BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9354
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AZE|A Chain A, Structure Of The Rb C-Terminal Domain Bound To An E2f1-Dp1
Heterodimer
Length = 155
Score = 131 bits (329), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 87/139 (62%), Gaps = 1/139 (0%)
Query: 112 QESLNLNKERKQLIQRINQKTRHLHDXXXXXXXXXXXXXXXXDSEKIHGEPAP-SSAIQL 170
QE NL ER++ ++RI QK L + +E+ P P +S I L
Sbjct: 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHL 64
Query: 171 PFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDL 230
PF+IV+T KKTVIDCS+SNDK EYLF FDN FEIHDDIE+LKRMG+ GL+ G + EDL
Sbjct: 65 PFIIVNTSKKTVIDCSISNDKFEYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSAEDL 124
Query: 231 QEAKRLVAPCMEKYVNQIA 249
+ A+ LV +E YV ++A
Sbjct: 125 KMARSLVPKALEPYVTEMA 143
>pdb|1CF7|B Chain B, Structural Basis Of Dna Recognition By The Heterodimeric
Cell Cycle Transcription Factor E2f-Dp
Length = 95
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 55/90 (61%), Gaps = 26/90 (28%)
Query: 49 EKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDHNTASSE------------- 95
+K KGLRHFSMKVCEKV+RKG T+YNEVADELV EF+ +N +++
Sbjct: 6 DKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVY 65
Query: 96 -------------QEKKEIKWLGLPTNSLQ 112
+EKKEIKW+GLPTNS Q
Sbjct: 66 DALNVLMAMNIISKEKKEIKWIGLPTNSAQ 95
>pdb|1FJ2|A Chain A, Crystal Structure Of The Human Acyl Protein Thioesterase
1 At 1.5 A Resolution
pdb|1FJ2|B Chain B, Crystal Structure Of The Human Acyl Protein Thioesterase
1 At 1.5 A Resolution
Length = 232
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 16 EYSPEPLPATVKYAKKRSSA-----GLGDEGGAYKRSREKASKGLRHFSMK-VCEKVRRK 69
E+ PLPA V A+K ++A GLGD G + +A G+R +K +C +
Sbjct: 6 EFMSTPLPAIVPAARKATAAVIFLHGLGDTGHGWA----EAFAGIRSSHIKYICPHAPVR 61
Query: 70 GVTTYNEVA 78
VT VA
Sbjct: 62 PVTLNMNVA 70
>pdb|3MT0|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
Pa17 Pseudomonas Aeruginosa Pao1
Length = 290
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 40 EGGAYKRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQE 84
EG A KR++ A H + VCEK RR N++A EL +E
Sbjct: 20 EGLALKRAQLIAGVTQSHLHLLVCEK-RRDHSAALNDLAQELREE 63
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 228 EDLQEAKRLVAPCMEKYVNQIAYND 252
++L +A+RL+ P +KY N+I++ D
Sbjct: 150 QNLDKARRLIWPIKQKYGNKISWAD 174
>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GID|B Chain B, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GLK|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2)
Length = 540
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 217 GMGLDKGEWTEEDLQEAKRLVAP 239
G GL EWTE+DLQ+ KR+ P
Sbjct: 184 GSGLTV-EWTEDDLQQGKRISVP 205
>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With
Soraphen A
Length = 587
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 217 GMGLDKGEWTEEDLQEAKRLVAP 239
G GL EWTE+DLQ+ KR+ P
Sbjct: 200 GSGLTV-EWTEDDLQQGKRISVP 221
>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2
Length = 573
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 224 EWTEEDLQEAKRLVAP 239
EWTE+DLQ+ KR+ P
Sbjct: 200 EWTEDDLQQGKRISVP 215
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 80 ELVQEFSEDHNTASSEQEKKEIKWLGL 106
+LV + HN A E+K +KW+GL
Sbjct: 456 DLVAKLRAFHNEAQVNPERKNLKWIGL 482
>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2
Length = 587
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 217 GMGLDKGEWTEEDLQEAKRLVAP 239
G GL EWTE+DLQ+ KR+ P
Sbjct: 200 GSGLTV-EWTEDDLQQGKRISVP 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,485,691
Number of Sequences: 62578
Number of extensions: 279784
Number of successful extensions: 536
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 11
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)