RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9353
(543 letters)
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD,
lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP
GUN; 2.81A {Mus musculus} PDB: 3s24_A
Length = 343
Score = 239 bits (611), Expect = 9e-75
Identities = 161/326 (49%), Positives = 209/326 (64%), Gaps = 7/326 (2%)
Query: 222 IAKNPTFMPG--VSGVKALYDEDKIVQLQNEIKDLCNYERVGFPGSQPVSMDRNNIGYLA 279
+ F+ G V GV + + K+ ++Q + C +E GFPG+QPVSMD+ NI L
Sbjct: 2 LKLGAIFLEGITVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIRLLE 61
Query: 280 EKKYMVSWKADGTRYMMYIKNADEIYFTDRDFSMYKISGLTFPHRKDPNKRLTNTLLDGE 339
+K Y VSWKADGTRYMM I +E++ DRD S++ +S L FP RKD L+NTLLDGE
Sbjct: 62 QKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRMHLSNTLLDGE 121
Query: 340 MVIDRVQGQNIPRYLVYDIIRFDNNDVTRQKFTTRIQIIKVEIIEPRHRAMENSRINKLA 399
M+ID+V GQ +PRYL+YDII+F+ V F R+Q I+ EII PRH M+ I+K
Sbjct: 122 MIIDKVNGQAVPRYLIYDIIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLIDKTQ 181
Query: 400 EPFSVRVKDFWSVDKAGYLLSDKFT--LCHEPDGLIFQPVDEPYVMGKAVDTLKWKPHTM 457
EPFSVR K F+ ++ + LL F + HE DGLIFQP Y G+ D LKWKP ++
Sbjct: 182 EPFSVRPKQFFDINISRKLLEGNFAKEVSHEMDGLIFQP-IGKYKPGRCDDILKWKPPSL 240
Query: 458 NSIDFLMKIETRSGLGILPTKVGKLYAGSNRSQQQFAEMKITKATKDLDGKIVECKWENN 517
NS+DF +KI G G+LP VG LY G + FA++K+TK K D KI+ECK+ENN
Sbjct: 241 NSVDFRLKITRMGGEGLLPQNVGLLYVGGYE--RPFAQIKVTKELKQYDNKIIECKFENN 298
Query: 518 QWVFMRERTDKSFPNAVETAMGEWNN 543
WVFMR+R DKSFPNA TAM N+
Sbjct: 299 SWVFMRQRIDKSFPNAYNTAMAVCNS 324
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase,
transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A
{Candida albicans} SCOP: b.40.4.6 d.142.2.3
Length = 395
Score = 200 bits (509), Expect = 3e-59
Identities = 84/361 (23%), Positives = 148/361 (40%), Gaps = 41/361 (11%)
Query: 222 IAKNPTFMPGVSGVKALYDEDKIVQLQNEIKDLCNYERVGFPGSQPVSMDRNNIG-YLAE 280
+ +P + G K DE++ +L+ + +L GFPGSQPVS +R ++ L +
Sbjct: 2 VQLEEREIPVIPGNKL--DEEETKELRLMVAELLGRRNTGFPGSQPVSFERRHLEETLMQ 59
Query: 281 KKYMVSWKADGTRYMMYI----KNADEIYFTDRDFSMYKISGLTFPHRKDPNKR----LT 332
K Y V K DG R ++++ + ++ R+ Y I + FP + +
Sbjct: 60 KDYFVCEKTDGLRCLLFLINDPDKGEGVFLVTRENDYYFIPNIHFPLSVNETREKPTYHH 119
Query: 333 NTLLDGEMVIDRV-QGQNIPRYLVYDIIRFDNNDVTRQKFTTRIQIIKVEIIEPRHRAME 391
TLLDGE+V++ + + RY+++D + + + R+ I +++P +
Sbjct: 120 GTLLDGELVLENRNVSEPVLRYVIFDALAIHGKCIIDRPLPKRLGYITENVMKPFDNFKK 179
Query: 392 NSR--INKLAEPFSVRVKDFWSVDKAGYLLSDKFTLCHEPDGLIFQPVDEPYVMGKAVDT 449
++ +N PF V K + A +LS L H DGLI+ + PYV G
Sbjct: 180 HNPDIVNSPEFPFKVGFKTMLTSYHADDVLSKMDKLFHASDGLIYTCAETPYVFGTDQTL 239
Query: 450 LKWKPHTMNSIDFLMKIE--TRSGLGILPTKVGKLYAGSNRSQ--------------QQF 493
LKWKP N++DF ++ + Y + F
Sbjct: 240 LKWKPAEENTVDFQLEFVFNEVQDPDLDERDPTSTYLDYDAKPNLIKLRVWQGSNVHTDF 299
Query: 494 AEMKIT--------KATKDLDGKIVECKW---ENNQWVFMRERTDKSFPNAVETAMGEWN 542
A++ ++ + L G+I EC+ + W +R R DKS N +
Sbjct: 300 AKLDLSDDDWERLKALEQPLQGRIAECRQSTTKKGYWEMLRFRNDKSNGNHISVVEKILV 359
Query: 543 N 543
+
Sbjct: 360 S 360
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A
{Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6
d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B*
Length = 330
Score = 189 bits (480), Expect = 1e-55
Identities = 69/336 (20%), Positives = 131/336 (38%), Gaps = 36/336 (10%)
Query: 215 NRNNKSRIAKNPTFMPGVSGVKALYDEDKIVQLQNEIKDLC--NYERVGFPGSQPVSMDR 272
N + + G+ + + ++KDL +++ PG PVS++R
Sbjct: 7 NTGKNITTERAVLTLNGLQIKLHKVVGESRDDIVAKMKDLAMDDHKFPRLPGPNPVSIER 66
Query: 273 NNIGYLAEKKYMVSWKADGTRYMMYIK---NADEIYFTDRDFSMYKISGLTFPHRKDPNK 329
+ L + KY+VS K DG R+MM+ DR ++Y + P
Sbjct: 67 KDFEKLKQNKYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLPFKNIPRVL---- 122
Query: 330 RLTNTLLDGEMVIDRVQGQNIPRYLVYDIIRFDNNDVTRQKFTTRIQIIKVEIIEPRHRA 389
++ DGE+ +D V+ + ++++D + V++ +R +K + E ++
Sbjct: 123 -FQGSIFDGELCVDIVEKK--FAFVLFDAVVVSGVTVSQMDLASRFFAMKRSLKEFKNVP 179
Query: 390 MENSRINKLAEPFSVRVKDFWSVDKAGYLLSDKF--TLCHEPDGLIFQPVDEPYVMGKAV 447
+ +R K++ ++ + + DGLI VDEP + G+
Sbjct: 180 EDP---------AILRYKEWIPLEHPTIIKDHLKKANAIYHTDGLIIMSVDEPVIYGRNF 230
Query: 448 DTLKWKPHTMNSIDFLMKIETRSGLGILPTKVGKLYAGSNRSQQQFAEMKITKATKDLDG 507
+ K KP T ++IDF++ E + P + G G
Sbjct: 231 NLFKLKPGTHHTIDFIIMSEDGTIGIFDPNLRKNVPVGKLDGYYN-------------KG 277
Query: 508 KIVECKWENNQWVFMRERTDKSFPNAVETAMGEWNN 543
IVEC + + W +++ R+DK+ N T N
Sbjct: 278 SIVECGFADGTWKYIQGRSDKNQANDRLTYEKTLLN 313
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase,
guanylyltransferase, complex, hydrolase, mRNA
processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Length = 461
Score = 178 bits (452), Expect = 3e-50
Identities = 90/387 (23%), Positives = 139/387 (35%), Gaps = 67/387 (17%)
Query: 222 IAKNPTFMPGVSGVKALYDEDKIVQLQNEIKDLCNYERVG--FPGSQPVSMDRNNIG-YL 278
+A P + G+ + L+ + L N + FPGSQPVS +++ L
Sbjct: 5 LAMESRVAPEIPGLIQ--PGNVTQDLKMMVCKLLNSPKPTKTFPGSQPVSFQHSDVEEKL 62
Query: 279 AEKKYMVSWKADGTRYMMYI-----KNADEIYFTDRDFSMYKISGLTFPHRKDPNKR--- 330
Y V K DG R +M+I + DR+ + Y ++G FP K
Sbjct: 63 LAHDYYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENNYYLVNGFRFPRLPQKKKEELL 122
Query: 331 ---LTNTLLDGEMVIDRV--QGQNIPRYLVYDIIRFDNNDVTRQKFTTRIQIIKVEIIEP 385
TLLDGE+VI RYL++D + + +T+ ++R+ + E +P
Sbjct: 123 ETLQDGTLLDGELVIQTNPMTKLQELRYLMFDCLAINGRCLTQSPTSSRLAHLGKEFFKP 182
Query: 386 RHRAMENSRINKLAEPFSVRVKDFWSVDKAGYLLSDKFTLCHEPDGLIFQPVDEPYVMGK 445
PF + +K + + L H DGLIF PV PY G
Sbjct: 183 YFDLRAAYPNRCTTFPFKISMKHMDFSYQLVKVAKSLDKLPHLSDGLIFTPVKAPYTAGG 242
Query: 446 AVDTL-KWKPHTMNSIDFLMKIE--------------TRSGLGILPTKVGKLYAGSN--- 487
L KWKP N++DF + ++ R V LY
Sbjct: 243 KDSLLLKWKPEQENTVDFKLILDIPMVEDPSLPKDDRNRWYYNYDVKPVFSLYVWQGGAD 302
Query: 488 ---------------------RSQQQFAEMKITKAT--------KDLDGKIVECKW--EN 516
R+ ++FAE+ ++ + L+G+IVEC E
Sbjct: 303 VNSRLKHFDQPFDRKEFEILERTYRKFAELSVSDEEWQNLKNLEQPLNGRIVECAKNQET 362
Query: 517 NQWVFMRERTDKSFPNAVETAMGEWNN 543
W +R R DK N +
Sbjct: 363 GAWEMLRFRDDKLNGNHTSVVQKVLES 389
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA
processing, multifunctional enzyme,
nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A
1i9t_A
Length = 241
Score = 152 bits (384), Expect = 7e-43
Identities = 76/160 (47%), Positives = 105/160 (65%)
Query: 56 KQTRLKIGLWIDLTKTSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFI 115
K ++K+GL +DLT TSRFYD++++E+ I YIK+QC+GH E P + T FI LC +F
Sbjct: 77 KSLKVKMGLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFN 136
Query: 116 SKSPLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYKQDYLNELF 175
++P E IGVHCTHGFNRTGFL+ ++LVE+M++ + AA+ F+ ARPPGIYK DYL ELF
Sbjct: 137 ERNPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELF 196
Query: 176 RRYDDVPCNLPAPPSYDDSEASSSSKSHHSNNSSHSNSRN 215
RRY D+ P P D + + S + +
Sbjct: 197 RRYGDIEEAPPPPLLPDWCFEDDEDEDEDEDGKKESETGS 236
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine
phosphatase, P-loop, hydrolase; HET: PO4; 1.50A
{Autographa californicanucleopolyhedrovirus}
Length = 169
Score = 136 bits (344), Expect = 5e-38
Identities = 44/115 (38%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Query: 61 KIGLWIDLTKTSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPL 120
IG IDLT TS++YD + Y KIQ G P E + FI+ +F K P
Sbjct: 55 SIGAIIDLTNTSKYYDGVHFLRAGLLYKKIQVPGQ-TLPPESIVQEFIDTVKEFTEKCPG 113
Query: 121 EKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYKQDYLNELF 175
+GVHCTHG NRTG+++ YL+ + AI F AR I +Q+Y+ +L
Sbjct: 114 MLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAIDRFEKARGHKIERQNYVQDLL 168
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 91.7 bits (228), Expect = 5e-22
Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 6/120 (5%)
Query: 59 RLKIGLWIDLTKTSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKS 118
L + + LT+ + + +++ P Q F+ + + ++
Sbjct: 34 DLGVRHLVSLTERGPPH---SDSCPGLTLHRLRIPDF-CPPAPDQIDRFVQIVDEANARG 89
Query: 119 PLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYKQDYLNELFRRY 178
E +GVHC GF RTG +L YLV+E AI RP I + +F+ Y
Sbjct: 90 --EAVGVHCALGFGRTGTMLACYLVKERGLAAGDAIAEIRRLRPGSIETYEQEKAVFQFY 147
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics,
medical structural genomics of pathogen protozoa, MSGPP,
unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Length = 167
Score = 81.2 bits (200), Expect = 4e-18
Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 12/127 (9%)
Query: 59 RLKIGLWIDLTKTSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISK- 117
+ + + YD + V+ I + P ++ L +++
Sbjct: 45 HRGVRHLVRVCG--PTYDATLVKSRGIDVHSWPFDDG-APPTRAVLDSWLKLLDTELARQ 101
Query: 118 -----SPLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYK--QDY 170
P IGVHC G R L+ LVE N AI R I + +
Sbjct: 102 QEDPSVPPPTIGVHCVAGLGRAPILVALALVEYGNVSALDAIALIREKRKGAINQTQMHW 161
Query: 171 LNELFRR 177
+ + ++R
Sbjct: 162 ITK-YKR 167
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle,
hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1
c.45.1.1 PDB: 1ohc_A 1ohd_A
Length = 348
Score = 82.4 bits (203), Expect = 3e-17
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 8/120 (6%)
Query: 61 KIGLWIDLTKTSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPL 120
+ + R YD + + + P + + F+++C ++
Sbjct: 216 NHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFFADG-STPTDAIVKEFLDIC-----ENAE 269
Query: 121 EKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYK--QDYLNELFRRY 178
I VH G RTG L+ Y+++ + I + RP + Q +L
Sbjct: 270 GAIAVHSKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQQFLVMKQTNL 329
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.0 bits (150), Expect = 4e-10
Identities = 95/588 (16%), Positives = 173/588 (29%), Gaps = 215/588 (36%)
Query: 3 ESSSLSDESTSVEFESKSNLTKTSRF--YNKSEVEENDI-AYIKIQCEGHKEAPNEKQTR 59
E + DE T+ E L +F Y S VE + + + ++
Sbjct: 46 EGFAADDEPTTPA-E----LV--GKFLGYVSSLVEPSKVGQFDQV--------------- 83
Query: 60 LKIGLWIDLTKTSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFIN-LCSKFISKS 118
L + L F + +E NDI + + + K + N + ++ ++K
Sbjct: 84 LNLCLT-------EF-ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 119 PLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYKQ----DYLNEL 174
P +K L + V E N + AIF G Q DY EL
Sbjct: 136 PFDK---------KSNSALFRA--VGEGNAQL-VAIFG-------G---QGNTDDYFEEL 173
Query: 175 FRRYDDVPCNLPAPPSYDDSEASSSSKSHHSNNSSHSNSRN-----RNNKSR-----IAK 224
Y + + S ++ + N N + +
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 225 NPTFMPGVSGVKALYDEDKIVQLQNEIKDLCNYE---RVGFPGSQPVSMDRNNIGYLAEK 281
P P I +Q L +Y ++ G P + G
Sbjct: 234 IPISCPL------------IGVIQ-----LAHYVVTAKLL--GFTPGELRSYLKGATGHS 274
Query: 282 KYMV---------SWKADGTRYMMYIKNAD---EIYFTDRDFSMYKISGL----TFPHRK 325
+ +V SW++ + + + F G+ +P+
Sbjct: 275 QGLVTAVAIAETDSWES-------FFVSVRKAITVLF---------FIGVRCYEAYPNTS 318
Query: 326 DPNKRLTNTLLDGE-----MVIDRVQGQNIPRYLVYDIIRFDNNDVTRQKFTTRIQIIKV 380
P L ++L + E M+ + + + V D + N+ + K +++I
Sbjct: 319 LPPSILEDSLENNEGVPSPML--SISN--LTQEQVQDYVNKTNSHLPAGK---QVEI--S 369
Query: 381 EIIEPRH-----------------------RAMENSRINKLAEPFSVRVKDFWSVDKAGY 417
+ ++ ++ SRI PFS R K
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI-----PFSER--------KL-- 414
Query: 418 LLSDKFTLCHEPDGLIFQPVDEPY---VMGKAVDTLKWKPHTMNSIDFLMKIETRSGLGI 474
KF+ F PV P+ ++ A D + K N++ F + I
Sbjct: 415 ----KFSNR-------FLPVASPFHSHLLVPASDLIN-KDLVKNNVSF-----NAKDIQI 457
Query: 475 LPTKVGKLYAGSNRSQQQFAEMKITKATKDLDGKIVEC------KWEN 516
P V + GS+ + + + +IV+C KWE
Sbjct: 458 -P--VYDTFDGSD----------LRVLSGSISERIVDCIIRLPVKWET 492
Score = 45.0 bits (106), Expect = 6e-05
Identities = 68/377 (18%), Positives = 109/377 (28%), Gaps = 142/377 (37%)
Query: 137 LLISYLVEEMNFDVSAAIFAFSMARPPGIYKQDYLNELFRRYDDVPCNLPAPP--SYDDS 194
L +S+ E V A F Q L E F + LP P D
Sbjct: 9 LTLSHGSLEHVLLVPTASFFI--------ASQ--LQEQFNK------ILPEPTEGFAADD 52
Query: 195 EASSSSKSHHSNNSSHSNSRNRNNKSRIAKNPTFMPGVSG-VKALYDEDKIVQLQNEIKD 253
E ++ ++ + K F+ G V +L + K+ Q +
Sbjct: 53 EPTTPAEL-------------------VGK---FL----GYVSSLVEPSKVGQFDQVLNL 86
Query: 254 -LCNYERVGFPGSQPVSMDRNNIGYLAEKKYMVSWKADGTRYMMYIKNADEIYF-----T 307
L +E + ++ N+I LA K + + IKN Y
Sbjct: 87 CLTEFEN-CY-------LEGNDIHALA-AKLLQENDTTLVKTKELIKN----YITARIMA 133
Query: 308 DRDFSMYKISGLTFPHRKDPNKRLTNTLLDGEMVIDRVQGQNIPRYLVYDIIRFDNNDVT 367
R F S L F + N +L + G QG N Y F+
Sbjct: 134 KRPFDKKSNSAL-FRAVGEGNAQLV-AIFGG-------QG-NTDDY-------FE----- 171
Query: 368 RQKFTTRIQIIKVEIIEPRHRAMENSRINKLAEPFSVRVKDFWSVDKAGYLLSDKFTLCH 427
E+ + L + + V V D + + LS+
Sbjct: 172 -------------ELRD-------------LYQTYHVLVGDL--IKFSAETLSE------ 197
Query: 428 EPDGLIFQPVDEPYVMGKAVDTLKW--KPHTMNSIDFLMKIE----------------TR 469
LI +D V + ++ L+W P D+L+ I T
Sbjct: 198 ----LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 470 SGLGILPTKVGKLYAGS 486
LG P ++ G+
Sbjct: 254 KLLGFTPGELRSYLKGA 270
Score = 37.7 bits (87), Expect = 0.012
Identities = 46/333 (13%), Positives = 83/333 (24%), Gaps = 134/333 (40%)
Query: 28 FYNKSEVEENDIAYIKIQCEGHKEAPNEKQTRLKIGLWI-DL------TKTSRFYDKS-- 78
Y S+ D+ A + + G I D+ T F +
Sbjct: 1635 LYKTSKAA-QDVW---------NRA--DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 79 EVEENDIAYIKIQCEGHKEAPNEKQTRVFINL---CSKFISKSPLEKIGVHCTHGFNRTG 135
+ EN Y + E + K ++F + + + +S + + T
Sbjct: 1683 RIREN---YSAMIFETIVDG-KLKTEKIFKEINEHSTSYTFRSEKGLL--------SATQ 1730
Query: 136 FLLISYLVEEMNFDVSAAIFAFSMA-----RPPGIYKQDY------LNE----------- 173
F A+ A + G+ D L E
Sbjct: 1731 FT-------------QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 174 --------LFRR----YDDVPCNLPAPPSYDDSEASSSSKSHHSNNSSHSNSRNRNNKSR 221
+F R VP + R+N
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVP----------------------------RDELGRSNYGM 1809
Query: 222 IAKNPTFMPGVSGVKALYDEDKIV-QLQNEIKDLC---NYERVGFPGSQPV------SMD 271
IA NP + +AL +V ++ L NY Q V ++D
Sbjct: 1810 IAINPGRVAASFSQEAL---QYVVERVGKRTGWLVEIVNYN---VENQQYVAAGDLRALD 1863
Query: 272 R--NNIGYLAEKKY-----MVSWKADGTRYMMY 297
N + ++ +K S + ++
Sbjct: 1864 TVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 36.2 bits (83), Expect = 0.031
Identities = 52/295 (17%), Positives = 84/295 (28%), Gaps = 103/295 (34%)
Query: 264 GSQPVSMDRNNIG---YLAEKKYMVSWKADGTRYMMYIKNADEIYFTDRDFSMYKISGLT 320
GSQ M G Y K W AD + FS+ I
Sbjct: 1625 GSQEQGM-----GMDLYKTSKAAQDVWNR-----------ADNHFKDTYGFSILDIV--- 1665
Query: 321 FPHRKDPNKRLTNTLLDGEMVIDRVQGQNI-PRY--LVYDIIRFDNNDVTRQKFTTRIQI 377
+P LT GE +G+ I Y ++++ I D T + F +
Sbjct: 1666 ---INNP-VNLT-IHFGGE------KGKRIRENYSAMIFETIV-DGKLKTEKIFKEINEH 1713
Query: 378 IKVEIIE-------------PRHRAMENSRINKLAEPFSVRVKDF--------WS--VDK 414
P ME + L + ++
Sbjct: 1714 STSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL 1773
Query: 415 AGYL-LSDKFTLCHEPDGLIFQ---PVDEPYVMGKAVDTLKWKPHTMNSIDFLMKIETRS 470
A + + + G+ Q P DE +G++ ++ M
Sbjct: 1774 ADVMSIESLVEVVFYR-GMTMQVAVPRDE---LGRS--------------NYGM------ 1809
Query: 471 GLGILPTKVGKLYAGSNRSQQQFAEMKITKATKDLDGKIVE-----CKWENNQWV 520
+ I P +V + S + Q E ++ K T G +VE EN Q+V
Sbjct: 1810 -IAINPGRVAA--SFSQEALQYVVE-RVGKRT----GWLVEIVNYNV--ENQQYV 1854
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine
phosphatase IVA1...; structural genomics, NYSGXRC,
unknown function, PSI; 1.90A {Homo sapiens} SCOP:
c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Length = 159
Score = 53.5 bits (128), Expect = 1e-08
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 2/92 (2%)
Query: 71 TSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIGVHCTHG 130
YD + VE+ I + + P+ + +++L + P I VHC G
Sbjct: 48 CEATYDTTLVEKEGIHVLDWPFDDG-APPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAG 106
Query: 131 FNRTGFLLISYLVEEMNFDVSAAIFAFSMARP 162
R L+ L+ E A+ R
Sbjct: 107 LGRAPVLVALALI-EGGMKYEDAVQFIRQKRR 137
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 6e-08
Identities = 77/530 (14%), Positives = 158/530 (29%), Gaps = 159/530 (30%)
Query: 19 KSNLT-KTSRFYNKSEVEENDIAYIKIQCEGHKEAPNEKQTRLKIGLWIDLTKTSRFYDK 77
K+ + Y + I ++ + + +P L++ L K D
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNL---KNCNSPET---VLEM-----LQKLLYQIDP 211
Query: 78 SEVEENDIAY-IKIQCEGHKEAPNEKQTR--------VFINLCSKFISKSPLEKIGVHCT 128
+ +D + IK++ + V +N+ + + C
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA----WNAFNLSC- 266
Query: 129 HGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYKQDYLNELFRRYDDVPCN-LPA 187
+ LL + + +F +A S+ D + L +Y D LP
Sbjct: 267 ----KI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP- 319
Query: 188 PPSYDDSEASSSS----------KSHHSNNSSHSNSRNRNNKSRIAKNPTFMPGVSGVKA 237
E +++ + N + + I + S +
Sbjct: 320 ------REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE--------SSLNV 365
Query: 238 LYDEDKIVQLQNEIKDLCNYERVG-FPGSQPVSMDRNNIGYLAEKKYMVSWKADGTRYMM 296
L E + + ++R+ FP S + + W +M
Sbjct: 366 LEP--------AEYRKM--FDRLSVFPPSAHIP----------TILLSLIWFDVIKSDVM 405
Query: 297 YIKNADEIYFTDRDFSMYKISGLTFPHRKDPNKRLTNTLLDGEMVIDRVQGQNIP---RY 353
+ N +S+ + K P K T ++ + + +V+ +N R
Sbjct: 406 VVVN------KLHKYSLVE---------KQP-KESTISIPSIYLEL-KVKLENEYALHRS 448
Query: 354 LV--YDIIR-FDNNDVTRQK----FTTRIQIIKVEIIEPRHRAMENSRINKLAEPFSVRV 406
+V Y+I + FD++D+ F + I H ++N + F +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHI---------GHH--LKNIEHPERMTLFRMVF 497
Query: 407 KDF-WSVDKAGYLLSDKFTLCHEPDGLIFQPVDEPYVMGKAVDTL----KWKPH-TMNS- 459
DF + L K + H D + G ++TL +KP+ N
Sbjct: 498 LDFRF--------LEQK--IRH--DSTAWNAS------GSILNTLQQLKFYKPYICDNDP 539
Query: 460 ---------IDFLMKIETRSGLG--------ILPTKVGKLYAGSNRSQQQ 492
+DFL KIE L + ++ +++ Q+
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 37.1 bits (85), Expect = 0.016
Identities = 48/395 (12%), Positives = 107/395 (27%), Gaps = 105/395 (26%)
Query: 203 HHSNNSSHSNSRNRNNKSRIAKNPTFMPGVSG---VKALYDEDKIVQLQNEIKDLCNYER 259
HH + + K + F K + D K + + EI +
Sbjct: 3 HHHHMDFETGEHQYQYKDIL---SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI----- 54
Query: 260 VGFPGSQPVSMDRNNIGYLAEKKYMVSWKADGTRYMMYIKNADEIYFTDRDFSMYKISGL 319
+ VS L K+ + +++ + F M I
Sbjct: 55 IMSK--DAVSGTLRLFWTLLSKQEEM--------VQKFVEEVLR---INYKFLMSPI--- 98
Query: 320 TFPHRKDPNKRLTNTLLDGEMVIDRVQGQNIPRYLVYDIIRFDNNDVTRQKFTTRIQIIK 379
+ + + T + E DR+ N F +V+R + +++
Sbjct: 99 ----KTEQRQPSMMTRMYIEQR-DRLYNDNQV---------FAKYNVSRLQPYLKLR-QA 143
Query: 380 VEIIEPRHR--------------AMENSRINKLAEPFSVRVKDFW----SVDKAGYLLSD 421
+ + P A++ K+ ++ FW + + +L
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEM 201
Query: 422 KFTLCHEPDGLIFQPVDEPYVMGKAVDTLK----------------------WKPHTMNS 459
L ++ D D + + +++ N+
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 460 IDFLMKI--ETRSGLGILPTKVGKLYAGSNRSQQQFAEMKITKATKDLDGKIVECKWENN 517
+ KI TR + T ++ S + K L K ++C+ ++
Sbjct: 262 FNLSCKILLTTRF-KQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD- 317
Query: 518 QWVFMRERTDKSFPNAVETAM-GE--------WNN 543
+ + P + ++ E W+N
Sbjct: 318 ----LPREVLTTNPRRL--SIIAESIRDGLATWDN 346
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual
specific phosphatase, COMP with peptide, hydrolase;
2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Length = 189
Score = 51.2 bits (122), Expect = 1e-07
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 2/92 (2%)
Query: 71 TSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIGVHCTHG 130
YD + VE+ I + + P+ + +++L + P I VHC G
Sbjct: 69 CEATYDTTLVEKEGIHVLDWPFDDG-APPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAG 127
Query: 131 FNRTGFLLISYLVEEMNFDVSAAIFAFSMARP 162
R L+ L+ E A+ R
Sbjct: 128 LGRAPVLVALALI-EGGMKYEDAVQFIRQKRR 158
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 50.2 bits (120), Expect = 1e-07
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 71 TSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIGVHCTHG 130
+ Y S +++N + + I P++ Q F+ + +S+ E VHC G
Sbjct: 46 GDKDYYLSILKKNGLQPLHIPIPDG-GVPSDSQ---FLTIMKWLLSEK--EGNLVHCVGG 99
Query: 131 FNRTGFLLISYLVEEMNFDVSAAIFAFSMARP 162
RTG +L SYL+ +V +AI + RP
Sbjct: 100 IGRTGTILASYLILTEGLEVESAIDEVRLVRP 131
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell
divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Length = 579
Score = 49.4 bits (118), Expect = 2e-06
Identities = 39/206 (18%), Positives = 72/206 (34%), Gaps = 44/206 (21%)
Query: 270 MDRNNIGYLAEKKYMVSWKADGTRYMMYIKNADEIYF---TDRDFSMYKISGLTFPHRKD 326
M + G +E KY DG R + KN D + + + +K++ +
Sbjct: 242 MKKCPNGMFSEIKY------DGER-VQVHKNGDHFSYFSRSLKPVLPHKVAHFK-DYIPQ 293
Query: 327 PNKRLTNTLLDGEMV-IDRVQGQNIP-----------------RYLVYDIIRFDNNDVTR 368
+ +LD E++ ID G+ +P V+D I F++ +
Sbjct: 294 AFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMD 353
Query: 369 QKFTTRIQIIKVEIIEPRHRAMENSRINKLAEPFSVRVKDFWSVDKAGYLLSDKFTLCHE 428
+ R + + ++E +R M +E +K +++ E
Sbjct: 354 RPLCERRKFLHDNMVEIPNRIM-------FSE-----MKRVTKALDLADMITRVIQEGLE 401
Query: 429 PDGLIFQPVDEPYVMGKAVDTLKWKP 454
GL+ + V Y GK LK K
Sbjct: 402 --GLVLKDVKGTYEPGKR-HWLKVKK 424
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 46.6 bits (110), Expect = 5e-06
Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 15/132 (11%)
Query: 75 YDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIGVHCTHGFNRT 134
++ I P+ + + + K +H G R+
Sbjct: 91 NLLDLYQQCGIITHHHPIADG-GTPDIASCCEIMEELTTCLKNY--RKTLIHSYGGLGRS 147
Query: 135 GFLLISYLVE-EMNFDVSAAIFAFSMARPPG---IYKQ-DYLNELFRRYDDVPCNLPAPP 189
+ L+ AI + R G KQ +YL+E + L A
Sbjct: 148 CLVAACLLLYLSDTISPEQAIDSLRDLRGSGAIQTIKQYNYLHEFRDK-------LAAHL 200
Query: 190 SYDDSEASSSSK 201
S DS++ S S+
Sbjct: 201 SSRDSQSRSVSR 212
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG;
2.40A {Homo sapiens}
Length = 204
Score = 44.6 bits (105), Expect = 2e-05
Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 13/133 (9%)
Query: 327 PNKRLTNTLLDGEMVIDRVQGQNIPRYLVYDIIRFDNNDVTRQKFTTRIQIIKVEIIEPR 386
P N+ ++D + + Y V D++ + + + R +
Sbjct: 61 PGGNRRNSTAKDYTILDCIYNEVNQTYYVLDVMCWRGHPFYDCQTDFRFYWM-------H 113
Query: 387 HRAMENSRINKLAE--PFSVRVKDFWSVDKAGY--LLSDKFTLCHEPDGLIFQPVDEPYV 442
+ E + + + PF + +LS F E DGL+F Y
Sbjct: 114 SKLPEEEGLGEKTKLNPFKFVGLKNFPCTPESLCDVLSMDFP--FEVDGLLFYHKQTHYS 171
Query: 443 MGKAVDTLKWKPH 455
G +P+
Sbjct: 172 PGSTPLVGWLRPY 184
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol
phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus
musculus} PDB: 3rgq_A*
Length = 157
Score = 43.1 bits (102), Expect = 4e-05
Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Query: 76 DKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPL--EKIGVHCTHGFNR 133
E ++ + +++ P T ++ +F K + + VHC G +R
Sbjct: 47 TSKEWKKAGVEQLRLSTVDMTGVP----TLANLHKGVQFALKYQALGQCVYVHCKAGRSR 102
Query: 134 TGFLLISYLVEEMNFDVSAAIFAFSMARP-----PGIYKQ--DYLNELFRR 177
+ ++ +YL++ N+ AI A + R P + ++ E+ R
Sbjct: 103 SATMVAAYLIQVHNWSPEEAIEAIAKIRSHISIRPSQLEVLKEFHKEITAR 153
>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol,
hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1
c.45.1.1
Length = 324
Score = 42.6 bits (99), Expect = 2e-04
Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 6/128 (4%)
Query: 98 APNEKQTRVFINLCSKFISKSPLEKIGVHCTHGFNRTGFLLISYLVEEMNF-DVSAAIFA 156
P + + F +++S+ +HC G RTG ++ +YL+ F A+
Sbjct: 89 PPQLELIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGVMICAYLLHRGKFLKAQEALDF 148
Query: 157 FSMARPPG-----IYKQDYLNELFRRYDDVPCNLPAPPSYDDSEASSSSKSHHSNNSSHS 211
+ R I Q + + + +
Sbjct: 149 YGEVRTRDKKGVTIPSQRRYVYYYSYLLKNHLDYRPVALLFHKMMFETIPMFSGGTCNPQ 208
Query: 212 NSRNRNNK 219
+
Sbjct: 209 FVVCQLKV 216
>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4;
1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A*
3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A
Length = 339
Score = 42.7 bits (99), Expect = 2e-04
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 70 KTSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIGVHCTH 129
+ R YD+++ + N + + I P FI+ +++ P I +H
Sbjct: 73 CSERGYDETKFD-NHVYRVMIDDHN---VPTLVDLLKFIDDAKVWMTSDPDHVIAIHSKG 128
Query: 130 GFNRTGFLLISYLVEEMNF-DVSAAIFAFSMARPP 163
G RTG L+ S+L+E+ F A+ F R
Sbjct: 129 GKGRTGTLVSSWLLEDGKFDTAKEALEYFGSRRTD 163
>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2
domain, hydrolase; 2.20A {Bos taurus}
Length = 361
Score = 41.5 bits (96), Expect = 5e-04
Identities = 24/227 (10%), Positives = 56/227 (24%), Gaps = 16/227 (7%)
Query: 63 GLWIDLTKTSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEK 122
+ + + Y ++ + +AP+ ++ ++P
Sbjct: 62 DHYTVYNLSPKSYRTAKF---HSRVSECSWPIR-QAPSLHNLFAVCRNMYNWLLQNPKNV 117
Query: 123 IGVHCTHGFNRTGFLLISYLVEEMNF-DVSAAIFAFSMARPPGI------YKQDYLNELF 175
VHC G + L+ + + + A+ RP Y+ +L
Sbjct: 118 CVVHCLDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGIGLSPSHRRYLGYMCDLL 177
Query: 176 RRYDDVPCNLPAPPSYDDSEASSSSKSHHSNNSSHSNSRNRNNKSRI---AKNPTFMPGV 232
P P + S + N +++I + M
Sbjct: 178 ADKPYRPH--FKPLTIKSITVSPVPFFNKQRNGCRPYCDVLIGETKIYTTCADFERMKEY 235
Query: 233 SGVKALYDEDKIVQLQNEIKDLCNYERVGFPGSQPVSMDRNNIGYLA 279
+ +Q ++ + R + I L
Sbjct: 236 RVQDGKIFIPLSITVQGDVVVSMYHLRSTIGSRLQAKVTNTQIFQLQ 282
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold,
nucleotidyl transferase, structural genomic protein
structure initiative; HET: APK MSE; 2.40A {Mycobacterium
tuberculosis}
Length = 310
Score = 37.6 bits (88), Expect = 0.007
Identities = 22/142 (15%), Positives = 49/142 (34%), Gaps = 37/142 (26%)
Query: 335 LLDGEMVI---------DRVQ--GQNIP-RYLVYDIIRFDNNDVTRQKFTTRIQIIKVEI 382
+LDGE V+ ++Q G++ + +D++ D + ++ R ++++ +
Sbjct: 77 VLDGEAVVLDSSGVPSFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLE-TL 135
Query: 383 IEPRHRAMENSRINKLAEPFSVRVKDFW-SVDKAGYLLSDKFTLCHEPDGLIFQPVDEPY 441
+ E + K G E G+I + D Y
Sbjct: 136 ANATSL--------TVPELLPGDGAQAFACSRKHG----------WE--GVIAKRRDSRY 175
Query: 442 VMGKAVDT-LKWKPHTMNSIDF 462
G+ + +K K N+ +
Sbjct: 176 QPGRRCASWVKDKH--WNTQEV 195
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle,
cell division, DNA damage, DNA recombination, DNA
repair, DNA replication; HET: AMP; 1.8A {Pyrococcus
furiosus} PDB: 3rr5_A*
Length = 561
Score = 37.8 bits (88), Expect = 0.008
Identities = 41/219 (18%), Positives = 73/219 (33%), Gaps = 53/219 (24%)
Query: 270 MDRNNIGYLAEKKYMVSWKADGTRYMMYIKNADEIYFTDRDFSMYKISGLTFPH---RKD 326
+ E KY DG R + K+ +I R + ++ P
Sbjct: 237 LLEMGGEAEFEIKY------DGARVQV-HKDGSKIIVYSR--RLENVTR-AIPEIVEALK 286
Query: 327 PNKRLTNTLLDGEMVIDRVQGQNIP-----------------------RYLVYDIIRFDN 363
+++GE+V G+ +P ++D++ D
Sbjct: 287 EAIIPEKAIVEGELVAIGENGRPLPFQYVLRRFRRKHNIEEMMEKIPLELNLFDVLYVDG 346
Query: 364 NDVTRQKFTTRIQIIKVEIIEPRHRAMENSRINKLAEPFSVRVKDFWSVDKAGYLLSDKF 423
+ KF R + ++ EII+ + +AE V++A
Sbjct: 347 QSLIDTKFIDRRRTLE-EIIKQNEKIK-------VAE-----NLITKKVEEAEAFYKRAL 393
Query: 424 TLCHEPDGLIFQPVDEPYVMGKAVDT-LKWKPHTMNSID 461
+ HE GL+ + +D Y G LK KP TM ++D
Sbjct: 394 EMGHE--GLMAKRLDAVYEPGNRGKKWLKIKP-TMENLD 429
>3mmj_A MYO-inositol hexaphosphate phosphohydrolase; phytase, protein
tyrosine phosphatase, inositol phosphate, I phosphatase;
HET: IHP; 1.60A {Selenomonas ruminantium} PDB: 1u24_A
1u25_A* 1u26_A* 3o3l_A* 3moz_A* 2pt0_A 2psz_A 3d1h_A
3d1o_A 3d1q_A 2b4u_A 2b4p_A 2b4o_A
Length = 314
Score = 37.4 bits (86), Expect = 0.008
Identities = 16/137 (11%), Positives = 36/137 (26%), Gaps = 6/137 (4%)
Query: 30 NKSEVEENDIAYIKIQCEGHKEAPNEKQTRLKIGLWIDLTKTSRFYDKSEVEENDIAYIK 89
++ E ++ + + + ++ E + Y +
Sbjct: 128 SQHEALADERHRLHAALHKTVYIAPLGKHK-LPEGGEVRRVQKVQTEQEVAEAAGMRYFR 186
Query: 90 IQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIGVHCTHGFNRTGFLLISYLVEEMNFD 149
I H P + F+ + + H G RT ++ + + N
Sbjct: 187 IAATDHV-WPTPENIDRFLAFYR---TLPQDAWLHFHSEAGVGRTTAFMVMTDMLK-NPS 241
Query: 150 VSAAIFAFSMARPPGIY 166
VS + G Y
Sbjct: 242 VSLKDILYRQHEIGGFY 258
>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol
phosphatase, hydrolase; 2.30A {Mitsuokella multacida}
Length = 629
Score = 37.1 bits (85), Expect = 0.016
Identities = 19/135 (14%), Positives = 44/135 (32%), Gaps = 6/135 (4%)
Query: 35 EENDIAYIKIQCEGHKEAPNEKQTRLKIGLWIDLTKTSRFYDKSEVEENDIAYIKIQCEG 94
E+ +A +K K + I + + ++ V+++ Y ++ +
Sbjct: 153 EKEQLASLKGS--TVKSIYRFDDKKNVILSPVYVNYNKVRTEEEMVKQHGANYFRLTLQD 210
Query: 95 HKEAPNEKQTRVFINLCSKFISKSPLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAI 154
H P++ F+ S + HC G RT ++ + + + DVS
Sbjct: 211 HF-RPDDPDVDKFLEFYK---SLPKDAWLHYHCYAGMGRTTIFMVMHDILKNAKDVSFDD 266
Query: 155 FAFSMARPPGIYKQD 169
+ +
Sbjct: 267 IIQRQKLIGIVDLSE 281
Score = 34.0 bits (77), Expect = 0.15
Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 5/102 (4%)
Query: 65 WIDLTKTSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIG 124
+ S ++ VE+N + Y +I H P+ FIN + +
Sbjct: 479 PKPVKIESVMTEQQLVEKNGLHYYRIAATDHI-WPSAANIDEFINFTR---TMPANAWLH 534
Query: 125 VHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIY 166
HC G RT + Y + N DVS G Y
Sbjct: 535 FHCQAGAGRTTAYMAMYDM-MKNPDVSLGDILSRQYLLGGNY 575
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria
phage T7} SCOP: b.40.4.6 d.142.2.1
Length = 348
Score = 36.6 bits (84), Expect = 0.020
Identities = 33/247 (13%), Positives = 64/247 (25%), Gaps = 61/247 (24%)
Query: 267 PVSMDRNNIGYLAEK--KYMVSWKADGTRYMMYIKNADEIYFTDR------DFSMYKISG 318
VS + I + + K DG R + + N Y+ R
Sbjct: 10 AVSFVESAIKKALDNAGYLIAEIKYDGVRGNICVDNTANSYWLSRVSKTIPALEHLNGFD 69
Query: 319 LTFPHRKDPNKRL--TNTLLDGEMVIDRVQGQNIP------------------------- 351
+ + + ++ +LDGE+++ V
Sbjct: 70 VRWKRLLNDDRCFYKDGFMLDGELMVKGVDFNTGSGLLRTKWTDTKNQEFHEELFVEPIR 129
Query: 352 --------------RYLVYDIIRFDNNDVTRQKFTTRIQIIKVEIIEPRH--RAMENSRI 395
+Y I+ + ++ + + E +
Sbjct: 130 KKDKVPFKLHTGHLHIKLYAILPLHIVESGEDC-----DVMTLLMQEHVKNMLPLLQEYF 184
Query: 396 NKLAEPFSVRVKDFWSVDKAGYLLSDKFTLCHEPDGLIFQPVDEPYVMGKAVDTLKWKPH 455
++ + + + + + L K HE GLI + Y GK K KP
Sbjct: 185 PEIEWQAAESYEVY-DMVELQQLYEQKRAEGHE--GLIVKDPMCIYKRGKKSGWWKMKPE 241
Query: 456 TMNSIDF 462
N D
Sbjct: 242 --NEADG 246
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 34.7 bits (79), Expect = 0.067
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 81 EENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIG---VHCTHGFNRTGFL 137
+ +DI +I+ + + + K+ G VH T G R +
Sbjct: 68 KYSDIQHIRCEIRDFDAFDLRM----RLPAVVGTLYKAVKRNGGVTYVHSTAGMGRAPAV 123
Query: 138 LISYLVEEMNFDVSAAI 154
++Y+ + + A
Sbjct: 124 ALTYMFWVQGYKLMEAH 140
>2nlk_A Protein tyrosine phosphatase, receptor type, G VA (fragment);
PTPRG, R-PTP gamma, protein tyrosine phosphatase gamma,
D3S1 HPTPG, RPTPG, PTPG; 2.40A {Homo sapiens}
Length = 627
Score = 32.4 bits (74), Expect = 0.39
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 22/101 (21%)
Query: 125 VHCTHGFNRTG-FLLISYLVEEMN----FDVSAAIFAFSMARPPG----------IYK-- 167
VH +G G ++ L +++ DV ++ R PG IYK
Sbjct: 524 VHDEYGAVSAGMLCALTTLSQQLENENAVDVFQVAKMINLMR-PGVFTDIEQYQFIYKAM 582
Query: 168 QDYL----NELFRRYDDVPCNLPAPPSYDDSEASSSSKSHH 204
+ N D + D +E+ S +HH
Sbjct: 583 LSLVSTKENGNGPMTVDKNGAVLIADESDPAESMESLVAHH 623
>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase,
RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR;
2.90A {Homo sapiens} PDB: 1ygu_A*
Length = 610
Score = 32.4 bits (74), Expect = 0.48
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 100 NEKQTRVFINLCSKFISKSPLEKIGVHCTHGFNRTG-FLLISYLVEEM----NFDVSAAI 154
+K + + +K +P + +HC G +TG F + L+E D+ +
Sbjct: 522 KQKLPQKNSSEGNKHHKSTP---LLIHCRDGSQQTGIFCALLNLLESAETEEVVDIFQVV 578
Query: 155 FAFSMARP 162
A AR
Sbjct: 579 KALRKARL 586
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.64
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 7/28 (25%)
Query: 240 DEDKIVQLQNEIKDLCNYERVGFPGSQP 267
++ + +LQ +K L Y S P
Sbjct: 18 EKQALKKLQASLK-L--YA----DDSAP 38
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 29.4 bits (66), Expect = 0.72
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 203 HHSNNSSHSNSRNRNNKSRIAKNPTFMPGVSGVKALYD 240
HH ++ HS+ + ++ ++ P A++D
Sbjct: 2 HHHHH--HSSGVDLGTENLYFQSMGTTPAGPVWTAVFD 37
>1lar_A Protein (LAR); tyrosine phosphatease, LAR protein, hydrolase; 2.00A
{Homo sapiens} SCOP: c.45.1.2 c.45.1.2 PDB: 2fh7_A
2nv5_A
Length = 575
Score = 31.5 bits (72), Expect = 0.82
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 125 VHCTHGFNRTG-FLLISYLVEEMN----FDVSAAIFAFSMARP 162
VHC+ G RTG F+ +S ++E M D+ + RP
Sbjct: 505 VHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRP 547
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG
for eukaryotic structural genomics, phosphoprote
phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1
PDB: 2q47_A
Length = 151
Score = 30.1 bits (67), Expect = 0.97
Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 6/118 (5%)
Query: 59 RLKIGLWIDLT-KTSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISK 117
L + I L + + ++ N I + EG+KE P I + K +
Sbjct: 31 TLGLRSIIYLCPEPYPESNLQFLKSNGIRLFQFGIEGNKE-PFVNIPDHKIRMALKVLLD 89
Query: 118 SPLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYKQDYLNELF 175
+ +HC G +RTG L+ L + + +++ + K ++ F
Sbjct: 90 EKNHPVLIHCKRGKHRTG-CLVGCLRKLQKWCLTSIFDEYQRFAAA---KARVSDQRF 143
>2jjd_A Receptor-type tyrosine-protein phosphatase epsilo; transmembrane,
phosphoprotein, consorti structural, glycoprotein, SGC,
PTPRE, membrane genomics; 3.20A {Homo sapiens}
Length = 599
Score = 31.2 bits (71), Expect = 1.0
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 104 TRVFINLCSKFISKSPLEKIG---VHCTHGFNRTG-FLLISYLVEEMN----FDVSAAIF 155
+ I+L + + VHC+ G RTG F+ +S ++E + DV A+
Sbjct: 499 GKGMIDLIAAVQKQQQQTGNHPITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVK 558
Query: 156 AFSMARP 162
+ + RP
Sbjct: 559 SLRLQRP 565
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA
complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Length = 171
Score = 29.9 bits (66), Expect = 1.5
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 184 NLPAPPSYDDSEASSSSKSHHSNNSSHSNSRNRNNKSRIAKNPTFMPGVSGVKALYDEDK 243
+ P PSYD ++ + ++ + +++ + K+ +P + A Y
Sbjct: 6 HHPMVPSYDSFDSEDYPAALPNHKPKGTFKDYVRDRADLNKDKPVIPAAA--LAGYTGSG 63
Query: 244 IVQL 247
+QL
Sbjct: 64 PIQL 67
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 30.0 bits (68), Expect = 1.7
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 170 YLNELFRRY--DDVPCNLPAPPSYDDSEASSSSKSHHSNNSSHSNSRNRNNKSRI 222
LN+ FR C + S++ + S + SR S +
Sbjct: 307 CLNDRFRLGFKHAFRCCPFISAGDYEGLEMKSTRYLQTQGSVYKVSRLETTISTV 361
>3cm3_A Late protein H1, dual specificity protein phosphatase;
dual-specificity phosphatase, VH1, hydrolase; 1.32A
{Vaccinia virus} PDB: 2rf6_A 2p4d_A
Length = 176
Score = 29.7 bits (67), Expect = 1.7
Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 52 APNEKQTRLKIGLWIDLTKTSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLC 111
A + + +K ++LT DK + ++I I I + ++ F +
Sbjct: 47 AMDAPSSEVKFKYVLNLTM-----DKYTLPNSNINIIHIPLV---DDTTTDISKYF-DDV 97
Query: 112 SKFISKSPLE--KIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIF 155
+ F+SK + VH G NR+G ++++YL+ + + F
Sbjct: 98 TAFLSKCDQRNEPVLVHSAAGVNRSGAMILAYLMSKNKESLPMLYF 143
>3zsj_A Galectin-3; sugar binding protein; HET: LAT; 0.86A {Homo sapiens}
PDB: 2nmn_A* 2nn8_A* 2nmo_A* 3t1m_A* 3t1l_A* 1kjl_A*
1kjr_A* 1a3k_A* 2xg3_A* 3zsk_A 3zsl_A 3zsm_A 3ayc_A*
3aya_A* 3ayd_A* 3aye_A*
Length = 138
Score = 29.1 bits (65), Expect = 1.8
Identities = 10/95 (10%), Positives = 29/95 (30%), Gaps = 7/95 (7%)
Query: 259 RVGFPGSQPVSMDRNNI---GYLAEKKYMVSWKADGTRYMMYIKNADEIYFTDRDFSMYK 315
F + + N + E++ V G + + + + + + +
Sbjct: 48 NPRFNENNRRVIVCNTKLDNNWGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHL- 106
Query: 316 ISGLTFPHRKDPNKRLTNTLLDGEMVIDRVQGQNI 350
L + HR ++ + G++ + I
Sbjct: 107 ---LQYNHRVKKLNEISKLGISGDIDLTSASYTMI 138
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein
dual-specificity phosphatase, inhibitor; HET: STT; 1.90A
{Homo sapiens} PDB: 1vhr_A* 1j4x_A*
Length = 183
Score = 29.2 bits (66), Expect = 2.3
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 81 EENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIG---VHCTHGFNRTGFL 137
+++ I Y+ I+ + + F + FI ++ +K G VHC G++R+ L
Sbjct: 77 KDSGITYLGIKAN---DTQEFNLSAYF-ERAADFIDQALAQKNGRVLVHCREGYSRSPTL 132
Query: 138 LISYLVEEMNFDVSAAIFAFSMARP----PGIYKQ--DYLNELFRRYDDVP 182
+I+YL+ DV +A+ R G Q + L + P
Sbjct: 133 VIAYLMMRQKMDVKSALSIVRQNREIGPNDGFLAQLCQLNDRLAKEGKLKP 183
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase,
dual specifici phosphatase; 1.88A {Homo sapiens}
Length = 190
Score = 28.9 bits (65), Expect = 2.7
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 13/105 (12%)
Query: 82 ENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLE--KIGVHCTHGFNRTGFLLI 139
Y+K+ P+ F + + I + VHC G +R+ L I
Sbjct: 67 WPQFEYVKVPLADM---PHAPIGLYF-DTVADKIHSVSRKHGATLVHCAAGVSRSATLCI 122
Query: 140 SYLVEEMNFDVSAAIFAFSMARP-----PGIYKQ--DYLNELFRR 177
+YL++ N + A RP G ++Q DY +LF +
Sbjct: 123 AYLMKFHNVCLLEAYNWVKARRPVIRPNVGFWRQLIDYERQLFGK 167
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein,
structural genomics, NPPSFA, project on protein
structural and functional analyses; 1.67A {Homo sapiens}
Length = 151
Score = 28.7 bits (65), Expect = 2.8
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
Query: 59 RLKIGLWIDLTKTSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKS 118
RL I ++ + + E I Y+ ++ ++P + F + FI ++
Sbjct: 25 RLGITHVLNASHSRWRGTPEAYEGLGIRYLGVEAH---DSPAFDMSIHF-QTAADFIHRA 80
Query: 119 PLEKIG---VHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARP 162
+ G VHC G +R+ L+++YL+ + + AI R
Sbjct: 81 LSQPGGKILVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHRG 127
>3b55_A Succinoglycan biosynthesis protein; Q81BN2, NESG, BCR135,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus cereus atcc 14579} SCOP:
c.150.1.3 PDB: 2rad_A
Length = 451
Score = 29.4 bits (65), Expect = 3.7
Identities = 8/59 (13%), Positives = 12/59 (20%), Gaps = 4/59 (6%)
Query: 124 GVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYKQDYLNELFRRYDDVP 182
H H ++ YLV E F + Y+
Sbjct: 83 ATHGAHEVFTMKHRIVKYLVSEKGFTN----LVLEEGWDRALELDRYVLTGKGNPSQHL 137
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure,
hydrolase; HET: EPE; 2.00A {Homo sapiens}
Length = 188
Score = 28.4 bits (64), Expect = 4.4
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 15/106 (14%)
Query: 82 ENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIG---VHCTHGFNRTGFLL 138
DI Y+++ ++PN + F + + I K G +HC G +R+ L
Sbjct: 61 YEDIQYMQVPVA---DSPNSRLCDFF-DPIADHIHSV-EMKQGRTLLHCAAGVSRSAALC 115
Query: 139 ISYLVEEMNFDVSAAIFAFSMARP-----PGIYKQ--DYLNELFRR 177
++YL++ + A RP G ++Q Y +LF +
Sbjct: 116 LAYLMKYHAMSLLDAHTWTKSCRPIIRPNSGFWEQLIHYEFQLFGK 161
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES;
1.50A {Homo sapiens}
Length = 165
Score = 28.0 bits (63), Expect = 5.1
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 15/106 (14%)
Query: 83 NDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIG---VHCTHGFNRTGFLLI 139
+ Y+ I ++P++ TR F KFI + + VHC G +R+ L+I
Sbjct: 48 EGVKYLCIPAA---DSPSQNLTRHF-KESIKFIHEC-RLRGESCLVHCLAGVSRSVTLVI 102
Query: 140 SYLVEEMNFDVSAAIFAFSMARP-----PGIYKQ--DYLNELFRRY 178
+Y++ +F A+ R G +Q ++ +Y
Sbjct: 103 AYIMTVTDFGWEDALHTVRAGRSCANPNVGFQRQLQEFEKHEVHQY 148
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase;
2.10A {Homo sapiens}
Length = 145
Score = 27.9 bits (63), Expect = 5.3
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 13/105 (12%)
Query: 82 ENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLE--KIGVHCTHGFNRTGFLLI 139
Y I+ + + N KFISK+ K VH G +R+ +I
Sbjct: 45 PGVFEYHNIRVY---DEEATDLLAYW-NDTYKFISKAKKHGSKCLVHSKMGVSRSASTVI 100
Query: 140 SYLVEEMNFDVSAAIFAFSMARP-----PGIYKQ--DYLNELFRR 177
+Y ++E +++ A R P +Q +Y L R
Sbjct: 101 AYAMKEYGWNLDRAYDYVKERRTVTKPNPSFMRQLEEYQGILLAR 145
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase;
HET: BOG; 2.40A {Homo sapiens}
Length = 160
Score = 27.6 bits (62), Expect = 7.7
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 8/82 (9%)
Query: 84 DIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIG---VHCTHGFNRTGFLLIS 140
DI Y++I P + F C FI G VH G +R+ ++ +
Sbjct: 50 DITYLRIPVADT---PEVPIKKHF-KECINFIHCC-RLNGGNCLVHSFAGISRSTTIVTA 104
Query: 141 YLVEEMNFDVSAAIFAFSMARP 162
Y++ + A RP
Sbjct: 105 YVMTVTGLGWRDVLEAIKATRP 126
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase,
nucleus; 2.90A {Homo sapiens} PDB: 1m3g_A
Length = 144
Score = 27.1 bits (61), Expect = 8.1
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 82 ENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLE--KIGVHCTHGFNRTGFLLI 139
E Y I E + + F ++I ++ VH G +R+ + +
Sbjct: 45 EGHYQYKCIPVE---DNHKADISSWF-MEAIEYIDAVKDCRGRVLVHSQAGISRSATICL 100
Query: 140 SYLVEEMNFDVSAAI 154
+YL+ + + A
Sbjct: 101 AYLMMKKRVRLEEAF 115
>3emu_A Leucine rich repeat and phosphatase domain containing protein;
structural genomics, hydrolase, PSI-2, protein structure
initiative; 2.30A {Entamoeba histolytica}
Length = 161
Score = 27.2 bits (61), Expect = 8.4
Identities = 10/84 (11%), Positives = 27/84 (32%), Gaps = 8/84 (9%)
Query: 82 ENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIG---VHCTHGFNRTGFLL 138
++ +++ + KFI +S +++ + G N+ ++
Sbjct: 51 KDQCDILRLDIV---SEEGHQLYDSI-PNAIKFIIRS-IQRKEGVLIISGTGVNKAPAIV 105
Query: 139 ISYLVEEMNFDVSAAIFAFSMARP 162
I++L+ A P
Sbjct: 106 IAFLMYYQRLSFINAFNKVQGLYP 129
>2qgm_A Succinoglycan biosynthesis protein; Q817Z0, NESG, X-RAY, BCR136,
structural genomics, PSI-2, protein structure
initiative; 1.70A {Bacillus cereus atcc 14579} SCOP:
c.150.1.3
Length = 445
Score = 27.9 bits (61), Expect = 9.3
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 124 GVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYKQDYLNELFRRYDDVP 182
H + F L+ YLV EM F FA G+ +Y+ +
Sbjct: 82 NTHGSSEIFTMKFRLVKYLVTEMGFTN----FAMEEDWGNGLKLNEYIQTGKGNPREFL 136
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.4 bits (60), Expect = 9.7
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 11/33 (33%)
Query: 381 EIIEPRHRAM---ENSRINK-----L---AEPF 402
+ P R + E S + L EPF
Sbjct: 139 AKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPF 171
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.391
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,158,229
Number of extensions: 485266
Number of successful extensions: 940
Number of sequences better than 10.0: 1
Number of HSP's gapped: 912
Number of HSP's successfully gapped: 67
Length of query: 543
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 445
Effective length of database: 3,965,535
Effective search space: 1764663075
Effective search space used: 1764663075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.4 bits)