BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9355
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
pdb|2D4W|B Chain B, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
Length = 504
Score = 186 bits (472), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 87/153 (56%), Positives = 111/153 (72%)
Query: 4 KVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
KV S+ GLLTTV +K+GD P VYALEGS+AV G+ + WLRDN+GM ++E LA +
Sbjct: 279 KVMSKNGLLTTVCYKIGDAPAVYALEGSIAVTGSLVQWLRDNLGMFEDAPDVEWLAGKVQ 338
Query: 64 HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
G YFVPAFSGL+APYW+PDARG + G+T R HI RAALEA FQ+R++++AM
Sbjct: 339 DNGGAYFVPAFSGLFAPYWRPDARGALVGLTRYVNRNHIARAALEATAFQSREVVDAMNA 398
Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
D G+ L +L+VDGGM AN+ LMQ QAD G+ V
Sbjct: 399 DSGVDLTELRVDGGMVANELLMQFQADQLGVDV 431
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 28/31 (90%)
Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEW 189
N+TGG +GG ++TDV+NASRTMLM+++TL W
Sbjct: 170 NMTGGTEGGVHVTDVTNASRTMLMDLDTLSW 200
>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
pdb|2DPN|B Chain B, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
Length = 495
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 109/152 (71%), Gaps = 2/152 (1%)
Query: 5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
V S +GLL TVA+ LG YALEGS+ VAGAA+ WL++ VG++ E+E+LA S
Sbjct: 277 VLSEKGLLATVAWSLGGR-ATYALEGSLFVAGAAVGWLKE-VGLIRESAEVEALAASVED 334
Query: 65 TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
TGDVYFVPAF+GL APYW P ARG + G+T T+R H+ RAALE + FQ RD++ AM+++
Sbjct: 335 TGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLARAALEGVAFQVRDVVLAMEEE 394
Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
G++L L+ DGGM N+ ++ QADL G+PV
Sbjct: 395 AGVRLKVLKADGGMAQNRLFLKIQADLLGVPV 426
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLC 194
NLTGGK + TD +NASRT+L N+ TL WDP L
Sbjct: 170 NLTGGK---VHATDPTNASRTLLFNLHTLAWDPELL 202
>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
Length = 501
Score = 149 bits (377), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
V S GLLTT+A E V YALEG+V +AGA++ WLRD + ++ + E A ++
Sbjct: 280 VKSENGLLTTIACGPTGE-VNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQN 338
Query: 65 TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
T VY VPAF+GL APYW P ARG I G+T HI+RA LE+I +QTRD+LEAM+ D
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQAD 398
Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
GI+L L+VDGG AN LMQ Q+D+ G V +
Sbjct: 399 SGIRLHALRVDGGAVANNFLMQFQSDILGTRVER 432
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 166 GGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
G ++TD +NASRTML NI TL+WD + V +I
Sbjct: 176 GRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDI 209
>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLB|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLC|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLD|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLE|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLF|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BOT|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate
Length = 501
Score = 149 bits (377), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
V S GLLTT+A E V YALEG+V +AGA++ WLRD + ++ + E A ++
Sbjct: 280 VKSENGLLTTIACGPTGE-VNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQN 338
Query: 65 TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
T VY VPAF+GL APYW P ARG I G+T HI+RA LE+I +QTRD+LEAM+ D
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQAD 398
Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
GI+L L+VDGG AN LMQ Q+D+ G V +
Sbjct: 399 SGIRLHALRVDGGAVANNFLMQFQSDILGTRVER 432
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 166 GGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
G ++TD +NASRTML NI TL+WD + V +I
Sbjct: 176 GRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDI 209
>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
Length = 501
Score = 149 bits (377), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
V S GLLTT+A E V YALEG+V +AGA++ WLRD + ++ + E A ++
Sbjct: 280 VKSENGLLTTIACGPTGE-VNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQN 338
Query: 65 TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
T VY VPAF+GL APYW P ARG I G+T HI+RA LE+I +QTRD+LEAM+ D
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQAD 398
Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
GI+L L+VDGG AN LMQ Q+D+ G V +
Sbjct: 399 SGIRLHALRVDGGAVANNFLMQFQSDILGTRVER 432
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 166 GGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
G ++TD +NASRTML NI TL+WD + V +I
Sbjct: 176 GRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDI 209
>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|B Chain B, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|E Chain E, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|G Chain G, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|C Chain C, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|D Chain D, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|F Chain F, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|H Chain H, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
Length = 526
Score = 149 bits (377), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
V S GLLTT+A E V YALEG+V +AGA++ WLRD + ++ + E A ++
Sbjct: 280 VKSENGLLTTIACGPTGE-VNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQN 338
Query: 65 TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
T VY VPAF+GL APYW P ARG I G+T HI+RA LE+I +QTRD+LEAM+ D
Sbjct: 339 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQAD 398
Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
GI+L L+VDGG AN LMQ Q+D+ G V +
Sbjct: 399 SGIRLHALRVDGGAVANNFLMQFQSDILGTRVER 432
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 166 GGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
G ++TD +NASRTML NI TL+WD + V +I
Sbjct: 176 GRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDI 209
>pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|B Chain B, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|C Chain C, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|D Chain D, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3GE1|A Chain A, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|B Chain B, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|C Chain C, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|D Chain D, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
Length = 501
Score = 143 bits (361), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
V S GLLTT+A+ + D V YALEGS+ V+G+A+ WLRD + + + ES A
Sbjct: 282 VKSESGLLTTIAYGI-DGKVNYALEGSIFVSGSAIQWLRDGLRXINSAPQSESYATRVDS 340
Query: 65 TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
T VY VPAF GL PYW +ARG I G+T T + H +RA LE++C+QTRD+ EA KD
Sbjct: 341 TEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHFIRATLESLCYQTRDVXEAXSKD 400
Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
GI + L+VDGG N + Q QAD+ V +
Sbjct: 401 SGIDVQSLRVDGGAVKNNFIXQFQADIVNTSVER 434
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 169 YITDVSNASRTMLMNIETLEWDPML 193
+ITD SNASRT+ NI LEWD L
Sbjct: 181 HITDYSNASRTLXFNIHDLEWDDEL 205
>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
pdb|3D7E|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
Length = 505
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 3/166 (1%)
Query: 7 SRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTG 66
S LLTT+ + + + V YALEGS+ VAG+A+ WLRD + M+ + E LA +
Sbjct: 282 SDNDLLTTIGYGINGK-VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDN 340
Query: 67 DVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCG 126
+VY VPAF+GL APYW +ARG + G+T TT+ VRA L+A+ +Q++D+++ MKKD G
Sbjct: 341 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSG 400
Query: 127 IQLIKLQVDGGMTANKHLMQTQADLCGIPVGK--NLTGGKDGGKYI 170
I + L+VDGG N LMQ QAD+ I V + NL G Y+
Sbjct: 401 IDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYL 446
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 165 DGGKYITDVSNASRTMLMNIETLEWD 190
DG ++TD SNASRTML NI LEWD
Sbjct: 175 DGQVHVTDYSNASRTMLYNIHKLEWD 200
>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol
pdb|3H3N|O Chain O, Glycerol Kinase H232r With Glycerol
pdb|3H3O|O Chain O, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|X Chain X, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|B Chain B, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|C Chain C, Glycerol Kinase H232r With Ethylene Glycol
Length = 506
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 3/166 (1%)
Query: 7 SRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTG 66
S LLTT+ + + + V YALEGS+ VAG+A+ WLRD + M+ + E LA +
Sbjct: 283 SDNDLLTTIGYGINGK-VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDN 341
Query: 67 DVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCG 126
+VY VPAF+GL APYW +ARG + G+T TT+ VRA L+A+ +Q++D+++ MKKD G
Sbjct: 342 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSG 401
Query: 127 IQLIKLQVDGGMTANKHLMQTQADLCGIPVGK--NLTGGKDGGKYI 170
I + L+VDGG N LMQ QAD+ I V + NL G Y+
Sbjct: 402 IDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYL 447
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 165 DGGKYITDVSNASRTMLMNIETLEWD 190
DG ++TD SNASRTML NI LEWD
Sbjct: 176 DGQVHVTDYSNASRTMLYNIHKLEWD 201
>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|O Chain O, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|C Chain C, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|D Chain D, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H46|X Chain X, Glycerol Kinase H232e With Glycerol
pdb|3H46|O Chain O, Glycerol Kinase H232e With Glycerol
Length = 506
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 3/166 (1%)
Query: 7 SRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTG 66
S LLTT+ + + + V YALEGS+ VAG+A+ WLRD + M+ + E LA +
Sbjct: 283 SDNDLLTTIGYGINGK-VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDN 341
Query: 67 DVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCG 126
+VY VPAF+GL APYW +ARG + G+T TT+ VRA L+A+ +Q++D+++ MKKD G
Sbjct: 342 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSG 401
Query: 127 IQLIKLQVDGGMTANKHLMQTQADLCGIPVGK--NLTGGKDGGKYI 170
I + L+VDGG N LMQ QAD+ I V + NL G Y+
Sbjct: 402 IDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYL 447
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 165 DGGKYITDVSNASRTMLMNIETLEWD 190
DG ++TD SNASRTML NI LEWD
Sbjct: 176 DGQVHVTDYSNASRTMLYNIHKLEWD 201
>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
pdb|3FLC|X Chain X, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
Length = 518
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 3/166 (1%)
Query: 7 SRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTG 66
S LLTT+ + + + V YALEGS+ VAG+A+ WLRD + M+ + E LA +
Sbjct: 295 SDNDLLTTIGYGINGK-VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDN 353
Query: 67 DVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCG 126
+VY VPAF+GL APYW +ARG + G+T TT+ VRA L+A+ +Q++D+++ MKKD G
Sbjct: 354 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSG 413
Query: 127 IQLIKLQVDGGMTANKHLMQTQADLCGIPVGK--NLTGGKDGGKYI 170
I + L+VDGG N LMQ QAD+ I V + NL G Y+
Sbjct: 414 IDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYL 459
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 165 DGGKYITDVSNASRTMLMNIETLEWD 190
DG ++TD SNASRTML NI LEWD
Sbjct: 188 DGQVHVTDYSNASRTMLYNIHKLEWD 213
>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase
pdb|1R59|X Chain X, Enterococcus Casseliflavus Glycerol Kinase
Length = 505
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 3/166 (1%)
Query: 7 SRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTG 66
S LLTT+ + + + V YALEGS+ VAG+A+ WLRD + M+ + E LA +
Sbjct: 282 SDNDLLTTIGYGINGK-VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDN 340
Query: 67 DVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCG 126
+VY VPAF+GL APYW +ARG + G+T TT+ VRA L+A+ +Q++D+++ MKKD G
Sbjct: 341 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSG 400
Query: 127 IQLIKLQVDGGMTANKHLMQTQADLCGIPVGK--NLTGGKDGGKYI 170
I + L+VDGG N LMQ QAD+ I V + NL G Y+
Sbjct: 401 IDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYL 446
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 165 DGGKYITDVSNASRTMLMNIETLEWD 190
DG ++TD SNASRTML NI LEWD
Sbjct: 175 DGQVHVTDYSNASRTMLYNIHKLEWD 200
>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
pdb|1XUP|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
Length = 487
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 3/166 (1%)
Query: 7 SRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTG 66
S LLTT+ + + + V YALEGS+ VAG+A+ WLRD + M+ + E LA +
Sbjct: 278 SDNDLLTTIGYGINGK-VYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDN 336
Query: 67 DVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCG 126
+VY VPAF+GL APYW +ARG + G+T TT+ VRA L+A+ +Q++D+++ MKKD G
Sbjct: 337 EVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSG 396
Query: 127 IQLIKLQVDGGMTANKHLMQTQADLCGIPVGK--NLTGGKDGGKYI 170
I + L+VDGG N LMQ QAD+ I V + NL G Y+
Sbjct: 397 IDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLETTALGAAYL 442
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 165 DGGKYITDVSNASRTMLMNIETLEWD 190
DG ++TD SNASRTML NI LEWD
Sbjct: 171 DGQVHVTDYSNASRTMLYNIHKLEWD 196
>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|B Chain B, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|C Chain C, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|D Chain D, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
Length = 520
Score = 140 bits (352), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 100/157 (63%), Gaps = 5/157 (3%)
Query: 5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
V S+ LLTT+A++L D YALEGS+ VAGAA+ WLRD + ++ + SLAES
Sbjct: 301 VRSKNRLLTTIAYRL-DGETTYALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADP 359
Query: 65 TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
+ +VY VPAF+GL AP+W PDARG I G T +T RAALEA+C+QTRD+LEA KD
Sbjct: 360 SQEVYLVPAFTGLGAPHWDPDARGAIFGXTRNTGPAEFARAALEAVCYQTRDLLEAXHKD 419
Query: 125 C---GIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158
G + L+VDGG A+ Q +DL PV +
Sbjct: 420 WRRNGNDTV-LRVDGGXVASDWTXQRLSDLLDAPVDR 455
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGV 196
LTGG+ + TD +NASRT+L NI WD L V
Sbjct: 194 RLTGGE---CFCTDATNASRTLLYNIAENAWDDELTEV 228
>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
pdb|2ZF5|Y Chain Y, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
Length = 497
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 94/146 (64%), Gaps = 3/146 (2%)
Query: 11 LLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYF 70
LLTT+A+ L V YALEGS+ V GAA+ WLRD + ++ E E LA VYF
Sbjct: 279 LLTTIAWGLNGR-VSYALEGSIFVTGAAVQWLRDGIKIIKHASETEELATKLESNEGVYF 337
Query: 71 VPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLI 130
VPAF GL APYW ARGII GIT T R H+ RA LEAI + TRD+++ M+K +Q+
Sbjct: 338 VPAFVGLGAPYWDQFARGIIIGITRGTGREHLARATLEAIAYLTRDVVDEMEK--LVQIK 395
Query: 131 KLQVDGGMTANKHLMQTQADLCGIPV 156
+L+VDGG TAN LMQ QAD+ V
Sbjct: 396 ELRVDGGATANDFLMQFQADILNRKV 421
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
G+++TD SNASRTML NI+ L+WD L +++I
Sbjct: 172 GEHVTDYSNASRTMLFNIKKLDWDDELLELFDI 204
>pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
pdb|2W41|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
Length = 507
Score = 129 bits (325), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 109/190 (57%), Gaps = 12/190 (6%)
Query: 5 VDSRQGLLTTVAFKLGD-EPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
V S GL+TT+ +K D + YALEGS+ AG+ ++WL N ++ E + E
Sbjct: 287 VYSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLLKN-KLIDDPSEASDIMEKCE 345
Query: 64 HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
+T V FVPAFSGLYAP W+ DAR I G+T +T R HIVRA LE I FQ +I++++
Sbjct: 346 NTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTS 405
Query: 124 DCGIQLIK-LQVDGGMTANKHLMQTQADLCGIPVGKNLTGGKDGGKYITDVSNASRTMLM 182
D GI+++ L+ DGGMT NK MQ +D+ + + KY +V++ +L
Sbjct: 406 DMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKI--------EVSKY-KEVTSLGAAVLA 456
Query: 183 NIETLEWDPM 192
+E WD +
Sbjct: 457 GLEVKIWDSL 466
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
G TDV+NASRT+LM+I TL+WD +C ++ I
Sbjct: 182 GNCYTDVTNASRTLLMDINTLQWDEKMCKIFNI 214
>pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|C Chain C, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|D Chain D, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
Length = 503
Score = 129 bits (325), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 109/190 (57%), Gaps = 12/190 (6%)
Query: 5 VDSRQGLLTTVAFKLGD-EPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
V S GL+TT+ +K D + YALEGS+ AG+ ++WL N ++ E + E
Sbjct: 283 VYSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLLKN-KLIDDPSEASDIMEKCE 341
Query: 64 HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
+T V FVPAFSGLYAP W+ DAR I G+T +T R HIVRA LE I FQ +I++++
Sbjct: 342 NTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTS 401
Query: 124 DCGIQLIK-LQVDGGMTANKHLMQTQADLCGIPVGKNLTGGKDGGKYITDVSNASRTMLM 182
D GI+++ L+ DGGMT NK MQ +D+ + + KY +V++ +L
Sbjct: 402 DMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKI--------EVSKY-KEVTSLGAAVLA 452
Query: 183 NIETLEWDPM 192
+E WD +
Sbjct: 453 GLEVKIWDSL 462
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
G TDV+NASRT+LM+I TL+WD +C ++ I
Sbjct: 178 GNCYTDVTNASRTLLMDINTLQWDEKMCKIFNI 210
>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2ITM|B Chain B, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2NLX|A Chain A, Crystal Structure Of The Apo E. Coli Xylulose Kinase
pdb|2NLX|B Chain B, Crystal Structure Of The Apo E. Coli Xylulose Kinase
Length = 484
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 23 PVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYW 82
P + L + A + ++W G+ I + ++ V+F+P SG P+
Sbjct: 282 PQRWHLMSVMLSAASCLDWAAKLTGLSNVPALIAAAQQADESAEPVWFLPYLSGERTPHN 341
Query: 83 QPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANK 142
P A+G+ G+T + RA LE + + D ++ + CGI+ + + GG ++
Sbjct: 342 NPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHA-CGIKPQSVTLIGGGARSE 400
Query: 143 HLMQTQADLCG 153
+ Q AD+ G
Sbjct: 401 YWRQMLADISG 411
>pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus
Acidophilus
pdb|3LL3|A Chain A, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
pdb|3LL3|B Chain B, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
Length = 504
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 3/133 (2%)
Query: 26 YALEGSVAVAGAAMNWLRDNV--GMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQ 83
Y L G V G NW R + T + ++ + + ++ F+P G AP W
Sbjct: 290 YLLGGPVNNGGIVFNWARQTLFDADETPQDFLDVAQTAPAGSRNLIFLPYLGGERAPIWD 349
Query: 84 PDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKH 143
+ARG G+T + RA +E I F D + K+ + + + GG +
Sbjct: 350 ANARGSFVGLTRXHQKPEXARAVIEGIIFNLYDAASNLIKNTK-KPVAINATGGFLKSDF 408
Query: 144 LMQTQADLCGIPV 156
+ Q A++ +P+
Sbjct: 409 VRQLCANIFNVPI 421
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEINMQ 202
GK +TD + A+ T ++N++TL WD L + +I +
Sbjct: 167 GKLVTDTTXAAGTGILNLKTLTWDQELLDILKIKKE 202
>pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
pdb|3IFR|B Chain B, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
Length = 508
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 5/138 (3%)
Query: 23 PVVYALEGSVAVAGAAMNWLRDNVGMVTGVE---EIESLAESHRHTGD-VYFVPAFSGLY 78
P +YA G A G+A+NWL + G ++++LA D + +P F G
Sbjct: 292 PGLYAPNGCXAATGSALNWLAKLLAPEAGEAAHAQLDALAAEVPAGADGLVCLPYFLGEK 351
Query: 79 APYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGM 138
P P A G G++ TRGH+ RA LEA+ R + A+ D G + G
Sbjct: 352 TPIHDPFASGTFTGLSLSHTRGHLWRALLEAVALAFRHHV-AVLDDIGHAPQRFFASDGG 410
Query: 139 TANKHLMQTQADLCGIPV 156
T ++ AD+ PV
Sbjct: 411 TRSRVWXGIXADVLQRPV 428
>pdb|3GG4|A Chain A, The Crystal Structure Of Glycerol Kinase From Yersinia
Pseudotuberculosis
pdb|3GG4|B Chain B, The Crystal Structure Of Glycerol Kinase From Yersinia
Pseudotuberculosis
pdb|3L0Q|A Chain A, The Crystal Structure Of Xlylulose Kinase From Yersinia
Pseudotuberculosis
pdb|3L0Q|B Chain B, The Crystal Structure Of Xlylulose Kinase From Yersinia
Pseudotuberculosis
Length = 554
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 65 TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTT-RGHIVR--AALEAICFQTRDILEAM 121
T D++ +P F G +P P+ GII G+ TT +R A ++A+ TR I+E
Sbjct: 377 TNDIHXLPYFHGNRSPRANPNLTGIITGLKLSTTPEDXALRYLATIQALALGTRHIIETX 436
Query: 122 KKDCGIQLIKLQVDGGMTANKHLMQTQADLCG 153
++ G + GG T N +Q A+ G
Sbjct: 437 NQN-GYNIDTXXASGGGTKNPIFVQEHANATG 467
>pdb|3HZ6|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
Violaceum
pdb|3KZB|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
Violaceum
Length = 511
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 68 VYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGI 127
+ FVP P P RG + G+T TTR I+ A LE R E + +
Sbjct: 345 LLFVPYLHAERCPVELPAPRGALLGVTGATTRAQILLAVLEGAALSLRWCAELLGXE--- 401
Query: 128 QLIKLQVDGGMTANKHLMQTQAD 150
++ L+V GG ++ ++ AD
Sbjct: 402 KVGLLKVVGGGARSEAWLRXIAD 424
>pdb|1WR2|A Chain A, Crystal Structure Of Ph1788 From Pyrococcus Horikoshii Ot3
Length = 238
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 77 LYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKL 132
L AP +P R +I G+TED GH AI F I + KD +L+ +
Sbjct: 111 LVAPMLKP-GREVIIGVTEDPQFGH-------AIMFGLGGIFVEILKDVTFRLVPI 158
>pdb|2CGL|A Chain A, Crystal Structure Of L-Rhamnulose Kinase From Escherichia
Coli In Complex With L-Fructose, Adp And A Modeled Atp
Gamma Phosphate
Length = 489
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 100 GHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
+ R +++ D+L + + G +L + GG N L Q AD CGI V
Sbjct: 365 AELARCIFDSLALLYADVLHELAQLRGEDFSQLHIVGGGCQNTLLNQLCADACGIRV 421
>pdb|2CGJ|A Chain A, Crystal Structure Of L-Rhamnulose Kinase From Escherichia
Coli In Complex With L-Fructose And Adp.
pdb|2CGK|A Chain A, Crystal Structure Of L-Rhamnulose Kinase From Escherichia
Coli In An Open Uncomplexed Conformation.
pdb|2CGK|B Chain B, Crystal Structure Of L-Rhamnulose Kinase From Escherichia
Coli In An Open Uncomplexed Conformation.
pdb|2UYT|A Chain A, Structure Of L-Rhamnulose Kinase In Complex With Adp And
Beta-L-Rhamnulose
Length = 489
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 100 GHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
+ R +++ D+L + + G +L + GG N L Q AD CGI V
Sbjct: 365 AELARCIFDSLALLYADVLHELAQLRGEDFSQLHIVGGGCQNTLLNQLCADACGIRV 421
>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 502
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 13/67 (19%)
Query: 27 ALEGSVAVAGAAMNWLRDNVGMV-----TGVEEIESLAESHRHTGDVYFVPAFSGLYA-- 79
A+E + AV G A+N +NVG+V TG++E + R TG + VP L
Sbjct: 52 AVEFANAVMGMALNLEENNVGIVILGPYTGIKE----GDEVRRTGRIMEVPVGETLIGRV 107
Query: 80 --PYWQP 84
P QP
Sbjct: 108 VNPLGQP 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,095,115
Number of Sequences: 62578
Number of extensions: 244163
Number of successful extensions: 595
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 538
Number of HSP's gapped (non-prelim): 49
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)