Query psy9354
Match_columns 308
No_of_seqs 122 out of 136
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 17:00:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aze_A Transcription factor DP 100.0 5.9E-59 2E-63 403.4 17.4 146 109-254 2-148 (155)
2 1cf7_B Protein (transcription 99.9 3.8E-25 1.3E-29 178.8 4.5 68 45-112 2-95 (95)
3 1cf7_A Protein (transcription 96.5 0.00094 3.2E-08 51.5 2.0 58 50-107 7-75 (76)
4 3nmd_A CGMP dependent protein 47.7 55 0.0019 25.0 6.4 39 113-151 20-58 (72)
5 3u06_A Protein claret segregat 33.1 1.3E+02 0.0045 29.0 8.1 32 113-144 11-42 (412)
6 2yy0_A C-MYC-binding protein; 29.5 1.1E+02 0.0036 21.8 5.1 32 110-141 17-48 (53)
7 3gva_A Alkyltransferase-like p 29.3 32 0.0011 28.1 2.7 25 57-81 5-32 (116)
8 1qgp_A Protein (double strande 23.8 48 0.0017 24.4 2.6 23 60-82 17-42 (77)
9 4etp_A Kinesin-like protein KA 23.1 4.4E+02 0.015 25.1 9.8 36 112-147 10-45 (403)
10 3ajw_A Flagellar FLIJ protein; 21.5 2.6E+02 0.0089 21.9 6.7 41 117-157 86-126 (150)
11 1wrj_A Methylated-DNA--protein 21.3 53 0.0018 28.0 2.7 29 53-81 67-98 (156)
12 1qbj_A Protein (double-strande 21.3 63 0.0022 24.3 2.8 23 60-82 13-38 (81)
13 2kif_A O6-methylguanine-DNA me 20.9 65 0.0022 25.9 3.0 25 57-81 3-30 (108)
14 3uhm_A UDP-3-O-[3-hydroxymyris 20.2 1.9E+02 0.0064 27.3 6.4 42 178-219 149-208 (299)
No 1
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=100.00 E-value=5.9e-59 Score=403.42 Aligned_cols=146 Identities=52% Similarity=0.817 Sum_probs=140.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh-cCCCCCCCccccceEEEEcCCCCeEEeee
Q psy9354 109 NSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKI-HGEPAPSSAIQLPFLIVSTDKKTVIDCSM 187 (308)
Q Consensus 109 ns~qe~~~Le~ek~k~~erIkqKk~~LqELi~Q~iA~KnLV~RNk~~e~~-~~~~~~~~~I~LPFIlV~Tsk~t~IdCei 187 (308)
||+|+|++|+.|++++++||++|+++||||++|++||||||+||+++++. .++|+++++|+||||||+|+++|+|+|+|
T Consensus 2 ~s~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~~~e~~~~~~~~~~~~I~LPFIlV~T~k~t~I~ceI 81 (155)
T 2aze_A 2 EFAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSI 81 (155)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCCGGGEEESSCEEEEEESSCCEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCEeecCEEEEEcCCCCEEEEEE
Confidence 89999999999999999999999999999999999999999999999984 44567789999999999999999999999
Q ss_pred ecCcceEEEEcCCceeeeccHHHHHHhhccCCCCCCCCCHHHHHHHHhccchhhHHHHHHHhhcCCC
Q psy9354 188 SNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQIAYNDGL 254 (308)
Q Consensus 188 S~Dk~ey~F~F~~~FEIhDD~eILK~Mgl~~gLe~g~~s~edl~~ak~lvPk~l~~yv~~~~~~~~~ 254 (308)
|+|+++|+|+||+|||||||++|||+|||+|||++|+||+||++.||+|||++|++||++||+|+..
T Consensus 82 SeD~~~~~F~F~~pFEIHDD~eVLK~mgl~~gle~g~cs~e~l~~~ks~vP~~l~~yv~~~a~g~~~ 148 (155)
T 2aze_A 82 SNDKFEYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSAEDLKMARSLVPKALEPYVTEMAQGTVG 148 (155)
T ss_dssp CTTSSEEEEEESSCEEEEEHHHHHHHTTTTTTGGGTCCCHHHHHHHHHTSCGGGHHHHHHHHHTTTC
T ss_pred ecCccEEEEeCCCCeeccChHHHHHHHHHHhCCCCCCCCHHHHHHHHHhCChhhhhhHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999854
No 2
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.90 E-value=3.8e-25 Score=178.76 Aligned_cols=68 Identities=65% Similarity=1.022 Sum_probs=52.5
Q ss_pred cccccccCcchhhhhHHHHHHHhhcCCcchHHHHHHHHHhhhccc--------------------------CcccccccC
Q psy9354 45 KRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDH--------------------------NTASSEQEK 98 (308)
Q Consensus 45 rk~~ek~~kGLRhfSmKVcEKVqeKg~TTYnEVADELV~E~~~~~--------------------------~i~IIsKeK 98 (308)
+|+++|+++|||||||+|||||+++++|||+|||||||+||.++. +++||+|+|
T Consensus 2 ~~~~~k~~~GLr~fS~kVcekVk~k~~Tty~eVAdeLV~e~~~~~~~~~~~~~~d~~~~rRRvYD~~NVl~a~gii~K~k 81 (95)
T 1cf7_B 2 SKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISKEK 81 (95)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSEECHHHHHHHHHHHHHTCTTCCGGGSHHHHHHHHHHHHHHHHHHHHTTSBCCCS
T ss_pred CccccccCccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcccccCccchhcccccchhhHHHHHHHHHHhcceecCC
Confidence 589999999999999999999999999999999999999997642 257999999
Q ss_pred ccEEEecCCCCCHH
Q psy9354 99 KEIKWLGLPTNSLQ 112 (308)
Q Consensus 99 KeIkWiGLPtns~q 112 (308)
|.|+|+|+|++++|
T Consensus 82 ~~i~W~g~~~~~~~ 95 (95)
T 1cf7_B 82 KEIKWIGLPTNSAQ 95 (95)
T ss_dssp SCEEBCCCC-----
T ss_pred CEEEEecCCccccC
Confidence 99999999999865
No 3
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=96.51 E-value=0.00094 Score=51.47 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=43.2
Q ss_pred ccCcchhhhhHHHHHHHhh--cCCcchHHHHHHHHH-hhhcc----c---Cccccccc-CccEEEecCC
Q psy9354 50 KASKGLRHFSMKVCEKVRR--KGVTTYNEVADELVQ-EFSED----H---NTASSEQE-KKEIKWLGLP 107 (308)
Q Consensus 50 k~~kGLRhfSmKVcEKVqe--Kg~TTYnEVADELV~-E~~~~----~---~i~IIsKe-KKeIkWiGLP 107 (308)
+..++|..++.++++.+++ .+..+++++|++|.- +-.-- | .+++|+|. |..|+|+|+.
T Consensus 7 R~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~k~~~~W~G~~ 75 (76)
T 1cf7_A 7 RHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVG 75 (76)
T ss_dssp TTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEEEC---
T ss_pred CccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhcceeecCCCcEEEeCCC
Confidence 4567999999999999997 578999999999965 21100 0 46899996 7789999985
No 4
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=47.73 E-value=55 Score=25.01 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9354 113 ESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQK 151 (308)
Q Consensus 113 e~~~Le~ek~k~~erIkqKk~~LqELi~Q~iA~KnLV~R 151 (308)
.+..|+...+++.+.|.+|.+.+.+|..+....-.+|+.
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~ 58 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQM 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778788888888888888888877777666666653
No 5
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=33.06 E-value=1.3e+02 Score=29.04 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9354 113 ESLNLNKERKQLIQRINQKTRHLHDLLLQQIS 144 (308)
Q Consensus 113 e~~~Le~ek~k~~erIkqKk~~LqELi~Q~iA 144 (308)
+..+|++.++++++.+++-++.++++..|...
T Consensus 11 el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 11 EVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666666665555433
No 6
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.51 E-value=1.1e+02 Score=21.75 Aligned_cols=32 Identities=13% Similarity=0.023 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9354 110 SLQESLNLNKERKQLIQRINQKTRHLHDLLLQ 141 (308)
Q Consensus 110 s~qe~~~Le~ek~k~~erIkqKk~~LqELi~Q 141 (308)
...+.+.|+.|...++.++..=+++++||-.+
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688889999999988888877777776554
No 7
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=29.26 E-value=32 Score=28.10 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=20.8
Q ss_pred hhhHHHHHHHhhc---CCcchHHHHHHH
Q psy9354 57 HFSMKVCEKVRRK---GVTTYNEVADEL 81 (308)
Q Consensus 57 hfSmKVcEKVqeK---g~TTYnEVADEL 81 (308)
-|-.+|++.|++= .++||.+||..|
T Consensus 5 ~Fq~~Vw~~l~~IP~G~v~TYg~IA~~~ 32 (116)
T 3gva_A 5 EFYTKVYDAVCEIPYGKVSTYGEIARYV 32 (116)
T ss_dssp HHHHHHHHHHTTSCTTCBBCHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCeEeHHHHHHHh
Confidence 4778899988764 789999999875
No 8
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=23.80 E-value=48 Score=24.43 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.5
Q ss_pred HHHHHHHhhcC---CcchHHHHHHHH
Q psy9354 60 MKVCEKVRRKG---VTTYNEVADELV 82 (308)
Q Consensus 60 mKVcEKVqeKg---~TTYnEVADELV 82 (308)
.+|++.+++.+ ..|+.|+|..|=
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lg 42 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLG 42 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHC
Confidence 67899999999 999999999874
No 9
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.12 E-value=4.4e+02 Score=25.10 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9354 112 QESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKK 147 (308)
Q Consensus 112 qe~~~Le~ek~k~~erIkqKk~~LqELi~Q~iA~Kn 147 (308)
+++.+|+.+...+.+.|++-+..+++|..+...-..
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 45 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEET 45 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777666554443
No 10
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=21.54 E-value=2.6e+02 Score=21.89 Aligned_cols=41 Identities=7% Similarity=0.072 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q psy9354 117 LNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEK 157 (308)
Q Consensus 117 Le~ek~k~~erIkqKk~~LqELi~Q~iA~KnLV~RNk~~e~ 157 (308)
.+.........+..++..|++-.....+|..|.+|-.....
T Consensus 86 q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~~~~~~ 126 (150)
T 3ajw_A 86 HRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTAAAL 126 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678888999999999999999999999988665443
No 11
>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii}
Probab=21.27 E-value=53 Score=27.95 Aligned_cols=29 Identities=38% Similarity=0.611 Sum_probs=24.2
Q ss_pred cchhhhhHHHHHHHhhc---CCcchHHHHHHH
Q psy9354 53 KGLRHFSMKVCEKVRRK---GVTTYNEVADEL 81 (308)
Q Consensus 53 kGLRhfSmKVcEKVqeK---g~TTYnEVADEL 81 (308)
.|+-.|-.+|++.|..= .++||.+||..+
T Consensus 67 ~g~t~fq~~V~~~l~~IP~G~~~tYg~iA~~~ 98 (156)
T 1wrj_A 67 KPFNEFRIRVFKEVMRIKWGEVRTYKQVADAV 98 (156)
T ss_dssp TTSCHHHHHHHHHHTTSCTTCCEEHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCCCceEcHHHHHHHh
Confidence 57778999999998764 578999999875
No 12
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=21.27 E-value=63 Score=24.31 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.4
Q ss_pred HHHHHHHhhcC---CcchHHHHHHHH
Q psy9354 60 MKVCEKVRRKG---VTTYNEVADELV 82 (308)
Q Consensus 60 mKVcEKVqeKg---~TTYnEVADELV 82 (308)
.+|++.+++.+ ..|+.|+|.+|=
T Consensus 13 ~~IL~~L~~~~pg~~~t~~eLA~~Lg 38 (81)
T 1qbj_A 13 QRILKFLEELGEGKATTAHDLSGKLG 38 (81)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHC
Confidence 56999999999 999999999874
No 13
>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair methylguanine methyltransferase; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A
Probab=20.86 E-value=65 Score=25.89 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=19.7
Q ss_pred hhhHHHHHHHhhc---CCcchHHHHHHH
Q psy9354 57 HFSMKVCEKVRRK---GVTTYNEVADEL 81 (308)
Q Consensus 57 hfSmKVcEKVqeK---g~TTYnEVADEL 81 (308)
-|-.+|++.|.+= .++||.+||..|
T Consensus 3 ~F~~~V~~~l~~IP~G~v~TYg~iA~~~ 30 (108)
T 2kif_A 3 QFLVQIFAVIHQIPKGKVSTYGEIAKMA 30 (108)
T ss_dssp HHHHHHHHHHTTCCTTCBEEHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcEeHHHHHHHh
Confidence 4777888888763 568999999875
No 14
>3uhm_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; amidohydrolases, anti-bacterial agents, bacteria, catalytic drug design; HET: RFN; 1.26A {Pseudomonas aeruginosa} PDB: 2ves_A* 3u1y_A* 3p3e_A*
Probab=20.20 E-value=1.9e+02 Score=27.28 Aligned_cols=42 Identities=21% Similarity=0.295 Sum_probs=32.8
Q ss_pred CCCCeEEeeeecC-----c--ceEEEEcC-----------CceeeeccHHHHHHhhccCC
Q psy9354 178 DKKTVIDCSMSND-----K--TEYLFVFD-----------NKFEIHDDIEILKRMGLGMG 219 (308)
Q Consensus 178 sk~t~IdCeiS~D-----k--~ey~F~F~-----------~~FEIhDD~eILK~Mgl~~g 219 (308)
...-.|+|.|.=+ + +.|.|+|+ .||-+..|+|-|+++||+.|
T Consensus 149 ~~~~~i~~~IdF~~p~Ig~~~Q~~~~~~~~~~f~~eIa~ARTFgf~~eve~L~~~GLa~G 208 (299)
T 3uhm_A 149 FDGFKVSFEIDFDHPVFRGRTQQASVDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALG 208 (299)
T ss_dssp CSSEEEEEEECCCSGGGTTCCEEEEEECCHHHHHHHTTTCCCEEEGGGHHHHHHHTCCTT
T ss_pred CCCcEEEEEEECCCccCCCcccEEEEEeCHHHHHHhCCCccccccHHHHHHHHHCCcccc
Confidence 3456677777543 3 67888864 58999999999999999988
Done!