~~~iPvV~i 88 (271)
T 2dri_A 14 PFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDL-TVRGTKILLINPTD-SDAV--GNAV-KMANQANIPVITL 88 (271)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHH-TTTTEEEEEECCSS-TTTT--HHHH-HHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHH-HHcCCCEEEEeCCC-hHHH--HHHH-HHHHHCCCcEEEe
Confidence 47778888899999999999988763 33322 3333 34578888874322 1111 1123 3345679999988
Q ss_pred cC
Q psy9352 137 VS 138 (146)
Q Consensus 137 ~~ 138 (146)
+.
T Consensus 89 ~~ 90 (271)
T 2dri_A 89 DR 90 (271)
T ss_dssp SS
T ss_pred cC
Confidence 65
No 316
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=33.09 E-value=1.3e+02 Score=21.40 Aligned_cols=44 Identities=5% Similarity=0.009 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEEC---------Chh---------hHHHHHHHHcCccEEEEee
Q psy9352 66 QSLADLDQKFRALGSRLYVVQG---------KPE---------EVFPDIFKTWNIKLLTWEY 109 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g---------~~~---------~~l~~l~~~~~~~~v~~~~ 109 (146)
+.+.++++.+++.|+.+..+.. ++. ...-+++++.|+..|.+..
T Consensus 64 ~~~~~~~~~l~~~gl~v~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lGa~~v~~~~ 125 (287)
T 3kws_A 64 GRVNEIKQALNGRNIKVSAICAGFKGFILSTDPAIRKECMDTMKEIIAAAGELGSTGVIIVP 125 (287)
T ss_dssp GGHHHHHHHHTTSSCEECEEECCCCSCTTBSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 4578899999999999865432 111 1234556778999998753
No 317
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=33.06 E-value=94 Score=19.67 Aligned_cols=44 Identities=7% Similarity=0.076 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC-------ChhhHHHHHHHHcCccEE
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG-------KPEEVFPDIFKTWNIKLL 105 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g-------~~~~~l~~l~~~~~~~~v 105 (146)
..++..|.++.+++...|+.++.+.- +..+.+.+++++++++--
T Consensus 47 ~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (160)
T 3lor_A 47 NHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFP 97 (160)
T ss_dssp HTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSC
T ss_pred hhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCc
Confidence 33567788888888888888877763 566778899988877643
No 318
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=32.96 E-value=74 Score=24.89 Aligned_cols=64 Identities=9% Similarity=0.031 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHc-------CccEEEEeeec----ChhHHHHHHHHHHHHHhCCCeEE
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW-------NIKLLTWEYDI----EPYAKKRDGLVEDMAKEYKVKVE 134 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~-------~~~~v~~~~~~----~~~~~~rd~~v~~~~~~~~i~~~ 134 (146)
|+.+-...+|.+.||+..++..... ..++++- |++.|..|-+. +.+ .+.-+++..||+|+
T Consensus 220 qG~rltA~eL~~~GIpvtlI~Dsa~---~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy------~lAl~Ak~~~vPfy 290 (374)
T 2yvk_A 220 QGSRLTAWELMQGGIDVTLITDSMA---AHTMKEKQISAVIVGADRIAKNGDTANKIGTY------GLAILANAFDIPFF 290 (374)
T ss_dssp HHHHTHHHHHHTTTCEEEEECGGGH---HHHHHHTTCCEEEECCSEEETTCCEEEETTHH------HHHHHHHHTTCCEE
T ss_pred ccHHHHHHHHHHcCCCEEEEehhHH---HHHhhhcCCCEEEECccEEecCCCEEecccHH------HHHHHHHHcCCCEE
Confidence 3444466778899999999876554 3455553 45555444332 333 46666788999999
Q ss_pred EecC
Q psy9352 135 QHVS 138 (146)
Q Consensus 135 ~~~~ 138 (146)
..-.
T Consensus 291 V~ap 294 (374)
T 2yvk_A 291 VAAP 294 (374)
T ss_dssp EECC
T ss_pred Eecc
Confidence 8643
No 319
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=32.86 E-value=1.3e+02 Score=22.58 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=8.2
Q ss_pred HHHHHHHcCccEEEE
Q psy9352 93 FPDIFKTWNIKLLTW 107 (146)
Q Consensus 93 l~~l~~~~~~~~v~~ 107 (146)
+..|++.+|.+.+..
T Consensus 200 f~Yfa~~yGl~~~~~ 214 (312)
T 2o1e_A 200 FGYLAKEYGLKQVPI 214 (312)
T ss_dssp THHHHHHTTCEEEEC
T ss_pred hHHHHHHCCCeEEEe
Confidence 455566666655443
No 320
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=32.85 E-value=1.3e+02 Score=21.29 Aligned_cols=72 Identities=8% Similarity=0.104 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--Chhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG--KPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
.|+.+-+..+++.+++.|..+.+... ++.. .+..+. ..+++.|++....... . .+.+.+.+.||++..+
T Consensus 33 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~~~----~-~~~~~~~~~~iPvV~~ 106 (293)
T 2iks_A 33 TSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLL-QRQVDAIIVSTSLPPE----H-PFYQRWANDPFPIVAL 106 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCSSCTT----C-HHHHTTTTSSSCEEEE
T ss_pred cHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCCCc----H-HHHHHHHhCCCCEEEE
Confidence 37777888888999999999988764 3332 233333 4688988875322111 1 1223345678999988
Q ss_pred cCC
Q psy9352 137 VSH 139 (146)
Q Consensus 137 ~~~ 139 (146)
+..
T Consensus 107 ~~~ 109 (293)
T 2iks_A 107 DRA 109 (293)
T ss_dssp ESC
T ss_pred CCc
Confidence 653
No 321
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=32.84 E-value=1.6e+02 Score=22.20 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhc-------CCeEEEEECChhhHHHHHHHHcCccEEEEee---ecChhHHHHHHHHHHHHHhCCCeE
Q psy9352 64 LQQSLADLDQKFRAL-------GSRLYVVQGKPEEVFPDIFKTWNIKLLTWEY---DIEPYAKKRDGLVEDMAKEYKVKV 133 (146)
Q Consensus 64 l~~sL~~L~~~L~~~-------g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~---~~~~~~~~rd~~v~~~~~~~~i~~ 133 (146)
+.+-|.+|.+++++. +..+++.+. .+..|++.+|.+.+.... +-+|-..+ -..+.+.+++.+|++
T Consensus 182 ~~~~L~~Ld~~~~~~l~~~~~~~r~~v~~H~----af~Yfa~~yGL~~~~~~~~~~~~eps~~~-l~~l~~~ik~~~v~~ 256 (321)
T 1xvl_A 182 YSEQLKAIDRQLGADLEQVPANQRFLVSCEG----AFSYLARDYGMEEIYMWPINAEQQFTPKQ-VQTVIEEVKTNNVPT 256 (321)
T ss_dssp HHHHHHHHHHHHHHHHTTSCGGGCEEEEEES----TTHHHHHHTTCEEEEEESSSSSCSCCHHH-HHHHHHHHHTTTCSE
T ss_pred HHHHHHHHHHHHHHHHhhCcccCCEEEEECc----hHHHHHHHCCCeEEEeeccCCCCCCCHHH-HHHHHHHHHHcCCcE
Confidence 334566666654431 334544432 345555666665544321 11221122 224555555555555
Q ss_pred EEec
Q psy9352 134 EQHV 137 (146)
Q Consensus 134 ~~~~ 137 (146)
..++
T Consensus 257 If~e 260 (321)
T 1xvl_A 257 IFCE 260 (321)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5443
No 322
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=32.74 E-value=66 Score=20.12 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=32.6
Q ss_pred CChhhHHHHHHHHcCc---cEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCeee
Q psy9352 87 GKPEEVFPDIFKTWNI---KLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHTLY 142 (146)
Q Consensus 87 g~~~~~l~~l~~~~~~---~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~ 142 (146)
|=...++.++-..+.. -.|-+.... ...++.....+++..|..+.++-|++++
T Consensus 28 GlT~~vi~ei~~aL~~~ELIKVkvl~~~---~~~~~e~a~~la~~t~a~~Vq~IG~~~v 83 (98)
T 1jo0_A 28 GLTEGVLAEIENALNHHELIKVKVAGAD---RETKQLIINAIVRETKAAQVQTIGHILV 83 (98)
T ss_dssp CSCHHHHHHHHHHHHHHSEEEEEETTCC---HHHHHHHHHHHHHHHCCEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHHCCeEEEEEeCCC---HHHHHHHHHHHHHHhCCEEEEEECCEEE
Confidence 3345666666655544 344443322 2345556777777889999999888654
No 323
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=32.41 E-value=1.4e+02 Score=21.82 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=39.8
Q ss_pred EEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChhh--HHHHHHHHcCc
Q psy9352 42 PLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEE--VFPDIFKTWNI 102 (146)
Q Consensus 42 ~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~--~l~~l~~~~~~ 102 (146)
.+|+-|.... ++|......+.+-+.+.-+.|.+.|.+.+++--+... .+..+-+.+++
T Consensus 35 ~iy~~D~~~~---PyG~~s~~~i~~~~~~~~~~L~~~g~d~IViACNTas~~~l~~lr~~~~i 94 (276)
T 2dwu_A 35 ICYIGDNERC---PYGPRSVEEVQSFVFEMVEFLKQFPLKALVVACNTAAAATLAALQEALSI 94 (276)
T ss_dssp EEEEECGGGC---CCTTSCHHHHHHHHHHHHHHHTTSCEEEEEECCHHHHHHHHHHHHHHCSS
T ss_pred EEEccCCCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCC
Confidence 6788887543 4566656667776777777788899999998866553 56666655544
No 324
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=32.35 E-value=1.2e+02 Score=20.69 Aligned_cols=41 Identities=7% Similarity=0.057 Sum_probs=27.0
Q ss_pred HHHHHHHhcCC--eEEEEECChhhHHHHHHHH---cCccEEEEeee
Q psy9352 70 DLDQKFRALGS--RLYVVQGKPEEVFPDIFKT---WNIKLLTWEYD 110 (146)
Q Consensus 70 ~L~~~L~~~g~--~L~v~~g~~~~~l~~l~~~---~~~~~v~~~~~ 110 (146)
..++.+++.|. .+.+..|+..+.++.+..+ ..++.|+++..
T Consensus 109 ~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~ 154 (229)
T 2avd_A 109 LGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD 154 (229)
T ss_dssp HHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC
T ss_pred HHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC
Confidence 33444555554 5788889888877777643 46788888654
No 325
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=32.25 E-value=82 Score=22.18 Aligned_cols=66 Identities=14% Similarity=0.064 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECChh-hHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQGKPE-EVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~-~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
|+.+-+..+++.+++.|..+.+...+.. +...+ .+++.|++...... +..+. .+.+.||++..++.
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~----~~vdgiI~~~~~~~-----~~~~~-~l~~~~iPvV~~~~ 88 (277)
T 3cs3_A 22 FYGELLEGIKKGLALFDYEMIVCSGKKSHLFIPE----KMVDGAIILDWTFP-----TKEIE-KFAERGHSIVVLDR 88 (277)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEEESTTTTTCCCT----TTCSEEEEECTTSC-----HHHHH-HHHHTTCEEEESSS
T ss_pred hHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHhh----ccccEEEEecCCCC-----HHHHH-HHHhcCCCEEEEec
Confidence 6667788888899999999988764321 11111 27888887532111 11333 34568999998865
No 326
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=31.75 E-value=1.1e+02 Score=20.07 Aligned_cols=42 Identities=12% Similarity=0.236 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhcCC------eEEEEECCh--hhHHHHHHHHcCcc
Q psy9352 62 RFLQQSLADLDQKFRALGS------RLYVVQGKP--EEVFPDIFKTWNIK 103 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~------~L~v~~g~~--~~~l~~l~~~~~~~ 103 (146)
.-....|.++.+++.+.|+ .++.+.-+. .+.+.+++++++++
T Consensus 75 ~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~ 124 (183)
T 3lwa_A 75 RSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLD 124 (183)
T ss_dssp HHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 3456779999999999998 877776444 67888998887765
No 327
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=31.67 E-value=1e+02 Score=20.37 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC--------ChhhHHHHHHHHcCcc
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQG--------KPEEVFPDIFKTWNIK 103 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~~~~~~~ 103 (146)
-....|.++.+++.+.|+.++.+.- +..+.+.+++++++++
T Consensus 63 ~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~ 111 (196)
T 2ywi_A 63 HVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYP 111 (196)
T ss_dssp HHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCC
Confidence 4457789999999888999888875 3455667776665543
No 328
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=31.62 E-value=1.2e+02 Score=20.35 Aligned_cols=57 Identities=7% Similarity=-0.042 Sum_probs=38.3
Q ss_pred HHHHhcCCeEEEEE-CChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCC
Q psy9352 73 QKFRALGSRLYVVQ-GKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130 (146)
Q Consensus 73 ~~L~~~g~~L~v~~-g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~ 130 (146)
.-|+..|...+.+- ..|.+.+.+.+.+.+++.|..+...+.+...-. .+.+.+++.|
T Consensus 40 ~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~-~~i~~L~~~g 97 (161)
T 2yxb_A 40 RALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMK-RLMAKLRELG 97 (161)
T ss_dssp HHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHH-HHHHHHHHTT
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHH-HHHHHHHhcC
Confidence 34666787776553 356677888999999999998876665443333 4555566554
No 329
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=31.49 E-value=81 Score=23.44 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=39.7
Q ss_pred eEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 81 RLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 81 ~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
+..+..|.- .....++.-.+.-|+...+.+|.+... .+..+|++.||++..+.+
T Consensus 129 p~~lk~G~k--eV~KaIekgKAkLVVIA~DadP~eivk--~LpaLC~k~gVPy~~V~s 182 (256)
T 3izc_H 129 PYAVKYGLN--HVVALIENKKAKLVLIANDVDPIELVV--FLPALCKKMGVPYAIVKG 182 (256)
T ss_dssp SCCEEESHH--HHHHHHHHTCCSEEEEESCCSSGGGTT--HHHHHHHHHTCCEEEESC
T ss_pred ChhhhccHH--HHHHHHHhCcceEEEEeCCCChHHHHH--HHHHHHHhcCCCEEEECC
Confidence 456667743 334667777899999999998875543 478889999999887665
No 330
>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}
Probab=31.25 E-value=1.3e+02 Score=23.42 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=43.0
Q ss_pred HHHhcCCeEEEEECC---hhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecCCe
Q psy9352 74 KFRALGSRLYVVQGK---PEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVSHT 140 (146)
Q Consensus 74 ~L~~~g~~L~v~~g~---~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~~~ 140 (146)
..++.|+++.+.-|+ |.+.+.+.+...+++.|----.. . .|..+.+.+++.+|.+..+..++
T Consensus 205 ~ar~~Gl~~t~HAGE~~~p~~~i~~al~~lga~RIgHG~~~----~-~d~~L~~~l~~~~I~lEvCP~SN 269 (380)
T 4gxw_A 205 DARAAGFRTTAHAGEFGMPWRNVETAVDLLHVDRVDHGYTI----V-DNPELCARYAERGIVFTVVPTNS 269 (380)
T ss_dssp HHHHTTCEEEEEESCTTCCHHHHHHHHHTSCCSEEEECGGG----G-GCHHHHHHHHHHTCEEEECTTCH
T ss_pred HHHHcCCCeeeeccccCCchHHHHHHHHHcCCcccccceee----c-cChHHHHHHHHhCceeEECCcch
Confidence 356789999998876 44566777777888888652211 1 13356667778899999988765
No 331
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=31.14 E-value=76 Score=21.74 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECCh---------------hhHHHHHHHHcCc--cEEEE
Q psy9352 65 QQSLADLDQKFRALGSRLYVVQGKP---------------EEVFPDIFKTWNI--KLLTW 107 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~~L~v~~g~~---------------~~~l~~l~~~~~~--~~v~~ 107 (146)
..++.++=+.|++.|+++.|..+.+ .+.+..+.++.++ +.++.
T Consensus 52 ~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~f~~~~~ 111 (211)
T 2gmw_A 52 IDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYY 111 (211)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred CcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHHHHHHHHcCCceEEEEE
Confidence 3556666677888899999999887 4667777787776 45554
No 332
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}
Probab=31.08 E-value=1.3e+02 Score=22.64 Aligned_cols=67 Identities=12% Similarity=0.166 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhcC-CeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 65 QQSLADLDQKFRALG-SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g-~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.++|.+|+++ | +.-+=+..-..+.+.++.+..++.-.+..-++.+..++ ..+...|++.||.+..+.
T Consensus 160 ~~aL~~l~~~----Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~--~~l~~~~~~~gI~v~a~s 227 (335)
T 3h7u_A 160 WKAMEALYDS----GKARAIGVSNFSTKKLADLLELARVPPAVNQVECHPSWRQ--TKLQEFCKSKGVHLSAYS 227 (335)
T ss_dssp HHHHHHHHHT----TSBSSEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCC--HHHHHHHHHHTCEEEEES
T ss_pred HHHHHHHHHc----CCccEEEecCCCHHHHHHHHHhCCCCeEEEecccccccCC--HHHHHHHHHCCCEEEEec
Confidence 3455555443 3 22233444456777888877665444444456655443 368888999999988764
No 333
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=31.01 E-value=1.5e+02 Score=21.30 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=40.1
Q ss_pred EEEEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChhh--HHHHHHHHcCc
Q psy9352 40 LKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEE--VFPDIFKTWNI 102 (146)
Q Consensus 40 l~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~--~l~~l~~~~~~ 102 (146)
-..+|+-|.... ++|......+.+.+.+.-+.|.+.|.+.+++.-+... .+.++-+..++
T Consensus 26 ~~~iy~~D~~~~---pyG~~s~~~i~~~~~~~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~i 87 (254)
T 1b73_A 26 VDIVYLGDTARV---PYGIRSKDTIIRYSLECAGFLKDKGVDIIVVACNTASAYALERLKKEINV 87 (254)
T ss_dssp CEEEEEECTTTC---CCTTSCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSS
T ss_pred CcEEEeecCCCC---CCCcCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCC
Confidence 346788887544 3455555667777777777888899999998766553 35555555443
No 334
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=30.76 E-value=67 Score=21.43 Aligned_cols=45 Identities=13% Similarity=0.280 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECC---------------hhhHHHHHHHHcCcc--EEEEe
Q psy9352 64 LQQSLADLDQKFRALGSRLYVVQGK---------------PEEVFPDIFKTWNIK--LLTWE 108 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~~L~v~~g~---------------~~~~l~~l~~~~~~~--~v~~~ 108 (146)
+..++.++=+.|++.|+++.|+.+. +...+..+++..++. .|+++
T Consensus 43 ~~pg~~e~L~~L~~~G~~l~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~v~~s 104 (176)
T 2fpr_A 43 FEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQFDEVLIC 104 (176)
T ss_dssp BCTTHHHHHHHHHHTTEEEEEEEECTTTTBTTBCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCccHHHHHHHHHHCCCEEEEEECCccccccccchHhhhhhHHHHHHHHHHcCCCeeEEEEc
Confidence 3456666777788889999999876 566777888887764 55543
No 335
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=30.75 E-value=67 Score=22.20 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECC
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQGK 88 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g~ 88 (146)
-..+.|.+++++|.+.|+.|.+...+
T Consensus 85 ~Q~~~L~~ik~sL~~~gI~l~~~fs~ 110 (163)
T 4a5z_A 85 QQSRGLQEIEESLRSHGVLLEVQYSS 110 (163)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45688999999999999999887643
No 336
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=30.75 E-value=1e+02 Score=24.03 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECCh---------hh---HHHHHHHHcC--ccEEEEeeecChhHHHHHHHHHHHHHh
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQGKP---------EE---VFPDIFKTWN--IKLLTWEYDIEPYAKKRDGLVEDMAKE 128 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g~~---------~~---~l~~l~~~~~--~~~v~~~~~~~~~~~~rd~~v~~~~~~ 128 (146)
+++.++.++=+.|++.|+.+.|+.+.+ .. .+..+++..+ ++.+++..+.... +-.-..+..++++
T Consensus 87 ~~~pgv~e~L~~L~~~G~~l~IvTN~~gi~~g~~~~~~~~~~~~~~l~~lgl~fd~i~~~~~~~~~-KP~p~~~~~a~~~ 165 (416)
T 3zvl_A 87 ILYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNR-KPVSGMWDHLQEQ 165 (416)
T ss_dssp ESCTTHHHHHHHHHHTTCEEEEEEECHHHHTTSSCHHHHHHHHHHHHHHHTSCCEEEEECSSSTTS-TTSSHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHCCCeEEEEeCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEEECCCCCCC-CCCHHHHHHHHHH
Confidence 356777778888889999999999865 22 2566666666 5677776554311 1111256666666
Q ss_pred CC
Q psy9352 129 YK 130 (146)
Q Consensus 129 ~~ 130 (146)
.|
T Consensus 166 l~ 167 (416)
T 3zvl_A 166 AN 167 (416)
T ss_dssp SS
T ss_pred hC
Confidence 55
No 337
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A
Probab=30.68 E-value=91 Score=20.91 Aligned_cols=63 Identities=11% Similarity=0.105 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
.+.++-+.|++. .++.+..+.+...+..+.+..++ +.++...+.+.. +..-..+..+++..|+
T Consensus 104 ~~~~~l~~l~~~-~~~~i~t~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~-kp~~~~~~~~~~~~~~ 170 (234)
T 3u26_A 104 EVVEVLKSLKGK-YHVGMITDSDTEQAMAFLDALGIKDLFDSITTSEEAGFF-KPHPRIFELALKKAGV 170 (234)
T ss_dssp THHHHHHHHTTT-SEEEEEESSCHHHHHHHHHHTTCGGGCSEEEEHHHHTBC-TTSHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHhC-CcEEEEECCCHHHHHHHHHHcCcHHHcceeEeccccCCC-CcCHHHHHHHHHHcCC
Confidence 345566677777 89999998888777778877764 566665443221 1111246666666666
No 338
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=30.57 E-value=1.8e+02 Score=24.67 Aligned_cols=72 Identities=10% Similarity=0.254 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHc-CccEEEEeeecChhHHHHHHHHHHHHH-hCCCeEEEecC
Q psy9352 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW-NIKLLTWEYDIEPYAKKRDGLVEDMAK-EYKVKVEQHVS 138 (146)
Q Consensus 61 ~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~-~~~~v~~~~~~~~~~~~rd~~v~~~~~-~~~i~~~~~~~ 138 (146)
..|.-+++++|.++|++.|...+ ...+..+.+ .++++. .+++|+.+-+.. ..+ .+.++-+ ..+|++..+-+
T Consensus 12 ~~~~~~~i~~L~~~Le~~g~~V~-~a~s~~Da~-~~i~~~~~i~avIld~d~~--~~~---ll~~Ir~~~~~iPVFl~~~ 84 (715)
T 3n75_A 12 VYFKEEPIRELHRALERLNFQIV-YPNDRDDLL-KLIENNARLCGVIFDWDKY--NLE---LCEEISKMNENLPLYAFAN 84 (715)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEE-CCSSHHHHH-HHHHHCTTEEEEEEEHHHH--HHH---HHHHHHHHCTTCEEEEECC
T ss_pred cccchHHHHHHHHHHHHCCcEEE-EeCCHHHHH-HHHHhCCCceEEEEecccc--HHH---HHHHHHHhCCCCCEEEEec
Confidence 46888999999999999998853 334455554 455544 589999966542 111 2222221 35799888755
Q ss_pred C
Q psy9352 139 H 139 (146)
Q Consensus 139 ~ 139 (146)
.
T Consensus 85 ~ 85 (715)
T 3n75_A 85 T 85 (715)
T ss_dssp T
T ss_pred C
Confidence 4
No 339
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=30.55 E-value=1.7e+02 Score=21.89 Aligned_cols=13 Identities=46% Similarity=0.539 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q psy9352 64 LQQSLADLDQKFR 76 (146)
Q Consensus 64 l~~sL~~L~~~L~ 76 (146)
+.+.|.+|.++++
T Consensus 175 ~~~~L~~Ld~~~~ 187 (313)
T 1toa_A 175 YQQQLDKLDAYVR 187 (313)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3345666655543
No 340
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=30.49 E-value=1.4e+02 Score=20.98 Aligned_cols=66 Identities=8% Similarity=-0.014 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCeEE---EE--ECCh-----h----hHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCC-
Q psy9352 67 SLADLDQKFRALGSRLY---VV--QGKP-----E----EVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKV- 131 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~---v~--~g~~-----~----~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i- 131 (146)
-+.-+.+.|++.|+++. +. .++. . +.+.++.+. +.++|++..+..-. .+.+.+++.|+
T Consensus 140 R~~gf~~~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ai~~~~d~~a~------g~~~al~~~g~~ 212 (288)
T 2qu7_A 140 RKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSK-GIKGIVATNHLLLL------GALQAIKESEKE 212 (288)
T ss_dssp HHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHT-TCCEEEECSHHHHH------HHHHHHHHSSCC
T ss_pred HHHHHHHHHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHHhc-CCCEEEECCcHHHH------HHHHHHHHhCCC
Confidence 34555666777787642 44 4432 1 245566665 89999986543211 34455566554
Q ss_pred -----eEEEecCC
Q psy9352 132 -----KVEQHVSH 139 (146)
Q Consensus 132 -----~~~~~~~~ 139 (146)
.+..|++.
T Consensus 213 vP~di~vvg~d~~ 225 (288)
T 2qu7_A 213 IKKDVIIVGFDDS 225 (288)
T ss_dssp BTTTBEEEEESCC
T ss_pred CCCceEEEEeCCh
Confidence 47777764
No 341
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=30.44 E-value=31 Score=22.28 Aligned_cols=45 Identities=11% Similarity=-0.062 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEE
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTW 107 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~ 107 (146)
-.+..|.++.+++++.|+.++.+.-+..+.+.+++++++++--+.
T Consensus 54 ~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~ 98 (160)
T 1xvw_A 54 GELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLL 98 (160)
T ss_dssp HHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEE
T ss_pred HHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEE
Confidence 345678888888877788888888777788899999888754443
No 342
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=30.43 E-value=1.1e+02 Score=20.40 Aligned_cols=41 Identities=17% Similarity=0.047 Sum_probs=26.5
Q ss_pred HHHHHhcCCeEEEEE-CChh------hHHHHHHHHcCccEEEEeeecC
Q psy9352 72 DQKFRALGSRLYVVQ-GKPE------EVFPDIFKTWNIKLLTWEYDIE 112 (146)
Q Consensus 72 ~~~L~~~g~~L~v~~-g~~~------~~l~~l~~~~~~~~v~~~~~~~ 112 (146)
.+.+++.|+.++.+- |... +.|.+++...+-..+|.-.++.
T Consensus 133 ~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~ 180 (198)
T 1n3y_A 133 IPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFD 180 (198)
T ss_dssp HHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGG
T ss_pred HHHHHHCCCEEEEEEccccccccccHHHHHHHHcCCCcccEEEeCCHH
Confidence 455677899887663 6543 6777777765556666544443
No 343
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=30.31 E-value=73 Score=22.08 Aligned_cols=41 Identities=12% Similarity=0.259 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC--------ChhhHHHHHHHHcCcc
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQG--------KPEEVFPDIFKTWNIK 103 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~~~~~~~ 103 (146)
-.+..|.++.++++..|+.++.+.- +..+.+.+++++++++
T Consensus 76 ~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~ 124 (218)
T 3u5r_E 76 LIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYG 124 (218)
T ss_dssp TTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCC
Confidence 3457789999999988888887765 4556666666665543
No 344
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=30.30 E-value=1.5e+02 Score=21.04 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEE--C--ChhhH---HHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEE
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQ--G--KPEEV---FPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVE 134 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~--g--~~~~~---l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~ 134 (146)
.|+.+-+..+++.+++.|..+.+.. . ++... +..+. ..+++.|++..... ... ...+.+ +.+.||++.
T Consensus 14 ~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vdgiIi~~~~~-~~~--~~~~~~-~~~~~iPvV 88 (288)
T 1gud_A 14 PFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLS-NKNYKGIAFAPLSS-VNL--VMPVAR-AWKKGIYLV 88 (288)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHH-TSSEEEEEECCSSS-STT--HHHHHH-HHHTTCEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCh-HHH--HHHHHH-HHHCCCeEE
Confidence 4777888889999999999998876 3 33322 33333 35788888743221 111 113333 446799999
Q ss_pred EecC
Q psy9352 135 QHVS 138 (146)
Q Consensus 135 ~~~~ 138 (146)
.++.
T Consensus 89 ~~~~ 92 (288)
T 1gud_A 89 NLDE 92 (288)
T ss_dssp EESS
T ss_pred EECC
Confidence 8875
No 345
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=30.23 E-value=1.4e+02 Score=20.90 Aligned_cols=71 Identities=10% Similarity=0.035 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--Chhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHh-CCCeEEE
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG--KPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE-YKVKVEQ 135 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~-~~i~~~~ 135 (146)
.|..+-+..+++.+++.|..+.+... ++.. .+..+. ..+++.|++....... .+.+.+++ .||++..
T Consensus 20 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~~~------~~~~~l~~~~~iPvV~ 92 (289)
T 1dbq_A 20 AYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMA-QKRVDGLLVMCSEYPE------PLLAMLEEYRHIPMVV 92 (289)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEEECSCCCH------HHHHHHHHTTTSCEEE
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHH-hCCCCEEEEEeccCCH------HHHHHHHhccCCCEEE
Confidence 46777788888889999999988763 3332 244443 4688888874322211 12233334 7899988
Q ss_pred ecCC
Q psy9352 136 HVSH 139 (146)
Q Consensus 136 ~~~~ 139 (146)
++..
T Consensus 93 ~~~~ 96 (289)
T 1dbq_A 93 MDWG 96 (289)
T ss_dssp EECS
T ss_pred EccC
Confidence 8653
No 346
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A*
Probab=30.00 E-value=1.6e+02 Score=22.09 Aligned_cols=44 Identities=0% Similarity=0.117 Sum_probs=21.7
Q ss_pred hHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 91 EVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 91 ~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
+.+.++....+++. ..-+|.+..+..+..+...|++.||.+..+
T Consensus 161 ~~l~~~~~~~~~~~--~Q~~~~~~~~~~e~~l~~~~~~~gi~v~a~ 204 (337)
T 3v0s_A 161 DTIRRAHAVHPVTA--LQIEYSLWTRDIEDEIVPLCRQLGIGIVPY 204 (337)
T ss_dssp HHHHHHHHHSCCCE--EEEECBTTBCGGGTTHHHHHHHHTCEEEEE
T ss_pred HHHHHHhccCCceE--EEeeccccccchhHHHHHHHHHcCceEEEe
Confidence 34444444434332 222444443332235666777777777655
No 347
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=29.91 E-value=73 Score=22.57 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCC--eEEEEECChhhHHHHHHHHcCccEEEEeeec
Q psy9352 68 LADLDQKFRALGS--RLYVVQGKPEEVFPDIFKTWNIKLLTWEYDI 111 (146)
Q Consensus 68 L~~L~~~L~~~g~--~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~ 111 (146)
+...++.+++.|. .+.++.|+..+.++.+......+.|+++...
T Consensus 101 ~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~~ 146 (248)
T 3tfw_A 101 AQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDADK 146 (248)
T ss_dssp HHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECSCG
T ss_pred HHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECCch
Confidence 4444555666665 4888899988776655322357888886543
No 348
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=29.86 E-value=1.1e+02 Score=22.62 Aligned_cols=69 Identities=10% Similarity=0.067 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeec-----ChhHHHHHHHHHHHHHhCCCeEEEecCCeee
Q psy9352 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDI-----EPYAKKRDGLVEDMAKEYKVKVEQHVSHTLY 142 (146)
Q Consensus 69 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~-----~~~~~~rd~~v~~~~~~~~i~~~~~~~~~L~ 142 (146)
..+..+|.+.|++..++....... ++. .++.|+...+- +...+.=.-.+..+++..+++|+..-+.+=+
T Consensus 150 ~~~a~~L~~~gI~vtli~dsa~~~---~m~--~vd~vivGAd~i~~nG~v~nkiGt~~iA~~A~~~~vp~~V~a~~~K~ 223 (276)
T 1vb5_A 150 LHLARELEFSGIEFEVITDAQMGL---FCR--EASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYKF 223 (276)
T ss_dssp HHHHHHHHHTTCCEEEECGGGHHH---HHT--TCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGB
T ss_pred HHHHHHHHHCCCCEEEEcHHHHHH---HHc--cCCEEEEcccEEecCCCEeechhHHHHHHHHHHcCCCEEEecccccc
Confidence 455667777899999887554433 444 35544442221 0000111125677788899999987655433
No 349
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A
Probab=29.73 E-value=72 Score=21.15 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCCe
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKVK 132 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~ 132 (146)
..++-+.|++.|+++.+..+. +.+..+.+..++ +.++...+.+.. +..-..+..++++.|++
T Consensus 96 ~~~~l~~l~~~g~~~~i~t~~--~~~~~~l~~~~l~~~f~~~~~~~~~~~~-Kp~~~~~~~~~~~lgi~ 161 (221)
T 2wf7_A 96 ILQLLKDLRSNKIKIALASAS--KNGPFLLERMNLTGYFDAIADPAEVAAS-KPAPDIFIAAAHAVGVA 161 (221)
T ss_dssp HHHHHHHHHHTTCEEEECCCC--TTHHHHHHHTTCGGGCSEECCTTTSSSC-TTSSHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCeEEEEcCc--HHHHHHHHHcChHHHcceEeccccCCCC-CCChHHHHHHHHHcCCC
Confidence 344445667788998888766 333455555553 445444333211 11112556666666663
No 350
>3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic tetrad, hepes, NADP, bIle catabolism, disease mutation, lipid metabolism; HET: NAP EPE; 1.35A {Homo sapiens} PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A* 3cot_A* 3dop_A* 3cmf_A* 3uzx_A* 3uzw_A* 3uzy_A* 3uzz_A*
Probab=29.70 E-value=1.7e+02 Score=21.73 Aligned_cols=66 Identities=9% Similarity=0.132 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhcCC-eEEEEECChhhHHHHHHHHcCcc--EEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 66 QSLADLDQKFRALGS-RLYVVQGKPEEVFPDIFKTWNIK--LLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~--~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
++|.+|++ .|. .-+=+..-..+.+.++.+..++. -++..-+|.+...+ ..+...|++.||.+..+.
T Consensus 152 ~ale~l~~----~Gkir~iGvSn~~~~~l~~~~~~~~~~~~p~~~Q~~~~~~~~~--~~l~~~~~~~gI~v~a~s 220 (326)
T 3buv_A 152 EAMEACKD----AGLVKSLGVSNFNRRQLELILNKPGLKHKPVSNQVECHPYFTQ--PKLLKFCQQHDIVITAYS 220 (326)
T ss_dssp HHHHHHHH----TTSEEEEEEESCCHHHHHHHHTCTTCCSCCCEEEEECBTTBCC--HHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHH----cCCccEEEEeCCCHHHHHHHHHhCCCCCCCeeeeeecccccCc--HHHHHHHHHcCCEEEEec
Confidence 45555544 343 22334455567788888765654 33444456665433 368889999999988764
No 351
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=29.65 E-value=79 Score=23.36 Aligned_cols=43 Identities=7% Similarity=0.147 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCCeEEEEECChh----hHHHHHHHHcCcc-----EEEEee
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPE----EVFPDIFKTWNIK-----LLTWEY 109 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~----~~l~~l~~~~~~~-----~v~~~~ 109 (146)
+..++-+.|+++|+++.++.|.+. +......++.|+. +|++..
T Consensus 105 G~~ell~~L~~~G~ki~ivTgR~~~~~r~~T~~~L~~lGi~~~~~~~Lilr~ 156 (262)
T 3ocu_A 105 GAVEFNNYVNSHNGKVFYVTNRKDSTEKSGTIDDMKRLGFNGVEESAFYLKK 156 (262)
T ss_dssp THHHHHHHHHHTTEEEEEEEEEETTTTHHHHHHHHHHHTCSCCSGGGEEEES
T ss_pred cHHHHHHHHHHCCCeEEEEeCCCccchHHHHHHHHHHcCcCcccccceeccC
Confidence 566788889999999999987765 3555556667775 577653
No 352
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=29.52 E-value=1.5e+02 Score=20.91 Aligned_cols=70 Identities=6% Similarity=-0.046 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--Chhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG--KPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
.|..+-+..+++.+++.|..+.+... ++.. .+..+ ...+++.|++.... .. +..+.. +. .||++..+
T Consensus 21 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiI~~~~~-~~----~~~~~~-l~-~~iPvV~~ 92 (285)
T 3c3k_A 21 PFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLL-SGKMVDGVITMDAL-SE----LPELQN-II-GAFPWVQC 92 (285)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHH-HTTCCSEEEECCCG-GG----HHHHHH-HH-TTSSEEEE
T ss_pred chHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHH-HhCCCCEEEEeCCC-CC----hHHHHH-Hh-cCCCEEEE
Confidence 47777888888999999999988764 3322 23333 34688988874321 11 113333 45 78999988
Q ss_pred cCC
Q psy9352 137 VSH 139 (146)
Q Consensus 137 ~~~ 139 (146)
+..
T Consensus 93 ~~~ 95 (285)
T 3c3k_A 93 AEY 95 (285)
T ss_dssp SSC
T ss_pred ccc
Confidence 653
No 353
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20
Probab=29.49 E-value=53 Score=22.76 Aligned_cols=45 Identities=7% Similarity=0.084 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHc-CccEEEEeee
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW-NIKLLTWEYD 110 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~-~~~~v~~~~~ 110 (146)
.++.++=+.|++.|+++.|+.+.+...+..+.+.. +.+.|+.+..
T Consensus 80 pg~~~~l~~L~~~g~~~~ivS~~~~~~~~~~l~~l~~~~~v~~~~~ 125 (236)
T 2fea_A 80 EGFREFVAFINEHEIPFYVISGGMDFFVYPLLEGIVEKDRIYCNHA 125 (236)
T ss_dssp TTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHHTTTSCGGGEEEEEE
T ss_pred ccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHhcCCCCCeEEeeee
Confidence 35666777788889999999988877777777632 3367777665
No 354
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=29.42 E-value=91 Score=22.99 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhh----HHHHHHHHcCcc-----EEEEee
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEE----VFPDIFKTWNIK-----LLTWEY 109 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~----~l~~l~~~~~~~-----~v~~~~ 109 (146)
+..++-+.|++.|+.+.++.|.+.. ......++.|+. .|++..
T Consensus 105 g~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~~~L~~lGi~~~~~~~Lilr~ 156 (260)
T 3pct_A 105 GAVEFSNYVNANGGTMFFVSNRRDDVEKAGTVDDMKRLGFTGVNDKTLLLKK 156 (260)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEETTTSHHHHHHHHHHHTCCCCSTTTEEEES
T ss_pred cHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCcCccccceeEecC
Confidence 5667788899999999999877653 555666677876 366653
No 355
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=29.41 E-value=36 Score=22.60 Aligned_cols=35 Identities=11% Similarity=0.126 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcC
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWN 101 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~ 101 (146)
+++.+.+-|++.|+++.+++-++...+.+.++..+
T Consensus 3 ~~~~v~~~L~~~~i~~~~~~~~~~~t~~~~a~~lg 37 (152)
T 3op6_A 3 PVKKLKQFLDSHKIKYLSIAHSPAYTAQEIAASAH 37 (152)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTTCCHHHHC----
T ss_pred cHHHHHHHHHHcCCceEEEEcCCCCCHHHHHHHcC
Confidence 46788899999999998776444444556665544
No 356
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=29.25 E-value=1.2e+02 Score=19.57 Aligned_cols=40 Identities=13% Similarity=0.266 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcC--CeEEEEECC----hhhHHHHHHHHcCccE
Q psy9352 65 QQSLADLDQKFRALG--SRLYVVQGK----PEEVFPDIFKTWNIKL 104 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g--~~L~v~~g~----~~~~l~~l~~~~~~~~ 104 (146)
+..|.++.+++++.| +.++.+.-+ ..+.+.+++++++++-
T Consensus 53 ~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~ 98 (174)
T 1xzo_A 53 TAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSF 98 (174)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCG
T ss_pred HHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCC
Confidence 466888888888887 777777654 4577889999988763
No 357
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=28.81 E-value=89 Score=21.64 Aligned_cols=30 Identities=13% Similarity=0.146 Sum_probs=24.1
Q ss_pred HHHhcCCeEEEEECChhhHHHHHHHHcCcc
Q psy9352 74 KFRALGSRLYVVQGKPEEVFPDIFKTWNIK 103 (146)
Q Consensus 74 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 103 (146)
+|++.|+.+.+..|.+...+..+.+..+..
T Consensus 31 ~l~~~G~~v~i~TGR~~~~~~~~~~~l~~~ 60 (231)
T 1wr8_A 31 RAESLGIPIMLVTGNTVQFAEAASILIGTS 60 (231)
T ss_dssp HHHHTTCCEEEECSSCHHHHHHHHHHHTCC
T ss_pred HHHHCCCEEEEEcCCChhHHHHHHHHcCCC
Confidence 455679999999999888888888876654
No 358
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.78 E-value=12 Score=20.83 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCeEEEEECChhhHHHHH
Q psy9352 69 ADLDQKFRALGSRLYVVQGKPEEVFPDI 96 (146)
Q Consensus 69 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l 96 (146)
.+|+..|+++|.++. |+-++.+.+|
T Consensus 14 ~ELQaKLaE~GAPi~---g~REElvdRL 38 (58)
T 2do5_A 14 QELQAKLAEIGAPIQ---GNREELVERL 38 (58)
T ss_dssp HHHHHHHHHHTCCCC---SCHHHHHHHH
T ss_pred HHHHHHHHHhCCccc---ccHHHHHHHH
Confidence 578999999999864 5555544443
No 359
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=28.78 E-value=1.2e+02 Score=19.54 Aligned_cols=47 Identities=2% Similarity=-0.135 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhH
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYA 115 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~ 115 (146)
++.+++.-...++|++++.+.....-..-+.+.|++.. ..+.+.+.+
T Consensus 76 ~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~y-l~KP~~~~~ 122 (134)
T 3to5_A 76 LKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGY-IVKPFTAAT 122 (134)
T ss_dssp HHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEE-EESSCCHHH
T ss_pred HHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEE-EECCCCHHH
Confidence 33444322234677777776554333333445677653 445555543
No 360
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=28.67 E-value=69 Score=25.04 Aligned_cols=42 Identities=12% Similarity=0.144 Sum_probs=28.4
Q ss_pred HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 92 VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 92 ~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.|.+++++.+++.||...|... + .+ .++++++..+|+++.++
T Consensus 270 qIk~~vk~~~lksVFIATDa~~-~--~~-ELk~~L~~~~v~vv~~~ 311 (362)
T 3zy2_A 270 QIVEKVGSIGAKSVFVASDKDH-M--ID-EINEALKPYEIEAHRQE 311 (362)
T ss_dssp HHHHHHHHHTCSEEEEEESSCC-C--HH-HHHHHHGGGTCCEECCS
T ss_pred HHHHHHHhcCCcEEEEecCCHH-H--HH-HHHHHhhccCceEEEeC
Confidence 4555666778999998777654 2 23 67777776778776654
No 361
>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A
Probab=28.66 E-value=30 Score=22.80 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEE
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLL 105 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v 105 (146)
.++.++-+.|++.|+++.+..+.+......+ +..++..+
T Consensus 82 ~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~-~~~~~~~~ 120 (201)
T 4ap9_A 82 PEARELVETLREKGFKVVLISGSFEEVLEPF-KELGDEFM 120 (201)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEETTTSGGG-TTTSSEEE
T ss_pred hhHHHHHHHHHHCCCeEEEEeCCcHHHHHHH-HHcCchhh
Confidence 4566777788889999999998777766677 77777655
No 362
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=28.40 E-value=65 Score=17.64 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHH
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~ 99 (146)
.+.+|+..|+++|.+. .|.-.+.+.+|.+.
T Consensus 9 tV~eLK~~Lk~RGL~~---~G~KadLieRL~~~ 38 (51)
T 1h1j_S 9 TVVQLKDLLTKRNLSV---GGLKNELVQRLIKD 38 (51)
T ss_dssp CHHHHHHHHHHTTCCC---CSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCC---CCcHHHHHHHHHHH
Confidence 3789999999999773 57777777777543
No 363
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Probab=28.39 E-value=1.5e+02 Score=22.72 Aligned_cols=64 Identities=6% Similarity=0.097 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCeEEEEECC------hhhHHHHHHHH--cCccEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 67 SLADLDQKFRALGSRLYVVQGK------PEEVFPDIFKT--WNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~------~~~~l~~l~~~--~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
.+.++=+.|++.|+++.|+.+. ....+..+... .-++.|++..+.+..--..+ .+..++++.|+
T Consensus 104 ~~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~KP~p~-~~~~~~~~lg~ 175 (555)
T 3i28_A 104 PMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMHFDFLIESCQVGMVKPEPQ-IYKFLLDTLKA 175 (555)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHHTTSSEEEEHHHHTCCTTCHH-HHHHHHHHHTC
T ss_pred hHHHHHHHHHHCCCEEEEEeCCCccccchhhHHHHHhhhhhhheeEEEeccccCCCCCCHH-HHHHHHHHcCC
Confidence 3444455788999999999875 33344433222 23677888766532111122 45556666665
No 364
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=28.38 E-value=1.1e+02 Score=20.52 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEE
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLT 106 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~ 106 (146)
+.+.-+.+.+.|..+++..+...+....++.+.|+.+|-
T Consensus 61 l~~~v~kI~~~g~nVVl~~k~I~d~a~~~l~k~gI~~v~ 99 (159)
T 1ass_A 61 FKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVR 99 (159)
T ss_dssp HHHHHHHHHHTTCSEEEESSCBCHHHHHHHHHTTCEEEC
T ss_pred HHHHhhhhhhCCCeEEEECCccCHHHHHHHHHCCCEEEc
Confidence 556666677889999999988888888899998886553
No 365
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=28.38 E-value=97 Score=20.46 Aligned_cols=42 Identities=10% Similarity=0.200 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC--------ChhhHHHHHHHH-cCccE
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQG--------KPEEVFPDIFKT-WNIKL 104 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~~~-~~~~~ 104 (146)
-.+..|.++.++++..|..++-+.- +..+.+.+++++ ++++-
T Consensus 55 ~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~ 105 (180)
T 3kij_A 55 RNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTF 105 (180)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCC
Confidence 3456789999999988888877752 355778899998 87753
No 366
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=28.34 E-value=39 Score=26.15 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=48.5
Q ss_pred cCCCCCcCcHHHHHHHhcCCCCCCCceEEEEEEECCCccCC---CCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Q psy9352 13 RKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKF---MRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGK 88 (146)
Q Consensus 13 r~DLRl~DN~aL~~A~~~~~~~~~~~~l~~vfv~d~~~~~~---~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~ 88 (146)
+|=-|+.-|+++-....+.. .+.+.-+.|+||.+...... .-.|-.| +=.+.|.+.-+++.++|++-+++.|-
T Consensus 13 ~R~RRlR~~~~~R~lv~Et~-L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r--~sid~l~~~~~~~~~lGi~~v~LFgv 88 (337)
T 1w5q_A 13 TRLRRNRRDDFSRRLVRENV-LTVDDLILPVFVLDGVNQRESIPSMPGVER--LSIDQLLIEAEEWVALGIPALALFPV 88 (337)
T ss_dssp CCTTTTTSSHHHHHHHCCCC-CCGGGEEEEEEEESSSSCEEECTTSTTCEE--EEHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCcCCCChHHHHHHhcCC-CCHHHceeeEEEecCCCCccccCCCCCcee--eCHHHHHHHHHHHHHCCCCEEEEecC
Confidence 57788999999877775422 12234488999998754321 1123334 33467777778888999998888766
No 367
>4f40_A Prostaglandin F2-alpha synthase/D-arabinose dehyd; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CIT; 1.60A {Leishmania major} PDB: 4g5d_A*
Probab=28.33 E-value=1.7e+02 Score=21.31 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=17.8
Q ss_pred EeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 107 WEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 107 ~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
..-++.+..++ ..+...|++.||.+..+.
T Consensus 174 ~Q~~~~~~~~~--~~l~~~~~~~gi~v~a~s 202 (288)
T 4f40_A 174 NQVELHPLNNQ--ADLRAFCDAKQIKVEAWS 202 (288)
T ss_dssp EEEECBTTBCC--HHHHHHHHHTTCEEEEES
T ss_pred EeccCccccCC--HHHHHHHHHCCCEEEEec
Confidence 33344444333 357778888888887763
No 368
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=28.30 E-value=1.6e+02 Score=22.93 Aligned_cols=64 Identities=13% Similarity=0.084 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCeEEEEECChhhH---HHHHHHHcCc-----cEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEEV---FPDIFKTWNI-----KLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~~---l~~l~~~~~~-----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
++++-|+.-.++++++...+..- ....++ .|. .+|++++..+....+-+ .+.+++++.|+.+..
T Consensus 80 ~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~-aG~~~~~~khVl~EKP~a~~~~e~~-~l~~~a~~~g~~~~v 151 (438)
T 3btv_A 80 TLESFASSSTIDMIVIAIQVASHYEVVMPLLE-FSKNNPNLKYLFVEWALACSLDQAE-SIYKAAAERGVQTII 151 (438)
T ss_dssp SHHHHHHCSSCSEEEECSCHHHHHHHHHHHHH-HGGGCTTCCEEEEESSCCSSHHHHH-HHHHHHHTTTCEEEE
T ss_pred CHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHH-CCCCcccceeEEecCcccCCHHHHH-HHHHHHHHcCCeEEE
Confidence 45555555678888876554432 222222 232 68999886654333333 677777778876543
No 369
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=28.25 E-value=1.1e+02 Score=20.31 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHc
Q psy9352 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW 100 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 100 (146)
.+..|.++.+++++.|+.++.+.-++.+.+.+++++.
T Consensus 50 ~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~ 86 (187)
T 1we0_A 50 ELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENS 86 (187)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHh
Confidence 3467888888888889999888877777777777665
No 370
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}
Probab=28.25 E-value=68 Score=23.78 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=23.8
Q ss_pred cCCeEEEEECChhhHHHHHHHHcCccE
Q psy9352 78 LGSRLYVVQGKPEEVFPDIFKTWNIKL 104 (146)
Q Consensus 78 ~g~~L~v~~g~~~~~l~~l~~~~~~~~ 104 (146)
.|+++.+..|++.+.+..++++.+++.
T Consensus 69 ~g~~v~~atGr~~~~l~~~~~~~gld~ 95 (335)
T 3n28_A 69 GRYEVALMDGELTSEHETILKALELDY 95 (335)
T ss_dssp TTEEEEEESSCCCHHHHHHHHHHTCEE
T ss_pred ccceEEEecCCchHHHHHHHHHcCCCE
Confidence 389999999999999999999988765
No 371
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}
Probab=28.20 E-value=1.6e+02 Score=22.17 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=33.1
Q ss_pred EECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 85 VQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 85 ~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
+..-..+.+.++.+..++.-++..-++.+..++ ..+...|++.||.+..+.
T Consensus 173 vSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~--~~l~~~~~~~gI~v~a~s 223 (331)
T 3h7r_A 173 VSNFSSKKLTDLLNVARVTPAVNQVECHPVWQQ--QGLHELCKSKGVHLSGYS 223 (331)
T ss_dssp EESCCHHHHHHHHHHCSSCCSEEEEECBTTBCC--HHHHHHHHHHTCEEEEES
T ss_pred ecCCCHHHHHHHHHhcCCCceeEEeecccccCC--HHHHHHHHHCCCEEEEeC
Confidence 344456677788777655444444456555443 368888999999888763
No 372
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=28.19 E-value=39 Score=25.96 Aligned_cols=71 Identities=13% Similarity=0.049 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCeEEEEE--------CChhhHHHH-HHHHcCccEEEEeeecChh--HHHHHHHHHHHHHhCCCeEEE
Q psy9352 67 SLADLDQKFRALGSRLYVVQ--------GKPEEVFPD-IFKTWNIKLLTWEYDIEPY--AKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~--------g~~~~~l~~-l~~~~~~~~v~~~~~~~~~--~~~rd~~v~~~~~~~~i~~~~ 135 (146)
++.+=.+-|+++|++..+.. -+|.+-+.. |++..+++.|++-.++..- ..-.-..+++.+++ |+++..
T Consensus 73 ~~~eR~~ll~~~gVD~v~v~~F~~~~a~ls~e~Fi~~il~~~l~~~~ivvG~Df~FG~~r~g~~~~L~~~~~~-g~~V~~ 151 (338)
T 2x0k_A 73 TLAERFALAESFGIDGVLVIDFTRELSGTSPEKYVEFLLEDTLHASHVVVGANFTFGENAAGTADSLRQICQS-RLTVDV 151 (338)
T ss_dssp CHHHHHHHHHHTTCSEEEEECTTTSSSSCCHHHHHHHCCCCCTCEEEEEEETTCEESGGGCEEHHHHHHHTTT-TSEEEE
T ss_pred CHHHHHHHHHhcCCCEEEEccccHHHHhCCHHHHHHHHHHhhcCCCEEEEeecCCCCCCCCCCHHHHHHHhcC-CeEEEE
Confidence 34444455667899876653 345444545 4566899999998877421 11112256667777 998887
Q ss_pred ecC
Q psy9352 136 HVS 138 (146)
Q Consensus 136 ~~~ 138 (146)
++.
T Consensus 152 v~~ 154 (338)
T 2x0k_A 152 IDL 154 (338)
T ss_dssp ECC
T ss_pred ECc
Confidence 764
No 373
>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A*
Probab=28.16 E-value=1.4e+02 Score=22.24 Aligned_cols=16 Identities=0% Similarity=0.023 Sum_probs=9.9
Q ss_pred HHHHHHHhCCCeEEEe
Q psy9352 121 LVEDMAKEYKVKVEQH 136 (146)
Q Consensus 121 ~v~~~~~~~~i~~~~~ 136 (146)
.+...|++.||.+..+
T Consensus 178 ~l~~~~~~~gi~v~a~ 193 (327)
T 1gve_A 178 ELFPCLRHFGLRFYAF 193 (327)
T ss_dssp THHHHHHHHTCEEEEE
T ss_pred HHHHHHHHcCCeEEEe
Confidence 4556666667666654
No 374
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=28.14 E-value=1.2e+02 Score=19.27 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=33.2
Q ss_pred EEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 84 VVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 84 v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
+..|.- +++ +-+++-.+.-|+...+..+. .-+.+...|...+|+++.+
T Consensus 27 ~~~G~~-~t~-kai~~gkakLVilA~D~~~~---~~~~i~~~c~~~~ipv~~~ 74 (112)
T 3iz5_f 27 YTLGYK-TVL-KTLRSSLGKLIILANNCPPL---RKSEIETYAMLAKISVHHF 74 (112)
T ss_dssp EEESHH-HHH-HHHHTTCCSEEEECSCCCHH---HHHHHHHHHHHTTCCEECC
T ss_pred eeECHH-HHH-HHHHcCCceEEEEeCCCCHH---HHHHHHHHHHHcCCcEEEe
Confidence 445533 333 44455678889998888763 2336888888899999988
No 375
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=28.12 E-value=1.4e+02 Score=21.00 Aligned_cols=31 Identities=13% Similarity=0.419 Sum_probs=22.7
Q ss_pred HHHHhcCCeEEEEE---CChhhHHHHHHHHcCcc
Q psy9352 73 QKFRALGSRLYVVQ---GKPEEVFPDIFKTWNIK 103 (146)
Q Consensus 73 ~~L~~~g~~L~v~~---g~~~~~l~~l~~~~~~~ 103 (146)
+.|++.|+++.+.. |.+...+....++.++.
T Consensus 31 ~~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg~~ 64 (264)
T 3epr_A 31 ERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVE 64 (264)
T ss_dssp HHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCC
T ss_pred HHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 34556799999999 77777777777777663
No 376
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans} PDB: 1ynq_A*
Probab=28.10 E-value=1.8e+02 Score=21.53 Aligned_cols=15 Identities=20% Similarity=0.018 Sum_probs=9.4
Q ss_pred HHHHHHhCCCeEEEe
Q psy9352 122 VEDMAKEYKVKVEQH 136 (146)
Q Consensus 122 v~~~~~~~~i~~~~~ 136 (146)
+...|++.||.+..+
T Consensus 202 l~~~~~~~gI~v~a~ 216 (317)
T 1ynp_A 202 WFPLIQEHGVSVVVR 216 (317)
T ss_dssp GHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCeEEEe
Confidence 556666667666654
No 377
>1qwk_A Aldose reductase, aldo-keto reductase family 1 member C1, XH961; structural genomics, PSI, protein structure initiative; 1.60A {Caenorhabditis elegans} SCOP: c.1.7.1
Probab=28.04 E-value=1.8e+02 Score=21.55 Aligned_cols=50 Identities=8% Similarity=0.026 Sum_probs=30.5
Q ss_pred ECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 86 QGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 86 ~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
..-..+.+.++.+..++.-++..-++.+...+ ..+...|++.||.+..+.
T Consensus 153 Sn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~--~~l~~~~~~~gI~v~a~s 202 (317)
T 1qwk_A 153 SNWNNDQISRALALGLTPVHNSQVELHLYFPQ--HDHVDFCKKHNISVTSYA 202 (317)
T ss_dssp ESCCHHHHHHHHTTCSSCCCEEEEECBTTBCC--HHHHHHHHHTTCEEEEES
T ss_pred cCCCHHHHHHHHHhcCCccceecceeccccCc--HHHHHHHHHcCCEEEEec
Confidence 34445666677665544333344455554433 368888999999888764
No 378
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=27.88 E-value=67 Score=22.75 Aligned_cols=71 Identities=14% Similarity=0.022 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEE--CChh--hHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQ--GKPE--EVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~--g~~~--~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
|+.+-+..+++.+++.|..+.+.. +++. ..+.+.+...+++.|++.... .. +..+.+. .+.||++..++.
T Consensus 26 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~-~~----~~~~~~~-~~~~iPvV~~~~ 99 (289)
T 3g85_A 26 IISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANIS-NY----DLEYLNK-ASLTLPIILFNR 99 (289)
T ss_dssp GHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCC-HH----HHHHHHH-CCCSSCEEEESC
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCC-cc----cHHHHHh-ccCCCCEEEECC
Confidence 666778888889999999987764 2222 122233345688999885321 11 1123332 357899998875
Q ss_pred C
Q psy9352 139 H 139 (146)
Q Consensus 139 ~ 139 (146)
.
T Consensus 100 ~ 100 (289)
T 3g85_A 100 L 100 (289)
T ss_dssp C
T ss_pred C
Confidence 3
No 379
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=27.85 E-value=1.7e+02 Score=22.40 Aligned_cols=63 Identities=10% Similarity=-0.024 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCeEEEEECChhhH---HHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEEV---FPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~~---l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
++++-|+.-.++++++...+..- ..+.+ +.| .+|++++..+....+-+ .+.+++++.|+.+..
T Consensus 87 d~~~ll~~~~vD~V~I~tp~~~H~~~~~~al-~aG-khVl~EKP~a~~~~ea~-~l~~~a~~~g~~~~v 152 (412)
T 4gqa_A 87 DWRELVNDPQVDVVDITSPNHLHYTMAMAAI-AAG-KHVYCEKPLAVNEQQAQ-EMAQAARRAGVKTMV 152 (412)
T ss_dssp SHHHHHHCTTCCEEEECSCGGGHHHHHHHHH-HTT-CEEEEESCSCSSHHHHH-HHHHHHHHHTCCEEE
T ss_pred CHHHHhcCCCCCEEEECCCcHHHHHHHHHHH-HcC-CCeEeecCCcCCHHHHH-HHHHHHHHhCCeeee
Confidence 45555666678888776555432 22222 223 68999888776544444 566677777776643
No 380
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13
Probab=27.85 E-value=74 Score=24.78 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc
Q psy9352 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI 102 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~ 102 (146)
+..++.++=+.|++.|+++.|..+.+...+....+..++
T Consensus 216 l~pGv~elL~~Lk~~Gi~laIvTn~~~~~~~~~L~~lgL 254 (384)
T 1qyi_A 216 PVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGL 254 (384)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTC
T ss_pred cCcCHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcCC
Confidence 356778888888889999999999988777777777775
No 381
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=27.65 E-value=29 Score=26.73 Aligned_cols=64 Identities=14% Similarity=0.072 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCeEEEEECChhhHHHHHHHH--cCccEEEEeee----cChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKT--WNIKLLTWEYD----IEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 69 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~--~~~~~v~~~~~----~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
..+..+|.+.|++..++.......+..-+.. .|++.|..|-+ .+.+ .+.-+++..||+|+..-.
T Consensus 182 rltA~eL~~~GI~vtlI~Dsa~~~~M~~Vd~VivGAd~V~anG~v~NKiGT~------~lAl~Ak~~~vPfyV~a~ 251 (338)
T 3a11_A 182 KITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTA------LIALTAKEHRVWTMIAAE 251 (338)
T ss_dssp HHHHHHHHHTTCCEEEECGGGTTTTGGGCSEEEECCSEECTTSCEEEETTHH------HHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHhCCCCEEEEehHHHHHHHHhCCEEEECccEEecCCCEeecccHH------HHHHHHHHcCCCEEEecc
Confidence 5566788889999999876665443311111 25555544432 2433 566667889999998643
No 382
>1vbj_A Prostaglandin F synthase; TIM barrel, oxidoreductase; HET: NAP CIT; 2.10A {Trypanosoma brucei}
Probab=27.61 E-value=1.7e+02 Score=21.31 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=11.1
Q ss_pred HHHHHHHhCCCeEEEe
Q psy9352 121 LVEDMAKEYKVKVEQH 136 (146)
Q Consensus 121 ~v~~~~~~~~i~~~~~ 136 (146)
.+...|++.||.+..+
T Consensus 177 ~l~~~~~~~gi~v~a~ 192 (281)
T 1vbj_A 177 ALCEYCKSKNIAVTAW 192 (281)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCEEEEe
Confidence 4667777777777655
No 383
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=27.47 E-value=47 Score=23.87 Aligned_cols=66 Identities=9% Similarity=0.090 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEECC--hhh--HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGK--PEE--VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~--~~~--~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
+-+..+++.+++.|..+.+...+ +.. .+.+.+...+++.|++....... ..+.+.+.||++..++.
T Consensus 31 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-------~~~~~~~~~iPvV~~~~ 100 (301)
T 3miz_A 31 DIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRRI-------VDPESGDVSIPTVMINC 100 (301)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE-------CCCCCTTCCCCEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCccH-------HHHHHHhCCCCEEEECC
Confidence 55677788889999999988743 322 22333445688888875432211 12234567899888753
No 384
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=27.39 E-value=1.4e+02 Score=19.81 Aligned_cols=44 Identities=18% Similarity=0.331 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECC--------hhhHHHHHHHHcCccEEEE
Q psy9352 64 LQQSLADLDQKFRALGSRLYVVQGK--------PEEVFPDIFKTWNIKLLTW 107 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~~L~v~~g~--------~~~~l~~l~~~~~~~~v~~ 107 (146)
.+..|.++.+++++.|..++.+.-+ ..+.+.+++++++++--++
T Consensus 67 ~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~ 118 (185)
T 2gs3_A 67 NYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMF 118 (185)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEB
T ss_pred HHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeee
Confidence 3567889999999889888887632 3467888999998874433
No 385
>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6
Probab=27.38 E-value=40 Score=22.56 Aligned_cols=62 Identities=11% Similarity=0.083 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc----cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI----KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~----~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
+.++-+.|++. +++.+..+.+...+..+.+..++ +.++...+.+.. +-.-..+..++++.|+
T Consensus 88 ~~~~l~~l~~~-~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~-KP~~~~~~~~~~~~~~ 153 (209)
T 2hdo_A 88 ITSLFEQLPSE-LRLGIVTSQRRNELESGMRSYPFMMRMAVTISADDTPKR-KPDPLPLLTALEKVNV 153 (209)
T ss_dssp HHHHHHHSCTT-SEEEEECSSCHHHHHHHHTTSGGGGGEEEEECGGGSSCC-TTSSHHHHHHHHHTTC
T ss_pred HHHHHHHHHhc-CcEEEEeCCCHHHHHHHHHHcChHhhccEEEecCcCCCC-CCCcHHHHHHHHHcCC
Confidence 44444556666 88888888877777777777765 345544433211 1001245566666665
No 386
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=27.37 E-value=76 Score=20.12 Aligned_cols=40 Identities=8% Similarity=0.085 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEE-------CChhhHHHHHHHHcCccE
Q psy9352 65 QQSLADLDQKFRALGSRLYVVQ-------GKPEEVFPDIFKTWNIKL 104 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~~L~v~~-------g~~~~~l~~l~~~~~~~~ 104 (146)
+..|.++.+++...|+.++-+. .+..+.+.+++++++++-
T Consensus 48 ~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (158)
T 3eyt_A 48 IPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKF 94 (158)
T ss_dssp HHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCS
T ss_pred hHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCc
Confidence 5778888888877787777776 356677888888877753
No 387
>1mi3_A Xylose reductase, XR; aldo-keto reductase, beta-alpha barrel, dimer, oxidoreductase; HET: NAD; 1.80A {Candida tenuis} SCOP: c.1.7.1 PDB: 1jez_A* 1k8c_A* 1ye6_A* 1ye4_A* 1sm9_A* 1r38_A* 1z9a_A*
Probab=27.36 E-value=1.9e+02 Score=21.43 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=33.8
Q ss_pred EECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 85 VQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 85 ~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
+..-..+.+.++.+..++.-.+..-++.+...+ ..+...|++.||.+..+.
T Consensus 168 vSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~--~~l~~~~~~~gi~v~a~s 218 (322)
T 1mi3_A 168 VSNFPGALLLDLLRGATIKPAVLQVEHHPYLQQ--PKLIEFAQKAGVTITAYS 218 (322)
T ss_dssp EESCCHHHHHHHHHHCSSCCCEEEEECBTTBCC--HHHHHHHHHTTCEEEEEC
T ss_pred EcCCCHHHHHHHHHhCCCCceEeecccCcCcCc--HHHHHHHHHcCCEEEEEC
Confidence 445556778888887655333444456555333 468889999999988764
No 388
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=27.32 E-value=1.1e+02 Score=20.30 Aligned_cols=43 Identities=7% Similarity=0.034 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhcCCeE--EEEE----CChhhHHHHHHHHcCccEE
Q psy9352 63 FLQQSLADLDQKFRALGSRL--YVVQ----GKPEEVFPDIFKTWNIKLL 105 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L--~v~~----g~~~~~l~~l~~~~~~~~v 105 (146)
-....|.++++.+++.|..+ +.+. .+..+.+.+++++++++..
T Consensus 50 ~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~~~~~~~ 98 (170)
T 4hde_A 50 PMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTEDTS 98 (170)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTTCSCCT
T ss_pred HHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHHHHHHHcCCCCC
Confidence 34567788888888777554 4343 3556888999999877643
No 389
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=27.28 E-value=1.8e+02 Score=23.48 Aligned_cols=76 Identities=12% Similarity=0.151 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECChh-hHHHHHHHHc---CccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQGKPE-EVFPDIFKTW---NIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~-~~l~~l~~~~---~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.|+.+.+..+++.+.. +.-+.-+.|-.. .++..++.+. ++..|+++..... ..+.+...+..+++.||+++.++
T Consensus 215 ~~~~~~i~~i~~~v~~-~kvlvalSGGvDSsvla~ll~~~~G~~v~av~vd~g~~~-~~e~~~~~~~~a~~lgi~~~vv~ 292 (527)
T 3tqi_A 215 HIIEDSIRDIQEKVGK-EQVIVGLSGGVDSAVTATLVHKAIGDQLVCVLVDTGLLR-LNEVDEVLNVFQKHLGAKVICVD 292 (527)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEECTTTHHHHHHHHHHHHHHGGGEEEEEECCSCSC-TTHHHHHHHHHTTSSCCEEEEEC
T ss_pred HHHHHHHHHHHHhcCC-CeEEEEEecCcCHHHHHHHHHHHhCCeEEEEEeccCCCC-hhHHHHHHHHHHHHcCCcEEEEe
Confidence 3555666677766654 333444556544 3444455443 4566777544332 22333234447788999998876
Q ss_pred CC
Q psy9352 138 SH 139 (146)
Q Consensus 138 ~~ 139 (146)
-.
T Consensus 293 ~~ 294 (527)
T 3tqi_A 293 AK 294 (527)
T ss_dssp CH
T ss_pred Ch
Confidence 43
No 390
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=27.28 E-value=1.9e+02 Score=21.82 Aligned_cols=64 Identities=8% Similarity=-0.130 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCeEEEEECChhhHHHHH--HHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEEVFPDI--FKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~~l~~l--~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
++++-|+.-+++++++...+..-.+-. +-+.| .+|++++..+....+-+ .+.+++++.|+.+..
T Consensus 79 ~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPla~~~~ea~-~l~~~a~~~g~~l~v 144 (361)
T 3u3x_A 79 TAEEILEDENIGLIVSAAVSSERAELAIRAMQHG-KDVLVDKPGMTSFDQLA-KLRRVQAETGRIFSI 144 (361)
T ss_dssp CHHHHHTCTTCCEEEECCCHHHHHHHHHHHHHTT-CEEEEESCSCSSHHHHH-HHHHHHHTTCCCEEE
T ss_pred CHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHCC-CeEEEeCCCCCCHHHHH-HHHHHHHHcCCEEEE
Confidence 455556656788877765544322111 11223 58888887665444433 566777777776543
No 391
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=27.18 E-value=1.3e+02 Score=20.04 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCC-eE-EEEECChhhHHHHHHHHcCccEEEEe
Q psy9352 66 QSLADLDQKFRALGS-RL-YVVQGKPEEVFPDIFKTWNIKLLTWE 108 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~-~L-~v~~g~~~~~l~~l~~~~~~~~v~~~ 108 (146)
+.+.++-+.|++.|. .. +++=|.+...-...+++.|++.+|..
T Consensus 84 ~~~~~~i~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~~~ 128 (161)
T 2yxb_A 84 HLMKRLMAKLRELGADDIPVVLGGTIPIPDLEPLRSLGIREIFLP 128 (161)
T ss_dssp HHHHHHHHHHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEEECT
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCchhcHHHHHHCCCcEEECC
Confidence 445555556666653 23 33446555443456788999988864
No 392
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=27.16 E-value=1.5e+02 Score=20.32 Aligned_cols=38 Identities=8% Similarity=0.282 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHc
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW 100 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 100 (146)
.++.++|..+.++-- ....++|+.....+.-.++++++
T Consensus 14 ~~l~~~l~Sl~~q~~-~~~eiivvDd~S~d~t~~~~~~~ 51 (255)
T 1qg8_A 14 DYVAKSISSILSQTF-SDFELFIMDDNSNEETLNVIRPF 51 (255)
T ss_dssp TTHHHHHHHHHTCSC-CCEEEEEEECSCCHHHHHHHGGG
T ss_pred HHHHHHHHHHHhccC-CceEEEEEECCCCchHHHHHHHH
Confidence 577788888866432 24567777655444445666655
No 393
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=27.00 E-value=75 Score=21.98 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECC-hhhHHHHHHH
Q psy9352 64 LQQSLADLDQKFRALGSRLYVVQGK-PEEVFPDIFK 98 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~~L~v~~g~-~~~~l~~l~~ 98 (146)
..+.|.++.+..++.|+.|.|..|- +.+.=.+|.+
T Consensus 37 aa~al~~m~~~a~~~Gi~l~i~sgyRs~~~Q~~Ly~ 72 (179)
T 2vo9_A 37 TSDKTRNVIKKMAKEGIYLCVAQGYRSTAEQNALYA 72 (179)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEECCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEECCHHHHHHHHH
Confidence 5588999999999999999999974 3333345543
No 394
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=26.82 E-value=1.1e+02 Score=22.76 Aligned_cols=38 Identities=13% Similarity=0.238 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCeEEEEECC-hhhHHHHHHHHcCccEE
Q psy9352 68 LADLDQKFRALGSRLYVVQGK-PEEVFPDIFKTWNIKLL 105 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~-~~~~l~~l~~~~~~~~v 105 (146)
|.+|.+.+++.|++.++.+.. +...+..++++.|+..+
T Consensus 221 l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~ 259 (294)
T 3hh8_A 221 ISSLIEKLKVIKPSALFVESSVDRRPMETVSKDSGIPIY 259 (294)
T ss_dssp HHHHHHHHHHSCCSCEEEETTSCSHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHhCCcEE
Confidence 667777778888887777643 34566777888888776
No 395
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=26.62 E-value=2.1e+02 Score=21.67 Aligned_cols=63 Identities=10% Similarity=0.228 Sum_probs=43.0
Q ss_pred EEEEECCCccCCCCCChh-hHHHHHHHHHHHHHHHH-hc------CCeEEEEECChhhHHHHHHHHcCccEEEEe
Q psy9352 42 PLYILDPHFRKFMRVGPN-RWRFLQQSLADLDQKFR-AL------GSRLYVVQGKPEEVFPDIFKTWNIKLLTWE 108 (146)
Q Consensus 42 ~vfv~d~~~~~~~~~~~~-r~~Fl~~sL~~L~~~L~-~~------g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 108 (146)
+++++|+ |.. -+|+. -..|....++.+-+.++ +. |+++++..+.....++.+ .+.+++.|-+.
T Consensus 213 ~i~i~D~--~~~-~lsp~~f~ef~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~G~~~~l~~l-~~~g~d~i~~d 283 (367)
T 1r3s_A 213 ALQLFES--HAG-HLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAKDGHFALEEL-AQAGYEVVGLD 283 (367)
T ss_dssp EEEEEET--TGG-GSCHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEETTCGGGHHHH-TTSSCSEEECC
T ss_pred EEEEecC--ccc-cCCHHHHHHHhHHHHHHHHHHHhhhhccccCCCCCeEEEcCCcHHHHHHH-HhcCCCEEEeC
Confidence 6778887 332 34554 34689999999999888 66 688877665446666654 45788877663
No 396
>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}
Probab=26.57 E-value=70 Score=22.03 Aligned_cols=65 Identities=11% Similarity=0.073 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHH-c----CccEEEEee--ecChhHHHHHHHHHHHHHhCCCe
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT-W----NIKLLTWEY--DIEPYAKKRDGLVEDMAKEYKVK 132 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~-~----~~~~v~~~~--~~~~~~~~rd~~v~~~~~~~~i~ 132 (146)
++.++-+.|++.|+++.+..+.+.+.+.....+ . -++.+++.. +... .+-.-..+..++++.|+.
T Consensus 116 ~~~~~l~~l~~~g~~~~i~sn~~~~~~~~~l~~~~~l~~~f~~~~~~~~~~~~~-~Kp~~~~~~~~~~~lgi~ 187 (250)
T 3l5k_A 116 GAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFSHIVLGDDPEVQH-GKPDPDIFLACAKRFSPP 187 (250)
T ss_dssp THHHHHHHHHHTTCCEEEECSCCHHHHHHHTTTCHHHHTTSSCEECTTCTTCCS-CTTSTHHHHHHHHTSSSC
T ss_pred CHHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHhccCHHhheeeEEecchhhccC-CCCChHHHHHHHHHcCCC
Confidence 455666778889999999988765554443322 1 245566554 3221 111122566777777764
No 397
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=26.56 E-value=1.7e+02 Score=20.64 Aligned_cols=56 Identities=5% Similarity=-0.177 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCeEEEEEC--------ChhhHHHHHHHHcCccEEEEeeecCh
Q psy9352 58 PNRWRFLQQSLADLDQKFRALGSRLYVVQG--------KPEEVFPDIFKTWNIKLLTWEYDIEP 113 (146)
Q Consensus 58 ~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~~~~~~~~v~~~~~~~~ 113 (146)
...+..+.++|..+.+..++.|+.+.+-.- ...+.+.+++++.+-..|-+.-|.+.
T Consensus 125 ~~~~~~~~~~l~~l~~~a~~~gv~l~lEn~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~D~~h 188 (290)
T 2qul_A 125 RPYVDRAIESVRRVIKVAEDYGIIYALEVVNRFEQWLCNDAKEAIAFADAVDSPACKVQLDTFH 188 (290)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHTCEEEEECCCTTTCSSCCSHHHHHHHHHHHCCTTEEEEEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEEeCccccccccCCHHHHHHHHHHcCCCCEEEEEEchh
Confidence 445678889999999999999999887642 23456678888877666777667653
No 398
>1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel, aldo-ketoreductase, NADPH dependant, BACT targets at IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP: c.1.7.1
Probab=26.52 E-value=2e+02 Score=21.30 Aligned_cols=46 Identities=7% Similarity=0.138 Sum_probs=23.3
Q ss_pred hhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 90 EEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 90 ~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.+.+.++.+..++.-++..-++.+..++ ..+...|++.||.+..+.
T Consensus 163 ~~~l~~~~~~~~~~p~v~Q~~~~~~~~~--~~l~~~~~~~gI~v~a~s 208 (296)
T 1mzr_A 163 IHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWS 208 (296)
T ss_dssp HHHHHHHHHHHSCCCSEEEEECBTTBCC--HHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHhcCCCceEEeeecccccCC--HHHHHHHHHCCCeEEEec
Confidence 3444444443333222333344443332 357777888888877653
No 399
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=26.41 E-value=2.2e+02 Score=21.95 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcC-CeEEEEEC-Ch------hhHHHHHHHHcCccEEEEee-ecChhHHHHHHHHHHHHHhCCCeEE
Q psy9352 68 LADLDQKFRALG-SRLYVVQG-KP------EEVFPDIFKTWNIKLLTWEY-DIEPYAKKRDGLVEDMAKEYKVKVE 134 (146)
Q Consensus 68 L~~L~~~L~~~g-~~L~v~~g-~~------~~~l~~l~~~~~~~~v~~~~-~~~~~~~~rd~~v~~~~~~~~i~~~ 134 (146)
+.+|.+.++++| .+..|+.+ .. .+.+.+..++.+++.+.+.. +..|....-+ .+.+.+++.++.+.
T Consensus 31 l~~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~-~~~~~~~~~~~D~I 105 (407)
T 1vlj_A 31 IPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVH-EAVEVAKKEKVEAV 105 (407)
T ss_dssp GGGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHH-HHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHH-HHHHHHHhcCCCEE
Confidence 344455566666 56666665 32 22233334445666555543 2223222223 45555566666443
No 400
>2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium smegmatis} PDB: 2wzt_A
Probab=26.34 E-value=1.9e+02 Score=21.11 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=11.0
Q ss_pred HHHHHHHhCCCeEEEe
Q psy9352 121 LVEDMAKEYKVKVEQH 136 (146)
Q Consensus 121 ~v~~~~~~~~i~~~~~ 136 (146)
.+...|++.||.+..+
T Consensus 180 ~l~~~~~~~gi~v~a~ 195 (283)
T 2wzm_A 180 ALREVNAGYNIVTEAY 195 (283)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHCCCEEEEe
Confidence 4666777777777655
No 401
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=26.34 E-value=78 Score=17.26 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHH
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~ 99 (146)
.+.+|++.|+++|.+ ..|.-.+.+.+|.+.
T Consensus 14 kV~eLK~eLk~RgL~---~~G~Ka~Li~RL~~~ 43 (50)
T 1zrj_A 14 KVNELREELQRRGLD---TRGLKAELAERLQAA 43 (50)
T ss_dssp CHHHHHHHHHHTTCC---CCSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCC---CCCcHHHHHHHHHHH
Confidence 478999999999976 357777777666543
No 402
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=26.22 E-value=1.2e+02 Score=23.26 Aligned_cols=63 Identities=8% Similarity=0.053 Sum_probs=41.9
Q ss_pred EEEEECCCccCCCCCChh-hHHHHHHHHHHHHHHHHhc----CCeEEEEECChhhHHHHHHHHcCccEEEEe
Q psy9352 42 PLYILDPHFRKFMRVGPN-RWRFLQQSLADLDQKFRAL----GSRLYVVQGKPEEVFPDIFKTWNIKLLTWE 108 (146)
Q Consensus 42 ~vfv~d~~~~~~~~~~~~-r~~Fl~~sL~~L~~~L~~~----g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 108 (146)
+++++|+. .. .+++. -.+|....++.+-+.+++. |++++.+.+.....+..+ .+.+++.|-++
T Consensus 213 ~i~ifDs~--~~-~Lsp~~f~ef~~Py~k~i~~~l~~~~~g~~~pvi~f~~g~~~~l~~l-~~~g~d~i~~d 280 (368)
T 4exq_A 213 AVMIFDTW--GG-ALADGAYQRFSLDYIRRVVAQLKREHDGARVPAIAFTKGGGLWLEDL-AATGVDAVGLD 280 (368)
T ss_dssp EEEEEETT--GG-GSCTTHHHHHTHHHHHHHHHTSCCEETTEECCEEEEETTCGGGHHHH-HTSSCSEEECC
T ss_pred EEEEeCCc--cc-cCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHHHHHH-HHhCCCEEeeC
Confidence 56777863 22 23433 2368889999998888875 578777666556666665 45788777653
No 403
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=26.10 E-value=44 Score=21.64 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=27.3
Q ss_pred HHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeE
Q psy9352 93 FPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKV 133 (146)
Q Consensus 93 l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~ 133 (146)
|.+-+.+.||+.|++++.--.| --|-+.+.+.+.+.|+.|
T Consensus 77 lA~Ral~~GI~~vvfDrgg~~y-hGrV~Ala~~are~Gl~f 116 (116)
T 3r8s_O 77 VAERALEKGIKDVSFDRSGFQY-HGRVQALADAAREAGLQF 116 (116)
T ss_dssp HHHHHHTTTCCCCEEECTTSCS-SSHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHCCCCEEEEecCCCcc-cHHHHHHHHHHHHhCCCC
Confidence 4444556799999997643222 345668888888888864
No 404
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=26.09 E-value=1.4e+02 Score=21.09 Aligned_cols=60 Identities=10% Similarity=-0.049 Sum_probs=39.8
Q ss_pred HHHHHHhcCCeEEEE-ECChhhHHHHHHHHcCccEEEE--eeecChhHHHHHHHHHHHHHhCCC
Q psy9352 71 LDQKFRALGSRLYVV-QGKPEEVFPDIFKTWNIKLLTW--EYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 71 L~~~L~~~g~~L~v~-~g~~~~~l~~l~~~~~~~~v~~--~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
+..-|+..|.+.+.+ ..-|.+.|.+.+.+.+++.|.. +.-.++....-. .+.+.+++.|.
T Consensus 112 v~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~-~~i~~l~~~~~ 174 (215)
T 3ezx_A 112 VTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQK-DLMDRLNEEKL 174 (215)
T ss_dssp HHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHH-HHHHHHHHTTC
T ss_pred HHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHH-HHHHHHHHcCC
Confidence 344567778776544 3567788888999999999999 766555433333 45555666654
No 405
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A
Probab=25.98 E-value=63 Score=23.67 Aligned_cols=78 Identities=18% Similarity=0.199 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECChh----hHHHHHHHH-----cCccEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPE----EVFPDIFKT-----WNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 61 ~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~----~~l~~l~~~-----~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
..-+.+.+.++++.+++.++++.|+.|.-. +....+.+. -+.+.|.++..+......-.+.+..+.+..++
T Consensus 52 ~~~i~~~~~~l~~~~~~~~~~i~I~~G~Ev~~~~~~~~~l~~~~~~~l~~~~~vl~e~~~~~~~~~~~~~l~~i~~~g~v 131 (262)
T 3qy7_A 52 PAAVREAADQLNKRLIKEDIPLHVLPGQEIRIYGEVEQDLAKRQLLSLNDTKYILIEFPFDHVPRYAEQLFYDLQLKGYI 131 (262)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEECCCEEECCTTHHHHHHTTCSCCGGGSSEEEEECCTTCCCTTHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEecCeEEecchhHHHHHhcCCCcEECCceEEEEeCCCccCHHHHHHHHHHHHHCCCc
Confidence 345678888899888888788877765422 222233321 12345666544332222233366666665667
Q ss_pred eEEEecC
Q psy9352 132 KVEQHVS 138 (146)
Q Consensus 132 ~~~~~~~ 138 (146)
++....+
T Consensus 132 ~ILAHPe 138 (262)
T 3qy7_A 132 PVIAHPE 138 (262)
T ss_dssp EEEECGG
T ss_pred EEEECCC
Confidence 7776654
No 406
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=25.96 E-value=1.4e+02 Score=19.70 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEC--------ChhhHHHHHHHHcCccEEEE
Q psy9352 64 LQQSLADLDQKFRALGSRLYVVQG--------KPEEVFPDIFKTWNIKLLTW 107 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~~~~~~~~v~~ 107 (146)
.+..|.++.+++.+.|+.++.+.- +..+.+.+++++++++--++
T Consensus 65 ~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~ 116 (183)
T 2obi_A 65 NYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMF 116 (183)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEB
T ss_pred HHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEE
Confidence 457788999999888888888763 24567888999888864444
No 407
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} SCOP: c.1.7.0
Probab=25.91 E-value=1.5e+02 Score=22.31 Aligned_cols=17 Identities=12% Similarity=-0.109 Sum_probs=12.0
Q ss_pred HHHHHHHHhCCCeEEEe
Q psy9352 120 GLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 120 ~~v~~~~~~~~i~~~~~ 136 (146)
..+...|++.||.+..+
T Consensus 208 ~~l~~~~~~~gi~v~a~ 224 (348)
T 3n2t_A 208 KDILPYAEKHNAVVLAY 224 (348)
T ss_dssp GTHHHHHHHHTCEEEEB
T ss_pred HHHHHHHHHcCCeEEEe
Confidence 45677777778877765
No 408
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=25.85 E-value=1.4e+02 Score=19.35 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=34.2
Q ss_pred HHhcC-CeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 75 FRALG-SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 75 L~~~g-~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
+++.| ++..+. ..+.+ +.+++++.+++.|+...++.+.. ..+.+.+++.|+.+..
T Consensus 60 l~~~~~vd~v~~-~~~~~-f~~~~~~l~~~~iv~G~d~~f~~----~~l~~~~~~~g~~v~v 115 (143)
T 3glv_A 60 ISELKVVDRAIL-GHEGD-MMKTVIEVKPDIITLGYDQKFDE----AELQSKINKLGITVKI 115 (143)
T ss_dssp HTTBTTCSEEEE-CCTTC-HHHHHHHHCCSEEEECTTCHHHH----HHHHHHHHHHTCCCEE
T ss_pred HHhcCCCCEEEE-cCchh-HHHHHHhcCCCEEEECCCCCCCH----HHHHHHHHHcCCeEEE
Confidence 34455 666554 34545 44688899999999987764321 1466666666755443
No 409
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=25.75 E-value=98 Score=23.36 Aligned_cols=63 Identities=6% Similarity=-0.034 Sum_probs=44.1
Q ss_pred EEEEECCCccCCCCCChh-hHHHHHHHHHHHHHHHHhc----CCeEEEEECChhhHHHHHHHHcCccEEEEe
Q psy9352 42 PLYILDPHFRKFMRVGPN-RWRFLQQSLADLDQKFRAL----GSRLYVVQGKPEEVFPDIFKTWNIKLLTWE 108 (146)
Q Consensus 42 ~vfv~d~~~~~~~~~~~~-r~~Fl~~sL~~L~~~L~~~----g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 108 (146)
+++++|+. .. .+|+. -..|....++.+-+.+++. |++.+.+.|.....++.++ +.+++.|-+.
T Consensus 203 ~i~i~d~~--~~-~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~~~ii~~~~g~~~~l~~l~-~~g~d~i~~d 270 (354)
T 3cyv_A 203 AVMIFDTW--GG-VLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMA-ETGCDALGLD 270 (354)
T ss_dssp EEEEECTT--GG-GSCHHHHHHHTHHHHHHHHHHSCSEETTEECCEEEECTTTTTTHHHHH-TTSCSEEECC
T ss_pred EEEEeCCc--cc-cCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEECCCHHHHHHHHH-hcCCCEEEeC
Confidence 56778863 22 34543 2468999999999988877 4777667777766777666 4788888764
No 410
>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A
Probab=25.70 E-value=1.1e+02 Score=20.30 Aligned_cols=39 Identities=8% Similarity=0.086 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEE
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLT 106 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~ 106 (146)
++.++-+.|++. +++.+..+.+...+..+.+..++...+
T Consensus 73 g~~~~l~~l~~~-~~~~i~s~~~~~~~~~~l~~~gl~~~f 111 (206)
T 1rku_A 73 GAVEFVDWLRER-FQVVILSDTFYEFSQPLMRQLGFPTLL 111 (206)
T ss_dssp THHHHHHHHHTT-SEEEEEEEEEHHHHHHHHHHTTCCCEE
T ss_pred cHHHHHHHHHhc-CcEEEEECChHHHHHHHHHHcCCccee
Confidence 345555667777 899999988888888888888876544
No 411
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=25.69 E-value=1.9e+02 Score=21.55 Aligned_cols=63 Identities=10% Similarity=0.090 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCeEEEEECChhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
++++-|+.-+++++++...+.. .....+ +.| .+|++++..+....+-+ .+.+++++.|+.+..
T Consensus 58 ~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al-~aG-khV~~EKPla~~~~e~~-~l~~~a~~~g~~~~v 123 (352)
T 3kux_A 58 DPQMLFNDPSIDLIVIPTPNDTHFPLAQSAL-AAG-KHVVVDKPFTVTLSQAN-ALKEHADDAGLLLSV 123 (352)
T ss_dssp CHHHHHHCSSCCEEEECSCTTTHHHHHHHHH-HTT-CEEEECSSCCSCHHHHH-HHHHHHHHTTCCEEE
T ss_pred CHHHHhcCCCCCEEEEeCChHHHHHHHHHHH-HCC-CcEEEECCCcCCHHHHH-HHHHHHHHcCCeEEE
Confidence 3444455566777777654332 222222 223 57888877554433333 566777777776644
No 412
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=25.65 E-value=63 Score=20.79 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCeEEEEECChhhHHHHHHHH-cCccEEEEeeec
Q psy9352 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKT-WNIKLLTWEYDI 111 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~-~~~~~v~~~~~~ 111 (146)
+...++.++..|....+..++..+.++.+..+ ...+.|+++..+
T Consensus 76 ~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~ 120 (171)
T 1ws6_A 76 VRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY 120 (171)
T ss_dssp HHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT
T ss_pred HHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCC
Confidence 44445555555657788889988766655432 257889987554
No 413
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=25.63 E-value=1.2e+02 Score=21.59 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEee
Q psy9352 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEY 109 (146)
Q Consensus 69 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~ 109 (146)
.++-+.+++.|..+++..-+..+.+.+++.+.|++.|+++.
T Consensus 184 ~~~v~~~~~~G~~v~~wTvn~~~~~~~~l~~~GvdgIiTD~ 224 (248)
T 1zcc_A 184 PGIIEASRKAGLEIMVYYGGDDMAVHREIATSDVDYINLDR 224 (248)
T ss_dssp HHHHHHHHHHTCEEEEECCCCCHHHHHHHHHSSCSEEEESC
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCEEEECC
Confidence 45667778889999998766667777735568999999964
No 414
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=25.62 E-value=1.8e+02 Score=20.62 Aligned_cols=55 Identities=13% Similarity=0.070 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCeEEEEEC--------ChhhHHHHHHHHcCccEEEEeeecCh
Q psy9352 59 NRWRFLQQSLADLDQKFRALGSRLYVVQG--------KPEEVFPDIFKTWNIKLLTWEYDIEP 113 (146)
Q Consensus 59 ~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~~~~~~~~v~~~~~~~~ 113 (146)
..+..+.++|..+....++.|+.+.+-.- ...+.+.+++++.+-..|-+.-|.+.
T Consensus 125 ~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~~~~~~~~~~~~~~~l~~~v~~~~vg~~~D~~h 187 (294)
T 3vni_A 125 GDWERSVESVREVAKVAEACGVDFCLEVLNRFENYLINTAQEGVDFVKQVDHNNVKVMLDTFH 187 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEECCCTTTCSSCCSHHHHHHHHHHHCCTTEEEEEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEEecCcccCcccCCHHHHHHHHHHcCCCCEEEEEEhhh
Confidence 44667889999999999999999887642 23456678898877666777667653
No 415
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=25.62 E-value=1.7e+02 Score=20.35 Aligned_cols=36 Identities=11% Similarity=0.275 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCeEEEEEC---ChhhHHHHHHHHcCcc
Q psy9352 68 LADLDQKFRALGSRLYVVQG---KPEEVFPDIFKTWNIK 103 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g---~~~~~l~~l~~~~~~~ 103 (146)
-.+.-++|++.|+++.+..| .+...+....++.+..
T Consensus 27 ~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg~~ 65 (266)
T 3pdw_A 27 ACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIP 65 (266)
T ss_dssp HHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 34444567788999999977 5666666777776663
No 416
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=25.61 E-value=78 Score=23.64 Aligned_cols=42 Identities=10% Similarity=0.147 Sum_probs=25.4
Q ss_pred HHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 95 DIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 95 ~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
..++.-.+.-|+...+.+|.+... .+..+|++.||++..+.+
T Consensus 145 KaIekgkAkLVIIA~DasP~ei~~--~Lp~LC~~~~VPyi~v~s 186 (266)
T 2zkr_f 145 TLVENKKAQLVVIAHDVDPIELVV--FLPALCRKMGVPYCIIKG 186 (266)
T ss_dssp HHHHTTCCSEEEEESCCSSSTTTT--HHHHHHHHHTCCEEEESC
T ss_pred HHHHhCCceEEEEecCCCHHHHHH--HHHHHHHhcCCCEEEECC
Confidence 444555667777777766654332 355666777777766644
No 417
>2pw9_A Putative formate dehydrogenase accessory protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Desulfotalea psychrophila LSV54} SCOP: c.97.1.5
Probab=25.60 E-value=92 Score=23.14 Aligned_cols=29 Identities=7% Similarity=-0.047 Sum_probs=15.2
Q ss_pred EEECChhhHHHHHHHHcCccEEEEeeecC
Q psy9352 84 VVQGKPEEVFPDIFKTWNIKLLTWEYDIE 112 (146)
Q Consensus 84 v~~g~~~~~l~~l~~~~~~~~v~~~~~~~ 112 (146)
+..|.....+-+=+...||..|+.-..++
T Consensus 198 ~~SgR~S~EmV~Kaa~aGIpvlvS~SApT 226 (268)
T 2pw9_A 198 YTTGRLTSDMVLKCARIGIPIIMSRTSPS 226 (268)
T ss_dssp EESSCBCHHHHHHHHHHTCCEEEESSCBC
T ss_pred EEecCchHHHHHHHHHcCCCEEEEccccc
Confidence 55566554444444445666666554444
No 418
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=25.43 E-value=2e+02 Score=20.99 Aligned_cols=67 Identities=12% Similarity=0.004 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCeEEEEE-CCh-----hhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCC------CeEE
Q psy9352 67 SLADLDQKFRALGSRLYVVQ-GKP-----EEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK------VKVE 134 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~-g~~-----~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~------i~~~ 134 (146)
-+.-+.+.|++.|++ .+.. ++. .+.+.++.+..+.++|++..+..-. .+.+++++.| |.+.
T Consensus 192 R~~Gf~~al~~~g~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~nd~~A~------g~~~al~~~G~~vP~disvi 264 (333)
T 3jvd_A 192 RMRGISHAASIYGAE-VTFHFGHYSVESGEEMAQVVFNNGLPDALIVASPRLMA------GVMRAFTRLNVRVPHDVVIG 264 (333)
T ss_dssp HHHHHHHHHHHTTCE-EEEEECCSSHHHHHHHHHHHHHTCCCSEEEECCHHHHH------HHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHHHCCCC-EEEecCCCCHHHHHHHHHHHhcCCCCcEEEECCHHHHH------HHHHHHHHcCCCCCCceEEE
Confidence 355566778888998 5554 432 2345666666568999996654321 2444455554 4588
Q ss_pred EecCCe
Q psy9352 135 QHVSHT 140 (146)
Q Consensus 135 ~~~~~~ 140 (146)
.|++..
T Consensus 265 g~D~~~ 270 (333)
T 3jvd_A 265 GYDDPE 270 (333)
T ss_dssp EESCCG
T ss_pred EECChH
Confidence 887754
No 419
>4gac_A Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldheyde reductase AKR1A4, SMAR1, oxidoreductase; HET: FLC; 1.64A {Mus musculus} PDB: 2alr_A 3h4g_A* 3cv7_A* 3fx4_A* 1ae4_A* 1cwn_A* 1hqt_A*
Probab=25.42 E-value=2e+02 Score=21.12 Aligned_cols=51 Identities=8% Similarity=0.135 Sum_probs=34.5
Q ss_pred EECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 85 VQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 85 ~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
+..-..+.+.++.+..++.-+...-++.+...+. .+...|++.||.+..+.
T Consensus 160 vSn~~~~~l~~~~~~~~~~~~~~q~~~~~~~~~~--~l~~~~~~~gi~~~a~s 210 (324)
T 4gac_A 160 LSNFNSRQIDDVLSVASVRPAVLQVECHPYLAQN--ELIAHCHARGLEVTAYS 210 (324)
T ss_dssp EESCCHHHHHHHHHHCSSCCCEEEEECBTTBCCH--HHHHHHHHHTCEEEEES
T ss_pred CCCCCHHHHHHHHHhCCCCcceeeeccCchhhHH--HHHHHHHHhceeeeecC
Confidence 3444566777887777776555555665554443 58888999999888763
No 420
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=25.37 E-value=1.3e+02 Score=20.50 Aligned_cols=40 Identities=8% Similarity=0.112 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEE
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLT 106 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~ 106 (146)
-+.+.-+.+.+.|..+++..+...+....++.+.|+.+|-
T Consensus 66 ~l~~~v~kI~~~g~nVVl~~k~I~d~a~~~l~k~gI~~vr 105 (178)
T 1gml_A 66 YIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIR 105 (178)
T ss_dssp HHHHHHHHHHTTCCSEEEESSCBCHHHHHHHHHTTCEEEC
T ss_pred HHHHHHHHHhhcCCcEEEECCcccHHHHHHHHHCCCEEEe
Confidence 4556667778889999999988888888899998886554
No 421
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=25.32 E-value=1.1e+02 Score=20.51 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHc
Q psy9352 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW 100 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 100 (146)
.+..|.++.+++.+.|+.++.+.-++.+.+.+++++.
T Consensus 64 ~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~ 100 (195)
T 2bmx_A 64 EIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQH 100 (195)
T ss_dssp HHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHh
Confidence 4567888889998889999888887777778887775
No 422
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=25.32 E-value=1.3e+02 Score=25.41 Aligned_cols=59 Identities=14% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChhhH---HHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 65 QQSLADLDQKFRALGSRLYVVQGKPEEV---FPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~---l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
.+.+.++.+.|++.|..-+++-|.|.+. .+++.+ |++.++........ .+.+++++.|+
T Consensus 574 ~~~~~~v~~~Lk~aG~~~V~vgG~P~~d~~~~~~~~~--G~D~~~~~g~~~~~------~l~~l~~~lg~ 635 (637)
T 1req_B 574 AQQGLEVAKALKAAGAKALYLSGAFKEFGDDAAEAEK--LIDGRLFMGMDVVD------TLSSTLDILGV 635 (637)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESCGGGGGGGHHHHHH--HCCCEECTTCCHHH------HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCeEEEeCCCCccchhhHHHHh--ccceEecCCcCHHH------HHHHHHHHhCC
No 423
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=25.15 E-value=54 Score=24.68 Aligned_cols=41 Identities=12% Similarity=0.086 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCeEEEEEC-ChhhHHHHHHHHcCccEEEEe
Q psy9352 68 LADLDQKFRALGSRLYVVQG-KPEEVFPDIFKTWNIKLLTWE 108 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g-~~~~~l~~l~~~~~~~~v~~~ 108 (146)
|.+|.+.+++.|++.++.+- .+......++++.|+..+..+
T Consensus 228 l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~e~g~~v~~l~ 269 (312)
T 2o1e_A 228 LAKLKTYAKEHNVKVIYFEEIASSKVADTLASEIGAKTEVLN 269 (312)
T ss_dssp HHHHHHHTTSSCCCEEECSSCCCHHHHHHHHHHTCCEEECCC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCcEEEec
Confidence 77888888999999888763 444677888889999877653
No 424
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=25.15 E-value=1.8e+02 Score=20.33 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEC--------ChhhHHHHHHH------HcCccEEEE
Q psy9352 65 QQSLADLDQKFRALGSRLYVVQG--------KPEEVFPDIFK------TWNIKLLTW 107 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~~------~~~~~~v~~ 107 (146)
+..|.+|.+++++.|..++-+.- +..+.+.++++ +++++--++
T Consensus 74 ~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fpll 130 (215)
T 2i3y_A 74 YPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLF 130 (215)
T ss_dssp HHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEB
T ss_pred HHHHHHHHHHhccCCeEEEEEEccccCcCCCCCHHHHHHHHHhccchhccCccceeE
Confidence 56799999999988877776641 23466788988 888764333
No 425
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=25.04 E-value=1.1e+02 Score=23.11 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCeEEEEECChhhH---HHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeE
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEEV---FPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKV 133 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~~---l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~ 133 (146)
++++-|+.-+++++++...+..- +...+ +.| .+|++++..+....+-+ .+.+++++.|+.+
T Consensus 78 ~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al-~aG-k~Vl~EKPla~~~~e~~-~l~~~a~~~g~~~ 141 (357)
T 3ec7_A 78 DYHDLINDKDVEVVIITASNEAHADVAVAAL-NAN-KYVFCEKPLAVTAADCQ-RVIEAEQKNGKRM 141 (357)
T ss_dssp SHHHHHHCTTCCEEEECSCGGGHHHHHHHHH-HTT-CEEEEESSSCSSHHHHH-HHHHHHHHHTSCC
T ss_pred CHHHHhcCCCCCEEEEcCCcHHHHHHHHHHH-HCC-CCEEeecCccCCHHHHH-HHHHHHHHhCCeE
Confidence 45555555567777776544432 22222 223 67888877654433333 5666667777655
No 426
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=24.87 E-value=1.4e+02 Score=19.67 Aligned_cols=41 Identities=5% Similarity=0.162 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECC--------hhhHHHHHHHH-cCccE
Q psy9352 64 LQQSLADLDQKFRALGSRLYVVQGK--------PEEVFPDIFKT-WNIKL 104 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~~L~v~~g~--------~~~~l~~l~~~-~~~~~ 104 (146)
.+..|.++.+++++.|..++.+.-+ ..+.+.+++++ ++++-
T Consensus 67 ~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~ 116 (181)
T 2p31_A 67 HYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSF 116 (181)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCc
Confidence 4567899999999889888877632 45677888888 77653
No 427
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=24.81 E-value=1.5e+02 Score=20.81 Aligned_cols=36 Identities=17% Similarity=0.032 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHH
Q psy9352 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~ 99 (146)
-+..|.++.++++++|..++-+.-++.+...+++++
T Consensus 50 el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~ 85 (224)
T 1prx_A 50 ELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKD 85 (224)
T ss_dssp HHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 356789999999999999988887777666666654
No 428
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=24.72 E-value=1.2e+02 Score=18.20 Aligned_cols=38 Identities=11% Similarity=-0.011 Sum_probs=23.5
Q ss_pred cCCeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHH
Q psy9352 78 LGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAK 116 (146)
Q Consensus 78 ~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~ 116 (146)
.+++++++.+........-+.+.|++. |..+.+.+.+.
T Consensus 75 ~~~pii~~s~~~~~~~~~~~~~~Ga~~-~l~KP~~~~~L 112 (122)
T 3gl9_A 75 KRIPVIVLTAKGGEEDESLALSLGARK-VMRKPFSPSQF 112 (122)
T ss_dssp TTSCEEEEESCCSHHHHHHHHHTTCSE-EEESSCCHHHH
T ss_pred cCCCEEEEecCCchHHHHHHHhcChhh-hccCCCCHHHH
Confidence 467888888765544445555677776 45556665433
No 429
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=24.65 E-value=2.1e+02 Score=21.54 Aligned_cols=63 Identities=8% Similarity=-0.029 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCeEEEEECChhhH---HHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEEV---FPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~~---l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
++++-|+.-.++++++...+..- ..+.+ +.| .+|++++..+....+-+ .+.+++++.|+.+..
T Consensus 58 ~~~~ll~~~~~D~V~i~tp~~~H~~~~~~al-~aG-k~Vl~EKPla~~~~e~~-~l~~~a~~~g~~~~v 123 (364)
T 3e82_A 58 SPEAAVQHPDVDLVVIASPNATHAPLARLAL-NAG-KHVVVDKPFTLDMQEAR-ELIALAEEKQRLLSV 123 (364)
T ss_dssp CHHHHHTCTTCSEEEECSCGGGHHHHHHHHH-HTT-CEEEECSCSCSSHHHHH-HHHHHHHHTTCCEEE
T ss_pred CHHHHhcCCCCCEEEEeCChHHHHHHHHHHH-HCC-CcEEEeCCCcCCHHHHH-HHHHHHHHhCCeEEE
Confidence 44555555567777776554332 22222 223 67888886654433333 567777777876654
No 430
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=24.61 E-value=1.9e+02 Score=20.61 Aligned_cols=72 Identities=11% Similarity=0.016 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEE---CChhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQ---GKPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~---g~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
|+.+-+..+++.+++.|..+.+.. +++.. .+..+. ..+++.|++..... ... ...+. .+.+.||++..+
T Consensus 14 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~-~~~--~~~~~-~~~~~~iPvV~~ 88 (313)
T 2h3h_A 14 YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFI-AEGVNGIAIAPSDP-TAV--IPTIK-KALEMGIPVVTL 88 (313)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHH-HTTCSEEEECCSST-TTT--HHHHH-HHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCh-HHH--HHHHH-HHHHCCCeEEEe
Confidence 667778888888999999998864 34433 344444 35888888743221 111 11333 345689999988
Q ss_pred cCC
Q psy9352 137 VSH 139 (146)
Q Consensus 137 ~~~ 139 (146)
+..
T Consensus 89 ~~~ 91 (313)
T 2h3h_A 89 DTD 91 (313)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 431
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=24.55 E-value=1.3e+02 Score=18.49 Aligned_cols=11 Identities=9% Similarity=0.534 Sum_probs=4.7
Q ss_pred HHHHHHHcCcc
Q psy9352 93 FPDIFKTWNIK 103 (146)
Q Consensus 93 l~~l~~~~~~~ 103 (146)
...+.++.++.
T Consensus 33 ak~~L~~~~i~ 43 (114)
T 3h8q_A 33 VKELFSSLGVE 43 (114)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHcCCC
Confidence 34444444443
No 432
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=24.55 E-value=1.9e+02 Score=20.43 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCC--eEEEEECChhhHHHHHHH----HcCccEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 69 ADLDQKFRALGS--RLYVVQGKPEEVFPDIFK----TWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 69 ~~L~~~L~~~g~--~L~v~~g~~~~~l~~l~~----~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
...++.+++.|. .+.++.|+..+.++.+.. ....+.|+++.....+..- -+.+.+.++..|+
T Consensus 118 ~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~~~~~~-l~~~~~~LkpGG~ 185 (247)
T 1sui_A 118 ELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNY-HKRLIDLVKVGGV 185 (247)
T ss_dssp HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCSTTHHHH-HHHHHHHBCTTCC
T ss_pred HHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchHHHHHH-HHHHHHhCCCCeE
Confidence 334445555565 588899999888887753 2457889986544322111 1244455555565
No 433
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase; HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Probab=24.45 E-value=2.3e+02 Score=21.41 Aligned_cols=67 Identities=10% Similarity=0.095 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCC-eEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 65 QQSLADLDQKFRALGS-RLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.++|.+|++ .|. .-+=+..-..+.+.++.+..++.-.+..-++.+...+ ..+...|++.||.+..+.
T Consensus 172 ~~aLe~l~~----~GkIr~iGvSn~~~~~l~~~~~~~~i~p~v~Q~e~~~~~~~--~~ll~~~~~~gI~v~a~s 239 (344)
T 2bgs_A 172 WKEMENLVK----DGLVKDIGVCNYTVTKLNRLLRSAKIPPAVCQMEMHPGWKN--DKIFEACKKHGIHITAYS 239 (344)
T ss_dssp HHHHHHHHH----TTSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCC--HHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHH----cCCccEEEEecCCHHHHHHHHHhcCCCceeeecccCcccCc--HHHHHHHHHCCCEEEEeC
Confidence 344555443 343 2233445556778888887665433344455554333 368888999999988764
No 434
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=24.45 E-value=1.7e+02 Score=19.83 Aligned_cols=43 Identities=12% Similarity=0.055 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCC--eEEEEECChhhHHHHHHHH--cCccEEEEeee
Q psy9352 68 LADLDQKFRALGS--RLYVVQGKPEEVFPDIFKT--WNIKLLTWEYD 110 (146)
Q Consensus 68 L~~L~~~L~~~g~--~L~v~~g~~~~~l~~l~~~--~~~~~v~~~~~ 110 (146)
+...++.+++.|. .+.++.|+..+.++.+... ...+.|+++..
T Consensus 96 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~ 142 (223)
T 3duw_A 96 ADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDAD 142 (223)
T ss_dssp HHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSC
T ss_pred HHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCC
Confidence 3344455555565 4888999998888777654 35888888654
No 435
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=24.44 E-value=98 Score=21.72 Aligned_cols=36 Identities=6% Similarity=-0.153 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHc
Q psy9352 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW 100 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 100 (146)
+..|.++.+++++.|+.++.+.-+..+.+.+++++.
T Consensus 76 ~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~ 111 (221)
T 2c0d_A 76 IIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMP 111 (221)
T ss_dssp HHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHh
Confidence 467888899998889999888877777788888876
No 436
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=24.34 E-value=2.1e+02 Score=21.47 Aligned_cols=63 Identities=8% Similarity=-0.012 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCeEEEEECChhhHH---HHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEEVF---PDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~~l---~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
++++-|+.-+++++++...+..-. .+.++ .| .+|++++..+....+-+ .+.+++++.|+.+..
T Consensus 56 ~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~-aG-khVl~EKP~a~~~~ea~-~l~~~a~~~g~~~~v 121 (359)
T 3e18_A 56 SYEAVLADEKVDAVLIATPNDSHKELAISALE-AG-KHVVCEKPVTMTSEDLL-AIMDVAKRVNKHFMV 121 (359)
T ss_dssp CHHHHHHCTTCCEEEECSCGGGHHHHHHHHHH-TT-CEEEEESSCCSSHHHHH-HHHHHHHHHTCCEEE
T ss_pred CHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH-CC-CCEEeeCCCcCCHHHHH-HHHHHHHHhCCeEEE
Confidence 445555556777777765544322 22222 23 67888877654433333 566667777775543
No 437
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=24.29 E-value=2.5e+02 Score=22.67 Aligned_cols=60 Identities=10% Similarity=0.037 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCe--EEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHH
Q psy9352 66 QSLADLDQKFRALGSR--LYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~--L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~ 125 (146)
-+++.+-+.+-..|.. ..+..|+..+.|.++++-.|+..++.+++.+....+++-++.++
T Consensus 433 ~~~~~~~~~wi~~G~~HH~~~~~g~~~~~L~~~a~~lgie~~~i~~~~~~~~~~~~~~~~~~ 494 (500)
T 4f2d_A 433 PDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEV 494 (500)
T ss_dssp SCHHHHHHHHHHTTCCSEEEEESSCCHHHHHHHHHHTTCEEEEESTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCeEEEECCCCHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 3566656666555654 55567999999999999999999999999887766666444443
No 438
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=24.28 E-value=1.3e+02 Score=22.29 Aligned_cols=62 Identities=13% Similarity=-0.047 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCeEEEEECChhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEE
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVE 134 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~ 134 (146)
++++-|+.-.++.+++...+.. ...+.++ .| .+|++++..+....+-+ .+.+++++.|+.+.
T Consensus 77 d~~ell~~~~iDaV~I~tP~~~H~~~~~~al~-aG-khVl~EKPla~~~~ea~-~l~~~a~~~~~~l~ 141 (350)
T 4had_A 77 SYEEMLASDVIDAVYIPLPTSQHIEWSIKAAD-AG-KHVVCEKPLALKAGDID-AVIAARDRNKVVVT 141 (350)
T ss_dssp SHHHHHHCSSCSEEEECSCGGGHHHHHHHHHH-TT-CEEEECSCCCSSGGGGH-HHHHHHHHHTCCEE
T ss_pred CHHHHhcCCCCCEEEEeCCCchhHHHHHHHHh-cC-CEEEEeCCcccchhhHH-HHHHHHHHcCCcee
Confidence 4455566667777777655443 2222222 23 57888887755433333 56666666776554
No 439
>1nfp_A LUXF gene product; flavin mononucleotide, myristate, flavoprotein; HET: FMN MYR; 1.60A {Photobacterium leiognathi} SCOP: c.1.16.2
Probab=24.26 E-value=1.3e+02 Score=20.96 Aligned_cols=26 Identities=8% Similarity=-0.017 Sum_probs=20.0
Q ss_pred EECChhhHHH-HHH---HHcCccEEEEeee
Q psy9352 85 VQGKPEEVFP-DIF---KTWNIKLLTWEYD 110 (146)
Q Consensus 85 ~~g~~~~~l~-~l~---~~~~~~~v~~~~~ 110 (146)
+.|+|.++.. +|. +..|++.+.+...
T Consensus 170 ~vGtpe~v~~~~l~~~~~~~G~de~~~~~~ 199 (228)
T 1nfp_A 170 AAGNFDTCLHHVAEMAQGLNNKVDFLFCFE 199 (228)
T ss_dssp EEECHHHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred CCcCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 5699998888 664 4579999998654
No 440
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=24.13 E-value=1e+02 Score=20.86 Aligned_cols=37 Identities=11% Similarity=0.028 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHc
Q psy9352 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW 100 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 100 (146)
.+..|.++.+++++.|+.++.+.-++.+...+++++.
T Consensus 55 ~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~ 91 (202)
T 1uul_A 55 EICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIE 91 (202)
T ss_dssp HHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence 3467899999999899999888877777777777655
No 441
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=24.05 E-value=1.9e+02 Score=20.16 Aligned_cols=65 Identities=11% Similarity=0.221 Sum_probs=37.8
Q ss_pred HHHhcCCeEEEEECChhhHHHHHHHHcCccEE---------------EEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 74 KFRALGSRLYVVQGKPEEVFPDIFKTWNIKLL---------------TWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 74 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v---------------~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
+|++.|+.+.+..|.+...++. ..+.+.+.+ .+.....+ +.-..+.+.+++.++.+..+..
T Consensus 41 ~l~~~G~~~~iaTGR~~~~~~~-~~~l~~~~~i~~nGa~i~~~~~~~~~~~~l~~---~~~~~i~~~~~~~~~~~~~~~~ 116 (268)
T 3r4c_A 41 KVHDSGIKIVIATGRAASDLHE-IDAVPYDGVIALNGAECVLRDGSVIRKVAIPA---QDFRKSMELAREFDFAVALELN 116 (268)
T ss_dssp HHHHTTCEEEEECSSCTTCCGG-GTTSCCCEEEEGGGTEEEETTSCEEEECCCCH---HHHHHHHHHHHHTTCEEEEEET
T ss_pred HHHHCCCEEEEEcCCChHHhHH-HHhcCCCcEEEeCCcEEEEcCCeEEEEecCCH---HHHHHHHHHHHHcCcEEEEEEC
Confidence 3456799999999988765543 334333222 22222221 2223566667778888887776
Q ss_pred Ceee
Q psy9352 139 HTLY 142 (146)
Q Consensus 139 ~~L~ 142 (146)
+.++
T Consensus 117 ~~~~ 120 (268)
T 3r4c_A 117 EGVF 120 (268)
T ss_dssp TEEE
T ss_pred CEEE
Confidence 6654
No 442
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=24.02 E-value=2.5e+02 Score=23.11 Aligned_cols=64 Identities=13% Similarity=0.021 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcCCeE-EEEECChhhHHHHHHHHc------CccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 66 QSLADLDQKFRALGSRL-YVVQGKPEEVFPDIFKTW------NIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L-~v~~g~~~~~l~~l~~~~------~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
.||++|...|+++++++ +.-.|...+.=-.++... ++..+-||-...+ ..++.+++.||.+..+
T Consensus 361 gs~eal~~~l~~~~~~v~~~~vg~i~~~dv~~a~~~~~~~~~~a~i~~fnv~~~~-------~~~~~a~~~~v~i~~~ 431 (594)
T 1g7s_A 361 GSLEAVVKILRDMYVPIKVADIGDVSRRDVVNAGIALQEDRVYGAIIAFNVKVIP-------SAAQELKNSDIKLFQG 431 (594)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEESSBCHHHHHHHHHHHTTCTTSCEEEEESCCBCH-------HHHHHTSSSSSEEEEE
T ss_pred CCHHHHHHHHHhCCCcEEecccCCCCHHHHHHHHhhhccCcCCCEEEEeCCcCCH-------HHHHHHHHcCCeEEEC
Confidence 56777777777776664 333465543222333333 4555556554433 2444556677777664
No 443
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=24.01 E-value=1.1e+02 Score=22.80 Aligned_cols=62 Identities=8% Similarity=-0.042 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCeEEEEECChhhHHHHHH--HHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeE
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEEVFPDIF--KTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKV 133 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~--~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~ 133 (146)
++++-|+.-+++++++...+........ -+.| .+|++++..+....+-+ .+.+++++.|+.+
T Consensus 57 ~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~G-k~vl~EKP~a~~~~e~~-~l~~~a~~~g~~~ 120 (344)
T 3mz0_A 57 NDDSLLADENVDAVLVTSWGPAHESSVLKAIKAQ-KYVFCEKPLATTAEGCM-RIVEEEIKVGKRL 120 (344)
T ss_dssp SHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSCSCSSHHHHH-HHHHHHHHHSSCC
T ss_pred CHHHHhcCCCCCEEEECCCchhHHHHHHHHHHCC-CcEEEcCCCCCCHHHHH-HHHHHHHHHCCEE
Confidence 4455555556777777654443222211 1223 57888777654433333 5666667777655
No 444
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=24.00 E-value=1e+02 Score=23.30 Aligned_cols=64 Identities=9% Similarity=0.142 Sum_probs=43.1
Q ss_pred EEEEECCCccCCCCCChh-hHHHHHHHHHHHHHHHHhc--CCeEEEEECChhhHHHHHHHHcCccEEEEee
Q psy9352 42 PLYILDPHFRKFMRVGPN-RWRFLQQSLADLDQKFRAL--GSRLYVVQGKPEEVFPDIFKTWNIKLLTWEY 109 (146)
Q Consensus 42 ~vfv~d~~~~~~~~~~~~-r~~Fl~~sL~~L~~~L~~~--g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~ 109 (146)
.+.++|+ |.. .+|+. -..|....++.+-+.+++. |.+.+.+.|.....++.+. +.+++.+.++.
T Consensus 209 ~iqi~D~--~~~-~lsp~~f~ef~~p~~~~i~~~i~~~~~~~~~ih~c~g~~~~l~~l~-~~g~d~~~~d~ 275 (353)
T 1j93_A 209 AVQIFDS--WAT-ELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLILYASGSGGLLERLP-LTGVDVVSLDW 275 (353)
T ss_dssp EEEEECG--GGG-GSCHHHHHHHTHHHHHHHHHHHHHHSTTCCEEEECSSCTTTGGGGG-GGCCSEEECCT
T ss_pred EEEEeCc--ccc-cCCHHHHHHHhHHHHHHHHHHHHHhCCCCCEEEECCChHHHHHHHH-hcCCCEEEeCC
Confidence 5778887 322 24543 3368888888888888876 6776555666666666664 57888777643
No 445
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=23.97 E-value=50 Score=23.23 Aligned_cols=64 Identities=13% Similarity=-0.030 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcC--ccEEEE-------eee----cChhHHHHHHHHHHHHHhCCCe
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWN--IKLLTW-------EYD----IEPYAKKRDGLVEDMAKEYKVK 132 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~--~~~v~~-------~~~----~~~~~~~rd~~v~~~~~~~~i~ 132 (146)
|+.+-...+|.+.||+..++..... ..++++-+ ++.|+. |-+ .+.+ .+.-+++..||+
T Consensus 17 qG~rlta~eL~~~gI~vtlI~Dsa~---~~~m~~~~~~Vd~VivGAd~v~~nG~v~nkiGT~------~~Al~Ak~~~vP 87 (191)
T 1w2w_B 17 QGSRLTAYELVYDKIPSTLITDSSI---AYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTL------QLAVICKQFGIK 87 (191)
T ss_dssp HHHHTHHHHHHHHTCCBEEBCGGGH---HHHHHHCSSCEEEEEECCSEECTTSCEEEETTHH------HHHHHHHHHTCE
T ss_pred ccHHHHHHHHHHcCCCEEEEechHH---HHHHHhCCCCCCEEEECccEEecCCCEEecccHH------HHHHHHHHcCCC
Confidence 3433346677888999988876554 44555533 444443 322 2332 456667778999
Q ss_pred EEEecC
Q psy9352 133 VEQHVS 138 (146)
Q Consensus 133 ~~~~~~ 138 (146)
|...-.
T Consensus 88 f~V~a~ 93 (191)
T 1w2w_B 88 FFVVAP 93 (191)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 988643
No 446
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto reductase family 7, SSA reductase, barrel; HET: FLC NDP; 2.4A {Homo sapiens}
Probab=23.85 E-value=1.8e+02 Score=22.08 Aligned_cols=16 Identities=0% Similarity=-0.020 Sum_probs=10.0
Q ss_pred HHHHHHHhCCCeEEEe
Q psy9352 121 LVEDMAKEYKVKVEQH 136 (146)
Q Consensus 121 ~v~~~~~~~~i~~~~~ 136 (146)
.+...|++.||.+..+
T Consensus 211 ~l~~~~~~~gi~v~a~ 226 (360)
T 2bp1_A 211 ELFPCLRHFGLRFYAY 226 (360)
T ss_dssp THHHHHHHHTCEEEEE
T ss_pred hHHHHHHHcCCeEEEe
Confidence 4556666667666654
No 447
>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}
Probab=23.74 E-value=1.3e+02 Score=20.05 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcC--ccEEEEeeec
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWN--IKLLTWEYDI 111 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~--~~~v~~~~~~ 111 (146)
++.++=+.|++ |.++.+..+.+...+....+..+ ++.++...+.
T Consensus 103 ~~~~~l~~l~~-~~~~~i~tn~~~~~~~~~l~~l~~~fd~i~~~~~~ 148 (240)
T 3smv_A 103 DTVEALQYLKK-HYKLVILSNIDRNEFKLSNAKLGVEFDHIITAQDV 148 (240)
T ss_dssp THHHHHHHHHH-HSEEEEEESSCHHHHHHHHTTTCSCCSEEEEHHHH
T ss_pred cHHHHHHHHHh-CCeEEEEeCCChhHHHHHHHhcCCccCEEEEcccc
Confidence 34455556666 78999998877776666666543 4677776554
No 448
>1zgd_A Chalcone reductase; polyketide, deoxychalcone, isoflavonoid, biosynthesis, plant protein; HET: NAP; 1.70A {Medicago sativa}
Probab=23.70 E-value=2.2e+02 Score=20.96 Aligned_cols=67 Identities=4% Similarity=0.044 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhcC-CeEEEEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 65 QQSLADLDQKFRALG-SRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g-~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.++|.+|.++ | +.-+=+..-..+.+.++.+..++.-.+..-++.+..++ ..+...|++.||.+..+.
T Consensus 148 ~~ale~l~~~----Gkir~iGvSn~~~~~l~~~~~~~~~~p~~~Q~~~~~~~~~--~~l~~~~~~~gi~v~a~s 215 (312)
T 1zgd_A 148 WESMEESLKL----GLTKAIGVSNFSVKKLENLLSVATVLPAVNQVEMNLAWQQ--KKLREFCNAHGIVLTAFS 215 (312)
T ss_dssp HHHHHHHHHT----TSBSCEEEESCCHHHHHHHHTTCSSCCSEEEEECBTTBCC--HHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHc----CCCCEEEEeCCCHHHHHHHHHhCCCCceEEeeecCcccCC--HHHHHHHHHcCCEEEEec
Confidence 3455555443 3 22233344556777888776544323334455555433 368888999999988764
No 449
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}
Probab=23.67 E-value=2.3e+02 Score=21.20 Aligned_cols=63 Identities=11% Similarity=-0.050 Sum_probs=41.2
Q ss_pred HHHHhcCCeEEEEECChhhHHH-HHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 73 QKFRALGSRLYVVQGKPEEVFP-DIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 73 ~~L~~~g~~L~v~~g~~~~~l~-~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
+++.+.|++.+|. |+..+... ..+++.+++.|++- +|..+..- -+.+.+.+++.|+++..+.|
T Consensus 214 ~~a~~~GvDt~IT-Ge~~~~~~~~~A~E~ginVI~AG-HyATEt~G-v~aL~~~Le~~Glevi~~sG 277 (278)
T 3rxy_A 214 RAYFDHGVRTVLY-IHIAPEEAERLRREGGGNLIVTG-HIASDLVG-INRYVQALEERGVEVVRMSG 277 (278)
T ss_dssp HHHHHTTCCEEEE-SCCCHHHHHHHHHHCSSEEEECC-HHHHHHHH-HHHHHHHHHHTTCEEEECTT
T ss_pred HHHHHcCCCEEEE-ecCchHHHHHHHHHcCCeEEEec-cchHhHHH-HHHHHHHHHHcCCeeeccCC
Confidence 3455679998754 55554444 88999999888873 44332222 23677777889999876543
No 450
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=23.50 E-value=1.9e+02 Score=21.75 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCeEEEEECChh---hHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeE
Q psy9352 70 DLDQKFRALGSRLYVVQGKPE---EVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKV 133 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~---~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~ 133 (146)
++++-|+.-.++++++...+. +...+.++ .| .+|++++..+....+-+ .+.+++++.|+.+
T Consensus 74 ~~~~ll~~~~iD~V~i~tp~~~h~~~~~~al~-~G-k~V~~EKP~a~~~~~~~-~l~~~a~~~~~~~ 137 (383)
T 3oqb_A 74 DLDAALADKNDTMFFDAATTQARPGLLTQAIN-AG-KHVYCEKPIATNFEEAL-EVVKLANSKGVKH 137 (383)
T ss_dssp CHHHHHHCSSCCEEEECSCSSSSHHHHHHHHT-TT-CEEEECSCSCSSHHHHH-HHHHHHHHTTCCE
T ss_pred CHHHHhcCCCCCEEEECCCchHHHHHHHHHHH-CC-CeEEEcCCCCCCHHHHH-HHHHHHHHcCCeE
Confidence 445555555677766653322 22222222 23 56778776654433333 5666666677654
No 451
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}
Probab=23.39 E-value=1.4e+02 Score=20.29 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCe-EEEEECChhhHHHHHHHHcCc
Q psy9352 67 SLADLDQKFRALGSR-LYVVQGKPEEVFPDIFKTWNI 102 (146)
Q Consensus 67 sL~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~~ 102 (146)
++.+...+++++|.. ++.+.-+......+++++.++
T Consensus 64 ~f~~~~~ef~~~gv~~VigIS~D~~~~~~~w~~~~~~ 100 (171)
T 2xhf_A 64 EYLSLYDKFKEEGYHTIACIAVNDPFVMAAWGKTVDP 100 (171)
T ss_dssp HHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCC
Confidence 566677778889997 888898888888999998887
No 452
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=23.38 E-value=97 Score=21.42 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHc
Q psy9352 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW 100 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 100 (146)
-+..|.++.+++++.|+.++.+.-+..+.+.+++++.
T Consensus 67 e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~ 103 (211)
T 2pn8_A 67 EIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTP 103 (211)
T ss_dssp HHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHh
Confidence 4567889999999899999888877777788888766
No 453
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=23.36 E-value=2.3e+02 Score=22.73 Aligned_cols=72 Identities=13% Similarity=0.149 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhcCCeEEE-EECChh-hHHHHHHHHcC--ccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEecC
Q psy9352 63 FLQQSLADLDQKFRALGSRLYV-VQGKPE-EVFPDIFKTWN--IKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHVS 138 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v-~~g~~~-~~l~~l~~~~~--~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~~ 138 (146)
|+.+.+..+++.+.. .++.+ +.|-.. .++..++.+.+ +..|+++....+ ..+.+ .+.+.+++.||+++.++-
T Consensus 195 ~~~~~i~~ir~~~~~--~kvvvalSGGvDSsvla~ll~~~g~~v~av~vd~g~~~-~~e~~-~v~~~~~~lgi~~~vv~~ 270 (503)
T 2ywb_A 195 VLEELLREVRERAGK--DRVLLAVSGGVDSSTLALLLAKAGVDHLAVFVDHGLLR-LGERE-EVEGALRALGVNLLVVDA 270 (503)
T ss_dssp HHHHHHHHHHHHHTT--SEEEEEECSSHHHHHHHHHHHHHTCEEEEEEEECSCSC-TTHHH-HHHHHHHHTTCCEEEEEC
T ss_pred hhHHHHHhhhhhccC--ccEEEEecCCcchHHHHHHHHHcCCeEEEEEEeCCCCC-hHHHH-HHHHHHHHhCCCEEEEEC
Confidence 555566666666543 34443 456444 34455555544 556666544322 12333 677788889999988764
No 454
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=23.32 E-value=1.7e+02 Score=20.92 Aligned_cols=39 Identities=10% Similarity=0.205 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEee
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEY 109 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~ 109 (146)
++-+.+.+.|.++++..-+..+.+.++.+ .|++.|+++.
T Consensus 201 ~~v~~~~~~G~~v~~WTvn~~~~~~~l~~-~GVdgIiTD~ 239 (252)
T 3qvq_A 201 QQVSDIKAAGYKVLAFTINDESLALKLYN-QGLDAVFSDY 239 (252)
T ss_dssp HHHHHHHHTTCEEEEECCCCHHHHHHHHH-TTCCEEEESS
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHH-cCCCEEEeCC
Confidence 45556677788888776555566655554 6888888854
No 455
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=23.23 E-value=1.3e+02 Score=21.36 Aligned_cols=37 Identities=14% Similarity=0.066 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHc
Q psy9352 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW 100 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~ 100 (146)
-+..|.++.+++++.|+.++.+.-++.+...+++++.
T Consensus 96 el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~ 132 (240)
T 3qpm_A 96 EIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITP 132 (240)
T ss_dssp HHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHH
Confidence 4678999999999999999988888888888888764
No 456
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=23.11 E-value=1.5e+02 Score=18.63 Aligned_cols=22 Identities=9% Similarity=0.274 Sum_probs=16.0
Q ss_pred HHHHHHHhcCCeEEEEECChhh
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEE 91 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~ 91 (146)
+.-+.|++.|+.+.+..|.+..
T Consensus 31 ~~l~~l~~~Gi~~~iaTGR~~~ 52 (126)
T 1xpj_A 31 EQLREYHQLGFEIVISTARNMR 52 (126)
T ss_dssp HHHHHHHHTTCEEEEEECTTTT
T ss_pred HHHHHHHhCCCeEEEEeCCChh
Confidence 3334556679999999998754
No 457
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A
Probab=23.10 E-value=61 Score=22.89 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=24.1
Q ss_pred HHHhcCCeEEEEECChhhHHHHHHHHcCcc
Q psy9352 74 KFRALGSRLYVVQGKPEEVFPDIFKTWNIK 103 (146)
Q Consensus 74 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 103 (146)
+|++.|+.+.+..|.+...+..+++..+.+
T Consensus 28 ~l~~~g~~~~i~Tgr~~~~~~~~~~~~~~~ 57 (249)
T 2zos_A 28 ELKDMGFEIIFNSSKTRAEQEYYRKELEVE 57 (249)
T ss_dssp HHHHTTEEEEEBCSSCHHHHHHHHHHHTCC
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 345679999999999988888888877653
No 458
>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}
Probab=23.06 E-value=84 Score=21.47 Aligned_cols=61 Identities=8% Similarity=0.014 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCc--cEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI--KLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 69 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~--~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
.++-+.|++ +.++.++.+.+...+..+.+..+. +.++...+... .+-.-..+..+++..|+
T Consensus 126 ~~~l~~l~~-~~~~~i~s~~~~~~~~~~l~~~g~~f~~~~~~~~~~~-~kp~~~~~~~~~~~lgi 188 (254)
T 3umc_A 126 LAGMHALKA-DYWLAALSNGNTALMLDVARHAGLPWDMLLCADLFGH-YKPDPQVYLGACRLLDL 188 (254)
T ss_dssp HHHHHHHTT-TSEEEECCSSCHHHHHHHHHHHTCCCSEECCHHHHTC-CTTSHHHHHHHHHHHTC
T ss_pred HHHHHHHHh-cCeEEEEeCCCHHHHHHHHHHcCCCcceEEeeccccc-CCCCHHHHHHHHHHcCC
Confidence 334444554 377777777666666667666654 44444333221 11111245555555555
No 459
>3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 3qkz_A*
Probab=22.94 E-value=2.3e+02 Score=20.88 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=32.8
Q ss_pred EECChhhHHHHHHHHcCcc--EEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 85 VQGKPEEVFPDIFKTWNIK--LLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 85 ~~g~~~~~l~~l~~~~~~~--~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
+..-..+.+.++.+..++. -++..-++.+... +..+...|++.||.+..+.
T Consensus 159 vSn~~~~~l~~~~~~~~~~~~p~~~Q~~~~~~~~--~~~l~~~~~~~gi~v~a~s 211 (316)
T 3o3r_A 159 VSNFNHFQIERLLNKPGLKHKPVTNQVECHPYLT--QEKLIQYCHSKGIAVIAYS 211 (316)
T ss_dssp EESCCHHHHHHHHTCTTCCSCCCEEEEECBTTBC--CHHHHHHHHTTTCEEEEEC
T ss_pred EecCCHHHHHHHHHhCCCCCCceEeeccCCcccc--hHHHHHHHHHcCCEEEEec
Confidence 4454566778887765543 2334445555443 3468899999999988763
No 460
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=22.68 E-value=2.1e+02 Score=20.33 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEC--Chhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQG--KPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
|..+-+..+++.+++.|..+.+... ++.. .+..+. ..+++.|++...... .. +..+ +.+.+.||++..++
T Consensus 16 ~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~-~~--~~~~-~~~~~~~iPvV~~~ 90 (306)
T 2vk2_A 16 WRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFV-AQGVDAIFIAPVVAT-GW--EPVL-KEAKDAEIPVFLLD 90 (306)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHH-HHTCSEEEECCSSSS-SC--HHHH-HHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChh-hH--HHHH-HHHHHCCCCEEEec
Confidence 6666677788889999999988764 3332 344444 357898887532211 10 1123 33456899999886
Q ss_pred CC
Q psy9352 138 SH 139 (146)
Q Consensus 138 ~~ 139 (146)
..
T Consensus 91 ~~ 92 (306)
T 2vk2_A 91 RS 92 (306)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 461
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=22.65 E-value=2e+02 Score=20.10 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--Chhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG--KPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
.|..+-+..+++.+++.|..+.+... ++.. .+..+. ..+++.|+..... .... ...+. .+.+.|+++..+
T Consensus 15 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~-~~~~--~~~~~-~~~~~~iPvV~~ 89 (290)
T 2fn9_A 15 PWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAII-AAGYDAIIFNPTD-ADGS--IANVK-RAKEAGIPVFCV 89 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCSC-TTTT--HHHHH-HHHHTTCCEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecCC-hHHH--HHHHH-HHHHCCCeEEEE
Confidence 47777788888899999999988764 3432 344444 4588988875322 1111 11233 345689999888
Q ss_pred cC
Q psy9352 137 VS 138 (146)
Q Consensus 137 ~~ 138 (146)
+.
T Consensus 90 ~~ 91 (290)
T 2fn9_A 90 DR 91 (290)
T ss_dssp SS
T ss_pred ec
Confidence 65
No 462
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=22.61 E-value=1.4e+02 Score=22.52 Aligned_cols=38 Identities=0% Similarity=0.000 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCeEEEEECC-hhhHHHHHHHHcCccEE
Q psy9352 68 LADLDQKFRALGSRLYVVQGK-PEEVFPDIFKTWNIKLL 105 (146)
Q Consensus 68 L~~L~~~L~~~g~~L~v~~g~-~~~~l~~l~~~~~~~~v 105 (146)
|.+|.+.+++.|++.++.+.. +......++++.|+..+
T Consensus 242 l~~l~~~ik~~~v~~If~e~~~~~~~~~~iA~e~g~~v~ 280 (321)
T 1xvl_A 242 VQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQATGARFG 280 (321)
T ss_dssp HHHHHHHHHTTTCSEEEEETTSCSHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHcCCcEEEEeCCCChHHHHHHHHhcCCcee
Confidence 677888888999999888744 44667788888898875
No 463
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=22.58 E-value=1.8e+02 Score=20.46 Aligned_cols=30 Identities=7% Similarity=0.247 Sum_probs=21.6
Q ss_pred eEEEEECChhhHHHHHHHH---cCccEEEEeee
Q psy9352 81 RLYVVQGKPEEVFPDIFKT---WNIKLLTWEYD 110 (146)
Q Consensus 81 ~L~v~~g~~~~~l~~l~~~---~~~~~v~~~~~ 110 (146)
.+.++.|+..+.++.+..+ ..++.|+++..
T Consensus 113 ~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~ 145 (242)
T 3r3h_A 113 KIKLRLGPALDTLHSLLNEGGEHQFDFIFIDAD 145 (242)
T ss_dssp TEEEEESCHHHHHHHHHHHHCSSCEEEEEEESC
T ss_pred cEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCC
Confidence 5778888888877777553 45778887654
No 464
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=22.57 E-value=2.6e+02 Score=21.28 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEECC-hh------hHHHHHHHHcCccEEEEee-ecChhHHHHHHHHHHHHHhCCCeE
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGK-PE------EVFPDIFKTWNIKLLTWEY-DIEPYAKKRDGLVEDMAKEYKVKV 133 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~-~~------~~l~~l~~~~~~~~v~~~~-~~~~~~~~rd~~v~~~~~~~~i~~ 133 (146)
.++.+|.+.++++|.+..|+.+. .. +.+.+..++.+++.+.+.. +..|....-+ .+.+.+++.++.+
T Consensus 27 g~~~~l~~~l~~~g~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~-~~~~~~~~~~~d~ 101 (371)
T 1o2d_A 27 KILEKRGNIIDLLGKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVM-KAVERYRNDSFDF 101 (371)
T ss_dssp THHHHHGGGGGGTCSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHH-HHHHHHTTSCCSE
T ss_pred CHHHHHHHHHHHcCCEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHH-HHHHHHHhcCCCE
Confidence 34566666677777777776654 22 2333334455666555542 2233222323 4444455455443
No 465
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=22.55 E-value=1.2e+02 Score=20.41 Aligned_cols=35 Identities=17% Similarity=0.064 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHH
Q psy9352 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~ 99 (146)
+..|.++.+++.+.|+.++.+.-++.+.+.+++++
T Consensus 53 ~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~ 87 (198)
T 1zof_A 53 IIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNT 87 (198)
T ss_dssp HHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHh
Confidence 46688888888888888888887766666666655
No 466
>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A
Probab=22.45 E-value=1.5e+02 Score=20.02 Aligned_cols=64 Identities=11% Similarity=0.193 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHH------HHcC----ccEEEEeeecChhHHHHHHHHHHHHHhCCC
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIF------KTWN----IKLLTWEYDIEPYAKKRDGLVEDMAKEYKV 131 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~------~~~~----~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i 131 (146)
.++.++-+.|++. +++.++.+.+......+. +..+ ++.++...+.+..--.. ..+..++++.|+
T Consensus 115 ~~~~~~l~~l~~~-~~~~i~Sn~~~~~~~~~~~~l~~~~~~~l~~~fd~i~~~~~~~~~KP~~-~~~~~~~~~~g~ 188 (229)
T 4dcc_A 115 TYKLDLLLKLREK-YVVYLLSNTNDIHWKWVCKNAFPYRTFKVEDYFEKTYLSYEMKMAKPEP-EIFKAVTEDAGI 188 (229)
T ss_dssp HHHHHHHHHHTTT-SEEEEEECCCHHHHHHHHHHTSCBTTBCHHHHCSEEEEHHHHTCCTTCH-HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc-CcEEEEECCChHHHHHHHhhhhhhccCCHHHhCCEEEeecccCCCCCCH-HHHHHHHHHcCC
Confidence 4566666777777 999999887776665444 4444 36676665543211111 245555665565
No 467
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=22.35 E-value=2.4e+02 Score=20.78 Aligned_cols=58 Identities=9% Similarity=0.084 Sum_probs=35.6
Q ss_pred HhcCCeEEEEECChhhHHHH--HHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 76 RALGSRLYVVQGKPEEVFPD--IFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 76 ~~~g~~L~v~~g~~~~~l~~--l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
+.-.++++++...+..-.+- .+-+.| .+|++++.......+-+ .+.+++++.|+.+..
T Consensus 69 ~~~~vD~V~I~tP~~~H~~~~~~al~aG-khVl~EKPla~~~~ea~-~l~~~a~~~g~~~~v 128 (312)
T 3o9z_A 69 RGEGVDYLSIASPNHLHYPQIRMALRLG-ANALSEKPLVLWPEEIA-RLKELEARTGRRVYT 128 (312)
T ss_dssp TTCCCSEEEECSCGGGHHHHHHHHHHTT-CEEEECSSSCSCHHHHH-HHHHHHHHHCCCEEE
T ss_pred cCCCCcEEEECCCchhhHHHHHHHHHCC-CeEEEECCCCCCHHHHH-HHHHHHHHcCCEEEE
Confidence 45678888877655433221 122223 78999988766544444 677777778876643
No 468
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=22.32 E-value=86 Score=23.13 Aligned_cols=41 Identities=2% Similarity=-0.052 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCeEEEEECCh----hhHHHHHHHHcCccEEEE
Q psy9352 67 SLADLDQKFRALGSRLYVVQGKP----EEVFPDIFKTWNIKLLTW 107 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~v~~g~~----~~~l~~l~~~~~~~~v~~ 107 (146)
.|.+|.+.+++.|++.++.+... .+.|.+++++.|+..+..
T Consensus 200 ~l~~l~~~ik~~~v~~if~e~~~~~~~~~~l~~~a~~~g~~v~~l 244 (282)
T 3mfq_A 200 DMIETVNLIIDHNIKAIFTESTTNPERMKKLQEAVKAKGGQVEVV 244 (282)
T ss_dssp HHHHHHHHHHHHTCCEEECBTTSCTHHHHHHHHHHHTTSCCCEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHhcCCceEEe
Confidence 37788888899999988876432 345555677888877765
No 469
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=22.22 E-value=1.9e+02 Score=20.13 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEEEee
Q psy9352 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEY 109 (146)
Q Consensus 69 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~~~~ 109 (146)
.++-+.+++.|..+++..-+..+.+.++. +.|++.|+++.
T Consensus 176 ~~~v~~~~~~G~~v~~wtvn~~~~~~~l~-~~GvdgI~TD~ 215 (224)
T 1vd6_A 176 EEAVAGWRKRGLFVVAWTVNEEGEARRLL-ALGLDGLIGDR 215 (224)
T ss_dssp HHHHHHHHHTTCEEEEECCCCHHHHHHHH-HTTCSEEEESC
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHH-hcCCCEEEcCC
Confidence 34555666778877777655555555554 46788777753
No 470
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=22.18 E-value=2.2e+02 Score=20.45 Aligned_cols=59 Identities=19% Similarity=0.068 Sum_probs=39.6
Q ss_pred HHHHHHhcCCeEEEE-ECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCC
Q psy9352 71 LDQKFRALGSRLYVV-QGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYK 130 (146)
Q Consensus 71 L~~~L~~~g~~L~v~-~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~ 130 (146)
+..-|+..|.+.+.+ ...|.+.+.+.+.+.+++.|..+.-.++....-. .+.+.+++.|
T Consensus 143 va~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~-~~i~~l~~~~ 202 (258)
T 2i2x_B 143 VTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFK-EVNDMLLENG 202 (258)
T ss_dssp HHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHH-HHHHHHHTTT
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHH-HHHHHHHhcC
Confidence 344577789887544 4567788888999999999998776554333322 4555566655
No 471
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural GE oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1
Probab=22.15 E-value=44 Score=25.18 Aligned_cols=44 Identities=5% Similarity=0.015 Sum_probs=26.7
Q ss_pred HHHHHHcCcc-EEEEeeecChhHHHHHHHHHHHHHhCCCeEEEec
Q psy9352 94 PDIFKTWNIK-LLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 94 ~~l~~~~~~~-~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.++++..+.. -++..-+|.+..+..+..+...|++.||.+..+.
T Consensus 190 ~~~~~~~~~~~~~~~Q~~~~l~~~~~~~~l~~~~~~~gi~v~a~s 234 (346)
T 1lqa_A 190 LHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYS 234 (346)
T ss_dssp HHHHHHHTCCCCCEEEEECBTTBCTHHHHHHHHHHHHCCEEEEEC
T ss_pred HHHHHHcCCCCceEEeccCChhhchhHHHHHHHHHHcCCeEEEec
Confidence 3444444432 2333445666555444578889999999988763
No 472
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=22.11 E-value=98 Score=20.50 Aligned_cols=31 Identities=6% Similarity=0.053 Sum_probs=22.3
Q ss_pred HHHhcCCeEEEEECCh---hhHHHHHHHHcCccE
Q psy9352 74 KFRALGSRLYVVQGKP---EEVFPDIFKTWNIKL 104 (146)
Q Consensus 74 ~L~~~g~~L~v~~g~~---~~~l~~l~~~~~~~~ 104 (146)
.|++.|+.+.+..|.+ ...+..++++.++..
T Consensus 35 ~l~~~G~~iii~TgR~~~~~~~~~~~l~~~gi~~ 68 (142)
T 2obb_A 35 LLQQEKHRLILWSVREGELLDEAIEWCRARGLEF 68 (142)
T ss_dssp HHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHCCCEEEEEeCCCcccHHHHHHHHHHcCCCe
Confidence 4456799999999986 445566677777754
No 473
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=22.08 E-value=2.5e+02 Score=20.86 Aligned_cols=63 Identities=8% Similarity=-0.048 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCeEEEEECChhh---HHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEE---VFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~---~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
++++-|+.-.++++++...+.. ...+.+ +.| .+|++++..+....+-+ .+.+++++.|+.+..
T Consensus 73 ~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al-~aG-khVl~EKPla~~~~ea~-~l~~~a~~~g~~~~v 138 (340)
T 1zh8_A 73 SYEELLESGLVDAVDLTLPVELNLPFIEKAL-RKG-VHVICEKPISTDVETGK-KVVELSEKSEKTVYI 138 (340)
T ss_dssp CHHHHHHSSCCSEEEECCCGGGHHHHHHHHH-HTT-CEEEEESSSSSSHHHHH-HHHHHHHHCSSCEEE
T ss_pred CHHHHhcCCCCCEEEEeCCchHHHHHHHHHH-HCC-CcEEEeCCCCCCHHHHH-HHHHHHHHcCCeEEE
Confidence 4555566667788777654432 222222 223 58888887655443433 566677777776543
No 474
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=22.01 E-value=2.4e+02 Score=20.86 Aligned_cols=63 Identities=10% Similarity=-0.030 Sum_probs=36.5
Q ss_pred HHHHHHHh-cCCeEEEEECChhhHHHHH--HHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEE
Q psy9352 70 DLDQKFRA-LGSRLYVVQGKPEEVFPDI--FKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVE 134 (146)
Q Consensus 70 ~L~~~L~~-~g~~L~v~~g~~~~~l~~l--~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~ 134 (146)
++++-|+. -.++.+++...+..-.+-. +-+.| .+|++++..+....+-+ .+.+++++.|+.+.
T Consensus 71 ~~~~ll~~~~~vD~V~i~tp~~~H~~~~~~al~aG-khVl~EKP~a~~~~e~~-~l~~~a~~~g~~~~ 136 (330)
T 4ew6_A 71 TIEAMLDAEPSIDAVSLCMPPQYRYEAAYKALVAG-KHVFLEKPPGATLSEVA-DLEALANKQGASLF 136 (330)
T ss_dssp SHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTT-CEEEECSSSCSSHHHHH-HHHHHHHHHTCCEE
T ss_pred CHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHcC-CcEEEeCCCCCCHHHHH-HHHHHHHhcCCeEE
Confidence 34444555 5788877766554332221 12233 78999887655433433 67777777887664
No 475
>1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP: c.1.7.1 PDB: 1a80_A* 1m9h_A*
Probab=21.93 E-value=2.3e+02 Score=20.52 Aligned_cols=16 Identities=31% Similarity=0.354 Sum_probs=11.4
Q ss_pred HHHHHHHhCCCeEEEe
Q psy9352 121 LVEDMAKEYKVKVEQH 136 (146)
Q Consensus 121 ~v~~~~~~~~i~~~~~ 136 (146)
.+...|++.||.+..+
T Consensus 172 ~l~~~~~~~gi~v~a~ 187 (278)
T 1hw6_A 172 EITDWAAAHDVKIESW 187 (278)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCEEEEe
Confidence 5667777778777665
No 476
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=21.88 E-value=97 Score=22.43 Aligned_cols=45 Identities=7% Similarity=0.051 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEECCh---hhHHHHHHHHcCcc-----EEEEeee
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKP---EEVFPDIFKTWNIK-----LLTWEYD 110 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~---~~~l~~l~~~~~~~-----~v~~~~~ 110 (146)
.+..++=+.|++.|+++.|..|.+ ...+....+..++. .+++..+
T Consensus 104 pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~~~~L~~~Gl~~v~~~~vi~~~~ 156 (258)
T 2i33_A 104 PGSIDFLKYTESKGVDIYYISNRKTNQLDATIKNLERVGAPQATKEHILLQDP 156 (258)
T ss_dssp TTHHHHHHHHHHTTCEEEEEEEEEGGGHHHHHHHHHHHTCSSCSTTTEEEECT
T ss_pred ccHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHHHHcCCCcCCCceEEECCC
Confidence 355666777888999999999877 33444455555554 4555443
No 477
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=21.84 E-value=1.5e+02 Score=18.21 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEECC-hhhHHHHHHHHcCcc
Q psy9352 64 LQQSLADLDQKFRALGSRLYVVQGK-PEEVFPDIFKTWNIK 103 (146)
Q Consensus 64 l~~sL~~L~~~L~~~g~~L~v~~g~-~~~~l~~l~~~~~~~ 103 (146)
....|.++.+++...|+.++.+.-+ ..+.+.+++++.++.
T Consensus 49 ~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~ 89 (148)
T 3hcz_A 49 ETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIG 89 (148)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCC
Confidence 3467888899998888888777644 556788888888775
No 478
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=21.80 E-value=1.9e+02 Score=19.47 Aligned_cols=45 Identities=7% Similarity=0.027 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhc---CCeEEEEECC----hhhHHHHHHHHcCccEEEE
Q psy9352 63 FLQQSLADLDQKFRAL---GSRLYVVQGK----PEEVFPDIFKTWNIKLLTW 107 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~---g~~L~v~~g~----~~~~l~~l~~~~~~~~v~~ 107 (146)
-.+..|.++.+++.+. ++.++.+.-+ ..+.+.+++++++.+-...
T Consensus 59 ~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l 110 (200)
T 2b7k_A 59 DELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGL 110 (200)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEE
T ss_pred HHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEE
Confidence 3456788888888754 7777777755 4577889999888764444
No 479
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=21.80 E-value=1.4e+02 Score=18.01 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHcCccEEE
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLT 106 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~v~ 106 (146)
..|..+.+.+++.|..+.+..-++ .+.++.+..+.+.++
T Consensus 61 ~~L~~~~~~~~~~g~~l~l~~~~~--~v~~~l~~~gl~~~~ 99 (117)
T 1h4x_A 61 GLVLGRMRELEAVAGRTILLNPSP--TMRKVFQFSGLGPWM 99 (117)
T ss_dssp HHHHHHHHHHHTTTCEEEEESCCH--HHHHHHHHTTCGGGE
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHhCCceEE
Confidence 557778888888999998764333 457788888877766
No 480
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=21.79 E-value=2.5e+02 Score=21.06 Aligned_cols=63 Identities=13% Similarity=0.034 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCeEEEEECChhhHHHHHH--HHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEE
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEEVFPDIF--KTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVE 134 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~--~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~ 134 (146)
++++-|+.-+++++++...+..-..-.. -+.| .+|++++..+....+-+ .+.+++++.|+.+.
T Consensus 59 ~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aG-khVl~EKPla~~~~e~~-~l~~~a~~~g~~~~ 123 (359)
T 3m2t_A 59 NVPAMLNQVPLDAVVMAGPPQLHFEMGLLAMSKG-VNVFVEKPPCATLEELE-TLIDAARRSDVVSG 123 (359)
T ss_dssp SHHHHHHHSCCSEEEECSCHHHHHHHHHHHHHTT-CEEEECSCSCSSHHHHH-HHHHHHHHHTCCEE
T ss_pred CHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCC-CeEEEECCCcCCHHHHH-HHHHHHHHcCCEEE
Confidence 4444455566777777655443222111 1122 57888877654433333 56666777776553
No 481
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=21.78 E-value=1.5e+02 Score=18.42 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECCh--hhHHHHHHHHcCccE
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQGKP--EEVFPDIFKTWNIKL 104 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g~~--~~~l~~l~~~~~~~~ 104 (146)
-....|.++.+++.+.++.++.+.-+. .+.+.+++++++++-
T Consensus 45 ~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~ 88 (154)
T 3kcm_A 45 EEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTL 88 (154)
T ss_dssp HHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCe
Confidence 355678888888888788887776544 667788888777653
No 482
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=21.73 E-value=1.4e+02 Score=20.75 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCC-eEEEEECChhhHHHHHHHHcCccEEEEe
Q psy9352 67 SLADLDQKFRALGS-RLYVVQGKPEEVFPDIFKTWNIKLLTWE 108 (146)
Q Consensus 67 sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~~v~~~ 108 (146)
++...++..++.|. .+.++.++..+.++.......++.|+++
T Consensus 70 ~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 70 GVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp HHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 34445555556665 4888899998877766655678888887
No 483
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=21.69 E-value=1.7e+02 Score=21.98 Aligned_cols=64 Identities=13% Similarity=0.032 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCeEEEEECChhhHHHHH--HHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEEVFPDI--FKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~~l~~l--~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
++++-|+.-+++++++...+..-.+.. +-+.| .+|++++..+....+-+ .+.+++++.|+.+..
T Consensus 56 ~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aG-khVl~EKP~a~~~~ea~-~l~~~a~~~g~~~~v 121 (362)
T 3fhl_A 56 SFKELTEDPEIDLIVVNTPDNTHYEYAGMALEAG-KNVVVEKPFTSTTKQGE-ELIALAKKKGLMLSV 121 (362)
T ss_dssp CSHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEEESSCCSSHHHHH-HHHHHHHHHTCCEEE
T ss_pred CHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHCC-CeEEEecCCCCCHHHHH-HHHHHHHHcCCEEEE
Confidence 344445555677777665443322111 11223 57778777654433333 566666666765543
No 484
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=21.54 E-value=1.5e+02 Score=18.24 Aligned_cols=47 Identities=11% Similarity=0.097 Sum_probs=30.7
Q ss_pred EEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 84 VVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 84 v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
+..|.- ++ .+-+++-.+.-|+...+.+|.. +. .+...|+..+|+++.
T Consensus 23 lv~G~~-~v-~kai~~gkaklViiA~D~~~~~--~~-~i~~~c~~~~ip~~~ 69 (104)
T 4a18_G 23 ATLGYK-ST-IKAIRNGTAKLVFISNNCPTVR--KS-EIEYYASLAQISIHH 69 (104)
T ss_dssp EEESHH-HH-HHHHHHTCCCEEEECTTSCHHH--HH-HHHHHHHHHTCEEEE
T ss_pred EeECHH-HH-HHHHHcCCceEEEEeCCCCHHH--HH-HHHHHHHHcCCcEEE
Confidence 445533 23 3444556788888888887653 22 567777778898885
No 485
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A*
Probab=21.46 E-value=1.6e+02 Score=21.66 Aligned_cols=27 Identities=7% Similarity=0.044 Sum_probs=15.6
Q ss_pred ecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 110 DIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 110 ~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
+|.+..++.+..+...|++.||.+..+
T Consensus 177 ~~~~~~~~~e~~l~~~~~~~gi~v~a~ 203 (312)
T 1pyf_A 177 EYNLLNREAEKTFFPYTKEHNISFIPY 203 (312)
T ss_dssp ECBTTBCGGGTTHHHHHHHHTCEEEEE
T ss_pred cCCccccchHHHHHHHHHHcCCeEEEe
Confidence 344433333334667777778777765
No 486
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=21.40 E-value=2.5e+02 Score=22.21 Aligned_cols=63 Identities=13% Similarity=0.156 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCeEEEEECChhhH---HHHHHHHcCc-----cEEEEeeecChhHHHHHHHHHHHHHhCC-CeEE
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEEV---FPDIFKTWNI-----KLLTWEYDIEPYAKKRDGLVEDMAKEYK-VKVE 134 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~~---l~~l~~~~~~-----~~v~~~~~~~~~~~~rd~~v~~~~~~~~-i~~~ 134 (146)
++++-|+.-.++++++.-.+..- +...+ +.|+ .+|++++..+....+-+ .+.+++++.| +.+.
T Consensus 99 d~~ell~~~~vD~V~I~tp~~~H~~~~~~al-~aG~~~~~~khVl~EKPla~~~~ea~-~l~~~a~~~g~~~~~ 170 (479)
T 2nvw_A 99 SLESFAQYKDIDMIVVSVKVPEHYEVVKNIL-EHSSQNLNLRYLYVEWALAASVQQAE-ELYSISQQRANLQTI 170 (479)
T ss_dssp CHHHHHHCTTCSEEEECSCHHHHHHHHHHHH-HHSSSCSSCCEEEEESSSSSSHHHHH-HHHHHHHTCTTCEEE
T ss_pred CHHHHhcCCCCCEEEEcCCcHHHHHHHHHHH-HCCCCcCCceeEEEeCCCcCCHHHHH-HHHHHHHHcCCeEEE
Confidence 34444555567777776554432 22222 2342 67888876554333333 5667777777 6553
No 487
>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*
Probab=21.38 E-value=2.2e+02 Score=21.88 Aligned_cols=69 Identities=9% Similarity=0.118 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECC--hhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 65 QQSLADLDQKFRALGSRLYVVQGK--PEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 65 ~~sL~~L~~~L~~~g~~L~v~~g~--~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
.+.+..|++.|.++|.++-|.-++ ....+.+++++-.++.|-..-.. . +...-.++.+.+++.|+.+..
T Consensus 240 ~~~~~~l~~~l~~~g~~iPIa~dE~~~~~~~~~~i~~~~~d~v~ik~~~-~-Git~~~~i~~~A~~~gi~~~~ 310 (392)
T 3p3b_A 240 EALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRGRVDVLQYDIIW-P-GFTHWMELGEKLDAHGLRSAP 310 (392)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEECCSSCCTTHHHHHHTTSCCEECCBTTT-B-CHHHHHHHHHHHHHTTCEECC
T ss_pred HHHHHHHHHhhccCCCCccEEecCCCCHHHHHHHHHcCCCCEEEeCccc-c-CHHHHHHHHHHHHHcCCEEEe
Confidence 356777777777666555555554 22456777776556665553222 1 444445788888888887654
No 488
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=21.38 E-value=2.2e+02 Score=20.12 Aligned_cols=57 Identities=9% Similarity=-0.013 Sum_probs=42.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHhcCCeEEEEEC--------ChhhHHHHHHHHcCccEEEEeeecCh
Q psy9352 57 GPNRWRFLQQSLADLDQKFRALGSRLYVVQG--------KPEEVFPDIFKTWNIKLLTWEYDIEP 113 (146)
Q Consensus 57 ~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g--------~~~~~l~~l~~~~~~~~v~~~~~~~~ 113 (146)
....+..+.++|..+....++.|+.|.+-.- ...+.+.+++++.+-..|.+.-|.+.
T Consensus 137 ~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~~~~ll~~v~~~~vg~~~D~~h 201 (287)
T 3kws_A 137 TMETRDFLCEQFNEMGTFAAQHGTSVIFEPLNRKECFYLRQVADAASLCRDINNPGVRCMGDFWH 201 (287)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTTCSSCCCHHHHHHHHHHHCCTTEEEEEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCcccCcccCCHHHHHHHHHHcCCCCeeEEeehHH
Confidence 3445667889999999999999999887632 23456778899877677777767654
No 489
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=21.38 E-value=1.5e+02 Score=19.39 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEECCh--hhHHHHHHHHcCcc
Q psy9352 63 FLQQSLADLDQKFRALGSRLYVVQGKP--EEVFPDIFKTWNIK 103 (146)
Q Consensus 63 Fl~~sL~~L~~~L~~~g~~L~v~~g~~--~~~l~~l~~~~~~~ 103 (146)
-....|.++.+++.+.|+.++.+..+. .+.+.+++++++++
T Consensus 77 ~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~ 119 (186)
T 1jfu_A 77 KEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLT 119 (186)
T ss_dssp HHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 355678888888887788887777553 36778899988873
No 490
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=21.24 E-value=1.6e+02 Score=18.25 Aligned_cols=48 Identities=19% Similarity=0.063 Sum_probs=30.0
Q ss_pred EEECChhhHHHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEEe
Q psy9352 84 VVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQH 136 (146)
Q Consensus 84 v~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~~ 136 (146)
+..|.- +++ +-+++-.+.-|+...+..+... +.+...|...+|+++.|
T Consensus 23 ~v~G~~-~v~-kai~~gkaklVilA~D~~~~~~---~~i~~~c~~~~ip~~~~ 70 (105)
T 3u5e_c 23 YTLGYK-STV-KSLRQGKSKLIIIAANTPVLRK---SELEYYAMLSKTKVYYF 70 (105)
T ss_dssp EEESHH-HHH-HHHHTTCCSEEEECTTSCHHHH---HHHHHHHHHHTCEEEEC
T ss_pred eeECHH-HHH-HHHHcCCceEEEEeCCCCHHHH---HHHHHHHHHcCCCEEEe
Confidence 445533 333 3445557888888877765422 36777777788888853
No 491
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=21.17 E-value=2.1e+02 Score=21.26 Aligned_cols=63 Identities=13% Similarity=0.022 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCeEEEEECChhhH---HHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEEV---FPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~~---l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
++++-|+.-+++++++...+..- ..+.+ +.| .+|++++.......+-+ .+.+++++.|+.+..
T Consensus 56 ~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al-~aG-k~Vl~EKP~a~~~~e~~-~l~~~a~~~g~~~~v 121 (349)
T 3i23_A 56 DLNELLTDPEIELITICTPAHTHYDLAKQAI-LAG-KSVIVEKPFCDTLEHAE-ELFALGQEKGVVVMP 121 (349)
T ss_dssp CTHHHHSCTTCCEEEECSCGGGHHHHHHHHH-HTT-CEEEECSCSCSSHHHHH-HHHHHHHHTTCCEEE
T ss_pred CHHHHhcCCCCCEEEEeCCcHHHHHHHHHHH-HcC-CEEEEECCCcCCHHHHH-HHHHHHHHcCCeEEE
Confidence 34444555567776665444322 22222 223 57777776554333333 566666777776643
No 492
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=21.15 E-value=1e+02 Score=18.42 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHH
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKT 99 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~ 99 (146)
-.+.+|++.|+++|.+ ..|.-.+.+.+|.+.
T Consensus 29 lkVaeLK~eLk~RGL~---~sG~KaeLIeRL~~~ 59 (75)
T 2kvu_A 29 MKVAELKQELKLRSLP---VSGTKTELIERLRAY 59 (75)
T ss_dssp SCHHHHHHHHHHTTCC---CCSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCC---CCCCHHHHHHHHHHH
Confidence 4589999999999966 457766776666543
No 493
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=21.12 E-value=2.2e+02 Score=19.90 Aligned_cols=55 Identities=9% Similarity=0.006 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCeEEEEEC-------------ChhhHHHHHHHHcCccEEEEeeecCh
Q psy9352 59 NRWRFLQQSLADLDQKFRALGSRLYVVQG-------------KPEEVFPDIFKTWNIKLLTWEYDIEP 113 (146)
Q Consensus 59 ~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g-------------~~~~~l~~l~~~~~~~~v~~~~~~~~ 113 (146)
..+..+.++|..+.+..++.|+.+.+-.- ...+.+.++++..+-..|.+.-|...
T Consensus 115 ~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~vg~~~D~~h 182 (281)
T 3u0h_A 115 RYISQLARRIRQVAVELLPLGMRVGLEYVGPHHLRHRRYPFVQSLADLKTFWEAIGAPNVGALVDSYH 182 (281)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCEEEEECCCCGGGCCSSEECCCSHHHHHHHHHHHCCTTEEEEEEHHH
T ss_pred hhHHHHHHHHHHHHHHHHHcCCEEEEEeccccccccccccccCCHHHHHHHHHHcCCCCeeEEeehhH
Confidence 35567889999999999999999887642 23455678888877667777767653
No 494
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=21.11 E-value=1.6e+02 Score=18.96 Aligned_cols=13 Identities=8% Similarity=0.044 Sum_probs=8.5
Q ss_pred hHHHHHHHHcCcc
Q psy9352 91 EVFPDIFKTWNIK 103 (146)
Q Consensus 91 ~~l~~l~~~~~~~ 103 (146)
....+|.+..+|.
T Consensus 20 ~~aK~lL~~kgV~ 32 (121)
T 1u6t_A 20 QDVLGFLEANKIG 32 (121)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCc
Confidence 3556677777775
No 495
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=21.05 E-value=48 Score=21.49 Aligned_cols=20 Identities=25% Similarity=0.687 Sum_probs=16.0
Q ss_pred CCCceEEEEecCCCCCcCcH
Q psy9352 3 GTPECAVHWIRKGMRLHDNP 22 (146)
Q Consensus 3 ~~~~~~l~Wfr~DLRl~DN~ 22 (146)
|.++..|.||+++..|..++
T Consensus 26 G~P~P~I~W~knG~~l~~~~ 45 (126)
T 1he7_A 26 GQPAPSLRWLFNGSVLNETS 45 (126)
T ss_dssp CSSCCEEEEEETTEECCCCS
T ss_pred eeCCCeEEEEECCEECCCCC
Confidence 56778899999998887653
No 496
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=21.03 E-value=2.4e+02 Score=20.43 Aligned_cols=70 Identities=10% Similarity=0.040 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEC--ChhhH---HHHHHHHcCccEEEEeeecChhHHHHHHHHHHHHHh-CCCeEEE
Q psy9352 62 RFLQQSLADLDQKFRALGSRLYVVQG--KPEEV---FPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE-YKVKVEQ 135 (146)
Q Consensus 62 ~Fl~~sL~~L~~~L~~~g~~L~v~~g--~~~~~---l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~~~~-~~i~~~~ 135 (146)
.|+.+-+..+++.+++.|..+.+... ++... +..+. ..+++.|++....... ...+.+++ .|+++..
T Consensus 71 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~------~~~~~l~~~~~iPvV~ 143 (340)
T 1qpz_A 71 AYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMA-QKRVDGLLVMCSEYPE------PLLAMLEEYRHIPMVV 143 (340)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCSCCCH------HHHHHHHTTTTSCEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHH-cCCCCEEEEeCCCCCh------HHHHHHHhhCCCCEEE
Confidence 36777788888999999999988763 33322 33333 4689988874322211 12233333 6899888
Q ss_pred ecC
Q psy9352 136 HVS 138 (146)
Q Consensus 136 ~~~ 138 (146)
++.
T Consensus 144 ~~~ 146 (340)
T 1qpz_A 144 MDW 146 (340)
T ss_dssp EEE
T ss_pred Eec
Confidence 764
No 497
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=21.02 E-value=1.2e+02 Score=23.45 Aligned_cols=63 Identities=11% Similarity=0.020 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEECChhhHHHHHHHHc-------CccEEEEee---ecChhHHHHHHHHHHHHHhCCCeEEE
Q psy9352 66 QSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTW-------NIKLLTWEY---DIEPYAKKRDGLVEDMAKEYKVKVEQ 135 (146)
Q Consensus 66 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~-------~~~~v~~~~---~~~~~~~~rd~~v~~~~~~~~i~~~~ 135 (146)
|+-+-...+|.+.||+..++..... ..++++- |++.|+.|- -.+.+ .+.-+++..||+|+.
T Consensus 193 qG~rlta~eL~~~GI~vtlI~Dsa~---~~~M~~~~Vd~VivGAd~V~aNGv~NKiGT~------~lAl~Ak~~~vPfyV 263 (351)
T 1t5o_A 193 QGSRLTCWELMEDGIDVTLITDSMV---GIVMQKGMVDKVIVGADRIVRDAVFNKIGTY------TVSVVAKHHNIPFYV 263 (351)
T ss_dssp HHHHTHHHHHHHTTCCEEEECGGGH---HHHHHTTCCSEEEECCSEEETTEEEEETTHH------HHHHHHHHTTCCEEE
T ss_pred ccHHHHHHHHHhCCCCEEEEehhHH---HHHhhcCCCCEEEECccchhhcCcccccCHH------HHHHHHHHcCCCEEE
Confidence 3444456778889999998876554 3455553 444444333 12322 466667889999998
Q ss_pred ec
Q psy9352 136 HV 137 (146)
Q Consensus 136 ~~ 137 (146)
.-
T Consensus 264 ~a 265 (351)
T 1t5o_A 264 AA 265 (351)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 498
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=20.94 E-value=2.4e+02 Score=20.21 Aligned_cols=69 Identities=12% Similarity=-0.091 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCeEE-EEECChhhHHHHHHHHcCccEEEEeeecC-hhHH-----HHHHHHHHHHHhCCCeEEEec
Q psy9352 67 SLADLDQKFRALGSRLY-VVQGKPEEVFPDIFKTWNIKLLTWEYDIE-PYAK-----KRDGLVEDMAKEYKVKVEQHV 137 (146)
Q Consensus 67 sL~~L~~~L~~~g~~L~-v~~g~~~~~l~~l~~~~~~~~v~~~~~~~-~~~~-----~rd~~v~~~~~~~~i~~~~~~ 137 (146)
.+.++.++++. |.++. +++|--.. ...++++.+++.-+.+.+.. -... .-...+.+.+.+.|++.....
T Consensus 28 ~l~~l~~~i~~-G~~vv~lVhGGG~~-~~~~~~~~gi~~~~~~~d~~gl~~t~~~~~~ln~~~v~~l~~~G~~a~~l~ 103 (249)
T 3ll5_A 28 AIRSIVKVLSG-IEDLVCVVHGGGSF-GHIKAMEFGLPGPKNPRSSIGYSIVHRDMENLDLMVIDAMIEMGMRPISVP 103 (249)
T ss_dssp HHHHHHHHHHT-CTTEEEEEECCGGG-THHHHHHHTCSEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred HHHHHHHHHhc-CCceEEEEECccHH-HHHHHHHhCCCcCCCccccccHHHHHHHHHHHHHHHHHHHHHCCCcEEEEc
Confidence 34555555555 99998 88876332 45677888887766421111 1111 112334466777888776653
No 499
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=20.94 E-value=2.6e+02 Score=20.79 Aligned_cols=64 Identities=11% Similarity=-0.028 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCeEEEEECChhhHHHHHHHHcC-ccEEEEeeecChhHHHHHHHHHHHHHhCCCeEE
Q psy9352 70 DLDQKFRALGSRLYVVQGKPEEVFPDIFKTWN-IKLLTWEYDIEPYAKKRDGLVEDMAKEYKVKVE 134 (146)
Q Consensus 70 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~-~~~v~~~~~~~~~~~~rd~~v~~~~~~~~i~~~ 134 (146)
++++-|+.-+++++++.-.+....+-..+-.. =.+|++++..+....+-+ .+.+++++.|+.+.
T Consensus 62 ~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~-~l~~~a~~~g~~~~ 126 (362)
T 1ydw_A 62 SYESLLEDPEIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFD-KIVDACEANGVQIM 126 (362)
T ss_dssp SHHHHHHCTTCCEEEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHH-HHHHHHHTTTCCEE
T ss_pred CHHHHhcCCCCCEEEEcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHH-HHHHHHHHcCCEEE
Confidence 45555665678888876554432222211111 258999886654433433 67788888888764
No 500
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=20.94 E-value=2.4e+02 Score=20.39 Aligned_cols=58 Identities=14% Similarity=0.187 Sum_probs=39.3
Q ss_pred EEEEECCCccCCCCCChhhHHHHHHHHHHHHHHHHhcCCeEEEEECChhh--HHHHHHHHcCc
Q psy9352 42 PLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEE--VFPDIFKTWNI 102 (146)
Q Consensus 42 ~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~--~l~~l~~~~~~ 102 (146)
.+|+-|.... ++|......+.+.+.+.-+.|.+.|.+.+++.-+... .+..+-+..++
T Consensus 40 ~iy~~D~~~~---Pyg~~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~i 99 (273)
T 2oho_A 40 IVYIGDSARA---PYGPRPKKQIKEYTWELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDI 99 (273)
T ss_dssp EEEEECGGGC---CCTTSCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSS
T ss_pred EEEEeCCCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchHhHHHHHHHHHhCCC
Confidence 5777787533 3455555667777777777788899999998766654 25666555544
Done!