BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9353
(543 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S24|A Chain A, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|B Chain B, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|C Chain C, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|D Chain D, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|E Chain E, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|G Chain G, Crystal Structure Of Human Mrna Guanylyltransferase
pdb|3S24|F Chain F, Crystal Structure Of Human Mrna Guanylyltransferase
Length = 347
Score = 320 bits (821), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 163/320 (50%), Positives = 211/320 (65%), Gaps = 7/320 (2%)
Query: 228 FMPGVS--GVKALYDEDKIVQLQNEIKDLCNYERVGFPGSQPVSMDRNNIGYLAEKKYMV 285
F+ GV+ GV + + K+ ++Q + C +E GFPG+QPVSMD+ NI L K Y V
Sbjct: 4 FLEGVTVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLDLKPYKV 63
Query: 286 SWKADGTRYMMYIKNADEIYFTDRDFSMYKISGLTFPHRKDPNKRLTNTLLDGEMVIDRV 345
SWKADGTRYMM I +E++ DRD S++ +S L FP RKD L+NTLLDGEM+IDRV
Sbjct: 64 SWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDRV 123
Query: 346 QGQNIPRYLVYDIIRFDNNDVTRQKFTTRIQIIKVEIIEPRHRAMENSRINKLAEPFSVR 405
GQ +PRYL+YDII+F++ V F R+Q I+ EII PRH M+ I+K EPFSVR
Sbjct: 124 NGQAVPRYLIYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQEPFSVR 183
Query: 406 VKDFWSVDKAGYLLSDKFT--LCHEPDGLIFQPVDEPYVMGKAVDTLKWKPHTMNSIDFL 463
K F+ + + LL F + HE DGLIFQP + Y G+ D LKWKP ++NS+DF
Sbjct: 184 NKPFFDICTSRKLLEGNFAKEVSHEMDGLIFQPTGK-YKPGRCDDILKWKPPSLNSVDFR 242
Query: 464 MKIETRSGLGILPTKVGKLYAGSNRSQQQFAEMKITKATKDLDGKIVECKWENNQWVFMR 523
+KI G G+LP VG LY G ++ FA++K+TK K D KI+ECK+ENN WVFMR
Sbjct: 243 LKITRMGGEGLLPQNVGLLYVGG--YERPFAQIKVTKELKQYDNKIIECKFENNSWVFMR 300
Query: 524 ERTDKSFPNAVETAMGEWNN 543
+RTDKSFPNA TAM N+
Sbjct: 301 QRTDKSFPNAYNTAMAVCNS 320
>pdb|3RTX|A Chain A, Crystal Structure Of Mammalian Capping Enzyme (Mce1) And
Pol Ii Ctd Complex
pdb|3RTX|B Chain B, Crystal Structure Of Mammalian Capping Enzyme (Mce1) And
Pol Ii Ctd Complex
Length = 343
Score = 320 bits (820), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 160/320 (50%), Positives = 212/320 (66%), Gaps = 7/320 (2%)
Query: 228 FMPGVS--GVKALYDEDKIVQLQNEIKDLCNYERVGFPGSQPVSMDRNNIGYLAEKKYMV 285
F+ G++ GV + + K+ ++Q + C +E GFPG+QPVSMD+ NI L +K Y V
Sbjct: 8 FLEGITVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIRLLEQKPYKV 67
Query: 286 SWKADGTRYMMYIKNADEIYFTDRDFSMYKISGLTFPHRKDPNKRLTNTLLDGEMVIDRV 345
SWKADGTRYMM I +E++ DRD S++ +S L FP RKD L+NTLLDGEM+ID+V
Sbjct: 68 SWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGEMIIDKV 127
Query: 346 QGQNIPRYLVYDIIRFDNNDVTRQKFTTRIQIIKVEIIEPRHRAMENSRINKLAEPFSVR 405
GQ +PRYL+YDII+F+ V F R+Q I+ EII PRH M+ I+K EPFSVR
Sbjct: 128 NGQAVPRYLIYDIIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLIDKTQEPFSVR 187
Query: 406 VKDFWSVDKAGYLLSDKFT--LCHEPDGLIFQPVDEPYVMGKAVDTLKWKPHTMNSIDFL 463
K F+ ++ + LL F + HE DGLIFQP+ + Y G+ D LKWKP ++NS+DF
Sbjct: 188 PKQFFDINISRKLLEGNFAKEVSHEMDGLIFQPIGK-YKPGRCDDILKWKPPSLNSVDFR 246
Query: 464 MKIETRSGLGILPTKVGKLYAGSNRSQQQFAEMKITKATKDLDGKIVECKWENNQWVFMR 523
+KI G G+LP VG LY G ++ FA++K+TK K D KI+ECK+ENN WVFMR
Sbjct: 247 LKITRMGGEGLLPQNVGLLYVGG--YERPFAQIKVTKELKQYDNKIIECKFENNSWVFMR 304
Query: 524 ERTDKSFPNAVETAMGEWNN 543
+R DKSFPNA TAM N+
Sbjct: 305 QRIDKSFPNAYNTAMAVCNS 324
>pdb|1I9S|A Chain A, Crystal Structure Of The Rna Triphosphatase Domain Of
Mouse Mrna Capping Enzyme
Length = 210
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 100/138 (72%), Gaps = 1/138 (0%)
Query: 56 KQTRLKIGLWIDLTKTSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFI 115
K ++K+ L +DLT TSRFYD++++E+ I YIK+QC+GH E P + T FI LC +F
Sbjct: 55 KSLKVKMSLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFN 114
Query: 116 SKSPLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYKQDYLNELF 175
+SP E IGVHCTHGFNRTGFL+ ++LVE+M++ + AA+ F+ ARPPGIYK DYL ELF
Sbjct: 115 ERSPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELF 174
Query: 176 RRYDDVPCNLPAPPSYDD 193
RRY D+ P PP D
Sbjct: 175 RRYGDIE-EAPPPPVLPD 191
>pdb|2C46|A Chain A, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|B Chain B, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|C Chain C, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|D Chain D, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
Length = 241
Score = 169 bits (427), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 72/126 (57%), Positives = 97/126 (76%)
Query: 56 KQTRLKIGLWIDLTKTSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFI 115
K ++K+GL +DLT TSRFYD++++E+ I YIK+QC+GH E P + T FI LC +F
Sbjct: 77 KSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFN 136
Query: 116 SKSPLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYKQDYLNELF 175
++P E IGVHCTHGFNRTGFL+ ++LVE+M++ + AA+ F+ ARPPGIYK DYL ELF
Sbjct: 137 ERNPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELF 196
Query: 176 RRYDDV 181
RRY D+
Sbjct: 197 RRYGDI 202
>pdb|1I9T|A Chain A, Crystal Structure Of The Oxidized Rna Triphosphatase
Domain Of Mouse Mrna Capping Enzyme
Length = 210
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 75/138 (54%), Positives = 99/138 (71%), Gaps = 1/138 (0%)
Query: 56 KQTRLKIGLWIDLTKTSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFI 115
K ++K+ L +DLT TSRFYD++++E+ I YIK+QC+GH E P + T FI LC +F
Sbjct: 55 KSLKVKMSLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFN 114
Query: 116 SKSPLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYKQDYLNELF 175
+SP E IGVH THGFNRTGFL+ ++LVE+M++ + AA+ F+ ARPPGIYK DYL ELF
Sbjct: 115 ERSPPELIGVHXTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELF 174
Query: 176 RRYDDVPCNLPAPPSYDD 193
RRY D+ P PP D
Sbjct: 175 RRYGDIE-EAPPPPVLPD 191
>pdb|1P16|A Chain A, Structure Of An Mrna Capping Enzyme Bound To The
Phosphorylated Carboxyl-Terminal Domain Of Rna
Polymerase Ii
pdb|1P16|B Chain B, Structure Of An Mrna Capping Enzyme Bound To The
Phosphorylated Carboxyl-Terminal Domain Of Rna
Polymerase Ii
Length = 395
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 152/347 (43%), Gaps = 45/347 (12%)
Query: 229 MPGVSGVKALYDEDKIVQLQNEIKDLCNYERVGFPGSQPVSMDRNNIG-YLAEKKYMVSW 287
+P + G K DE++ +L+ + +L GFPGSQPVS +R ++ L +K Y V
Sbjct: 9 IPVIPGNK--LDEEETKELRLXVAELLGRRNTGFPGSQPVSFERRHLEETLXQKDYFVCE 66
Query: 288 KADGTRYMMYIKN----ADEIYFTDRDFSMYKISGLTFP-----HRKDPNKRLTNTLLDG 338
K DG R ++++ N + ++ R+ Y I + FP R+ P TLLDG
Sbjct: 67 KTDGLRCLLFLINDPDKGEGVFLVTRENDYYFIPNIHFPLSVNETREKPTYH-HGTLLDG 125
Query: 339 EMVID-RVQGQNIPRYLVYDIIRFDNNDVTRQKFTTRIQIIKVEIIEP--RHRAMENSRI 395
E+V++ R + + RY+++D + + + R+ I + +P + +
Sbjct: 126 ELVLENRNVSEPVLRYVIFDALAIHGKCIIDRPLPKRLGYITENVXKPFDNFKKHNPDIV 185
Query: 396 NKLAEPFSVRVKDFWSVDKAGYLLSDKFTLCHEPDGLIFQPVDEPYVMGKAVDTLKWKPH 455
N PF V K + A +LS L H DGLI+ + PYV G LKWKP
Sbjct: 186 NSPEFPFKVGFKTXLTSYHADDVLSKXDKLFHASDGLIYTCAETPYVFGTDQTLLKWKPA 245
Query: 456 TMNSIDFLMKI----------------ETRSGLGILPTKVG-KLYAGSNRSQQQFAEM-- 496
N++DF ++ T P + +++ GSN FA++
Sbjct: 246 EENTVDFQLEFVFNEVQDPDLDERDPTSTYLDYDAKPNLIKLRVWQGSN-VHTDFAKLDL 304
Query: 497 ------KITKATKDLDGKIVECKWENNQ---WVFMRERTDKSFPNAV 534
++ + L G+I EC+ + W +R R DKS N +
Sbjct: 305 SDDDWERLKALEQPLQGRIAECRQSTTKKGYWEXLRFRNDKSNGNHI 351
>pdb|1CKM|A Chain A, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKM|B Chain B, Structure Of Two Different Conformations Of Mrna Capping
Enzyme In Complex With Gtp
pdb|1CKN|A Chain A, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
pdb|1CKO|A Chain A, Structure Of Mrna Capping Enzyme In Complex With The Cap
Analog Gpppg
Length = 330
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 137/304 (45%), Gaps = 50/304 (16%)
Query: 241 EDKIVQLQNEIKDLCNYERVGFPGSQPVSMDRNNIGYLAEKKYMVSWKADGTRYMMYIKN 300
+D + ++++ D + R+ PG PVS++R + L + KY+VS K DG R+MM+
Sbjct: 37 DDIVAKMKDLAMDDHKFPRL--PGPNPVSIERKDFEKLKQNKYVVSEKTDGIRFMMFFTR 94
Query: 301 A---DEIYFTDRDFSMYKISGLTFPHRKDPNKRLTNTLLDGEMVIDRVQGQNIPRYLVYD 357
DR ++Y P + P ++ DGE+ +D V+ + ++++D
Sbjct: 95 VFGFKVCTIIDRAMTVY-----LLPFKNIPRVLFQGSIFDGELCVDIVEKKF--AFVLFD 147
Query: 358 IIRFDNNDVTRQKFTTRIQIIKVEIIEPRHRAMENSRINKLAEPFSVRVKDFWSVDKAGY 417
+ V++ +R +K R+++ + N +P +R K+ W +
Sbjct: 148 AVVVSGVTVSQMDLASRFFAMK--------RSLKEFK-NVPEDPAILRYKE-WIPLEHPT 197
Query: 418 LLSD---KFTLCHEPDGLIFQPVDEPYVMGKAVDTLKWKPHTMNSIDFLMKIETRSGLGI 474
++ D K + DGLI VDEP + G+ + K KP T ++IDF++ E + +GI
Sbjct: 198 IIKDHLKKANAIYHTDGLIIMSVDEPVIYGRNFNLFKLKPGTHHTIDFIIMSEDGT-IGI 256
Query: 475 LP------TKVGKLYAGSNRSQQQFAEMKITKATKDLDGKIVECKWENNQWVFMRERTDK 528
VGKL N+ G IVEC + + W +++ R+DK
Sbjct: 257 FDPNLRKNVPVGKLDGYYNK------------------GSIVECGFADGTWKYIQGRSDK 298
Query: 529 SFPN 532
+ N
Sbjct: 299 NQAN 302
>pdb|3KYH|C Chain C, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
pdb|3KYH|D Chain D, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
Length = 461
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 106/225 (47%), Gaps = 23/225 (10%)
Query: 262 FPGSQPVSMDRNNIG-YLAEKKYMVSWKADGTRYMMYI-----KNADEIYFTDRDFSMYK 315
FPGSQPVS +++ L Y V K DG R +M+I + DR+ + Y
Sbjct: 45 FPGSQPVSFQHSDVEEKLLAHDYYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENNYYL 104
Query: 316 ISGLTFPHRKDPNKR------LTNTLLDGEMVIDR---VQGQNIPRYLVYDIIRFDNNDV 366
++G FP K TLLDGE+VI + Q + RYL++D + + +
Sbjct: 105 VNGFRFPRLPQKKKEELLETLQDGTLLDGELVIQTNPMTKLQEL-RYLMFDCLAINGRCL 163
Query: 367 TRQKFTTRIQIIKVEIIEPRH--RAMENSRINKLAEPFSVRVKDF-WSVDKAGYLLSDKF 423
T+ ++R+ + E +P RA +R S++ DF + + K L DK
Sbjct: 164 TQSPTSSRLAHLGKEFFKPYFDLRAAYPNRCTTFPFKISMKHMDFSYQLVKVAKSL-DK- 221
Query: 424 TLCHEPDGLIFQPVDEPYVM-GKAVDTLKWKPHTMNSIDFLMKIE 467
L H DGLIF PV PY GK LKWKP N++DF + ++
Sbjct: 222 -LPHLSDGLIFTPVKAPYTAGGKDSLLLKWKPEQENTVDFKLILD 265
>pdb|1CKN|B Chain B, Structure Of Guanylylated Mrna Capping Enzyme Complexed
With Gtp
Length = 330
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 136/304 (44%), Gaps = 50/304 (16%)
Query: 241 EDKIVQLQNEIKDLCNYERVGFPGSQPVSMDRNNIGYLAEKKYMVSWKADGTRYMMYIKN 300
+D + ++++ D + R+ PG PVS++R + L + KY+VS DG R+MM+
Sbjct: 37 DDIVAKMKDLAMDDHKFPRL--PGPNPVSIERKDFEKLKQNKYVVSEXTDGIRFMMFFTR 94
Query: 301 A---DEIYFTDRDFSMYKISGLTFPHRKDPNKRLTNTLLDGEMVIDRVQGQNIPRYLVYD 357
DR ++Y P + P ++ DGE+ +D V+ + ++++D
Sbjct: 95 VFGFKVCTIIDRAMTVY-----LLPFKNIPRVLFQGSIFDGELCVDIVEKKF--AFVLFD 147
Query: 358 IIRFDNNDVTRQKFTTRIQIIKVEIIEPRHRAMENSRINKLAEPFSVRVKDFWSVDKAGY 417
+ V++ +R +K R+++ + N +P +R K+ W +
Sbjct: 148 AVVVSGVTVSQMDLASRFFAMK--------RSLKEFK-NVPEDPAILRYKE-WIPLEHPT 197
Query: 418 LLSD---KFTLCHEPDGLIFQPVDEPYVMGKAVDTLKWKPHTMNSIDFLMKIETRSGLGI 474
++ D K + DGLI VDEP + G+ + K KP T ++IDF++ E + +GI
Sbjct: 198 IIKDHLKKANAIYHTDGLIIMSVDEPVIYGRNFNLFKLKPGTHHTIDFIIMSEDGT-IGI 256
Query: 475 LP------TKVGKLYAGSNRSQQQFAEMKITKATKDLDGKIVECKWENNQWVFMRERTDK 528
VGKL N+ G IVEC + + W +++ R+DK
Sbjct: 257 FDPNLRKNVPVGKLDGYYNK------------------GSIVECGFADGTWKYIQGRSDK 298
Query: 529 SFPN 532
+ N
Sbjct: 299 NQAN 302
>pdb|1YN9|A Chain A, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
pdb|1YN9|B Chain B, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
pdb|1YN9|C Chain C, Crystal Structure Of Baculovirus Rna 5'-Phosphatase
Complexed With Phosphate
Length = 169
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 62 IGLWIDLTKTSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLE 121
IG IDLT TS++YD + Y KIQ G + P E + FI+ +F K P
Sbjct: 56 IGAIIDLTNTSKYYDGVHFLRAGLLYKKIQVPG-QTLPPESIVQEFIDTVKEFTEKCPGM 114
Query: 122 KIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYKQDYLNELF 175
+GVHCTHG NRTG+++ YL+ + AI F AR I +Q+Y+ +L
Sbjct: 115 LVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAIDRFEKARGHKIERQNYVQDLL 168
>pdb|4ERC|A Chain A, Structure Of Vhz Bound To Metavanadate
pdb|4ERC|B Chain B, Structure Of Vhz Bound To Metavanadate
Length = 150
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 28/58 (48%)
Query: 121 EKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYKQDYLNELFRRY 178
E +GVHC GF RTG +L YLV+E AI RP I + +F+ Y
Sbjct: 89 EAVGVHCALGFGRTGTMLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQEKAVFQFY 146
>pdb|2IMG|A Chain A, Crystal Structure Of Dual Specificity Protein Phosphatase
23 From Homo Sapiens In Complex With Ligand Malate Ion
Length = 151
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 27/58 (46%)
Query: 121 EKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYKQDYLNELFRRY 178
E +GVHC GF RTG L YLV+E AI RP I + +F+ Y
Sbjct: 90 EAVGVHCALGFGRTGTXLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQEKAVFQFY 147
>pdb|2I6I|A Chain A, Crystal Structures Of The Archaeal Sulfolobus Ptp-Fold
Phosphatase
pdb|2I6J|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Phosphate Ion
pdb|2I6M|A Chain A, Crystal Structure Of The Complexes Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Tungstate
pdb|3RO1|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Terpyridine
Platinum(Ii)
Length = 161
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 125 VHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYKQDYLNELF 175
VHC G RTG +L SYL+ +V +AI + RP + Q Y E+F
Sbjct: 94 VHCVGGIGRTGTILASYLILTEGLEVESAIDEVRLVRPGAV--QTYEQEMF 142
>pdb|3AWF|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
Length = 346
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 107 FINLCSKFISKSPLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMAR 161
FI+ +++ P I +HC G RTG L+ S+L+E+ FD + + +R
Sbjct: 113 FIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSR 167
>pdb|3AWG|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
Length = 334
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 107 FINLCSKFISKSPLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMAR 161
FI+ +++ P I +HC G RTG L+ S+L+E+ FD + + +R
Sbjct: 101 FIDDAKVWMTSDPDHVIAIHCKAGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSR 155
>pdb|3AWE|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
Length = 334
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 107 FINLCSKFISKSPLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMAR 161
FI+ +++ P I +HC G RTG L+ S+L+E+ FD + + +R
Sbjct: 101 FIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSR 155
>pdb|3V0I|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576, E411f
Length = 324
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 107 FINLCSKFISKSPLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIY 166
FI+ +++ P I +HC G RTG L+ S+L+E+ FD + + +R
Sbjct: 91 FIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDFE 150
Query: 167 KQDYLNELF 175
D +F
Sbjct: 151 VGDVFQGVF 159
>pdb|2DXP|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-Fold Phosphatase With Phosphopeptides
A-(P)y-R
pdb|2I6O|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-fold Phosphatase With Phosphopeptides
N-g-(p)y-k-n
pdb|2I6P|A Chain A, Crystal Structure Of The Complex Of The Archaeal
Sulfolobus Ptp-fold Phosphatase With Pnpp
Length = 161
Score = 35.0 bits (79), Expect = 0.094, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 125 VHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYKQDYLNELF 175
VH G RTG +L SYL+ +V +AI + RP + Q Y E+F
Sbjct: 94 VHSVGGIGRTGTILASYLILTEGLEVESAIDEVRLVRPGAV--QTYEQEMF 142
>pdb|2CFV|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Receptor Type J
Length = 316
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 104 TRVFIN---LCSKFISKSPLEK-IGVHCTHGFNRTG-FLLISYLV----EEMNFDVSAAI 154
T + IN L ++ +SP E I VHC+ G RTG F+ I L+ E DV +
Sbjct: 217 TDLLINFRYLVRDYMKQSPPESPILVHCSAGVGRTGTFIAIDRLIYQIENENTVDVYGIV 276
Query: 155 FAFSMARPPGIYKQD---YLNE 173
+ M RP + +D +LN+
Sbjct: 277 YDLRMHRPLMVQTEDQYVFLNQ 298
>pdb|3F81|A Chain A, Interaction Of Vhr With Sa3
pdb|3F81|B Chain B, Interaction Of Vhr With Sa3
Length = 183
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 18/133 (13%)
Query: 25 TSRFYNKSEVEENDIAYIKIQCEGHKEAPNEKQTRLKIGLWIDLTKTSRFYDKSEVEEND 84
T R Y + DI K+Q G N + R ++ + + FY +++
Sbjct: 32 TPRIYVGNASVAQDIP--KLQKLGITHVLNAAEGRS----FMHVNTNANFY-----KDSG 80
Query: 85 IAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIG---VHCTHGFNRTGFLLISY 141
I Y+ I+ +E + + FI ++ +K G VHC G++R+ L+I+Y
Sbjct: 81 ITYLGIKANDTQEF----NLSAYFERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAY 136
Query: 142 LVEEMNFDVSAAI 154
L+ DV +A+
Sbjct: 137 LMMRQKMDVKSAL 149
>pdb|1VHR|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase
pdb|1VHR|B Chain B, Human Vh1-Related Dual-Specificity Phosphatase
Length = 184
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 18/133 (13%)
Query: 25 TSRFYNKSEVEENDIAYIKIQCEGHKEAPNEKQTRLKIGLWIDLTKTSRFYDKSEVEEND 84
T R Y + DI K+Q G N + R ++ + + FY +++
Sbjct: 33 TPRIYVGNASVAQDIP--KLQKLGITHVLNAAEGRS----FMHVNTNANFY-----KDSG 81
Query: 85 IAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIG---VHCTHGFNRTGFLLISY 141
I Y+ I+ +E + + FI ++ +K G VHC G++R+ L+I+Y
Sbjct: 82 ITYLGIKANDTQEF----NLSAYFERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAY 137
Query: 142 LVEEMNFDVSAAI 154
L+ DV +A+
Sbjct: 138 LMMRQKMDVKSAL 150
>pdb|3V0J|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
pdb|3V0J|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
Length = 334
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 107 FINLCSKFISKSPLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIY 166
FI+ +++ P I +H G RTG L+ S+L+E+ FD + + +R ++
Sbjct: 106 FIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTDVF 165
Query: 167 K 167
+
Sbjct: 166 Q 166
>pdb|1OHC|A Chain A, Structure Of The Proline Directed Phosphatase Cdc14
pdb|1OHD|A Chain A, Structure Of Cdc14 In Complex With Tungstate
Length = 348
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 99 PNEKQTRVFINLCSKFISKSPLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFS 158
P + + F+++C ++ I VHC G RTG L+ Y+++ + I
Sbjct: 253 PTDAIVKEFLDIC-----ENAEGAIAVHCKAGLGRTGTLIACYIMKHYRMTAAETIAWVR 307
Query: 159 MARPPGI 165
+ RP +
Sbjct: 308 ICRPGSV 314
>pdb|3V0D|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0D|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0F|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0F|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0G|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|C Chain C, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|D Chain D, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0H|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
pdb|3V0H|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
Length = 339
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 107 FINLCSKFISKSPLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMAR 161
FI+ +++ P I +H G RTG L+ S+L+E+ FD + + +R
Sbjct: 106 FIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSR 160
>pdb|3V0E|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576(C363s)
Length = 324
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 107 FINLCSKFISKSPLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMAR 161
FI+ +++ P I +H G RTG L+ S+L+E+ FD + + +R
Sbjct: 91 FIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSSWLLEDGKFDTAKEALEYFGSR 145
>pdb|3I36|A Chain A, Crystal Structure Of Rat Protein Tyrosine Phosphatase Eta
Catalytic Domain
Length = 342
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 107 FINLCSKFISKSPLEK-IGVHCTHGFNRTG-FLLISYLV----EEMNFDVSAAIFAFSMA 160
F L ++ + P E I VHC+ G RTG F+ I L+ E DV ++ M
Sbjct: 223 FRYLVRDYMKQIPPESPILVHCSAGVGRTGTFIAIDRLIYQIENENTVDVYGIVYDLRMH 282
Query: 161 RPPGIYKQD---YLNE 173
RP + +D +LN+
Sbjct: 283 RPLMVQTEDQYVFLNQ 298
>pdb|1WRM|A Chain A, Crystal Structure Of Jsp-1
Length = 165
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 22/131 (16%)
Query: 63 GLWIDLTKTSRFYDKSEVEENDIAYI--------------KIQCEGHKEAPNEKQTRVFI 108
GL+I K +R D ++ +N + +I K C ++P++ TR F
Sbjct: 13 GLYIGNFKDAR--DAEQLSKNKVTHILSVHDSARPMLEGVKYLCIPAADSPSQNLTRHFK 70
Query: 109 NLCSKFISKSPL--EKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARP---P 163
KFI + L E VHC G +R+ L+I+Y++ +F A+ R P
Sbjct: 71 E-SIKFIHECRLRGESCLVHCLAGVSRSVTLVIAYIMTVTDFGWEDALHTVRAGRSCANP 129
Query: 164 GIYKQDYLNEL 174
+ Q L E
Sbjct: 130 NVGFQRQLQEF 140
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 123 IGVHCTHGFNRTG-FLLISYLVEEMNFDVSAAIF----AFSMARPPGIYKQD 169
I VHC+ G RTG F+ +S ++E M ++ IF RP + +D
Sbjct: 517 ISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKVLRTQRPAMVQTED 568
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 123 IGVHCTHGFNRTG-FLLISYLVEEMNFDVSAAIF 155
I VHC+ G RTG F+ +S ++E M ++ IF
Sbjct: 515 ISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIF 548
>pdb|2J16|B Chain B, Apo & Sulphate Bound Forms Of Sdp-1
Length = 182
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 121 EKIGVHCTHGFNRTGFLLISYLVEEMNFDV 150
EKI +HC G +R+ L+I+Y+++ N +
Sbjct: 118 EKILIHCQCGLSRSATLIIAYIMKYHNLSL 147
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
Length = 575
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 123 IGVHCTHGFNRTG-FLLISYLVEEMNFDVSAAIF----AFSMARPPGIYKQDYLNELFR 176
I VHC+ G RTG F+ +S ++E M ++ +F RP + +D +R
Sbjct: 503 ITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYR 561
>pdb|1J4X|A Chain A, Human Vh1-Related Dual-Specificity Phosphatase C124s
Mutant- Peptide Complex
Length = 184
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 18/133 (13%)
Query: 25 TSRFYNKSEVEENDIAYIKIQCEGHKEAPNEKQTRLKIGLWIDLTKTSRFYDKSEVEEND 84
T R Y + DI K+Q G N + R ++ + + FY +++
Sbjct: 33 TPRIYVGNASVAQDIP--KLQKLGITHVLNAAEGRS----FMHVNTNANFY-----KDSG 81
Query: 85 IAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIG---VHCTHGFNRTGFLLISY 141
I Y+ I+ +E + + FI ++ +K G VH G++R+ L+I+Y
Sbjct: 82 ITYLGIKANDTQEF----NLSAYFERAADFIDQALAQKNGRVLVHSREGYSRSPTLVIAY 137
Query: 142 LVEEMNFDVSAAI 154
L+ DV +A+
Sbjct: 138 LMMRQKMDVKSAL 150
>pdb|2P4D|A Chain A, Structure-Assisted Discovery Of Variola Major H1
Phosphatase Inhibitors
Length = 172
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 48 GHKEAPNEKQTRLKIGLWIDLTKTSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVF 107
+K A N + +K ++LT DK + ++I I I K +
Sbjct: 39 NYKNAXNAPSSEVKFKYVLNLTX-----DKYTLPNSNINIIHIPLVDDTTTDISK----Y 89
Query: 108 INLCSKFISKSPL--EKIGVHCTHGFNRTGFLLISYL 142
+ + F+SK E + VHC G NR+G +++YL
Sbjct: 90 FDDVTAFLSKCDQRNEPVLVHCVAGVNRSGAXILAYL 126
>pdb|4DRR|A Chain A, Cell Attachment Protein Vp8 Of A Human Rotavirus
Specifically Interacts With A-Type Histo-Blood Group
Antigen
pdb|4DRV|A Chain A, Cell Attachment Protein Vp8 Of A Human Rotavirus
Specifically Interacts With A-Type Histo-Blood Group
Antigen
pdb|4DS0|A Chain A, Cell Attachment Protein Vp8 Of A Human Rotavirus
Specifically Interacts With A-Type Histo-Blood Group
Antigen
Length = 163
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 18/81 (22%)
Query: 452 WKPHTMN-SIDFLMKIETRSGLGILPTKVGKLYAGSNRSQQQFA------EMKITKATKD 504
++P T N ID+ M I PT++G++ G+N + + FA ++ T+
Sbjct: 8 YQPTTFNLPIDYWMLIA--------PTQIGRVAEGTNTTDRWFACVLVEPNVQNTQREYV 59
Query: 505 LDGKIVECKWENNQ---WVFM 522
LDG+ V+ + NN W F+
Sbjct: 60 LDGQTVQLQVSNNSSTLWKFI 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,473,223
Number of Sequences: 62578
Number of extensions: 637396
Number of successful extensions: 1283
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1236
Number of HSP's gapped (non-prelim): 45
length of query: 543
length of database: 14,973,337
effective HSP length: 104
effective length of query: 439
effective length of database: 8,465,225
effective search space: 3716233775
effective search space used: 3716233775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)