RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9354
(308 letters)
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 148
Score = 180 bits (458), Expect = 1e-57
Identities = 76/139 (54%), Positives = 100/139 (71%), Gaps = 1/139 (0%)
Query: 112 QESLNLNKERKQLIQRINQKTRHLHDLLLQQISLKKLIQKNIDSEKIHGE-PAPSSAIQL 170
QE NL ER++ ++RI QK L +L+LQQI+ K L+Q+N +E+ P P+S I L
Sbjct: 2 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHL 61
Query: 171 PFLIVSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDL 230
PF+IV+T KKTVIDCS+SNDK EYLF FDN FEIHDDIE+LKRMG+ GL+ G + EDL
Sbjct: 62 PFIIVNTSKKTVIDCSISNDKFEYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSAEDL 121
Query: 231 QEAKRLVAPCMEKYVNQIA 249
+ A+ LV +E YV ++A
Sbjct: 122 KMARSLVPKALEPYVTEMA 140
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 76.6 bits (189), Expect = 1e-18
Identities = 40/81 (49%), Positives = 48/81 (59%), Gaps = 26/81 (32%)
Query: 53 KGLRHFSMKVCEKVRRKGVTTYNEVADELVQEFSEDHNTASSEQ---------------- 96
KGLRHFSMKVCEKV+RKG T+YNEVADELV EF+ +N +++
Sbjct: 2 KGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALN 61
Query: 97 ----------EKKEIKWLGLP 107
EKKEIKW+GLP
Sbjct: 62 VLMAMNIISKEKKEIKWIGLP 82
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA
{Amycolatopsis orientalis [TaxId: 31958]}
Length = 391
Score = 33.1 bits (74), Expect = 0.040
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 196 FVFDNKFEIHDDIEILKRMGLGMGLDKGEWTEEDLQEA-KRLVAPCMEKYVNQIA 249
V DN E + + +G+G+ +D T + L A +AP + +A
Sbjct: 314 RVVDNVVEQAYHADRVAELGVGVAVDGPVPTIDSLSAALDTALAPEIRARATTVA 368
>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol
(CDP-me) synthase (IspD, YgbP) {Thermotoga maritima
[TaxId: 2336]}
Length = 221
Score = 28.1 bits (61), Expect = 1.3
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 175 VSTDKKTVIDCSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEW------TEE 228
+ I + +N E DD E ++++G+ + L +G+ +E
Sbjct: 149 IPRKGVYRILTPQAFSYEILKKAHENGGEWADDTEPVQKLGVKIALVEGDPLCFKVTFKE 208
Query: 229 DLQEAKRLV 237
DL+ A+ +
Sbjct: 209 DLELARIIA 217
>d1w77a1 c.68.1.13 (A:75-300)
4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)
synthase (IspD, YgbP) {Thale cress (Arabidopsis
thaliana), chloroplast [TaxId: 3702]}
Length = 226
Score = 28.1 bits (61), Expect = 1.3
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 185 CSMSNDKTEYLFVFDNKFEIHDDIEILKRMGLGMGLDKGEW------TEEDLQEAKRLVA 238
K + V E+ DD+ I++ + + + +G + T +DL A+R+++
Sbjct: 166 IKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILS 225
>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 27.6 bits (60), Expect = 1.6
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 85 FSEDHNTASSEQEKKEIKWLGLPTNSLQESLNLNKERKQLIQRINQKTRHLHD 137
+ + +K ++L L + NK + R + K R LH+
Sbjct: 167 DGDRLIRDPFPEIQKVERFLKLSPQINASNFYFNKTKGFYCLRDSGKDRCLHE 219
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and
beige-like anchor protein LRBA {Human (Homo sapiens)
[TaxId: 9606]}
Length = 110
Score = 26.0 bits (57), Expect = 3.0
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 189 NDKTEYLFVFDNKFEIHDDIEILKRMGL 216
++ +F F + + + L R+G+
Sbjct: 83 ANRVAVMFNFPDPATVKKVVNFLPRVGV 110
>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol
(CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId:
562]}
Length = 225
Score = 26.2 bits (56), Expect = 4.9
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 6/45 (13%)
Query: 198 FDNKFEIHDDIEILKRMGLGMGLDKGEW------TEEDLQEAKRL 236
+ I D+ L+ G L +G EDL A+
Sbjct: 178 LNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFY 222
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 55
Score = 23.7 bits (51), Expect = 6.2
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 222 KGEWTEEDLQEAKRLVAPCMEKYVNQIAYNDGL 254
K +WT E+ + K V E I+ N
Sbjct: 2 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPF 34
>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol
(CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae
[TaxId: 485]}
Length = 226
Score = 25.7 bits (55), Expect = 7.6
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 199 DNKFEIHDDIEILKRMGLGMGLDKGEW------TEEDLQEAKRL 236
+N I D+ ++++G+ L +G+ +D + L
Sbjct: 181 ENLGGITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLL 224
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma
acidophilum [TaxId: 2303]}
Length = 256
Score = 25.5 bits (55), Expect = 9.6
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 216 LGMGLDKGEWTEEDLQEAKRLVAPCMEKY 244
L + + TE++ A+ L +KY
Sbjct: 222 LHIDFREDTITEKEESLARELFD---KKY 247
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.129 0.355
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,073,174
Number of extensions: 49433
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 16
Length of query: 308
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,240,546
Effective search space: 276641758
Effective search space used: 276641758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.5 bits)