RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9354
(308 letters)
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle,
transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Length = 155
Score = 169 bits (429), Expect = 9e-53
Identities = 76/139 (54%), Positives = 100/139 (71%), Gaps = 1/139 (0%)
Query: 112 QESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGE-PAPSSAIQL 170
QE NL ER++ ++RI QK L +L+LQQI+ K L+Q+N +E+ P P+S I L
Sbjct: 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHL 64
Query: 171 PFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDL 230
PF+IV+T KKTVIDCS+SNDK EYLF FDN FEIHDDIE+LKRMG+ GL+ G + EDL
Sbjct: 65 PFIIVNTSKKTVIDCSISNDKFEYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSAEDL 124
Query: 231 QEAKRLVAPCMEKYVNQIA 249
+ A+ LV +E YV ++A
Sbjct: 125 KMARSLVPKALEPYVTEMA 143
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding
domain, cell cycle, transcription/DNA complex; HET: DNA;
2.60A {Homo sapiens} SCOP: a.4.5.17
Length = 95
Score = 80.1 bits (197), Expect = 3e-19
Identities = 45/94 (47%), Positives = 55/94 (58%), Gaps = 26/94 (27%)
Query: 45 KRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDHNTASSEQ-------- 96
+ +K KGLRHFSMKVCEKV+RKG T+YNEVADELV EF+ +N +++
Sbjct: 2 SKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIR 61
Query: 97 ------------------EKKEIKWLGLPTNSLQ 112
EKKEIKW+GLPTNS Q
Sbjct: 62 RRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQ 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 1e-04
Identities = 30/282 (10%), Positives = 82/282 (29%), Gaps = 65/282 (23%)
Query: 10 VVASPVEYSPEPLPATVKYAKKRSSAGLGDEGGAYKRSREKASKGLRHFSMKVCEKVRRK 69
++ ++ P+ LP V R + + R +H + C+K+
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIA----ESIRDGLATWDNWKHVN---CDKLTTI 358
Query: 70 GVTTYNEVADELVQE-------FSEDHNTASSEQEKKEIKWLGLPTNSLQESLNLNKERK 122
++ N + ++ F + + + W + + + +N +
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPT---ILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 123 QLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTV 182
+ ++ + T + + L +L K + +H ++ D +
Sbjct: 416 LVEKQPKESTISIPSIYL------ELKVKLENEYALHRS-----------IV---DHYNI 455
Query: 183 IDCSMSNDKT-----EYLFVFD----NKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEA 233
S+D +Y + E + + + + + L + E+ ++
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-----FLEQKIRHD 510
Query: 234 KRLVAPC---------MEKYVNQIAYNDGLLAEEDDSMLLDD 266
++ Y I ND L++
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDND-----PKYERLVNA 547
Score = 36.8 bits (84), Expect = 0.008
Identities = 39/300 (13%), Positives = 89/300 (29%), Gaps = 95/300 (31%)
Query: 73 TYNEVADELVQEFSEDHNTASSEQEKKEIKWLGLPTNSLQESLNLNKERKQLIQRIN--Q 130
Y ++ F ++ + + K I L+ +E +I +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSI-------------LS-KEEIDHIIMSKDAVS 62
Query: 131 KTRHLHDLLLQQIS------LKKLIQKNID--SEKIHGEP-APS---------------- 165
T L LL + ++++++ N I E PS
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 166 --------------------SAIQL---PFLIVSTDK---KTVIDCSMSND-KTEYLFVF 198
+ ++L +++ KT + + K + F
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 199 D-------NKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCMEKYVNQI--- 248
N +E+L++ L +D + D +L ++ + ++
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQK--LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 249 -AYNDGLLAEEDDSMLLDDESGS-----FD-SSQITIETVMPEEVMSVSGSEGESDLSSD 301
Y + LL +L + + F+ S +I + T ++V + + +S D
Sbjct: 241 KPYENCLL-------VLLNVQNAKAWNAFNLSCKILL-TTRFKQVTDFLSAATTTHISLD 292
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 4e-04
Identities = 38/242 (15%), Positives = 73/242 (30%), Gaps = 72/242 (29%)
Query: 3 SGMSGRYVVAS--PVEYSPEPLPATVKYA----KKRSSAGLGDEGGAYKRSREKASKG-- 54
S R + S +E+ +P + +++ + L + + E +
Sbjct: 2 DAYSTRPLTLSHGSLEHV-LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 55 LRHFSMKVCEKVRRKGVTTYNEVADELVQEFSED-------HNTASS---EQEKKEIK-- 102
+ F V V V +++V + + EF H A+ E + +K
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 103 -WL----------GLPTNSLQESL---NLNKERKQLI-----QRINQKT----RHLHDL- 138
+ P + S + + QL+ Q R L+
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 139 ------LLQQIS--LKKLIQKNIDSEKIHG------------EPAP------SSAIQLPF 172
L++ + L +LI+ +D+EK+ P S I P
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP- 239
Query: 173 LI 174
LI
Sbjct: 240 LI 241
Score = 39.6 bits (92), Expect = 0.001
Identities = 49/262 (18%), Positives = 76/262 (29%), Gaps = 109/262 (41%)
Query: 103 WLGL------PTNSL-----QESLNLNK------------ERKQLIQRINQKTRHLHDLL 139
++G+ P SL ++SL N+ ++Q+ +N+ HL
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 140 LQQISL-------------KKLIQKNIDSEKIHGEPAPSSAIQ--LPFLIVSTDKKTVID 184
+ISL + L N+ K APS Q +PF +++K
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK---APSGLDQSRIPF----SERKLKFS 417
Query: 185 CSMSNDKTEYLFV---FDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQE------AKR 235
+L V F H +L + +DL + AK
Sbjct: 418 -------NRFLPVASPF------HSH--LLV--------PASDLINKDLVKNNVSFNAKD 454
Query: 236 LVAPCMEKYVNQIAYN--DGLLAEEDDSMLLDDESGSFDSS---QITIETVMPEEVMSVS 290
+ P V Y+ DG D L SGS I V E
Sbjct: 455 IQIP-----V----YDTFDG----SD----LRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Query: 291 ----------GSEGESDLSSDI 302
G+ G L+
Sbjct: 498 ATHILDFGPGGASGLGVLTHRN 519
Score = 38.5 bits (89), Expect = 0.003
Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 41/158 (25%)
Query: 16 EYS-------PEPLPATVKYAKKRSSAGLGDEGGAYKRSREKASKGLRHFSMKVCEKVRR 68
EY+ + + V+ R G + + + G ++ M R
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYR--------GMTMQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 69 KGVTTYNEVADELVQEFSEDHNTASSEQEKKEIKWLGLPTNSLQESLNLNKERKQLI--- 125
+ E +V+ + T L E +N N E +Q +
Sbjct: 1818 -AASFSQEALQYVVERVGKR-------------------TGWLVEIVNYNVENQQYVAAG 1857
Query: 126 --QRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGE 161
+ ++ T L+ + LQ+I + +L QK++ E++ G
Sbjct: 1858 DLRALDTVTNVLNFIKLQKIDIIEL-QKSLSLEEVEGH 1894
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.001
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 14/42 (33%)
Query: 141 QQISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLIVSTDKKTV 182
+Q +LKKL Q ++ K++ A SA P L + K T+
Sbjct: 19 KQ-ALKKL-QASL---KLY---ADDSA---PALAI---KATM 46
Score = 31.1 bits (69), Expect = 0.26
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 7/21 (33%)
Query: 97 EKKEIKWLGLPTNSLQESLNL 117
EK+ +K LQ SL L
Sbjct: 18 EKQALK-------KLQASLKL 31
Score = 26.8 bits (58), Expect = 6.0
Identities = 4/16 (25%), Positives = 8/16 (50%), Gaps = 5/16 (31%)
Query: 17 YSPEPLP-----ATVK 27
Y+ + P AT++
Sbjct: 32 YADDSAPALAIKATME 47
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, ,
structural genomics, protein structure initiative; 2.60A
{Helicobacter pylori}
Length = 475
Score = 30.6 bits (70), Expect = 0.66
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 215 GLGMGLDKGEWTEEDLQEAKRLV 237
LGMGL+ E V
Sbjct: 297 ALGMGLENIPKDFNRWLELAPCV 319
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 1.9
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 39 DEGGAYKRS--REKASKGLRHFSMKVCEKVRRKGVTTYNEVADE-LVQEFSED 88
D REKA K L ++ + E+V + + N +AD+ Q+ D
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN--NRIADKAFYQQPDAD 152
>1uuz_A IVY, inhibitor of vertebrate lysozyme; hydrolase/inhibitor,
lysozyme/inhibitor complex, IVY, type-C lysozyme
inhibitor, hydrolase; 1.8A {Pseudomonas aeruginosa}
SCOP: d.233.1.1
Length = 137
Score = 27.0 bits (59), Expect = 4.3
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 81 LVQEFSEDHNTASSEQEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLH 136
V E + + +W G P+ ++E L KQL N K H H
Sbjct: 84 QVSLPDEPAEVMQTPSKYATYRWYGEPSRQVRELL-----MKQLESDPNWKLEHHH 134
>3voq_A Target of rapamycin complex 2 subunit mapkap1; PH domain, membrane
protein; 2.00A {Homo sapiens}
Length = 125
Score = 27.0 bits (59), Expect = 4.7
Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 139 LLQQISLKKLIQKNIDSEKIHGEPAPSSAIQLPFLI----VSTDKKTVIDCSMSNDKTEY 194
++ ++ +Q I +K+ +P + F I +S D + C ++ +K+
Sbjct: 22 MIHRLRFTTDVQLGISGDKVEIDPVTNQKASTKFWIKQKPISIDSDLLCACDLAEEKSPS 81
Query: 195 LFVF 198
+F
Sbjct: 82 HAIF 85
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 27.2 bits (61), Expect = 4.8
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 205 HDDIEILKRMGLGMGLDKGEWTEEDLQEA 233
D+I +K G + +D + DL A
Sbjct: 119 PDNIAHMKARGAAVRVDFNTMSSTDLLNA 147
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding
enzyme, MGD-cofactors, DMSO-reductase family,
4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A*
1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Length = 875
Score = 27.6 bits (61), Expect = 5.7
Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 22/74 (29%)
Query: 201 KFEIHDDIEIL----KRMGLGM----GLDKGEWTE--------------EDLQEAKRLVA 238
E D EI K++ + G D+ W E ++ + V
Sbjct: 583 VGESMSDYEIYRLFAKKLNIEEMFSEGKDELAWCEQYFNATDMPKYMTWDEFFKKGYFVV 642
Query: 239 PCMEKYVNQIAYND 252
P +A
Sbjct: 643 PDNPNRKKTVALRW 656
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding,
nucleotide-binding, phosphoprotei
serine/threonine-protein kinase, transferase; 2.80A
{Schizosaccharomyces pombe}
Length = 336
Score = 27.2 bits (61), Expect = 7.1
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 187 MSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEAK 234
+ + +YL + + D I+ ++G MG + E L+ +
Sbjct: 262 FNVNLPDYLRPMEEVQGSYADSRIVSKLGEAMGFSEDY-IVEALRSDE 308
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 27.6 bits (60), Expect = 7.1
Identities = 19/134 (14%), Positives = 44/134 (32%), Gaps = 9/134 (6%)
Query: 45 KRSREKASKGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDHNTASSEQEKKEIKWL 104
++ A + K + V DE++ + +Q + +
Sbjct: 580 DGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAV 639
Query: 105 GLPTNSLQESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGE--- 161
G + + ++ LI++ + D ++QQ + I K+ ++ K G
Sbjct: 640 GYMIGAQTDQ----TVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILK 695
Query: 162 --PAPSSAIQLPFL 173
A+ PF+
Sbjct: 696 TNVRACKAVGHPFV 709
>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia
coli} PDB: 2eb5_A 2eb6_A
Length = 267
Score = 26.7 bits (59), Expect = 8.6
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 204 IHDDIEILKRMGLGMGLDKGEWTEEDLQEAKRLVAPCME 242
I IE+ L L T D+ A V P +E
Sbjct: 101 IVPRIEVELAFVLAKPLRGPNCTLFDVYNATDYVIPALE 139
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.129 0.355
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,492,847
Number of extensions: 265447
Number of successful extensions: 545
Number of sequences better than 10.0: 1
Number of HSP's gapped: 537
Number of HSP's successfully gapped: 31
Length of query: 308
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 215
Effective length of database: 4,105,140
Effective search space: 882605100
Effective search space used: 882605100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (25.7 bits)