RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9352
(146 letters)
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET:
TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A*
2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Length = 543
Score = 170 bits (433), Expect = 1e-51
Identities = 76/143 (53%), Positives = 97/143 (67%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR 60
M VHW RKG+RLHDNPAL N ++P++ILDP +M+VG NR
Sbjct: 24 MDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANR 83
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
WRFLQQ+L DLD + R L SRL+VV+GKP EVFP IFK+W +++LT+E DIEPY+ RD
Sbjct: 84 WRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDA 143
Query: 121 LVEDMAKEYKVKVEQHVSHTLYN 143
V+ +AK V+VE H SHT+YN
Sbjct: 144 AVQKLAKAEGVRVETHCSHTIYN 166
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A
{Arabidopsis thaliana}
Length = 537
Score = 157 bits (398), Expect = 1e-46
Identities = 59/149 (39%), Positives = 84/149 (56%), Gaps = 15/149 (10%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRK---------FM 54
T ++ W RKG+R+HDNPAL A + + + P++++DPH+ +
Sbjct: 3 TGSGSLIWFRKGLRVHDNPALEYAS----KGSEFMY--PVFVIDPHYMESDPSAFSPGSS 56
Query: 55 RVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPY 114
R G NR RFL +SL DLD + LGSRL V +G+P EV + W +K L +EYD +PY
Sbjct: 57 RAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPY 116
Query: 115 AKKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
+ D V+D A V+V VSHTL+N
Sbjct: 117 YQALDVKVKDYASSTGVEVFSPVSHTLFN 145
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag,
phosphorylation, gene regulation, signaling protein;
HET: TPO FAD; 2.30A {Drosophila melanogaster}
Length = 538
Score = 156 bits (397), Expect = 2e-46
Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 4 TPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRF 63
T V W R G+RLHDNPALL+A+ K++ L P++I D VG NR RF
Sbjct: 2 TRGANVIWFRHGLRLHDNPALLAALADKDQGIA---LIPVFIFDGESAGTKNVGYNRMRF 58
Query: 64 LQQSLADLDQKFRALGS---RLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDG 120
L SL D+D + +A RL V +G+P +F + + + + E D EP +RD
Sbjct: 59 LLDSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDE 118
Query: 121 LVEDMAKEYKVKVEQHVSHTLYN 143
+ + +E + + VSHTL++
Sbjct: 119 SIRSLCRELNIDFVEKVSHTLWD 141
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A
{Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Length = 489
Score = 145 bits (369), Expect = 1e-42
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 11/147 (7%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-----HFRKFMR 55
M P + W R +RLHD+ L A+ + G I +Y DP + F +
Sbjct: 1 MKHVPPTVLVWFRNDLRLHDHEPLHRAL----KSGLAIT--AVYCYDPRQFAQTHQGFAK 54
Query: 56 VGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYA 115
GP R FLQQS+ +L + + +G++L V G PE+V P I K N K + + ++
Sbjct: 55 TGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEE 114
Query: 116 KKRDGLVEDMAKEYKVKVEQHVSHTLY 142
+ + ++ + + TL
Sbjct: 115 LDVERNLVKQLTILGIEAKGYWGSTLC 141
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein,
flavoprotein, FAD, mitochondrion, plastid, chromophore,
chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana}
PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Length = 525
Score = 145 bits (367), Expect = 5e-42
Identities = 41/143 (28%), Positives = 58/143 (40%), Gaps = 14/143 (9%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP------HFRKFMRVGPNRW 61
+ W R +R+ DN AL A IL P+Y LDP HF F + G R
Sbjct: 42 TILWFRNDLRVLDNDALYKAW----SSSDTIL--PVYCLDPRLFHTTHFFNFPKTGALRG 95
Query: 62 RFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGL 121
FL + L DL + G L + GKPEE+ P + K + + + + + L
Sbjct: 96 GFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERL 155
Query: 122 VEDMAKE--YKVKVEQHVSHTLY 142
V K K+E T+Y
Sbjct: 156 VNQGLKRVGNSTKLELIWGSTMY 178
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin
enzyme, photoreactivating enzyme; HET: FAD; 1.80A
{Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB:
1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Length = 484
Score = 111 bits (280), Expect = 6e-30
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+ W R+ +RL DN L +A + ++ L+ LDP + + P R +LQ
Sbjct: 5 ILFWHRRDLRLSDNIGLAAAR----AQSAQLI--GLFCLDPQILQSADMAPARVAYLQGC 58
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAK 127
L +L Q+++ GSRL ++QG P+ + P + + + + W DIEPY + RDG V K
Sbjct: 59 LQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALK 118
Query: 128 EYKVKVEQHVSHTLY 142
++ Q L+
Sbjct: 119 TAGIRAVQLWDQLLH 133
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein;
HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP:
a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Length = 509
Score = 103 bits (259), Expect = 6e-27
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNR 60
G+ C++ W R+ +R+ DNPAL +A+ G I L++ P G
Sbjct: 7 GCGSGGCSIVWFRRDLRVEDNPALAAAV----RAGPVI---ALFVWAPEEEGHYHPGRVS 59
Query: 61 WRFLQQSLADLDQKFRALGSRLYVVQGK-PEEVFPDIFKTWNIKLLTWEYDIEPYAKKRD 119
+L+ SLA LD R+LG+ L + D+ K+ + + + +P + RD
Sbjct: 60 RWWLKNSLAQLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRD 119
Query: 120 GLVEDMAKEYKVKVEQHVSHTLY 142
+D+ + V + LY
Sbjct: 120 HRAKDVLTAQGIAVRSFNADLLY 142
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein,
nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A
{Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB:
1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Length = 420
Score = 101 bits (255), Expect = 2e-26
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+ W R +RLHD+PALL A+ +G + L +LDP+ + P R + ++
Sbjct: 4 LLVWHRGDLRLHDHPALLEAL----ARGPVV---GLVVLDPNNL---KTTPRRRAWFLEN 53
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
+ L + +RA G L+V++G P E P+ + K + PY + RDG V +
Sbjct: 54 VRALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVRE 110
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD,
DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Length = 440
Score = 101 bits (253), Expect = 3e-26
Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPH-FRKFMRVGPNRWRFLQQ 66
+ R+ +RL DN L A+ + ++ P++I DP F+
Sbjct: 3 CIFIFRRDLRLEDNTGLNYAL----SECDRVI--PVFIADPRQLINNPYKSEFAVSFMIN 56
Query: 67 SLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMA 126
SL +LD + R GSRL V G+ E+V F + + D P++ RD + +
Sbjct: 57 SLLELDDELRKKGSRLNVFFGEAEKVVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVC 114
Query: 127 KEYKVKVEQHVSHTL 141
+E ++ + + + L
Sbjct: 115 EENGIEFKAYEDYLL 129
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD;
1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Length = 482
Score = 100 bits (251), Expect = 7e-26
Identities = 23/138 (16%), Positives = 53/138 (38%), Gaps = 8/138 (5%)
Query: 5 PECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFL 64
V+W+ + R DN ALL + E ++ ++ L F + G ++ F+
Sbjct: 36 DGPVVYWMSRDQRAEDNWALLFSRAIAKEANVPVV--VVFCLTDEFLE---AGIRQYEFM 90
Query: 65 QQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVED 124
+ L +L+ + ++G P E K +N L ++ + ++ +E
Sbjct: 91 LKGLQELEVSLSRKKIPSFFLRGDPGEKISRFVKDYNAGTLVTDFS---PLRIKNQWIEK 147
Query: 125 MAKEYKVKVEQHVSHTLY 142
+ + + +H +
Sbjct: 148 VISGISIPFFEVDAHNVV 165
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy
transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA
FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1
c.28.1.1
Length = 471
Score = 98.0 bits (245), Expect = 5e-25
Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 11/139 (7%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+ W R+ +RLHDN AL +A +L LYI P + P + +
Sbjct: 3 HLVWFRQDLRLHDNLALAAAC----RNSSARVL-ALYIATPRQWATHNMSPRQAELINAQ 57
Query: 68 LADLDQKFRALGSRLYVVQGK----PEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L L G L + E+ + ++ L + Y E + RD VE
Sbjct: 58 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVE 117
Query: 124 DMAKEYKVKVEQHVSHTLY 142
+ V E +
Sbjct: 118 RALRN--VVCEGFDDSVIL 134
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine
dimers, UV damaged DNA, DNA repai flavoprotein; HET:
FAD; 1.71A {Oryza sativa japonica group}
Length = 506
Score = 84.0 bits (208), Expect = 6e-20
Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 10/140 (7%)
Query: 6 ECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWR--F 63
V+W+ + RL DN ALL A PL + F + + R + F
Sbjct: 38 GPVVYWMLRDQRLADNWALLHAAGLAAASA-----SPLAVAFALFPRPFLLSARRRQLGF 92
Query: 64 LQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVE 123
L + L L A ++ G P E+ P + + L ++ ++ V
Sbjct: 93 LLRGLRRLAADAAARHLPFFLFTGGPAEI-PALVQRLGASTLVADFSPLRPVREALDAVV 151
Query: 124 DMAKEYK--VKVEQHVSHTL 141
+ V V Q +H +
Sbjct: 152 GDLRREAPGVAVHQVDAHNV 171
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 8e-06
Identities = 29/153 (18%), Positives = 51/153 (33%), Gaps = 51/153 (33%)
Query: 11 WIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYI-LDPHFRKFMRVGPNRWRFLQQSLA 69
++ R D P + N P + + + +R G W +
Sbjct: 310 YL--DCRPQDLPREVLTTN------------PRRLSI---IAESIRDGLATWDNWKHV-- 350
Query: 70 DLDQKFRALGSRLYVVQGKPEE---------VFP-DIFKTWNI--KLLT--W----EYDI 111
+ D+ + S L V+ +P E VFP +I LL+ W + D+
Sbjct: 351 NCDKLTTIIESSLNVL--EPAEYRKMFDRLSVFPPSA----HIPTILLSLIWFDVIKSDV 404
Query: 112 EPYAKK--RDGLVEDMAKEYKVKVEQHVSHTLY 142
K + LVE KE + + ++Y
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISI-----PSIY 432
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.12
Identities = 20/132 (15%), Positives = 48/132 (36%), Gaps = 22/132 (16%)
Query: 18 LHDNP--ALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKF 75
L N AL + + +N+ L+K ++ + + + +L F
Sbjct: 96 LEGNDIHALAAKLLQENDT---TLVKTKELIKNYITARIMAKRPFDKKSNSAL------F 146
Query: 76 RALGS---RLYVV---QGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKEY 129
RA+G +L + QG ++ F ++ + T+ + K + ++ +
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ----TYHVLVGDLIKFSAETLSELIRT- 201
Query: 130 KVKVEQHVSHTL 141
+ E+ + L
Sbjct: 202 TLDAEKVFTQGL 213
Score = 25.4 bits (55), Expect = 8.8
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 32/96 (33%)
Query: 11 WIRKGMRLHDN------PALLSAINYKNEKGQNILLKPLYILDPHFRKFMRV-GPNRWRF 63
+I G+R ++ P + + +N +G P +L + +
Sbjct: 305 FI--GVRCYEAYPNTSLPPSILEDSLENNEGV-----PSPML--------SISNLTQ-EQ 348
Query: 64 LQQSLADLDQKFR-------AL--GSRLYVVQGKPE 90
+Q + + +L G++ VV G P+
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I
protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB:
3m6k_A* 3m7d_A 3m7g_A
Length = 380
Score = 30.8 bits (69), Expect = 0.13
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 72 DQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYD---IEPYAKKRDGLVEDMAKE 128
D+ R LG + V+G+ + I+ W+ ++ EYD + + K+RD L+E++ +
Sbjct: 201 DEIARRLGLSVSEVEGEKDPESSGIYSLWSRVVVNIEYDERTAKRHVKRRDRLLEELYEH 260
Query: 129 YKVKVEQHVSHTL 141
+ E+++ H L
Sbjct: 261 LEELSERYLRHPL 273
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H
helix, HHH motif, three helix bundle, methanopyrus
kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP:
a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB:
2csd_A
Length = 519
Score = 30.8 bits (69), Expect = 0.13
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 72 DQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYD---IEPYAKKRDGLVEDMAKE 128
D+ R LG + V+G+ + I+ W+ ++ EYD + + K+RD L+E++ +
Sbjct: 201 DEIARRLGLSVSEVEGEKDPESSGIYSLWSRVVVNIEYDERTAKRHVKRRDRLLEELYEH 260
Query: 129 YKVKVEQHVSHTL 141
+ E+++ H L
Sbjct: 261 LEELSERYLRHPL 273
>3zxa_C Capsid protein; ssRNA virus, icosahedral virus; 3.20A {Turnip
crinkle virus} PDB: 3zx9_A 3zx8_A
Length = 347
Score = 27.2 bits (59), Expect = 2.1
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 59 NRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKL 104
+ RF+ ++D K G + G+ ++ + ++L
Sbjct: 192 STDRFVADGISD--PKLVDFGKLIMATYGQGAAQLGEVRVEYTVQL 235
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 26.5 bits (58), Expect = 4.7
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
AV++ K +L L ++ N K N L L+I + ++ F S
Sbjct: 1435 AVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNIS 1494
Query: 68 LADLDQK-----FRALGSRLYVVQGKPEE 91
LA +K FR + + L+ + ++
Sbjct: 1495 LAQRLEKHELIEFRRIAAYLFKGNNRWKQ 1523
>3qxf_A Endoglucanase; cellulase, GH8, cellulose synthesis, cellulose
degradation,; 1.85A {Escherichia coli k-12} PDB: 3qxq_A*
Length = 355
Score = 25.8 bits (56), Expect = 6.0
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 29 NYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRALG 79
+ + P Y+ + F R G W L+++ L + G
Sbjct: 146 KVGFAEDNSWRFNPSYLPPTLAQYFTRFGA-PWTTLRETNQRLLLETAPKG 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.438
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,385,484
Number of extensions: 136220
Number of successful extensions: 379
Number of sequences better than 10.0: 1
Number of HSP's gapped: 357
Number of HSP's successfully gapped: 24
Length of query: 146
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 61
Effective length of database: 4,328,508
Effective search space: 264038988
Effective search space used: 264038988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.9 bits)