BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9354
(308 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14186|TFDP1_HUMAN Transcription factor Dp-1 OS=Homo sapiens GN=TFDP1 PE=1 SV=1
Length = 410
Score = 241 bits (614), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 126/237 (53%), Positives = 158/237 (66%), Gaps = 28/237 (11%)
Query: 41 GGAYKRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFS--EDH---NTASSE 95
G R EK KGLRHFSMKVCEKV+RKG T+YNEVADELV EFS ++H N ++ +
Sbjct: 102 AGKRNRKGEKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHILPNESAYD 161
Query: 96 Q----------------------EKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTR 133
Q EKKEIKW+GLPTNS QE NL ER++ ++RI QK
Sbjct: 162 QKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQS 221
Query: 134 HLHDLLLQQISLKKLIQKNIDSEKIHGEPAP-SSAIQLPFLIVSTDKKTVIDCSMSNDKT 192
L +L+LQQI+ K L+Q+N +E+ P P +S I LPF+IV+T KKTVIDCS+SNDK
Sbjct: 222 QLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKF 281
Query: 193 EYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA 249
EYLF FDN FEIHDDIE+LKRMG+ GL+ G + EDL+ A+ LV +E YV ++A
Sbjct: 282 EYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSAEDLKMARSLVPKALEPYVTEMA 338
>sp|Q08639|TFDP1_MOUSE Transcription factor Dp-1 OS=Mus musculus GN=Tfdp1 PE=1 SV=1
Length = 410
Score = 240 bits (613), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 125/237 (52%), Positives = 158/237 (66%), Gaps = 28/237 (11%)
Query: 41 GGAYKRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFS--EDH---NTASSE 95
G R EK KGLRHFSMKVCEKV+RKG T+YNEVADELV EFS ++H N ++ +
Sbjct: 102 AGKRNRKGEKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHILPNESAYD 161
Query: 96 Q----------------------EKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTR 133
Q EKKEIKW+GLPTNS QE NL ER++ ++RI QK
Sbjct: 162 QKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQS 221
Query: 134 HLHDLLLQQISLKKLIQKNIDSEK-IHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKT 192
L +L+LQQI+ K L+Q+N +E+ P P+S I LPF+IV+T +KTVIDCS+SNDK
Sbjct: 222 QLQELILQQIAFKNLVQRNRQAEQQARRPPPPNSVIHLPFIIVNTSRKTVIDCSISNDKF 281
Query: 193 EYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA 249
EYLF FDN FEIHDDIE+LKRMG+ GL+ G + EDL+ A+ LV +E YV ++A
Sbjct: 282 EYLFNFDNTFEIHDDIEVLKRMGMACGLESGNCSAEDLKVARSLVPKALEPYVTEMA 338
>sp|Q17QZ4|TFDP1_BOVIN Transcription factor Dp-1 OS=Bos taurus GN=TFDP1 PE=2 SV=1
Length = 410
Score = 238 bits (607), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 125/237 (52%), Positives = 154/237 (64%), Gaps = 28/237 (11%)
Query: 41 GGAYKRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSE-DHNTASSE---- 95
G R EK KGLRHFSMKVCEKV+RKG T+YNEVADELV EFS D + SE
Sbjct: 102 AGKRNRKGEKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADSHILPSESAYD 161
Query: 96 ----------------------QEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTR 133
+EKKEIKW+GLPTNS QE +L ER++ ++RI QK
Sbjct: 162 QKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQSLEVERQRRLERIKQKQS 221
Query: 134 HLHDLLLQQISLKKLIQKNIDSEKIHGEPAP-SSAIQLPFLIVSTDKKTVIDCSMSNDKT 192
L +L+LQQI+ K L+Q+N E+ P P +S I LPF+IV+T KKTVIDCS+SNDK
Sbjct: 222 QLQELILQQIAFKNLVQRNRQVEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKF 281
Query: 193 EYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA 249
EYLF FDN FEIHDDIE+LKRMG+ GL+ G + EDL+ A+ LV +E YV ++A
Sbjct: 282 EYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSPEDLRVARSLVPKALEPYVTEMA 338
>sp|Q14188|TFDP2_HUMAN Transcription factor Dp-2 OS=Homo sapiens GN=TFDP2 PE=1 SV=2
Length = 446
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/310 (45%), Positives = 190/310 (61%), Gaps = 47/310 (15%)
Query: 6 SGRYVVASPVEYSPEPLPAT----------VKYAKKRSSAGLGDEGGAYKRSR--EKASK 53
SG ++ SP Y+P P T V +KR+ + + KRS+ +K K
Sbjct: 73 SGSVLIGSP--YTPAPAMVTQTHIAEATGWVPGDRKRARKFIDSDFSESKRSKKGDKNGK 130
Query: 54 GLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDHNTASSE------------------ 95
GLRHFSMKVCEKV+RKG T+YNEVADELV EF+ +N +++
Sbjct: 131 GLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNV 190
Query: 96 --------QEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKK 147
+EKKEIKW+GLPTNS QE NL E+++ I+RI QK L +LLLQQI+ K
Sbjct: 191 LMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQELLLQQIAFKN 250
Query: 148 LIQKNIDSEKIH-GEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHD 206
L+Q+N +E+ + G PA +S IQLPF+I++T +KTVIDCS+S+DK EYLF FDN FEIHD
Sbjct: 251 LVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISSDKFEYLFNFDNTFEIHD 310
Query: 207 DIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA-----YNDGLLAEEDDS 261
DIE+LKRMG+ GL+ G+ + EDL+ AK LV +E Y+ I+ N GLL S
Sbjct: 311 DIEVLKRMGMSFGLESGKCSLEDLKLAKSLVPKALEGYITDISTGPSWLNQGLLLNSTQS 370
Query: 262 ML-LDDESGS 270
+ LD +G+
Sbjct: 371 VSNLDLTTGA 380
>sp|Q24318|TFDP_DROME Transcription factor Dp OS=Drosophila melanogaster GN=Dp PE=1 SV=2
Length = 445
Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/251 (45%), Positives = 155/251 (61%), Gaps = 27/251 (10%)
Query: 45 KRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQE----FSEDHNTASSE----- 95
KR +KA KGLRHFSMKVCEKV KG TTYNEVAD+LV E + D+N
Sbjct: 160 KRKPDKAGKGLRHFSMKVCEKVEEKGKTTYNEVADDLVSEEMKNNAYDNNCDQKNIRRRV 219
Query: 96 --------------QEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDLLLQ 141
++KKEI+W+GLP NS + L L +E Q +RI QK L ++++Q
Sbjct: 220 YDALNVLMAINVISKDKKEIRWIGLPANSTETFLALEEENCQRRERIKQKNEMLREMIMQ 279
Query: 142 QISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNK 201
++ K L+++N +E P+P+++IQLPF+IV+T K T I+CS++NDK+EY+F FD
Sbjct: 280 HVAFKGLVERNKRNESQGVVPSPNASIQLPFIIVNTHKSTKINCSVTNDKSEYIFKFDKT 339
Query: 202 FEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIAYNDGLLAEEDDS 261
FE+HDDIE+LKRMG +GLDKGE T E+++ K V P + KYV AY G E +
Sbjct: 340 FEMHDDIEVLKRMGFLLGLDKGECTPENIERVKSWVPPNLAKYVE--AYGTGKTGE--NM 395
Query: 262 MLLDDESGSFD 272
DDE F+
Sbjct: 396 YESDDEDNEFN 406
>sp|Q64163|TFDP2_MOUSE Transcription factor Dp-2 OS=Mus musculus GN=Tfdp2 PE=1 SV=2
Length = 446
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 136/310 (43%), Positives = 184/310 (59%), Gaps = 47/310 (15%)
Query: 6 SGRYVVASPVEYSPEPLPAT----------VKYAKKRSSAGLGDEGGAYKRSR--EKASK 53
SG ++ +P Y+P P T V +KR+ + + KRS+ +K K
Sbjct: 73 SGSVLIGNP--YTPAPAMVTQTHIAEAAGWVPSDRKRAREFIDSDFSESKRSKKGDKNGK 130
Query: 54 GLRHFSMKVCEKVRRKGVTTYNEVADELVQEF--SEDHNTASSEQEKKEIKWL------- 104
GLRHFSMKVCEKV+RKG T+YNEVADELV EF S +H A S +++ I+
Sbjct: 131 GLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQENIRRRVYDALNV 190
Query: 105 --------GLPT---------NSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKK 147
LPT NS QE NL E+++ I+RI QK L +LLLQQI+ K
Sbjct: 191 LMAMNIISSLPTGKKRNQVDCNSAQECQNLEIEKQRRIERIKQKRAQLQELLLQQIAFKN 250
Query: 148 LIQKNIDSEKIH-GEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHD 206
L+Q+N +E+ + G PA +S IQLPF+I++T +KTVIDCS+S+DK EYLF FDN FEIHD
Sbjct: 251 LVQRNRQNEQQNQGPPAVNSTIQLPFIIINTSRKTVIDCSISSDKFEYLFNFDNTFEIHD 310
Query: 207 DIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA-----YNDGLLAEEDDS 261
DIE+LKRMG+ GL+ G+ + EDL+ A+ LV +E Y+ I+ N GLL S
Sbjct: 311 DIEVLKRMGMSFGLESGKCSLEDLKIARSLVPKALEGYITDISTGPSWLNQGLLLNSTQS 370
Query: 262 ML-LDDESGS 270
+ LD +G+
Sbjct: 371 VSNLDPTTGA 380
>sp|Q5H9I0|TFDP3_HUMAN Transcription factor Dp family member 3 OS=Homo sapiens GN=TFDP3
PE=1 SV=1
Length = 405
Score = 193 bits (490), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/275 (40%), Positives = 155/275 (56%), Gaps = 30/275 (10%)
Query: 4 GMSGRYVVAS-PVEYSPEPLPATVKYAKKRSSAGLGDEGGAYKRSREKASKGLRHFSMKV 62
GM R ++ PV SP P P+T ++ + S G + R EK GL SMKV
Sbjct: 60 GMPQRPAASNIPVVGSPNP-PSTHFASQNQHSYSSPPWAGQHNRKGEKNGMGLCRLSMKV 118
Query: 63 CEKVRRKGVTTYNEVADELVQEFSEDHNTASSEQ-------------------------- 96
E V+RKG T+ EV ELV +F N AS +
Sbjct: 119 WETVQRKGTTSCQEVVGELVAKFRAASNHASPNESAYDVKNIKRRTYDALNVLMAMNIIS 178
Query: 97 -EKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKN-ID 154
EKK+IKW+GL TNS Q NL ER++ ++RI QK L L+LQQI+ K L+ +N
Sbjct: 179 REKKKIKWIGLTTNSAQNCQNLRVERQKRLERIKQKQSELQQLILQQIAFKNLVLRNQYV 238
Query: 155 SEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRM 214
E++ P P+S I +PF+I+S+ KKTVI+CS+S+DK+EYLF F++ FEIHDD E+L M
Sbjct: 239 EEQVSQRPLPNSVIHVPFIIISSSKKTVINCSISDDKSEYLFKFNSSFEIHDDTEVLMWM 298
Query: 215 GLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIA 249
G+ GL+ G + EDL+ A+ LV +E YV ++A
Sbjct: 299 GMTFGLESGSCSAEDLKMARNLVPKALEPYVTEMA 333
>sp|Q22703|TFDP1_CAEEL Transcription factor dpl-1 OS=Caenorhabditis elegans GN=dpl-1 PE=1
SV=2
Length = 598
Score = 166 bits (419), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 136/227 (59%), Gaps = 29/227 (12%)
Query: 54 GLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDH-----NTASSE------------- 95
GLRHFS KVCEKV+ KG+T YNEVADELV ++ +++ + E
Sbjct: 72 GLRHFSTKVCEKVKEKGLTNYNEVADELVADYFQNNLIKQIDVVKQEYDMKNIRRRVYDA 131
Query: 96 -----------QEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQIS 144
+ KK+I+W+GLP ++ QE L +E+ + I+ K + L +++LQ +S
Sbjct: 132 LNVLLAMNIITKSKKDIRWIGLPASASQEISRLEEEKSRREASISSKKQALEEMVLQIVS 191
Query: 145 LKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEI 204
K L+++N +E +G P + + LPFLI++TDK+ ++CS+S+DK+E+LF FD KFEI
Sbjct: 192 YKNLVERNRKNEHKNGRPENDTVLHLPFLIINTDKEANVECSVSSDKSEFLFSFDKKFEI 251
Query: 205 HDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIAYN 251
HDD EILK++ L L+ T E+++ AK + + YV++I N
Sbjct: 252 HDDFEILKKLNLACSLETTNPTAEEVKTAKSFLPTLHQHYVDEIIAN 298
>sp|Q9FNY2|DPB_ARATH Transcription factor-like protein DPB OS=Arabidopsis thaliana
GN=DPB PE=1 SV=1
Length = 385
Score = 121 bits (303), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 109/217 (50%), Gaps = 40/217 (18%)
Query: 35 AGLGDEGGAYKRSR-------EKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSE 87
AG G K+ R +K +GLR FSMKVCEKV KG TTYNEVADELV EF+
Sbjct: 77 AGSQGASGVKKKKRGQRAAGPDKTGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFAL 136
Query: 88 DHNTASS----------------------------EQEKKEIKWLGLPTNSLQESLNLNK 119
+N +S ++KKEI+W GLP SL + L
Sbjct: 137 PNNDGTSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTSLSDIEELKN 196
Query: 120 ERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEP-APSSAIQLPFLIVSTD 178
ER L RI +KT + +L Q + L+ LIQ+N E ++ APS + LPF++V T
Sbjct: 197 ERLSLRNRIEKKTAYSQELEEQYVGLQNLIQRN---EHLYSSGNAPSGGVALPFILVQTR 253
Query: 179 KKTVIDCSMSNDKTEYLFVFDN-KFEIHDDIEILKRM 214
++ +S D F F++ FE+HDD +LK M
Sbjct: 254 PHATVEVEISEDMQLVHFDFNSTPFELHDDNFVLKTM 290
>sp|Q9FNY3|DPA_ARATH Transcription factor-like protein DPA OS=Arabidopsis thaliana
GN=DPA PE=1 SV=1
Length = 292
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 33/206 (16%)
Query: 40 EGGAYKRSREKASKG-LRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDHNTASS---- 94
E G+ K+ + + S G LR FS+ VC+K+ K +TTY EVADE++ +F+ A
Sbjct: 38 EIGSEKKGQSRTSGGGLRQFSVMVCQKLEAKKITTYKEVADEIISDFATIKQNAEKPLNE 97
Query: 95 -------------------------EQEKKEIKWLGLPTNSLQESLNLNKERKQLIQRIN 129
++KKEI+W GLP ++ + +R +++ +
Sbjct: 98 NEYNEKNIRRRVYDALNVFMALDIIARDKKEIRWKGLPITCKKDVEEVKMDRNKVMSSVQ 157
Query: 130 QKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSN 189
+K L +L + SL+ L+ +N E + P+ LPF+++ T+ V++ +S
Sbjct: 158 KKAAFLKELREKVSSLESLMSRN--QEMVVKTQGPAEGFTLPFILLETNPHAVVEIEISE 215
Query: 190 DKTEYLFVFDNK-FEIHDDIEILKRM 214
D F++ F +HDD ILK M
Sbjct: 216 DMQLVHLDFNSTPFSVHDDAYILKLM 241
>sp|P57156|ARGC_BUCAI N-acetyl-gamma-glutamyl-phosphate reductase OS=Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain APS) GN=argC PE=3
SV=1
Length = 334
Score = 38.1 bits (87), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 17/131 (12%)
Query: 112 QESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLP 171
+ SLN++K L ++Q+ +++ DL I LI+KNID+ + + S ++ +P
Sbjct: 36 KNSLNIDK----LFSDVHQQFKNIVDLRFDTIRNCTLIKKNIDAVFLATDHRVSHSL-VP 90
Query: 172 FLIVSTDKKTVIDCSMS---NDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEE 228
F + S V D S S N+K YL D +H+ E+LK G+ EW +E
Sbjct: 91 FFLSSNC--IVFDLSASYRMNNKKVYL---DYYGFVHEYEELLKNSVYGL----AEWEQE 141
Query: 229 DLQEAKRLVAP 239
+++A + P
Sbjct: 142 KIKKANLIALP 152
>sp|B8D8K6|ARGC_BUCA5 N-acetyl-gamma-glutamyl-phosphate reductase OS=Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain 5A) GN=argC PE=3 SV=1
Length = 334
Score = 38.1 bits (87), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 17/131 (12%)
Query: 112 QESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLP 171
+ SLN++K L ++Q+ +++ DL I LI+KNID+ + + S ++ +P
Sbjct: 36 KNSLNIDK----LFSDVHQQFKNIVDLRFDTIRNCTLIKKNIDAVFLATDHRVSHSL-VP 90
Query: 172 FLIVSTDKKTVIDCSMS---NDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEE 228
F + S V D S S N+K YL D +H+ E+LK G+ EW +E
Sbjct: 91 FFLSSNC--IVFDLSASYRMNNKKVYL---DYYGFVHEYEELLKNSVYGL----AEWEQE 141
Query: 229 DLQEAKRLVAP 239
+++A + P
Sbjct: 142 KIKKANLIALP 152
>sp|B8D6W0|ARGC_BUCAT N-acetyl-gamma-glutamyl-phosphate reductase OS=Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain Tuc7) GN=argC PE=3
SV=1
Length = 334
Score = 37.7 bits (86), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 17/131 (12%)
Query: 112 QESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLP 171
+ SLN++K L ++Q+ +++ DL I LI+KNID+ + + S ++ +P
Sbjct: 36 KNSLNIDK----LFSDVHQQFKNIVDLRFDTIRNCTLIKKNIDAVFLATDHRVSHSL-VP 90
Query: 172 FLIVSTDKKTVIDCSMS---NDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEE 228
F + S V D S S N+K YL D +H+ E+LK G+ EW +E
Sbjct: 91 FFLSSNC--IVFDLSASYRMNNKKVYL---DYYGFVHEYEELLKNSVYGL----AEWEQE 141
Query: 229 DLQEAKRLVAP 239
+++A + P
Sbjct: 142 KIKKANLIALP 152
>sp|P33330|SERC_YEAST Phosphoserine aminotransferase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SER1 PE=1 SV=1
Length = 395
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 220 LDKGEWTEEDLQEAKRLVAPCMEKYVNQIAYNDGLLAEEDDSMLLDDESGSFDSSQITI- 278
L G W+++ +EAKRL P E N YN+G + D L +D+ S + +
Sbjct: 108 LVTGSWSQKSFEEAKRLHVPA-EVIFNAKDYNNGKFGKIPDESLWEDKIKGKAFSYVYLC 166
Query: 279 --ETV-------MPEEVMSVSGSEGESDLSSDI 302
ETV +P+ +++ E +DLSSDI
Sbjct: 167 ENETVHGVEWPELPKCLVNDPNIEIVADLSSDI 199
>sp|A3D8T3|Y3671_SHEB5 UPF0042 nucleotide-binding protein Sbal_3671 OS=Shewanella baltica
(strain OS155 / ATCC BAA-1091) GN=Sbal_3671 PE=3 SV=1
Length = 284
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 31/173 (17%)
Query: 95 EQEKKEIKWLG-LPTNSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLK------- 146
EQ+K +K L LP ++ S LN K L++R ++ TR LH L Q+SL+
Sbjct: 62 EQDKVLVKQLASLPPDTELTSFFLNSSDKILLKRYSE-TRRLHPLSKSQVSLQEAIKLEG 120
Query: 147 -------KLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDK----TEYL 195
KL+ ID+ ++ Q+ L+ S DK+ VI+ K TE
Sbjct: 121 KLLEPMSKLVDHYIDTSNLNIYDLSDQVRQI--LLGSVDKELVINFESFGFKHGMPTEAD 178
Query: 196 FVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQI 248
F+FD +F + E+ R G+ E+ P + K++ QI
Sbjct: 179 FMFDVRFLPNPHWELALRPLTGLDEPVAEFLNRQ---------PLVNKFIWQI 222
>sp|B8E9K8|Y704_SHEB2 UPF0042 nucleotide-binding protein Sbal223_0704 OS=Shewanella
baltica (strain OS223) GN=Sbal223_0704 PE=3 SV=1
Length = 284
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 31/173 (17%)
Query: 95 EQEKKEIKWLG-LPTNSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLK------- 146
EQ+K +K L LP ++ S LN K L++R ++ TR LH L Q+SL+
Sbjct: 62 EQDKVLVKQLASLPPDTELTSFFLNSSDKILLKRYSE-TRRLHPLSKSQVSLQEAIKLEG 120
Query: 147 -------KLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDK----TEYL 195
KL+ ID+ ++ Q+ L+ S DK+ VI+ K TE
Sbjct: 121 KLLEPMSKLVDHYIDTSNLNIYDLSDQVRQI--LLGSVDKELVINFESFGFKHGMPTEAD 178
Query: 196 FVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQI 248
F+FD +F + E+ R G+ E+ P + K++ QI
Sbjct: 179 FMFDVRFLPNPHWELALRPLTGLDEPVAEFLNRQ---------PLVNKFIWQI 222
>sp|A6WJ51|Y683_SHEB8 UPF0042 nucleotide-binding protein Shew185_0683 OS=Shewanella
baltica (strain OS185) GN=Shew185_0683 PE=3 SV=1
Length = 284
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 31/173 (17%)
Query: 95 EQEKKEIKWLG-LPTNSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLK------- 146
EQ+K +K L LP ++ S LN K L++R ++ TR LH L Q+SL+
Sbjct: 62 EQDKVLVKQLASLPPDTELTSFFLNSSDKILLKRYSE-TRRLHPLSKSQVSLQEAIKLEG 120
Query: 147 -------KLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDK----TEYL 195
KL+ ID+ ++ Q+ L+ S DK+ VI+ K TE
Sbjct: 121 KLLEPMSKLVDHYIDTSNLNIYDLSDQVRQI--LLGSVDKELVINFESFGFKHGMPTEAD 178
Query: 196 FVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQI 248
F+FD +F + E+ R G+ E+ P + K++ QI
Sbjct: 179 FMFDVRFLPNPHWELALRPLTGLDEPVAEFLNRQ---------PLVNKFIWQI 222
>sp|A9L0Z2|Y713_SHEB9 UPF0042 nucleotide-binding protein Sbal195_0713 OS=Shewanella
baltica (strain OS195) GN=Sbal195_0713 PE=3 SV=1
Length = 284
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 31/173 (17%)
Query: 95 EQEKKEIKWLG-LPTNSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLK------- 146
EQ+K +K L LP ++ S LN K L++R ++ TR LH L Q+SL+
Sbjct: 62 EQDKVLVKQLASLPPDTELTSFFLNSSDKILLKRYSE-TRRLHPLSKSQVSLQEAIKLEG 120
Query: 147 -------KLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDK----TEYL 195
KL+ ID+ ++ Q+ L+ S DK+ VI+ K TE
Sbjct: 121 KLLEPMSKLVDHYIDTSNLNIYDLSDQVRQI--LLGSVDKELVINFESFGFKHGMPTEAD 178
Query: 196 FVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQI 248
F+FD +F + E+ R G+ E+ P + K++ QI
Sbjct: 179 FMFDVRFLPNPHWELALRPLTGLDEPVAEFLNRQ---------PLVNKFIWQI 222
>sp|A6LPD9|CARB_CLOB8 Carbamoyl-phosphate synthase large chain OS=Clostridium
beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=carB
PE=3 SV=1
Length = 1069
Score = 31.6 bits (70), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 209 EILKRMGLGMGLDKGEWT-EEDLQEAKRLVAPCM 241
E+L+R+G+ KG W+ EE L+EAKRL P +
Sbjct: 675 ELLERLGISRPKGKGIWSLEEGLEEAKRLKFPVL 708
>sp|Q5FIY7|SYFB_LACAC Phenylalanine--tRNA ligase beta subunit OS=Lactobacillus
acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM)
GN=pheT PE=3 SV=1
Length = 804
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 109 NSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKL-IQKNIDSEKIHGEPAPSSA 167
N LQ+ LNL++E L ++I + + D+ + LKKL + K ID E + G +
Sbjct: 6 NWLQDFLNLDQEPHALAEKITRTGVEIADVKHPEEGLKKLVVGKVIDCEGVEG-----TH 60
Query: 168 IQLPFLIVSTDKKTVIDCSMSN 189
+ L + V D+ I C N
Sbjct: 61 LHLTHVDVGEDEPLQIVCGAPN 82
>sp|P75405|Y376_MYCPN Uncharacterized protein MPN_376 OS=Mycoplasma pneumoniae (strain ATCC
29342 / M129) GN=MPN_376 PE=4 SV=1
Length = 1140
Score = 31.2 bits (69), Expect = 10.0, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 94 SEQEKKEIKWLGLPTN-SLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKN 152
++++K +K L L +N +L + NL + +I +I ++ + + L+ ++ KN
Sbjct: 901 NKEDKNNLK-LRLTSNFTLDKKGNLEVKDPSVINQIVEEAKGYNVLVSEEKGDDPESDKN 959
Query: 153 IDSEKIHGEPAPSSAIQLPFLIVSTDKKTVIDCSMSNDKTEYLFVFD----NKFEIHDDI 208
I + P S+ I+LP+ IV+ KT D ++ K VFD N FE + +
Sbjct: 960 IFKITLTTNPEQSTVIKLPYWIVTKKSKTNKDGTVREQKN---LVFDFSNLNNFEYNTVV 1016
Query: 209 EIL 211
+L
Sbjct: 1017 SLL 1019
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,186,661
Number of Sequences: 539616
Number of extensions: 4909815
Number of successful extensions: 14542
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 14497
Number of HSP's gapped (non-prelim): 112
length of query: 308
length of database: 191,569,459
effective HSP length: 117
effective length of query: 191
effective length of database: 128,434,387
effective search space: 24530967917
effective search space used: 24530967917
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)