RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9353
(543 letters)
>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit
{Yeast (Candida albicans) [TaxId: 5476]}
Length = 245
Score = 152 bits (385), Expect = 2e-43
Identities = 67/238 (28%), Positives = 112/238 (47%), Gaps = 14/238 (5%)
Query: 229 MPGVSGVKALYDEDKIVQLQNEIKDLCNYERVGFPGSQPVSMDRNNIG-YLAEKKYMVSW 287
+P + G K DE++ +L+ + +L GFPGSQPVS +R ++ L +K Y V
Sbjct: 9 IPVIPGNKL--DEEETKELRLMVAELLGRRNTGFPGSQPVSFERRHLEETLMQKDYFVCE 66
Query: 288 KADGTRYMMYIKNAD----EIYFTDRDFSMYKISGLTFPHRKDPNKR----LTNTLLDGE 339
K DG R ++++ N ++ R+ Y I + FP + + TLLDGE
Sbjct: 67 KTDGLRCLLFLINDPDKGEGVFLVTRENDYYFIPNIHFPLSVNETREKPTYHHGTLLDGE 126
Query: 340 MVIDR-VQGQNIPRYLVYDIIRFDNNDVTRQKFTTRIQIIKVEIIEPRHRAMENS--RIN 396
+V++ + + RY+++D + + + R+ I +++P +++ +N
Sbjct: 127 LVLENRNVSEPVLRYVIFDALAIHGKCIIDRPLPKRLGYITENVMKPFDNFKKHNPDIVN 186
Query: 397 KLAEPFSVRVKDFWSVDKAGYLLSDKFTLCHEPDGLIFQPVDEPYVMGKAVDTLKWKP 454
PF V K + A +LS L H DGLI+ + PYV G LKWKP
Sbjct: 187 SPEFPFKVGFKTMLTSYHADDVLSKMDKLFHASDGLIYTCAETPYVFGTDQTLLKWKP 244
>d1ckma2 d.142.2.3 (A:11-238) RNA guanylyltransferase (mRNA capping
enzyme), N-terminal domain {Chlorella virus PBCV-1
[TaxId: 10506]}
Length = 228
Score = 130 bits (327), Expect = 2e-35
Identities = 51/234 (21%), Positives = 98/234 (41%), Gaps = 23/234 (9%)
Query: 228 FMPGVSGVKALYDEDKIVQLQNEIKDL--CNYERVGFPGSQPVSMDRNNIGYLAEKKYMV 285
+ G+ + + ++KDL +++ PG PVS++R + L + KY+V
Sbjct: 10 TLNGLQIKLHKVVGESRDDIVAKMKDLAMDDHKFPRLPGPNPVSIERKDFEKLKQNKYVV 69
Query: 286 SWKADGTRYMMYIKNAD---EIYFTDRDFSMYKISGLTFPHRKDPNKRLTNTLLDGEMVI 342
S K DG R+MM+ DR ++Y + P ++ DGE+ +
Sbjct: 70 SEKTDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLPFKNIPR-----VLFQGSIFDGELCV 124
Query: 343 DRVQGQNIPRYLVYDIIRFDNNDVTRQKFTTRIQIIKVEIIEPRHRAMENSRINKLAEPF 402
D V + ++++D + V++ +R +K + E ++ +P
Sbjct: 125 DIV--EKKFAFVLFDAVVVSGVTVSQMDLASRFFAMKRSLKEFKNVPE---------DPA 173
Query: 403 SVRVKDFWSVDKAGYLLS--DKFTLCHEPDGLIFQPVDEPYVMGKAVDTLKWKP 454
+R K++ ++ + K + DGLI VDEP + G+ + K KP
Sbjct: 174 ILRYKEWIPLEHPTIIKDHLKKANAIYHTDGLIIMSVDEPVIYGRNFNLFKLKP 227
>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 194
Score = 113 bits (283), Expect = 1e-29
Identities = 74/134 (55%), Positives = 98/134 (73%)
Query: 56 KQTRLKIGLWIDLTKTSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFI 115
K ++K+ L +DLT TSRFYD++++E+ I YIK+QC+GH E P + T FI LC +F
Sbjct: 51 KSLKVKMSLLVDLTNTSRFYDRNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLCERFN 110
Query: 116 SKSPLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYKQDYLNELF 175
+SP E IGVHCTHGFNRTGFL+ ++LVE+M++ + AA+ F+ ARPPGIYK DYL ELF
Sbjct: 111 ERSPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELF 170
Query: 176 RRYDDVPCNLPAPP 189
RRY D+ P P
Sbjct: 171 RRYGDIEEAPPPPV 184
>d1ckma1 b.40.4.6 (A:239-327) RNA guanylyltransferase (mRNA capping
enzyme) {Chlorella virus PBCV-1 [TaxId: 10506]}
Length = 89
Score = 64.8 bits (158), Expect = 9e-14
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 13/88 (14%)
Query: 456 TMNSIDFLMKIETRSGLGILPTKVGKLYAGSNRSQQQFAEMKITKATKDLDGKIVECKWE 515
T ++IDF++ E + +GI + K G IVEC +
Sbjct: 1 THHTIDFIIMSEDGT-IGIFDPNLRKNVPVGKLDGY------------YNKGSIVECGFA 47
Query: 516 NNQWVFMRERTDKSFPNAVETAMGEWNN 543
+ W +++ R+DK+ N T N
Sbjct: 48 DGTWKYIQGRSDKNQANDRLTYEKTLLN 75
>d1p16a1 b.40.4.6 (A:246-390) mRNA capping enzyme alpha subunit
{Yeast (Candida albicans) [TaxId: 5476]}
Length = 145
Score = 60.8 bits (147), Expect = 8e-12
Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 27/114 (23%)
Query: 457 MNSIDFLMKIE--------TRSGLGILPT-------KVGKLYAGSNRSQQQ-FAEMKIT- 499
N++DF ++ + KL + FA++ ++
Sbjct: 2 ENTVDFQLEFVFNEVQDPDLDERDPTSTYLDYDAKPNLIKLRVWQGSNVHTDFAKLDLSD 61
Query: 500 -------KATKDLDGKIVECKW---ENNQWVFMRERTDKSFPNAVETAMGEWNN 543
+ L G+I EC+ + W +R R DKS N + +
Sbjct: 62 DDWERLKALEQPLQGRIAECRQSTTKKGYWEMLRFRNDKSNGNHISVVEKILVS 115
>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 182
Score = 57.4 bits (138), Expect = 3e-10
Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 14/131 (10%)
Query: 55 EKQTRLKIGLWIDLTKTSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKF 114
+ + I L K R YD + + + P + + F+++C
Sbjct: 52 QYFKNHNVTTIIRLNK--RMYDAKRFTDAGFDHHDLFFADG-STPTDAIVKEFLDIC--- 105
Query: 115 ISKSPLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGI------YKQ 168
++ I VH G RTG L+ Y+++ + I + RP + +
Sbjct: 106 --ENAEGAIAVHSKAGLGRTGTLIACYIMKHYRMTAAETIAWVRICRPGSVIGPQQQFLV 163
Query: 169 DYLNELFRRYD 179
L+ D
Sbjct: 164 MKQTNLWLEGD 174
>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa {Human
(Homo sapiens), pr-1 [TaxId: 9606]}
Length = 152
Score = 55.5 bits (133), Expect = 7e-10
Identities = 26/153 (16%), Positives = 51/153 (33%), Gaps = 8/153 (5%)
Query: 32 SEVEENDIAYIKIQCEGHKEAPNEKQTRLKIGLWIDLTKTSRFYDKSEVEENDIAYIKIQ 91
EV ++ ++ + + K G+ + YD + VE+ I +
Sbjct: 2 VEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWP 61
Query: 92 CEGHKEAPNEKQTRVFINLCSKFISKSPLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVS 151
+ P+ + +++L + P I VHC G R L+ L+E
Sbjct: 62 FDDGA-PPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEG-GMKYE 119
Query: 152 AAIFAFSMARPPGI------YKQDYLNELFRRY 178
A+ R Y + Y ++ R+
Sbjct: 120 DAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRF 152
>d1d5ra2 c.45.1.1 (A:14-187) Phoshphoinositide phosphatase Pten
(Pten tumor suppressor), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 174
Score = 46.5 bits (110), Expect = 1e-06
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 8/100 (8%)
Query: 70 KTSRFYDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIGVHCTH 129
R YD ++ + + E H P + + F +++S+ +HC
Sbjct: 58 CAERHYDTAKF---NCRVAQYPFEDH-NPPQLELIKPFCEDLDQWLSEDDNHVAAIHCKA 113
Query: 130 GFNRTGFLLISYLVEEMNF-DVSAAIFAFSMAR---PPGI 165
G RTG ++ +YL+ F A+ + R G+
Sbjct: 114 GKGRTGVMICAYLLHRGKFLKAQEALDFYGEVRTRDKKGV 153
>d2pt0a1 c.45.1.4 (A:34-346) Myo-inositol hexaphosphate
phosphohydrolase (phytase) PhyA {Selenomonas ruminantium
[TaxId: 971]}
Length = 313
Score = 44.3 bits (104), Expect = 2e-05
Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 6/112 (5%)
Query: 43 KIQCEGHKEAPNEKQTRLK-IGLWIDLTKTSRFYDKSEVEENDIAYIKIQCEGHKEAPNE 101
++ HK + K ++ E + Y +I H P
Sbjct: 138 RLHAALHKTVYIAPLGKHKLPEGGEVRRVQKVQTEQEVAEAAGMRYFRIAATDHV-WPTP 196
Query: 102 KQTRVFINLCSKFISKSPLEKIGVHCTHGFNRTGFLLISYLVEEMNFDVSAA 153
+ F+ + + HC G RT ++ + N VS
Sbjct: 197 ENIDRFLAFYR---TLPQDAWLHFHCEAGVGRTTAFMVMTDM-LKNPSVSLK 244
>d1x9na3 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 220
Score = 43.0 bits (100), Expect = 3e-05
Identities = 33/211 (15%), Positives = 68/211 (32%), Gaps = 17/211 (8%)
Query: 265 SQPVSMDRNNIGYLAEKKYMVSWKADGTRYMMYIKNADEIYFTDRDFSMY--KISGLTFP 322
+ P + E + +K DG R ++ E+ R+ K +
Sbjct: 12 AHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISR 71
Query: 323 HRKDPNKRLTNTLLDGEMVIDRVQGQNIPRYLVYDIIRFDNNDVTRQKFTTRI------- 375
K +T+ +LD E V + + I + V + D + + +
Sbjct: 72 IPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIY 131
Query: 376 ---QIIKVEIIEPRHRAMENSRINKLAEPFSVRVKDFWSVDKAGYLLSDKFTLCHEPDGL 432
+ + E + R + + + + E D +++ L E GL
Sbjct: 132 LNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCE--GL 189
Query: 433 IFQP--VDEPYVMGKAVDT-LKWKPHTMNSI 460
+ + VD Y + K LK K ++ +
Sbjct: 190 MVKTLDVDATYEIAKRSHNWLKLKKDYLDGV 220
>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1
[TaxId: 9606]}
Length = 145
Score = 41.6 bits (97), Expect = 4e-05
Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 9/101 (8%)
Query: 82 ENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIGVHCTHGFNRTGFLLISY 141
E Y I E ++ + I + ++ VH G +R+ + ++Y
Sbjct: 45 EGLFRYKSIPVEDNQMVEISAWFQEAIGFIDWVKNSGG--RVLVHSQAGISRSATICLAY 102
Query: 142 LVEEMNFDVSAAIFAFSMARP-----PGIYKQ--DYLNELF 175
L++ + A R Q + ++
Sbjct: 103 LMQSRRVRLDEAFDFVKQRRGVISPNFSFMGQLLQFETQVL 143
>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 176
Score = 42.0 bits (98), Expect = 5e-05
Identities = 10/91 (10%), Positives = 20/91 (21%), Gaps = 4/91 (4%)
Query: 75 YDKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIGVHCTHGFNRT 134
++ I + + + K +H G R+
Sbjct: 67 NLLDLYQQCGIITHHHPIADGGTPDIASCCE-IMEELTTCLKNYR--KTLIHSYGGLGRS 123
Query: 135 GFLLISYLVE-EMNFDVSAAIFAFSMARPPG 164
+ L+ AI + R G
Sbjct: 124 CLVAACLLLYLSDTISPEQAIDSLRDLRGSG 154
>d1vhra_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase, VHR
{Human (Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 40.5 bits (94), Expect = 1e-04
Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
Query: 76 DKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIGVHCTHGFNRTG 135
+ + +++ I Y+ I+ +E + + +++ ++ VHC G++R+
Sbjct: 67 NANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQKN-GRVLVHCREGYSRSP 125
Query: 136 FLLISYLVEEMNFDVSAAIFAFSMARP----PGIYKQ--DYLNELFRRYDDVP 182
L+I+YL+ DV +A+ R G Q + L + P
Sbjct: 126 TLVIAYLMMRQKMDVKSALSIVRQNREIGPNDGFLAQLCQLNDRLAKEGKLKP 178
>d3b55a1 c.150.1.3 (A:40-442) Succinoglycan biosynthesis protein
BC3120 {Bacillus cereus [TaxId: 1396]}
Length = 403
Score = 33.8 bits (77), Expect = 0.053
Identities = 8/49 (16%), Positives = 12/49 (24%), Gaps = 4/49 (8%)
Query: 124 GVHCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYKQDYLN 172
H H ++ YLV E F + Y+
Sbjct: 44 ATHGAHEVFTMKHRIVKYLVSEKGFTN----LVLEEGWDRALELDRYVL 88
>d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1
(mkp3) [TaxId: 9606]}
Length = 144
Score = 32.5 bits (73), Expect = 0.054
Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 81 EENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIGVHCTHGFNRTGFLLIS 140
+ Y +I H + I+ + K+ + VH G +R+ + ++
Sbjct: 46 NAGEFKYKQIPISDHWSQNLSQFFPEAISFIDEARGKNC--GVLVHSLAGISRSVTVTVA 103
Query: 141 YLVEEMNFDVSAAIFAFSMARP 162
YL++++N ++ A M +
Sbjct: 104 YLMQKLNLSMNDAYDIVKMKKS 125
>d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 239
Score = 32.9 bits (74), Expect = 0.061
Identities = 29/231 (12%), Positives = 61/231 (26%), Gaps = 43/231 (18%)
Query: 266 QPVSMDRNNIGYLAEK--KYMVSWKADGTRYMMYIKNADEIYFTDR---DFS-MYKISGL 319
+ VS + I + + K DG R + + N Y+ R + ++G
Sbjct: 9 KAVSFVESAIKKALDNAGYLIAEIKYDGVRGNICVDNTANSYWLSRVSKTIPALEHLNGF 68
Query: 320 T--FPHRKDPNKRLT--NTLLDGEMVIDRVQGQNIPRYLVYDIIRFDNNDVTRQKFTTRI 375
+ + ++ +LDGE+++ V L N + + F I
Sbjct: 69 DVRWKRLLNDDRCFYKDGFMLDGELMVKGVDFNTGSGLLRTKWTDTKNQEFHEELFVEPI 128
Query: 376 QIIKVEIIEPRHRAM------------------ENSRINKLAEPFSVRVKDFWSVDKAGY 417
+ + + + + E +
Sbjct: 129 RKKDKVPFKLHTGHLHIKLYAILPLHIVESGEDCDVMTLLMQEHVKNMLPLLQEYFPEIE 188
Query: 418 L-LSDKFTLCHEPD--------------GLIFQPVDEPYVMGKAVDTLKWK 453
++ + + + GLI + Y GK K K
Sbjct: 189 WQAAESYEVYDMVELQQLYEQKRAEGHEGLIVKDPMCIYKRGKKSGWWKMK 239
>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 151
Score = 32.1 bits (72), Expect = 0.081
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 76 DKSEVEENDIAYIKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEKIGVHCTHGFNRTG 135
+ ++ N I + EG+K P I + K + + +HC G +RTG
Sbjct: 49 NLQFLKSNGIRLFQFGIEGNK-EPFVNIPDHKIRMALKVLLDEKNHPVLIHCKRGKHRTG 107
Query: 136 FLLISYLVEEMNFDVSAAIFAFSMARPPGIYKQDYLNELF 175
L+ L + + +++ + K ++ F
Sbjct: 108 -CLVGCLRKLQKWCLTSIFDEYQRFAAA---KARVSDQRF 143
>d2qgma1 c.150.1.3 (A:33-445) Succinoglycan biosynthesis protein
BC3205 {Bacillus cereus [TaxId: 1396]}
Length = 413
Score = 33.0 bits (75), Expect = 0.095
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 126 HCTHGFNRTGFLLISYLVEEMNFDVSAAIFAFSMARPPGIYKQDYL 171
H + F L+ YLV EM F FA G+ +Y+
Sbjct: 52 HGSSEIFTMKFRLVKYLVTEMGFTN----FAMEEDWGNGLKLNEYI 93
>d1g4us2 c.45.1.2 (S:297-539) SptP tyrosine phosphatase, catalytic
domain {Salmonella typhimurium [TaxId: 90371]}
Length = 243
Score = 31.2 bits (70), Expect = 0.27
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 105 RVFINLCSKFISKSPLEKIGVHCTHGFNRTG-FLLISYLVEEMNFDVSAAIFAFSMARPP 163
+ + S S +HC G RTG L + + ++ F +R
Sbjct: 163 KNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRDSRNN 222
>d1yrza2 b.67.2.1 (A:1004-1320) Beta-D-xylosidase N-terminal domain
{Bacillus halodurans [TaxId: 86665]}
Length = 317
Score = 31.0 bits (69), Expect = 0.36
Identities = 19/162 (11%), Positives = 48/162 (29%), Gaps = 10/162 (6%)
Query: 252 KDLCNYERVGFPGSQPVSMDRNNIGYLAEKKYMVSWKADGTRYMMYIKNADEIYFTDRDF 311
+DL ++ V P ++ +D DGT Y++Y +
Sbjct: 42 RDLKHWRFVSSPLTRTSQLDMKGNMNSGGIWAPCLSYHDGTFYLIY-------TDVKQWH 94
Query: 312 SMYKISGLTFPHRKDPNKRLTNTLLDGEMVID--RVQGQNIPRYLVYDIIRFDN-NDVTR 368
+K + ++ ++ + D + ++LV I + N
Sbjct: 95 GAFKDAHNYLVTAQNIEGPWSDPIYLNSSGFDPSLFHDDDGRKWLVNMIWDYRKGNHPFA 154
Query: 369 QKFTTRIQIIKVEIIEPRHRAMENSRINKLAEPFSVRVKDFW 410
+ +++ P + + I P + ++
Sbjct: 155 GIILQEYSEAEQKLVGPVKNIYKGTDIQLTEGPHLYKKDGYY 196
>d2shpa1 c.45.1.2 (A:219-525) Tyrosine phosphatase {Human (Homo
sapiens), shp-2 [TaxId: 9606]}
Length = 307
Score = 28.7 bits (63), Expect = 1.9
Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 12/122 (9%)
Query: 28 FYNKSEVEENDIAYIKIQCEGHKEAPNEKQTRLKIGLWIDLTKTSRFYDKSEVEENDIAY 87
Y E + ++++ A + LK+ + +E +
Sbjct: 151 KYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKL--------SKVGQGNTERTVWQYHF 202
Query: 88 IKIQCEGHKEAPNEKQTRVFINLCSKFISKSPLEK-IGVHCTHGFNRTG-FLLISYLVEE 145
H + F+ + VHC+ G RTG F++I L++
Sbjct: 203 R--TWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDI 260
Query: 146 MN 147
+
Sbjct: 261 IR 262
>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL
{Escherichia coli [TaxId: 562]}
Length = 182
Score = 27.9 bits (62), Expect = 2.4
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 387 HRAMENSRINKLAEPFSVRVKDFWSVDKAGYLLSDKFTLCHE----PDGLIFQPVDEPYV 442
E I + + WS+ +A LL+D LC + P G + Q VD
Sbjct: 117 QSVFEPGNIAQWIARNLMSEHAQWSMAQAITLLADVERLCPQLVKTPPGGLLQSVD---- 172
Query: 443 MGKAVDTLK 451
+ A+ LK
Sbjct: 173 LHPAIKALK 181
>d1lyva_ c.45.1.2 (A:) Protein-tyrosine phosphatase YopH, catalytic
domain {Yersinia enterocolitica [TaxId: 630]}
Length = 283
Score = 28.2 bits (62), Expect = 2.6
Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 100 NEKQTRVFINLCSKFISKSPLEKIGVHCTHGFNRTG-FLLISYLVEEMN--FDVSAAIFA 156
E + ++ + S ++ + +H G RT + + + N V +
Sbjct: 191 AETKRNMYESKGSSAVADDSKLRPVIHSRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQ 250
Query: 157 FSMARPP 163
+ R
Sbjct: 251 MRVQRNG 257
>d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago
sativa) [TaxId: 3879]}
Length = 235
Score = 27.1 bits (59), Expect = 5.2
Identities = 8/54 (14%), Positives = 15/54 (27%)
Query: 152 AAIFAFSMARPPGIYKQDYLNELFRRYDDVPCNLPAPPSYDDSEASSSSKSHHS 205
A I A A P +Q + + + + + S K +
Sbjct: 17 ATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYM 70
>d1rpma_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens),
mu [TaxId: 9606]}
Length = 278
Score = 26.7 bits (58), Expect = 6.5
Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 8/138 (5%)
Query: 32 SEVEENDIAYIKIQCEGHKEAPNEKQTRLKIGLWIDLTKTSRFYDKSEVEENDIAYIKIQ 91
+ VE + K + + + K T ++ L + + +K V E
Sbjct: 121 NLVEVGRVKCCKYWPDDTEIYKDIKVTLIETELLAEYVIRTFAVEKRGVHEIREIRQ-FH 179
Query: 92 CEGHKEAPNEKQTRVFINLCSKFISKSPLEK--IGVHCTHGFNRTG-FLLISYLVEEMN- 147
G + + + SKSP + VHC+ G RTG F++I +++
Sbjct: 180 FTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLVVHCSAGAGRTGCFIVIDIMLDMAER 239
Query: 148 ---FDVSAAIFAFSMARP 162
D+ + R
Sbjct: 240 EGVVDIYNCVRELRSRRV 257
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.391
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,015,365
Number of extensions: 96168
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 38
Length of query: 543
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 453
Effective length of database: 1,171,896
Effective search space: 530868888
Effective search space used: 530868888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.3 bits)