RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9352
(146 letters)
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 185
Score = 64.2 bits (155), Expect = 3e-14
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
Query: 7 CAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQ 66
C++ W R+ +R+ DNPAL +A+ + ++ L++ P G +L+
Sbjct: 1 CSIVWFRRDLRVEDNPALAAAV-----RAGPVI--ALFVWAPEEEGHYHPGRVSRWWLKN 53
Query: 67 SLADLDQKFRALGSRLYVVQG-KPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
SLA LD R+LG+ L + D+ K+ + + + +P + RD +D+
Sbjct: 54 SLAQLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDV 113
Query: 126 AKEYKVKVEQHVSHTLYN 143
+ V + LY
Sbjct: 114 LTAQGIAVRSFNADLLYE 131
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc
6803 [TaxId: 1143]}
Length = 204
Score = 59.6 bits (143), Expect = 2e-12
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 11/148 (7%)
Query: 1 MGGTPECAVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDP-----HFRKFMR 55
M P + W R +RLHD+ L A+ + G I +Y DP + F +
Sbjct: 1 MKHVPPTVLVWFRNDLRLHDHEPLHRAL----KSGLAIT--AVYCYDPRQFAQTHQGFAK 54
Query: 56 VGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYA 115
GP R FLQQS+ +L + + +G++L V G PE+V P I K N K + + ++
Sbjct: 55 TGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEE 114
Query: 116 KKRDGLVEDMAKEYKVKVEQHVSHTLYN 143
+ + ++ + + TL +
Sbjct: 115 LDVERNLVKQLTILGIEAKGYWGSTLCH 142
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus
[TaxId: 32046]}
Length = 202
Score = 57.4 bits (137), Expect = 2e-11
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 9 VHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSL 68
+ W R+ +RL DN L +A + ++ L+ LDP + + P R +LQ L
Sbjct: 4 LFWHRRDLRLSDNIGLAAAR----AQSAQLI--GLFCLDPQILQSADMAPARVAYLQGCL 57
Query: 69 ADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDMAKE 128
+L Q+++ GSRL ++QG P+ + P + + + + W DIEPY + RDG V K
Sbjct: 58 QELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKT 117
Query: 129 YKVKVEQHVSHTLYN 143
++ Q L++
Sbjct: 118 AGIRAVQLWDQLLHS 132
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId:
562]}
Length = 200
Score = 54.2 bits (129), Expect = 2e-10
Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 9/143 (6%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+ W R+ +RLHDN AL +A +N + + LYI P + P + +
Sbjct: 3 HLVWFRQDLRLHDNLALAAAC--RNSSARVL---ALYIATPRQWATHNMSPRQAELINAQ 57
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFK----TWNIKLLTWEYDIEPYAKKRDGLVE 123
L L G L + +I K ++ L + Y E + RD VE
Sbjct: 58 LNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVE 117
Query: 124 DMAKEYKVKVEQHVSHTLYNTNL 146
+ + +
Sbjct: 118 RALRNVVCEGFDDSVILPPGAVM 140
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus
[TaxId: 274]}
Length = 170
Score = 49.2 bits (116), Expect = 1e-08
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 8 AVHWIRKGMRLHDNPALLSAINYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQS 67
+ W R +RLHD+PALL A+ ++ L +LDP+ K P R + ++
Sbjct: 3 LLVWHRGDLRLHDHPALLEAL-----ARGPVV--GLVVLDPNNLKTT---PRRRAWFLEN 52
Query: 68 LADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKRDGLVEDM 125
+ L + +RA G L+V++G P E P+ + K + PY + RDG V +
Sbjct: 53 VRALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREA 110
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 83
Score = 32.8 bits (75), Expect = 0.002
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 19 HDNPALLSAI-NYKNEKGQNILLKPLYILDPHFRKFMRVGPNRWRFLQQSLADLDQKFRA 77
D +++ + E G NI +LD +F V + Q L +F A
Sbjct: 10 KDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEK----QDFTYLRNEFEA 65
Query: 78 LGSRLYV-VQGKPEEVF 93
G L V + + +F
Sbjct: 66 FGQTLNVKINIQSAAIF 82
>d2csba5 a.267.1.1 (A:3-293) Topoisomerase V, catalytic domain
{Methanopyrus kandleri [TaxId: 2320]}
Length = 291
Score = 30.1 bits (67), Expect = 0.077
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 72 DQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYD---IEPYAKKRDGLVEDMAKE 128
D+ R LG + V+G+ + I+ W+ ++ EYD + + K+RD L+E++ +
Sbjct: 199 DEIARRLGLSVSEVEGEKDPESSGIYSLWSRVVVNIEYDERTAKRHVKRRDRLLEELYEH 258
Query: 129 YKVKVEQHVSHTL 141
+ E+++ H L
Sbjct: 259 LEELSERYLRHPL 271
>d2o0qa1 d.166.1.7 (A:2-114) Hypothetical protein CC0527
{Caulobacter crescentus [TaxId: 155892]}
Length = 113
Score = 25.9 bits (57), Expect = 1.3
Identities = 15/68 (22%), Positives = 28/68 (41%)
Query: 59 NRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLTWEYDIEPYAKKR 118
+W Q +L L + LG L + FP +++ + +T E D++ A
Sbjct: 46 AKWFRGQANLVLLAVEAEPLGEDLKWEASRGGARFPHLYRPLLVSEVTREADLDLDADGV 105
Query: 119 DGLVEDMA 126
L + +A
Sbjct: 106 PQLGDHLA 113
>d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId:
9606]}
Length = 124
Score = 24.0 bits (52), Expect = 6.6
Identities = 8/33 (24%), Positives = 10/33 (30%)
Query: 70 DLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNI 102
LD + VQG F FK+
Sbjct: 82 QLDDYLNGRAVQHREVQGFESATFLGYFKSGLK 114
>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 23.4 bits (50), Expect = 7.9
Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 12/67 (17%)
Query: 44 YILDPHFRKFMRVGPNRWR----------FLQQSLADLDQKFRALGSRLYVVQGKPEEVF 93
++LD + + R + ++ + + QG+ +F
Sbjct: 42 FVLDNGLCGKIYIWKGRKANEKERQAALQVAEGFISRMQYAPNTQVEI--LPQGRESPIF 99
Query: 94 PDIFKTW 100
FK W
Sbjct: 100 KQFFKDW 106
>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 146
Score = 23.9 bits (51), Expect = 8.0
Identities = 10/54 (18%), Positives = 19/54 (35%)
Query: 53 FMRVGPNRWRFLQQSLADLDQKFRALGSRLYVVQGKPEEVFPDIFKTWNIKLLT 106
+G + F QS D D K LG + + + + W +++
Sbjct: 87 VFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVD 140
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.438
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 598,616
Number of extensions: 27735
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 18
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.9 bits)