Query psy9355
Match_columns 204
No_of_seqs 212 out of 1153
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 17:01:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02295 glycerol kinase 100.0 1.3E-39 2.9E-44 291.9 20.7 193 8-201 286-494 (512)
2 PRK00047 glpK glycerol kinase; 100.0 4.4E-39 9.5E-44 287.7 20.8 191 8-201 284-484 (498)
3 PTZ00294 glycerol kinase-like 100.0 4.5E-39 9.7E-44 288.1 20.8 193 8-202 285-489 (504)
4 TIGR01311 glycerol_kin glycero 100.0 1.1E-38 2.3E-43 284.9 20.8 192 8-201 279-480 (493)
5 COG0554 GlpK Glycerol kinase [ 100.0 4.2E-38 9E-43 270.8 19.8 187 4-192 279-475 (499)
6 TIGR01315 5C_CHO_kinase FGGY-f 100.0 1.5E-38 3.2E-43 286.8 17.0 179 22-201 313-527 (541)
7 PRK15027 xylulokinase; Provisi 100.0 2.9E-38 6.3E-43 281.6 18.4 186 10-201 272-469 (484)
8 TIGR01314 gntK_FGGY gluconate 100.0 1.4E-37 2.9E-42 278.6 18.7 184 15-201 279-483 (505)
9 TIGR01312 XylB D-xylulose kina 100.0 1.8E-37 3.8E-42 276.0 19.0 191 8-202 273-474 (481)
10 PRK04123 ribulokinase; Provisi 100.0 1E-37 2.2E-42 281.8 17.6 190 12-202 309-524 (548)
11 TIGR01234 L-ribulokinase L-rib 100.0 3.4E-37 7.4E-42 277.7 17.4 188 14-202 308-521 (536)
12 PRK10939 autoinducer-2 (AI-2) 100.0 6.4E-35 1.4E-39 262.1 14.8 177 23-201 292-492 (520)
13 PRK10331 L-fuculokinase; Provi 100.0 1.1E-32 2.3E-37 245.0 17.4 167 23-199 291-469 (470)
14 PF02782 FGGY_C: FGGY family o 100.0 3.4E-32 7.3E-37 215.5 15.4 161 6-168 20-191 (198)
15 KOG2517|consensus 100.0 5.7E-32 1.2E-36 237.1 12.8 195 3-200 288-495 (516)
16 COG1069 AraB Ribulose kinase [ 100.0 1.4E-31 2.9E-36 233.5 12.5 191 10-201 289-515 (544)
17 COG1070 XylB Sugar (pentulose 100.0 3.2E-30 7E-35 230.8 17.7 188 10-201 283-484 (502)
18 TIGR02628 fuculo_kin_coli L-fu 100.0 7.2E-30 1.6E-34 226.7 17.4 160 22-190 289-465 (465)
19 PRK10640 rhaB rhamnulokinase; 100.0 4.2E-29 9E-34 222.1 10.6 169 22-201 269-461 (471)
20 PLN02669 xylulokinase 99.9 1.7E-26 3.6E-31 208.8 14.9 137 23-162 329-479 (556)
21 TIGR02627 rhamnulo_kin rhamnul 99.9 3.7E-24 8E-29 189.7 12.3 147 23-179 282-447 (454)
22 KOG2531|consensus 99.1 5.6E-10 1.2E-14 96.6 11.5 142 13-161 320-475 (545)
23 TIGR00241 CoA_E_activ CoA-subs 98.5 2.1E-07 4.5E-12 76.5 7.0 114 32-162 123-237 (248)
24 PRK13317 pantothenate kinase; 98.2 6.9E-05 1.5E-09 62.6 14.4 142 25-169 116-270 (277)
25 TIGR00555 panK_eukar pantothen 97.5 0.0077 1.7E-07 50.4 15.3 135 25-162 121-268 (279)
26 COG1924 Activator of 2-hydroxy 97.2 0.0014 3.1E-08 56.3 7.6 126 23-170 251-387 (396)
27 TIGR02259 benz_CoA_red_A benzo 96.9 0.003 6.4E-08 55.1 7.1 121 28-169 296-430 (432)
28 TIGR03286 methan_mark_15 putat 96.9 0.0064 1.4E-07 53.2 9.0 125 31-170 272-400 (404)
29 TIGR03192 benz_CoA_bzdQ benzoy 96.9 0.0078 1.7E-07 50.6 9.0 128 28-170 154-285 (293)
30 COG0533 QRI7 Metal-dependent p 96.9 0.024 5.2E-07 48.4 11.8 129 24-161 147-297 (342)
31 PRK09585 anmK anhydro-N-acetyl 96.7 0.0063 1.4E-07 52.8 7.3 60 97-160 259-318 (365)
32 PF03702 UPF0075: Uncharacteri 96.6 0.011 2.5E-07 51.2 8.4 60 98-161 258-318 (364)
33 TIGR02529 EutJ ethanolamine ut 96.5 0.0073 1.6E-07 49.4 6.4 55 101-161 173-227 (239)
34 TIGR02261 benz_CoA_red_D benzo 96.4 0.015 3.3E-07 48.1 7.6 111 28-153 126-236 (262)
35 PF11104 PilM_2: Type IV pilus 96.3 0.014 3E-07 50.1 6.9 63 99-161 244-307 (340)
36 PRK15080 ethanolamine utilizat 96.2 0.011 2.4E-07 49.1 5.7 56 100-161 199-254 (267)
37 PLN02920 pantothenate kinase 1 95.9 0.46 1E-05 41.6 14.4 137 23-162 184-338 (398)
38 COG2377 Predicted molecular ch 95.4 0.075 1.6E-06 45.8 7.5 58 97-158 263-321 (371)
39 PRK09604 UGMP family protein; 95.4 0.37 8.1E-06 41.3 11.9 120 32-161 158-290 (332)
40 PRK14878 UGMP family protein; 95.2 0.084 1.8E-06 45.1 7.3 120 32-161 149-277 (323)
41 PRK11678 putative chaperone; P 94.9 0.11 2.4E-06 46.5 7.7 74 94-168 366-440 (450)
42 TIGR01175 pilM type IV pilus a 94.9 0.081 1.7E-06 45.3 6.6 61 100-160 253-314 (348)
43 PRK09472 ftsA cell division pr 94.8 0.096 2.1E-06 46.3 6.9 62 99-160 293-360 (420)
44 CHL00094 dnaK heat shock prote 94.6 0.049 1.1E-06 50.6 4.8 33 128-160 328-360 (621)
45 TIGR00143 hypF [NiFe] hydrogen 94.4 0.078 1.7E-06 50.0 5.6 121 32-161 560-694 (711)
46 TIGR00329 gcp_kae1 metallohydr 94.4 0.15 3.3E-06 43.1 6.9 125 32-161 156-294 (305)
47 PF03630 Fumble: Fumble ; Int 94.4 0.19 4.1E-06 43.4 7.4 137 23-162 175-328 (341)
48 PTZ00340 O-sialoglycoprotein e 94.3 0.16 3.5E-06 43.8 6.9 125 24-161 144-299 (345)
49 PLN02902 pantothenate kinase 94.2 1.5 3.2E-05 42.1 13.5 128 23-153 233-372 (876)
50 TIGR03722 arch_KAE1 universal 94.0 0.22 4.9E-06 42.4 7.2 120 33-161 151-278 (322)
51 TIGR03723 bact_gcp putative gl 94.0 0.2 4.3E-06 42.6 6.8 62 98-161 231-295 (314)
52 PRK13410 molecular chaperone D 93.7 0.077 1.7E-06 49.8 4.1 33 128-160 328-360 (668)
53 COG3426 Butyrate kinase [Energ 93.6 0.33 7.1E-06 40.7 7.1 60 102-161 270-331 (358)
54 PRK13928 rod shape-determining 93.6 0.16 3.6E-06 43.3 5.7 70 101-170 246-320 (336)
55 PRK00290 dnaK molecular chaper 92.7 0.16 3.6E-06 47.2 4.6 33 128-160 326-358 (627)
56 PRK13929 rod-share determining 92.6 0.46 1E-05 40.7 7.0 33 129-161 278-311 (335)
57 TIGR01174 ftsA cell division p 92.5 0.22 4.7E-06 43.2 4.9 33 129-161 314-347 (371)
58 TIGR00904 mreB cell shape dete 92.5 0.29 6.3E-06 41.7 5.6 61 101-161 250-312 (333)
59 PRK09605 bifunctional UGMP fam 92.3 0.52 1.1E-05 42.9 7.3 117 32-161 153-281 (535)
60 PRK13927 rod shape-determining 92.3 0.3 6.6E-06 41.5 5.4 61 101-161 247-309 (334)
61 PRK05183 hscA chaperone protei 92.0 0.23 5E-06 46.2 4.6 31 128-158 328-358 (616)
62 PTZ00400 DnaK-type molecular c 91.9 0.31 6.8E-06 45.7 5.4 32 128-159 367-398 (663)
63 TIGR02350 prok_dnaK chaperone 91.7 0.23 5E-06 45.9 4.3 33 128-160 324-356 (595)
64 PRK13930 rod shape-determining 91.5 0.4 8.6E-06 40.8 5.3 61 101-161 251-313 (335)
65 PRK01433 hscA chaperone protei 91.0 0.39 8.5E-06 44.5 5.0 35 127-161 307-341 (595)
66 PF06723 MreB_Mbl: MreB/Mbl pr 90.8 0.22 4.8E-06 42.7 3.0 33 130-162 275-307 (326)
67 PTZ00186 heat shock 70 kDa pre 89.7 0.42 9.1E-06 44.8 4.1 54 101-158 327-383 (657)
68 PF00012 HSP70: Hsp70 protein; 89.4 0.61 1.3E-05 42.8 4.9 59 102-161 303-361 (602)
69 TIGR01991 HscA Fe-S protein as 89.0 0.94 2E-05 42.0 5.9 32 128-159 312-343 (599)
70 COG4972 PilM Tfp pilus assembl 87.8 2.5 5.4E-05 36.2 7.1 62 100-161 258-320 (354)
71 PTZ00297 pantothenate kinase; 87.6 22 0.00047 36.8 14.7 141 24-167 1235-1440(1452)
72 COG1077 MreB Actin-like ATPase 86.7 0.87 1.9E-05 38.9 3.8 68 103-170 256-328 (342)
73 PLN03184 chloroplast Hsp70; Pr 86.4 0.96 2.1E-05 42.6 4.3 32 128-159 365-396 (673)
74 PF02543 CmcH_NodU: Carbamoylt 86.3 1.8 4E-05 37.6 5.7 60 97-161 133-197 (360)
75 KOG2201|consensus 86.0 4.5 9.7E-05 34.7 7.6 129 23-153 193-330 (371)
76 PRK13411 molecular chaperone D 85.8 1.6 3.5E-05 41.0 5.4 30 129-158 328-358 (653)
77 PTZ00009 heat shock 70 kDa pro 85.5 1.3 2.8E-05 41.5 4.7 30 128-157 332-362 (653)
78 PRK00180 acetate kinase A/prop 85.3 4.5 9.7E-05 35.8 7.6 50 104-153 299-349 (402)
79 TIGR00016 ackA acetate kinase. 84.5 5.3 0.00011 35.3 7.7 50 104-153 303-353 (404)
80 COG0068 HypF Hydrogenase matur 83.8 4 8.7E-05 38.4 6.9 57 96-154 663-719 (750)
81 PF00814 Peptidase_M22: Glycop 83.3 6 0.00013 32.8 7.3 114 33-160 135-255 (268)
82 PRK07058 acetate kinase; Provi 81.2 6.4 0.00014 34.7 6.9 50 103-153 294-344 (396)
83 PRK12379 propionate/acetate ki 80.2 8.7 0.00019 33.9 7.4 47 104-151 294-341 (396)
84 PRK12440 acetate kinase; Revie 79.4 8.6 0.00019 33.9 7.1 49 104-153 297-346 (397)
85 PRK03011 butyrate kinase; Prov 79.1 8.2 0.00018 33.5 6.9 59 102-160 269-329 (358)
86 PRK07157 acetate kinase; Provi 78.2 9.8 0.00021 33.6 7.1 50 103-152 295-345 (400)
87 PF01869 BcrAD_BadFG: BadF/Bad 77.3 14 0.0003 30.4 7.6 62 100-161 192-258 (271)
88 KOG0103|consensus 76.7 7.6 0.00016 36.4 6.2 62 99-161 305-366 (727)
89 TIGR02707 butyr_kinase butyrat 75.3 15 0.00033 31.8 7.5 60 102-161 267-328 (351)
90 PRK13329 pantothenate kinase; 75.0 18 0.00039 29.7 7.6 58 96-160 176-233 (249)
91 KOG2708|consensus 73.2 51 0.0011 27.2 11.0 120 23-153 143-279 (336)
92 PRK13321 pantothenate kinase; 72.4 10 0.00022 31.1 5.6 43 97-140 184-226 (256)
93 COG5146 PanK Pantothenate kina 72.4 23 0.00049 29.3 7.3 122 23-146 164-295 (342)
94 PRK13326 pantothenate kinase; 71.5 21 0.00045 29.6 7.2 57 97-160 186-242 (262)
95 PRK13327 pantothenate kinase; 71.4 12 0.00025 30.7 5.6 44 96-140 169-212 (242)
96 COG0849 ftsA Cell division ATP 71.1 11 0.00025 33.4 5.8 61 100-161 293-353 (418)
97 KOG2707|consensus 70.8 17 0.00038 31.5 6.6 62 98-160 272-340 (405)
98 PF01968 Hydantoinase_A: Hydan 70.5 9.7 0.00021 32.0 5.1 65 97-161 207-271 (290)
99 PRK13322 pantothenate kinase; 70.5 12 0.00027 30.6 5.6 44 96-140 175-218 (246)
100 TIGR00671 baf pantothenate kin 70.2 13 0.00029 30.3 5.7 44 97-141 176-219 (243)
101 PRK13328 pantothenate kinase; 68.7 14 0.0003 30.5 5.6 57 96-159 183-239 (255)
102 COG2192 Predicted carbamoyl tr 68.2 6.3 0.00014 36.0 3.6 55 102-161 264-319 (555)
103 PRK13331 pantothenate kinase; 68.0 14 0.00031 30.5 5.4 42 97-140 174-215 (251)
104 COG5012 Predicted cobalamin bi 67.8 12 0.00025 30.4 4.7 49 105-154 163-212 (227)
105 PF07592 DDE_Tnp_ISAZ013: Rhod 67.5 17 0.00038 30.9 5.9 79 76-161 134-222 (311)
106 PRK13318 pantothenate kinase; 66.8 15 0.00033 30.1 5.4 43 97-140 184-226 (258)
107 PRK12397 propionate kinase; Re 65.4 32 0.00069 30.5 7.3 47 104-151 298-345 (404)
108 PF00871 Acetate_kinase: Aceto 63.7 15 0.00034 32.2 5.1 56 103-158 295-352 (388)
109 PRK13320 pantothenate kinase; 62.1 46 0.001 27.2 7.4 54 97-158 174-227 (244)
110 COG5493 Uncharacterized conser 57.0 31 0.00067 27.5 5.2 62 91-161 167-230 (231)
111 COG1521 Pantothenate kinase ty 56.0 37 0.0008 28.1 5.8 44 96-140 181-224 (251)
112 PRK13324 pantothenate kinase; 55.6 34 0.00074 28.3 5.6 43 97-140 184-226 (258)
113 COG1058 CinA Predicted nucleot 53.2 27 0.00059 28.9 4.6 45 116-161 49-95 (255)
114 PRK05905 hypothetical protein; 49.5 29 0.00063 28.7 4.3 48 21-71 94-141 (258)
115 COG4820 EutJ Ethanolamine util 48.6 45 0.00097 27.0 4.9 55 102-162 206-260 (277)
116 KOG0680|consensus 47.6 21 0.00045 30.8 3.1 45 105-152 297-341 (400)
117 KOG2853|consensus 47.6 61 0.0013 28.5 5.9 72 90-161 27-121 (509)
118 PLN02666 5-oxoprolinase 44.5 1.3E+02 0.0028 30.9 8.5 64 97-162 454-520 (1275)
119 COG0443 DnaK Molecular chapero 44.3 52 0.0011 30.6 5.5 63 98-161 272-342 (579)
120 COG1660 Predicted P-loop-conta 43.8 55 0.0012 27.4 4.9 73 78-154 190-270 (286)
121 TIGR03492 conserved hypothetic 43.6 96 0.0021 27.2 6.9 56 97-158 63-118 (396)
122 PF02601 Exonuc_VII_L: Exonucl 42.8 31 0.00067 29.1 3.6 18 128-145 75-93 (319)
123 PRK03670 competence damage-ind 42.2 35 0.00075 28.2 3.6 33 129-161 61-95 (252)
124 PRK03673 hypothetical protein; 41.4 49 0.0011 29.3 4.6 34 128-161 60-95 (396)
125 cd00885 cinA Competence-damage 39.5 47 0.001 25.5 3.8 33 129-161 59-93 (170)
126 cd00012 ACTIN Actin; An ubiqui 39.4 18 0.00038 31.2 1.6 25 129-153 290-314 (371)
127 COG1219 ClpX ATP-dependent pro 38.8 77 0.0017 27.6 5.2 51 130-180 98-150 (408)
128 KOG0101|consensus 38.1 72 0.0016 29.9 5.3 52 100-156 311-362 (620)
129 KOG0745|consensus 37.4 78 0.0017 28.7 5.2 52 130-181 227-280 (564)
130 smart00268 ACTIN Actin. ACTIN 36.7 57 0.0012 28.0 4.3 47 130-176 293-350 (373)
131 COG1947 IspE 4-diphosphocytidy 36.2 62 0.0013 27.3 4.2 57 15-72 86-143 (289)
132 cd08550 GlyDH-like Glycerol_de 35.3 1E+02 0.0022 26.4 5.6 44 115-162 67-110 (349)
133 PRK13325 bifunctional biotin-- 34.4 97 0.0021 28.9 5.6 54 96-155 506-560 (592)
134 PF13685 Fe-ADH_2: Iron-contai 33.9 69 0.0015 26.4 4.1 35 127-162 74-108 (250)
135 PRK13917 plasmid segregation p 33.7 90 0.002 26.8 5.0 32 127-161 290-321 (344)
136 cd08172 GlyDH-like1 Glycerol d 33.7 1.1E+02 0.0024 26.1 5.6 33 128-161 76-108 (347)
137 COG0371 GldA Glycerol dehydrog 33.7 1E+02 0.0022 26.9 5.3 35 127-162 83-117 (360)
138 PRK04181 4-diphosphocytidyl-2- 32.6 81 0.0018 26.0 4.4 50 21-71 94-143 (257)
139 COG3535 Uncharacterized conser 31.7 1.3E+02 0.0029 26.0 5.5 44 117-160 84-127 (357)
140 PRK00286 xseA exodeoxyribonucl 30.0 68 0.0015 28.5 3.8 17 129-145 193-210 (438)
141 PRK14610 4-diphosphocytidyl-2- 29.7 91 0.002 26.0 4.3 48 21-71 92-139 (283)
142 TIGR03739 PRTRC_D PRTRC system 29.3 2.1E+02 0.0045 24.1 6.5 33 127-161 272-305 (320)
143 PRK09423 gldA glycerol dehydro 28.7 1.4E+02 0.0031 25.7 5.5 42 116-161 75-116 (366)
144 PF12523 DUF3725: Protein of u 28.6 89 0.0019 20.3 3.1 28 97-124 19-46 (74)
145 TIGR00200 cinA_nterm competenc 28.6 1.1E+02 0.0024 27.1 4.8 34 128-161 59-94 (413)
146 cd08170 GlyDH Glycerol dehydro 28.4 1.6E+02 0.0036 25.1 5.8 33 128-161 77-109 (351)
147 PLN00124 succinyl-CoA ligase [ 28.3 3E+02 0.0065 24.6 7.5 56 127-182 344-418 (422)
148 TIGR03123 one_C_unchar_1 proba 28.3 3.1E+02 0.0066 23.5 7.2 55 99-158 250-304 (318)
149 PF00205 TPP_enzyme_M: Thiamin 27.0 1.4E+02 0.0031 21.4 4.6 43 115-161 2-47 (137)
150 TIGR00315 cdhB CO dehydrogenas 27.0 1.4E+02 0.0031 22.9 4.6 31 130-160 29-62 (162)
151 PRK10586 putative oxidoreducta 26.7 1.6E+02 0.0035 25.5 5.4 33 128-161 86-118 (362)
152 PRK01215 competence damage-ind 26.3 1.3E+02 0.0027 25.0 4.5 30 130-159 64-95 (264)
153 PF06406 StbA: StbA protein; 26.0 1.9E+02 0.0041 24.4 5.7 32 128-161 272-306 (318)
154 cd08171 GlyDH-like2 Glycerol d 26.0 1.7E+02 0.0037 25.0 5.4 33 128-161 78-110 (345)
155 PRK09557 fructokinase; Reviewe 25.3 2.8E+02 0.006 22.9 6.5 38 106-145 224-261 (301)
156 cd07766 DHQ_Fe-ADH Dehydroquin 24.6 1.8E+02 0.0038 24.5 5.3 33 128-161 78-112 (332)
157 PF06189 5-nucleotidase: 5'-nu 24.3 34 0.00073 28.5 0.7 34 117-151 203-236 (264)
158 PLN02235 ATP citrate (pro-S)-l 24.0 4.6E+02 0.0099 23.5 7.7 88 83-182 327-417 (423)
159 PF00070 Pyr_redox: Pyridine n 24.0 2E+02 0.0043 18.4 4.4 35 131-166 1-35 (80)
160 TIGR00237 xseA exodeoxyribonuc 23.8 97 0.0021 27.6 3.6 30 129-158 188-224 (432)
161 KOG0104|consensus 23.2 89 0.0019 30.1 3.3 28 128-155 364-391 (902)
162 PRK14477 bifunctional nitrogen 23.1 1E+02 0.0022 30.5 3.8 100 51-157 659-764 (917)
163 TIGR03281 methan_mark_12 putat 22.8 1.5E+02 0.0032 25.5 4.2 60 104-168 243-306 (326)
164 PRK00976 hypothetical protein; 22.7 3.5E+02 0.0075 23.3 6.5 49 105-155 242-292 (326)
165 cd08174 G1PDH-like Glycerol-1- 22.7 2.2E+02 0.0047 24.1 5.4 33 128-161 75-107 (331)
166 KOG0100|consensus 22.4 2.8E+02 0.0062 25.0 6.0 32 127-158 361-393 (663)
167 TIGR01286 nifK nitrogenase mol 22.4 1.6E+02 0.0035 27.0 4.8 99 52-156 236-339 (515)
168 PF14450 FtsA: Cell division p 22.3 43 0.00093 23.9 0.9 53 108-160 46-98 (120)
169 PRK00549 competence damage-ind 22.2 1.2E+02 0.0026 26.8 3.9 34 128-161 59-94 (414)
170 PF06032 DUF917: Protein of un 21.7 2.1E+02 0.0045 24.9 5.1 48 113-160 76-123 (353)
171 PF10876 DUF2669: Protein of u 21.1 95 0.0021 22.9 2.4 24 95-118 92-115 (133)
172 KOG3286|consensus 21.0 75 0.0016 25.4 2.0 45 109-153 77-121 (226)
173 COG4080 SpoU rRNA Methylase fa 20.9 3.7E+02 0.008 20.2 6.2 36 125-160 24-63 (147)
174 COG3960 Glyoxylate carboligase 20.9 1.9E+02 0.0041 25.3 4.5 29 130-158 205-236 (592)
175 PRK08118 topology modulation p 20.2 1.4E+02 0.0031 22.6 3.5 31 130-160 2-33 (167)
No 1
>PLN02295 glycerol kinase
Probab=100.00 E-value=1.3e-39 Score=291.91 Aligned_cols=193 Identities=49% Similarity=0.725 Sum_probs=168.1
Q ss_pred CCCceeeeeeecC-CCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCC
Q psy9355 8 RQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDA 86 (204)
Q Consensus 8 ~~g~~~~~~~~~~-~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~ 86 (204)
..+.+.+++|.++ ..|+.|+++++++++|.+++|+++.++...+++++++++++.++++|++|+|||.|+|+|+||+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~~~a~~~~g~~gl~f~P~l~G~r~P~~~~~a 365 (512)
T PLN02295 286 KHGLLTTVAYKLGPDAPTNYALEGSVAIAGAAVQWLRDNLGIIKSASEIEALAATVDDTGGVYFVPAFSGLFAPRWRDDA 365 (512)
T ss_pred CCCceEEEEEEecCCCCceEEEechhhhhHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCCceEEeCcccCCCCCcCCCCC
Confidence 4577888888764 237899999999999999999999886434577888888777777789999999999999999999
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 87 RGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD-----CGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 87 ~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~-----~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
||.|+||+.+|+++||+|||+|||||++|+++|.|++. .+.++++|+++||+++|++|+||+||++|+||+++..
T Consensus 366 rg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~~ 445 (512)
T PLN02295 366 RGVCVGITRFTNKAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPAD 445 (512)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEecCc
Confidence 99999999999999999999999999999999999864 2346889999999999999999999999999998775
Q ss_pred C----------CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355 162 G----------GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201 (204)
Q Consensus 162 ~----------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~ 201 (204)
. ++++.|+|++++++.+++++..++|+|+++..+ |++.+
T Consensus 446 ~e~~alGaA~~A~~~~G~~~~~~~~~~~~~~~~~~~~P~~~~~~-y~~~y 494 (512)
T PLN02295 446 IETTALGAAYAAGLAVGLWTEEEIFASEKWKNTTTFRPKLDEEE-RAKRY 494 (512)
T ss_pred cccHHHHHHHHHHhhcCcCCCHHHHHHhccCCCeEECCCCCHHH-HHHHH
Confidence 2 235778899988776688898999999999888 77654
No 2
>PRK00047 glpK glycerol kinase; Provisional
Probab=100.00 E-value=4.4e-39 Score=287.75 Aligned_cols=191 Identities=43% Similarity=0.689 Sum_probs=166.5
Q ss_pred CCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCc
Q psy9355 8 RQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDAR 87 (204)
Q Consensus 8 ~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~ 87 (204)
..+.+.+++|.++. ++.|+++++++++|.+++|+++.++....+++++++++..+++++++|+|||.|+|+|+||+++|
T Consensus 284 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~g~~l~W~~~~~~~~~~~~~~~~~a~~~~~~~gl~~lP~l~G~r~P~~d~~ar 362 (498)
T PRK00047 284 ENGLLTTIAWGIDG-KVVYALEGSIFVAGSAIQWLRDGLKIISDASDSEALARKVEDNDGVYVVPAFTGLGAPYWDSDAR 362 (498)
T ss_pred CCCceeEEEEEcCC-CcEEEEEeeHhhHHHHHHHHHHHhcCCCCHHHHHHHHhcCCCCCCEEEeCccccCCCCCCCCCCc
Confidence 45677778887542 23799999999999999999998864345677788887777778999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC-----
Q psy9355 88 GIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG----- 162 (204)
Q Consensus 88 g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~----- 162 (204)
|.|+|++.+|+++||+|||+|||||.+|+++|.|++..|.++++|+++||++||++|+||+||++|+||+++...
T Consensus 363 g~~~Gl~~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~a~ 442 (498)
T PRK00047 363 GAIFGLTRGTTKEHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADILGVPVERPVVAETTAL 442 (498)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhhCCeeEecCcccchHH
Confidence 999999999999999999999999999999999986458889999999999999999999999999999987652
Q ss_pred -----CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355 163 -----GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201 (204)
Q Consensus 163 -----~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~ 201 (204)
++++.|.|+|++++ +++++..++|+|++++++ |++.+
T Consensus 443 GaA~~A~~~~G~~~~~~~~-~~~~~~~~~~~P~~~~~~-y~~~~ 484 (498)
T PRK00047 443 GAAYLAGLAVGFWKDLDEL-KEQWKIDRRFEPQMDEEE-REKLY 484 (498)
T ss_pred HHHHHHhhhcCcCCCHHHH-HhhcCCCeEECCCCCHHH-HHHHH
Confidence 23678899999987 788888999999999877 77654
No 3
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=100.00 E-value=4.5e-39 Score=288.08 Aligned_cols=193 Identities=49% Similarity=0.756 Sum_probs=169.3
Q ss_pred CCCceeeeeeecC-CCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCC
Q psy9355 8 RQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDA 86 (204)
Q Consensus 8 ~~g~~~~~~~~~~-~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~ 86 (204)
..+++..+||.++ ..|+.|++++++.++|.+++|+++.++...+++++++++++.+++++++|+|||.|+|+|+||+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~a~~~~g~~gl~~~P~l~G~r~P~~~~~a 364 (504)
T PTZ00294 285 KHGLLTTVCYQLGPNGPTVYALEGSIAVAGAGVEWLRDNMGLISHPSEIEKLARSVKDTGGVVFVPAFSGLFAPYWRPDA 364 (504)
T ss_pred CCCceEEEEEEecCCCCcEEEEechhhhhHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCEEEeCcccCCCCCCCCCCC
Confidence 4567778888763 336799999999999999999999887545688888888877788899999999999999999999
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC----
Q psy9355 87 RGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG---- 162 (204)
Q Consensus 87 ~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---- 162 (204)
||.|+|++.+|+++||+|||+|||||.+|+++|.|++..|.++++|+++||+++|++|+||+||++|+||+++...
T Consensus 365 rg~~~Gl~~~~~~~~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~~~e~~a 444 (504)
T PTZ00294 365 RGTIVGMTLKTTRAHIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADILGKDIVVPEMAETTA 444 (504)
T ss_pred CEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHhCCceEecCcccchH
Confidence 9999999999999999999999999999999999987558888999999999999999999999999999988762
Q ss_pred ------CcccccccCCHHHHHHHhhc-cCeEeecCcchhhhhhccCC
Q psy9355 163 ------GKDGGKYITDVSNASRTMLM-NIETLEWDPMLCGVWEINMQ 202 (204)
Q Consensus 163 ------~a~g~g~~~~~~~a~~~~~~-~~~~~~P~~~~~~~y~~~~~ 202 (204)
++++.|.|+|++++. ++++ ..++|+|+++.++ |++.++
T Consensus 445 lGaAl~aa~a~G~~~~~~~~~-~~~~~~~~~~~P~~~~~~-y~~~~~ 489 (504)
T PTZ00294 445 LGAALLAGLAVGVWKSLEEVK-KLIRRSNSTFSPQMSAEE-RKAIYK 489 (504)
T ss_pred HHHHHHHHhhcCccCCHHHHH-HhccCCCcEECCCCCHHH-HHHHHH
Confidence 135788999999875 5555 6789999999999 888654
No 4
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=100.00 E-value=1.1e-38 Score=284.91 Aligned_cols=192 Identities=52% Similarity=0.776 Sum_probs=167.1
Q ss_pred CCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCc
Q psy9355 8 RQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDAR 87 (204)
Q Consensus 8 ~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~ 87 (204)
..+.+.+++|.++..+..|+++|++.++|.+++|+++.++...++++++++++..+++++++|+|||.|+|+|+||+++|
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~W~~~~~~~~~~~~~~~~~a~~~~g~~g~~~~P~l~G~r~P~~~~~ar 358 (493)
T TIGR01311 279 KHGLLTTVAYQLGGKKPVYALEGSVFVAGAAVQWLRDNLKLIKHAAESEALARSVEDNGGVYFVPAFTGLGAPYWDPDAR 358 (493)
T ss_pred CCCceEEEEEecCCCCceEEEEeehhhhHHHHHHHHHHhCCCCCHHHHHHHHhcCCCCCCEEEeCcccCCCCCcCCCCCc
Confidence 34566778887542111599999999999999999998875456778888887777888999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC-----
Q psy9355 88 GIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG----- 162 (204)
Q Consensus 88 g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~----- 162 (204)
|+|+|++.+|+++||+|||+|||||.+|++++.|++..|.++++|+++||++||++|+||+||++|+||++++..
T Consensus 359 g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~~e~~al 438 (493)
T TIGR01311 359 GAIFGLTRGTTKAHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADILGVPVVRPKVTETTAL 438 (493)
T ss_pred EEEECcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhcCCeeEecCCCcchHH
Confidence 999999999999999999999999999999999987558888999999999999999999999999999987652
Q ss_pred -----CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355 163 -----GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201 (204)
Q Consensus 163 -----~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~ 201 (204)
++++.|.|+|++++ +++++..++|+|+++..+ |++.+
T Consensus 439 GaA~~a~~~~G~~~~~~~a-~~~~~~~~~~~P~~~~~~-y~~~~ 480 (493)
T TIGR01311 439 GAAYAAGLAVGYWKSLEEI-EALWRVEKTFEPEMDEEE-REARY 480 (493)
T ss_pred HHHHHHHhhcCcCCCHHHH-HHhcCCCcEECCCCCHHH-HHHHH
Confidence 23678999999996 899999999999999877 77754
No 5
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=100.00 E-value=4.2e-38 Score=270.84 Aligned_cols=187 Identities=49% Similarity=0.770 Sum_probs=171.9
Q ss_pred cCCCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCC
Q psy9355 4 KVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQ 83 (204)
Q Consensus 4 ~~~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~ 83 (204)
++.|++||++|++|.++. +-.|.+||++..+|.+++||++.+++..+..+.+.+|++++.++|++|.|.|.|.++||||
T Consensus 279 ~~~S~~~LLtTIa~~l~g-k~~YALEGsif~aGaavqWLrd~L~~i~~a~~~e~~A~~~~~~~gVy~VPAFtGLgAPyWd 357 (499)
T COG0554 279 PVRSENGLLTTIAWGLDG-KVTYALEGSIFVAGAAVQWLRDGLGLIDDASDSEELAESVEDNGGVYFVPAFTGLGAPYWD 357 (499)
T ss_pred cccCCCCceeEEEeccCC-eEEEEEecceeehhhHHHHHHHhcCccCchhHHHHHHhccCCCCceEEEcccccCCCCCcC
Confidence 477889999999999985 5789999999999999999999999888889999999998878899999999999999999
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC-
Q psy9355 84 PDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG- 162 (204)
Q Consensus 84 ~~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~- 162 (204)
+++||.|+||+..++++|++||++|||||+.+++++.|++..+.+++++++.||.++|+++||++||++|+||++|...
T Consensus 358 ~~aRGai~Gltrgt~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~~E 437 (499)
T COG0554 358 SDARGAIFGLTRGTTKAHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADILGVPVERPVVLE 437 (499)
T ss_pred cccceeEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHhCCeeeccccch
Confidence 9999999999999999999999999999999999999999888889999999999999999999999999999999973
Q ss_pred ---------CcccccccCCHHHHHHHhhccCeEeecCcc
Q psy9355 163 ---------GKDGGKYITDVSNASRTMLMNIETLEWDPM 192 (204)
Q Consensus 163 ---------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~ 192 (204)
+.++.|+++|.+|.. +.....+.|+|..+
T Consensus 438 tTAlGaA~lAGla~G~w~~~~el~-~~~~~~~~f~p~m~ 475 (499)
T COG0554 438 TTALGAAYLAGLAVGFWKDLDELA-ELWPLDKEFEPGMD 475 (499)
T ss_pred hhHHHHHHHHhhhhCcCCCHHHHH-hhhcccceeCCCCC
Confidence 235678899999865 55577899999864
No 6
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=100.00 E-value=1.5e-38 Score=286.82 Aligned_cols=179 Identities=23% Similarity=0.304 Sum_probs=155.0
Q ss_pred CcceEEecchhhchhHHHHHHHHhcCCC------------CCHHHHHH----HHHhcC-C-----CCCeEEecCCCCCCC
Q psy9355 22 EPVVYALEGSVAVAGAAMNWLRDNVGMV------------TGVEEIES----LAESHR-H-----TGDVYFVPAFSGLYA 79 (204)
Q Consensus 22 ~p~~y~~~g~~~~~G~~~~W~~~~~~~~------------~~~~~l~~----~a~~~~-~-----~~g~~~~P~l~G~r~ 79 (204)
.|+.|+++++++++|.+++|+++.+... ..|+.+++ ++++.+ + ++|++|+|||.|+|+
T Consensus 313 ~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gl~flP~l~G~r~ 392 (541)
T TIGR01315 313 IPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAKTNAPSISYLVRHFHVYPDLWGNRS 392 (541)
T ss_pred CCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhhcccCccccCCCceEEccccccCcC
Confidence 3688999999999999999999876411 23544444 344433 3 378999999999999
Q ss_pred CCCCCCCcEEEEcCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcE
Q psy9355 80 PYWQPDARGIICGITEDTTR---GHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156 (204)
Q Consensus 80 P~~~~~~~g~~~Gl~~~~~~---~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv 156 (204)
|+|||++||.|+||+.+|++ .||+||++|||||++|+++|.|++ .|.++++|+++||++||++|+||+|||+|+||
T Consensus 393 P~~dp~arG~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~-~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV 471 (541)
T TIGR01315 393 PIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNT-AGHTIKSIFMSGGQCQNPLLMQLIADACDMPV 471 (541)
T ss_pred CCCCCCCceEEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCccEEEEecCcccCHHHHHHHHHHHCCee
Confidence 99999999999999999999 899999999999999999999987 58889999999999999999999999999999
Q ss_pred EeccCC----------CcccccccCCHHHHHHHhhccCeEeecCcchh-hhhhccC
Q psy9355 157 GKNLTG----------GKDGGKYITDVSNASRTMLMNIETLEWDPMLC-GVWEINM 201 (204)
Q Consensus 157 ~~~~~~----------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~-~~y~~~~ 201 (204)
+++... ++++.|.|+|++++.+.|++..++|+|+++.+ +.|++.+
T Consensus 472 ~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~Y~~~y 527 (541)
T TIGR01315 472 LIPYVNEAVLHGAAMLGAKAAGTTESLWDAMDRMSKPGKTVWPRGDPAKKLHDRKY 527 (541)
T ss_pred EecChhHHHHHHHHHHHHHhcCccCCHHHHHHHhccCCcEEcCCcchhHHHHHHHH
Confidence 998863 23577899999998889988899999999998 8888755
No 7
>PRK15027 xylulokinase; Provisional
Probab=100.00 E-value=2.9e-38 Score=281.60 Aligned_cols=186 Identities=19% Similarity=0.302 Sum_probs=160.8
Q ss_pred CceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCCCcE
Q psy9355 10 GLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDARG 88 (204)
Q Consensus 10 g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~~~g 88 (204)
+.+..+++. .|+.|.+++.+.++|.+++|+++.++. ..++++++.+++.+ ++++++|+|||.|+|+|+||+++||
T Consensus 272 ~~~~~~~~~---~~~~~~~~~~~~~~g~~~~W~~~~~~~-~~~~~~~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~arg 347 (484)
T PRK15027 272 SAVHSFCHA---LPQRWHLMSVMLSAASCLDWAAKLTGL-SNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKG 347 (484)
T ss_pred hceeeccee---cCCceEEEEEehhhHHHHHHHHHHhCC-ccHHHHHHHHhhCCCCCCceEEecccccCCCcCCCCCcce
Confidence 334455654 368899999999999999999998864 45777777777665 8889999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC---CC--
Q psy9355 89 IICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT---GG-- 163 (204)
Q Consensus 89 ~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~---~~-- 163 (204)
+|+||+.+|+++||+||++|||||.+++++|.+++ .|.++++|+++||++||++|+||+||++|+||++... ++
T Consensus 348 ~f~gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~ 426 (484)
T PRK15027 348 VFFGLTHQHGPNELARAVLEGVGYALADGMDVVHA-CGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPAL 426 (484)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHH
Confidence 99999999999999999999999999999999987 5888999999999999999999999999999966532 22
Q ss_pred ------cccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355 164 ------KDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201 (204)
Q Consensus 164 ------a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~ 201 (204)
+++.|.++|++++. ++++..++|+||+++++.|++.+
T Consensus 427 GaA~lA~~~~G~~~~~~~~~-~~~~~~~~~~P~~~~~~~Y~~~~ 469 (484)
T PRK15027 427 GAARLAQIAANPEKSLIELL-PQLPLEQSHLPDAQRYAAYQPRR 469 (484)
T ss_pred HHHHHHHHhcCCcCCHHHHH-hhcCCCceECCCHHHHHHHHHHH
Confidence 25778999999875 66688899999999999998754
No 8
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=100.00 E-value=1.4e-37 Score=278.57 Aligned_cols=184 Identities=22% Similarity=0.317 Sum_probs=162.3
Q ss_pred eeeecCCCcceEEecchhhchhHHHHHHHHhcCC----------CCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCC
Q psy9355 15 VAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGM----------VTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQ 83 (204)
Q Consensus 15 ~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~----------~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~ 83 (204)
++|.++ ++.|+.+++++++|.+++|+++.+.. ...|+.+++++++.+ ++++++|+|||.|+|+|+||
T Consensus 279 ~~~~~~--~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~~ 356 (505)
T TIGR01314 279 FCYALT--KEHWVIGGPVNNGGDVLRWARDEIFDSEIETATRLGIDPYDVLTEIAARVSPGADGLLFHPYLAGERAPLWN 356 (505)
T ss_pred EEEEec--CCcEEEEeeecchHhHHHHHHHHhhhhhhhhhhhcCCCHHHHHHHHHhhCCCCCCceEEecccccCCCCCCC
Confidence 556544 37899999999999999999987642 134788999888776 78889999999999999999
Q ss_pred CCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC-
Q psy9355 84 PDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG- 162 (204)
Q Consensus 84 ~~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~- 162 (204)
+++||+|+||+.+|+++||+||++|||||.++++++.+++..|.++++|+++||+++|++|+||+||++|+||+++...
T Consensus 357 ~~~rg~f~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~e 436 (505)
T TIGR01314 357 ANARGSFFGLTYSHKKEHMIRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESYE 436 (505)
T ss_pred CCccEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCCC
Confidence 9999999999999999999999999999999999999977668889999999999999999999999999999987752
Q ss_pred -C--------cccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355 163 -G--------KDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201 (204)
Q Consensus 163 -~--------a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~ 201 (204)
+ +++.|.++|++++ .++++..++|+|++++++.|++.+
T Consensus 437 ~~a~GaA~la~~~~G~~~~~~~~-~~~~~~~~~~~P~~~~~~~Y~~~y 483 (505)
T TIGR01314 437 SSCLGACILGLKALGLIEDFSEV-STMVGTTETHTPIEKNFEIYREIS 483 (505)
T ss_pred cchHHHHHHHHHhcCccCCHHHH-HHhcCCCceECcCHHHHHHHHHHH
Confidence 2 2577899999986 788899999999999999998754
No 9
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=100.00 E-value=1.8e-37 Score=276.00 Aligned_cols=191 Identities=25% Similarity=0.344 Sum_probs=169.0
Q ss_pred CCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCCC
Q psy9355 8 RQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDA 86 (204)
Q Consensus 8 ~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~~ 86 (204)
..+.+..++|.. |+.|++++++.++|.+++|+++.++. .+++.+++++++.+ ++++++|+||+.|+|.|+||+++
T Consensus 273 ~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~w~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~p~~~G~r~P~~~~~~ 348 (481)
T TIGR01312 273 PAGAVHGFCHAL---PGGWLPMGVTLSATSSLEWFRELFGK-EDVEALNELAEQSPPGAEGVTFLPYLNGERTPHLDPQA 348 (481)
T ss_pred cccceeeeeeec---CCceEEEeEehhhHHHHHHHHHHhCC-CcHHHHHHHHhcCCCCCCCeEEecccccCCCCCCCCCc
Confidence 345566777763 57899999999999999999998863 46888999888876 77889999999999999999999
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC--C-
Q psy9355 87 RGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG--G- 163 (204)
Q Consensus 87 ~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~--~- 163 (204)
+|+|+|++.+|+++|++||++|||||.+|++++.|++..+.++++|+++||++||++|+||+||++|+||++++.. +
T Consensus 349 ~g~~~gl~~~~~~~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~~~e~~a 428 (481)
T TIGR01312 349 RGSFIGLTHNTTRADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPEGEEGPA 428 (481)
T ss_pred ceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHhCCceeecCCCcchH
Confidence 9999999999999999999999999999999999987445788999999999999999999999999999998762 1
Q ss_pred -------cccccccCCHHHHHHHhhccCeEeecCcchhhhhhccCC
Q psy9355 164 -------KDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINMQ 202 (204)
Q Consensus 164 -------a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~~ 202 (204)
+.+.|.|+|++++.+.+++..+.|+|+++.++.|++.++
T Consensus 429 ~GaA~~a~~~~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~~ 474 (481)
T TIGR01312 429 LGAAILAAWALGEKDLAALCSEAVVKQTESVLPIAENVEAYEELYE 474 (481)
T ss_pred HHHHHHHHHhcCCCCCHHHHHhhccCCCceECCCHHHHHHHHHHHH
Confidence 256788999999989999999999999999998887653
No 10
>PRK04123 ribulokinase; Provisional
Probab=100.00 E-value=1e-37 Score=281.84 Aligned_cols=190 Identities=22% Similarity=0.279 Sum_probs=163.7
Q ss_pred eeeeeeecC--CCcceEEecchhhchhHHHHHHHHhcCC-----------CCCHHHHHHHHHhcC-CCCCeEEecCCCCC
Q psy9355 12 LTTVAFKLG--DEPVVYALEGSVAVAGAAMNWLRDNVGM-----------VTGVEEIESLAESHR-HTGDVYFVPAFSGL 77 (204)
Q Consensus 12 ~~~~~~~~~--~~p~~y~~~g~~~~~G~~~~W~~~~~~~-----------~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~ 77 (204)
.+.+++.+. -.|+.|.++++++++|.+++||++.++. ...|+++++++++.+ ++++++|+|||.|+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~f~P~l~Ge 388 (548)
T PRK04123 309 VPGICGQVDGSIVPGLIGYEAGQSAVGDIFAWFARLLVPPEYKDEAEARGKQLLELLTEAAAKQPPGEHGLVALDWFNGR 388 (548)
T ss_pred cCceeecccCcccCCeeeecccccchHHHHHHHHHhcchHhHHHHHHhcCCcHHHHHHHHHHhcCCCCCceEEcccccCC
Confidence 445555432 2368899999999999999999998741 134788888888776 88899999999999
Q ss_pred CCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCc-cccHHHHHHHHhhhCCcE
Q psy9355 78 YAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGM-TANKHLMQTQADLCGIPV 156 (204)
Q Consensus 78 r~P~~~~~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGg-a~s~~~~Qi~Adv~g~pv 156 (204)
|+|+|||++||.|+||+.+|+++||+|||+|||+|.+++++|.|++ .+.++++|+++||+ +||++|+||+||++|+||
T Consensus 389 r~P~~~~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~~~~~e~l~~-~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV 467 (548)
T PRK04123 389 RTPLADQRLKGVITGLTLGTDAPDIYRALIEATAFGTRAIMECFED-QGVPVEEVIAAGGIARKNPVLMQIYADVLNRPI 467 (548)
T ss_pred CCCCCCCCCceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcceEEEeCCCcccCHHHHHHHHHhcCCce
Confidence 9999999999999999999999999999999999999999999987 68888999999999 999999999999999999
Q ss_pred EeccCC--C--------cccccccCCHHHHHHHhh-ccCeEeecCcchhhhhhccCC
Q psy9355 157 GKNLTG--G--------KDGGKYITDVSNASRTML-MNIETLEWDPMLCGVWEINMQ 202 (204)
Q Consensus 157 ~~~~~~--~--------a~g~g~~~~~~~a~~~~~-~~~~~~~P~~~~~~~y~~~~~ 202 (204)
+++... + +++.|.|+|++++.+.|+ ...++|+|+++.++.|++.++
T Consensus 468 ~~~~~~e~~alGaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~~y~ 524 (548)
T PRK04123 468 QVVASDQCPALGAAIFAAVAAGAYPDIPEAQQAMASPVEKTYQPDPENVARYEQLYQ 524 (548)
T ss_pred EecCccccchHHHHHHHHHHhccCCCHHHHHHHhhccCceEEecCHHHHHHHHHHHH
Confidence 887752 2 256788999999888887 455779999999888887653
No 11
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=100.00 E-value=3.4e-37 Score=277.73 Aligned_cols=188 Identities=21% Similarity=0.229 Sum_probs=162.9
Q ss_pred eeeeecC--CCcceEEecchhhchhHHHHHHHHhcCCC-----------CCHHHHHHHHHhcC-CCCCeEEecCCCCCCC
Q psy9355 14 TVAFKLG--DEPVVYALEGSVAVAGAAMNWLRDNVGMV-----------TGVEEIESLAESHR-HTGDVYFVPAFSGLYA 79 (204)
Q Consensus 14 ~~~~~~~--~~p~~y~~~g~~~~~G~~~~W~~~~~~~~-----------~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~ 79 (204)
.+++.++ -.|+.|.++++++++|.+++|+++.+... ..|+.|++.+++.+ ++++++|+|||.|+|+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~p~g~~gllflP~l~Ger~ 387 (536)
T TIGR01234 308 GMCGVVDGGIVPGFIGYEAGQSAVGDIFAWFGKVCVPPELKTEANASQKQLHEALSEAAAKQPSGEHGLVALDWFNGNRS 387 (536)
T ss_pred ceeeeccCcccCCeeEEeccccchHHHHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCeEecchhccCCC
Confidence 4555432 23688999999999999999999987421 23788888887776 8889999999999999
Q ss_pred CCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCc-cccHHHHHHHHhhhCCcEEe
Q psy9355 80 PYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGM-TANKHLMQTQADLCGIPVGK 158 (204)
Q Consensus 80 P~~~~~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGg-a~s~~~~Qi~Adv~g~pv~~ 158 (204)
|+||+++||.|+|++.+|++.||+|||+|||||.+++++|.|++ .|.++++|+++||+ ++|++|+||+||++|+||++
T Consensus 388 P~~d~~arG~~~Gl~~~~~~~~~~RAvlEgia~~~~~~l~~l~~-~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~ 466 (536)
T TIGR01234 388 PLVDQRLKGVITGLTLATDAPLLYRALIEATAFGTRMIMETFTD-SGVPVEELMAAGGIARKNPVIMQIYADVTNRPLQI 466 (536)
T ss_pred CCCCCcceEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcceEEEeCCccccCHHHHHHHHHhhCCeeEe
Confidence 99999999999999999999999999999999999999999987 68889999999999 99999999999999999998
Q ss_pred ccCC----------CcccccccCCHHHHHHHhh-ccCeEeecCcchhhhhhccCC
Q psy9355 159 NLTG----------GKDGGKYITDVSNASRTML-MNIETLEWDPMLCGVWEINMQ 202 (204)
Q Consensus 159 ~~~~----------~a~g~g~~~~~~~a~~~~~-~~~~~~~P~~~~~~~y~~~~~ 202 (204)
+... ++++.|.|+|++++.+.++ +..++|+|+++.++.|++.++
T Consensus 467 ~~~~e~~a~GaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~~y~ 521 (536)
T TIGR01234 467 VASDQAPALGAAIFAAVAAGVYADIPSAQAKMGSAVEKTLTPCSENAQRYEQLYA 521 (536)
T ss_pred ccCCcchhHHHHHHHHHHcCCcCCHHHHHHHhhccCCceECCChhHHHHHHHHHH
Confidence 7752 1257788999999888887 668899999999888887553
No 12
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=100.00 E-value=6.4e-35 Score=262.15 Aligned_cols=177 Identities=19% Similarity=0.225 Sum_probs=154.4
Q ss_pred cceEEecchhhchhHHHHHHHHhcCCC----------CCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCCCcEEEE
Q psy9355 23 PVVYALEGSVAVAGAAMNWLRDNVGMV----------TGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDARGIIC 91 (204)
Q Consensus 23 p~~y~~~g~~~~~G~~~~W~~~~~~~~----------~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~~~g~~~ 91 (204)
|+.|.+++.++++|.+++||++.+... ..|+++++++++.| +++++ +|||.|++.|.+++.++|+|+
T Consensus 292 ~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl--~P~l~g~~~~~~~~~~~g~f~ 369 (520)
T PRK10939 292 PGMVQAESISFFTGLTMRWFRDAFCAEEKLLAERLGIDAYSLLEEMASRVPVGSHGI--IPIFSDVMRFKSWYHAAPSFI 369 (520)
T ss_pred CCcceEeeeeccceeeeehHHhhhchHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCC--cccccCCCCCCCCcccceeEE
Confidence 688999999999999999999876421 34788999888876 77766 599999987655568999999
Q ss_pred cCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC------
Q psy9355 92 GITEDT---TRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG------ 162 (204)
Q Consensus 92 Gl~~~~---~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~------ 162 (204)
||+.+| +++||+||++|||||.+|++++.+++..|.++++|+++||+++|++|+||+|||+|+||++++..
T Consensus 370 Gl~~~~~~~~~~~~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~alG 449 (520)
T PRK10939 370 NLSIDPEKCNKATLFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVKEATALG 449 (520)
T ss_pred ccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCcccCHHHHHHHHHhcCCeeEEecccCchHHH
Confidence 999987 89999999999999999999999987558889999999999999999999999999999998852
Q ss_pred ----CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355 163 ----GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201 (204)
Q Consensus 163 ----~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~ 201 (204)
++++.|+|+|++++.+.+++..++|+|+++..+.|++.+
T Consensus 450 aA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~y 492 (520)
T PRK10939 450 CAIAAGVGAGIYSSLAETGERLVRWERTFEPNPENHELYQEAK 492 (520)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHcccCceECcCHHHHHHHHHHH
Confidence 235778999999998899888999999999988888754
No 13
>PRK10331 L-fuculokinase; Provisional
Probab=100.00 E-value=1.1e-32 Score=245.02 Aligned_cols=167 Identities=20% Similarity=0.151 Sum_probs=143.8
Q ss_pred cceEEecchhhchhHHHHHHHHhcCC-CCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCCCcEEEEcCCCCCCHH
Q psy9355 23 PVVYALEGSVAVAGAAMNWLRDNVGM-VTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRG 100 (204)
Q Consensus 23 p~~y~~~g~~~~~G~~~~W~~~~~~~-~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~~ 100 (204)
++.|..++.... |.+++|+++.++. ...|+.|++++++.+ ++++++|+|+|.|+| ||+|+||+.+|+++
T Consensus 291 ~~~~~~~~~~~~-g~~~~W~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~p~~~g~~--------rg~~~Gl~~~~~~~ 361 (470)
T PRK10331 291 SGLYNPGMQWLA-SGVLEWVRKLFWTAETPYQTMIEEARAIPPGADGVKMQCDLLACQ--------NAGWQGVTLNTTRG 361 (470)
T ss_pred CceeeechhhHH-HHHHHHHHHHhcccCchHHHHHHHHhcCCCCCCceEecccccccC--------ceeEECCCCCcCHH
Confidence 567766554444 4589999998753 245889999888776 888999999999887 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC----------Cccccccc
Q psy9355 101 HIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG----------GKDGGKYI 170 (204)
Q Consensus 101 ~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~----------~a~g~g~~ 170 (204)
||+||++|||||++|+++|.|++..+.++++|+++||++||++|+||+||++|+||++++.. ++++.|.|
T Consensus 362 ~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~a~GaA~la~~~~G~~ 441 (470)
T PRK10331 362 HFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLDIPIKVLDDAETTVAGAAMFGWYGVGEF 441 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHHhcCCC
Confidence 99999999999999999999987435678999999999999999999999999999988762 13578999
Q ss_pred CCHHHHHHHhhccCeEeecCcchhhhhhc
Q psy9355 171 TDVSNASRTMLMNIETLEWDPMLCGVWEI 199 (204)
Q Consensus 171 ~~~~~a~~~~~~~~~~~~P~~~~~~~y~~ 199 (204)
+|++++.+.|.+..++|+|+ .+.+.|++
T Consensus 442 ~~~~~a~~~~~~~~~~~~P~-~~~~~y~~ 469 (470)
T PRK10331 442 SSPEQARAQMKYQYRYFYPQ-TEPEFIEE 469 (470)
T ss_pred CCHHHHHHHHhhcceeECCC-ccHhhhhc
Confidence 99999988998878899999 78888875
No 14
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=100.00 E-value=3.4e-32 Score=215.54 Aligned_cols=161 Identities=37% Similarity=0.639 Sum_probs=134.6
Q ss_pred CCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCC---CCC----HHHHHH--HHHhcCCCCCeEEecCCCC
Q psy9355 6 DSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGM---VTG----VEEIES--LAESHRHTGDVYFVPAFSG 76 (204)
Q Consensus 6 ~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~---~~~----~~~l~~--~a~~~~~~~g~~~~P~l~G 76 (204)
.+..+++..+.-.. .|+.|+++++.+++|..++|+++.++. ..+ ++.++. ..+..++..+++|+|++.|
T Consensus 20 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~G 97 (198)
T PF02782_consen 20 ISPPGFWNPFADHV--IPGRYLLEGASSSGGNALEWLRQQLGFRESLSDEEEIYEDLAELEAAASPPGSGGVFFLPFLSG 97 (198)
T ss_dssp TTSSSSEEEEEEET--SEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSSTTHHHHHHHHHHHHHTSSTCTTSEEEECTTG
T ss_pred cCCCeeEEeecCcC--CCCeEEEeeccccccchhHHHHHhhccchhhhhhhhccchHHHHHhhhccCcccceeeeecccc
Confidence 35677888777321 378999999999999999999999753 111 133332 2233347788999999999
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcE
Q psy9355 77 LYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156 (204)
Q Consensus 77 ~r~P~~~~~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv 156 (204)
+|+|+||++++|+|+|++.+|++.|++|||+||++|.++++++.|++..+.++++|+++||+++|++|+|++||++|+||
T Consensus 98 ~~~p~~~~~~~g~~~gl~~~~~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V 177 (198)
T PF02782_consen 98 ERSPYWDPDARGSFIGLSSDTTRADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVLGRPV 177 (198)
T ss_dssp BCTTTBBTTHCEEEEEEETTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHHTSEE
T ss_pred CcccccccccccccccCCcccCHHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHhCCce
Confidence 99999999999999999999999999999999999999999999998669999999999999999999999999999999
Q ss_pred EeccCC--Cccccc
Q psy9355 157 GKNLTG--GKDGGK 168 (204)
Q Consensus 157 ~~~~~~--~a~g~g 168 (204)
.+++.. ++.|+.
T Consensus 178 ~~~~~~e~~a~GaA 191 (198)
T PF02782_consen 178 VRPEVEEASALGAA 191 (198)
T ss_dssp EEESSSTHHHHHHH
T ss_pred EeCCCCchHHHHHH
Confidence 998763 344443
No 15
>KOG2517|consensus
Probab=99.97 E-value=5.7e-32 Score=237.06 Aligned_cols=195 Identities=42% Similarity=0.594 Sum_probs=164.2
Q ss_pred CcCCCCCCceeeeeeecCC-CcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCC
Q psy9355 3 FKVDSRQGLLTTVAFKLGD-EPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPY 81 (204)
Q Consensus 3 ~~~~~~~g~~~~~~~~~~~-~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~ 81 (204)
++..+.+|++++++|+++. .+-.|++||....+|..++|+++.+++.....++++++..+....+++|.|.|.|.|+|+
T Consensus 288 ~~~~s~~g~~~~~g~q~g~g~~~~~~leg~~a~~~~~v~w~~d~~~i~~~~~~i~~~~~~~~~t~d~~f~P~f~G~~sP~ 367 (516)
T KOG2517|consen 288 YFDASQPGLLTTVGGQSGTGKLLDHALEGHAAFAGALVQWLRDNLGIIEELNEIEKLAAEVNLTSDVHFVPDFHGLRSPY 367 (516)
T ss_pred ccccccCccceecccccccccHHHHHHhcccchHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccCceEEEccccCCCCCC
Confidence 3456678999999999973 244699999999999999999999877556667777777777788899999999999999
Q ss_pred CCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 82 WQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 82 ~~~~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
|||++||.|+|++.+++..||+||++|+|+|++|+++|.+++..+.++++++++||.++|++++|+.||++|+||+++..
T Consensus 368 ~d~~arg~i~Gls~~ts~~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~ 447 (516)
T KOG2517|consen 368 ADPTARGVIIGLSQDTSKEHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQD 447 (516)
T ss_pred CCcccceeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHhCCccccccc
Confidence 99999999999999999999999999999999999999999864479999999999999999999999999999999987
Q ss_pred CC----------cccccc--cCCHHHHHHHhhccCeEeecCcchhhhhhcc
Q psy9355 162 GG----------KDGGKY--ITDVSNASRTMLMNIETLEWDPMLCGVWEIN 200 (204)
Q Consensus 162 ~~----------a~g~g~--~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~ 200 (204)
.. +.+.|. |.+.+++. +....+.|.|+.+- +.++.+
T Consensus 448 ~e~~~~GaA~l~~~a~~~~~~~~~~~~~--~~~~~~~~~P~~~~-~~~~~k 495 (516)
T KOG2517|consen 448 VEAVALGAAMLAGAASGKWSYSSEEKAS--LTGVGKVFRPNIDD-KLLDKK 495 (516)
T ss_pred hhHHHHHHHHHHHhhcCCcchhhHHHHh--cCCCcceecCCCCc-HHHHHH
Confidence 31 133454 44555543 56788999999764 433333
No 16
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=99.97 E-value=1.4e-31 Score=233.46 Aligned_cols=191 Identities=25% Similarity=0.303 Sum_probs=161.4
Q ss_pred CceeeeeeecCC--CcceEEecchhhchhHHHHHHHHhcCCC--------CC----H-------HHHHHHHHhc-CCCCC
Q psy9355 10 GLLTTVAFKLGD--EPVVYALEGSVAVAGAAMNWLRDNVGMV--------TG----V-------EEIESLAESH-RHTGD 67 (204)
Q Consensus 10 g~~~~~~~~~~~--~p~~y~~~g~~~~~G~~~~W~~~~~~~~--------~~----~-------~~l~~~a~~~-~~~~g 67 (204)
-.+++||-.+.. .||.|++||+++++|..++||.+...-. .+ + ..|++.+.+. +..++
T Consensus 289 ~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 368 (544)
T COG1069 289 RFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAAIPPLASG 368 (544)
T ss_pred eecCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhccCcccCC
Confidence 456677766642 4999999999999999999999875210 11 1 2233333333 37889
Q ss_pred eEEecCCCCCCCCCCCCCCcEEEEcCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHH
Q psy9355 68 VYFVPAFSGLYAPYWQPDARGIICGITEDTTRG---HIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHL 144 (204)
Q Consensus 68 ~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~~---~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~ 144 (204)
++++|++.|.|+|+-||+++|+|+|++++|+.+ .+++|.+|+++|..|.++|.+++ .|.++++|+++||..||++|
T Consensus 369 l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~-~g~~Id~l~~sGG~~KN~ll 447 (544)
T COG1069 369 LHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFED-QGIAIDTLFASGGIRKNPLL 447 (544)
T ss_pred cEecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHH-cCCeeeEEEecCCcccCHHH
Confidence 999999999999999999999999999999999 89999999999999999999988 69999999999999999999
Q ss_pred HHHHHhhhCCcEEeccCC----------CcccccccCCHHHHHHHhhccCeEeecCc-chhhhhhccC
Q psy9355 145 MQTQADLCGIPVGKNLTG----------GKDGGKYITDVSNASRTMLMNIETLEWDP-MLCGVWEINM 201 (204)
Q Consensus 145 ~Qi~Adv~g~pv~~~~~~----------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~-~~~~~y~~~~ 201 (204)
||++||++|+||+++... +++++|.|.|+..|+++|.+..++..|++ +..+.|++.+
T Consensus 448 mql~aDvtg~~v~i~~s~~a~llGsAm~~avAag~~~dl~~A~~aMs~~~~~~~~~~~~~~~~y~~ly 515 (544)
T COG1069 448 MQLYADVTGRPVVIPASDQAVLLGAAMFAAVAAGVHPDLPAAAQAMSSAVEKTLPPPPERAARYERLY 515 (544)
T ss_pred HHHHHHhcCCeEEeecccchhhhHHHHHHHHHhccCcchHHHHHHhhcccceecCChHHHHHHHHHHH
Confidence 999999999999998763 24677899999999999999888888887 7777777654
No 17
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.2e-30 Score=230.78 Aligned_cols=188 Identities=26% Similarity=0.351 Sum_probs=152.8
Q ss_pred CceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhc--C-CCCCeEEecCCCCCCCCCCCCCC
Q psy9355 10 GLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESH--R-HTGDVYFVPAFSGLYAPYWQPDA 86 (204)
Q Consensus 10 g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~--~-~~~g~~~~P~l~G~r~P~~~~~~ 86 (204)
+.+.+.|+. .|+.|+..+..+++|.+++|+++.++...++.++...+... + +..++.|.||+.|+|.|.+++.+
T Consensus 283 ~~~~~~~~~---~~~~~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~p~l~~er~p~~~~~~ 359 (502)
T COG1070 283 GSIYTFCLG---LPGWFIVMGANNTGGWLLEWLRELFGLAESYPELLEEALAVPAPAGAIGLLFLPYLSGERGPHADPAA 359 (502)
T ss_pred cceeeeccc---CCCeEEEEEEecccHHHHHHHHHHhccccCcHHHHHHHHhccCCCCCCCcEEeccccCCcCCCCCccc
Confidence 344444443 36788889999999999999999988643444444333332 2 67889999999999999999999
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC--CCc
Q psy9355 87 RGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT--GGK 164 (204)
Q Consensus 87 ~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~--~~a 164 (204)
|+.|+|++..|+++|++||++||++|.+++.++.|++..+.++++|+++||++||++|+||+||++|+||.++.. .++
T Consensus 360 r~~~~g~~~~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~e~~a 439 (502)
T COG1070 360 RGGFVGLTLPHTRAHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGA 439 (502)
T ss_pred eeEEEccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEECCcccCHHHHHHHHHHcCCeeEecCcccchH
Confidence 999999999999999999999999999999999999976899999999999999999999999999999998874 221
Q ss_pred ---------ccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355 165 ---------DGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201 (204)
Q Consensus 165 ---------~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~ 201 (204)
.+.+++++.+++.+.+.. .+++.||++..+.|++.+
T Consensus 440 ~g~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~y~~~~ 484 (502)
T COG1070 440 LGGAALAAAALGGIYDSAEGALKAVVD-ARRIIPDPERAAAYQELY 484 (502)
T ss_pred HHHHHHHHHHhCCCCccHHHHhhcccc-ccccCCChHHHHHHHHHH
Confidence 123445555665555544 889999999988888764
No 18
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=99.97 E-value=7.2e-30 Score=226.69 Aligned_cols=160 Identities=23% Similarity=0.218 Sum_probs=133.9
Q ss_pred CcceEEecchhhchhHHHHHHHHhcCCC----CC-HHHHHHHHHhcC-CCCCeE-EecCCCCCCCCCCCCCCcEEEEcCC
Q psy9355 22 EPVVYALEGSVAVAGAAMNWLRDNVGMV----TG-VEEIESLAESHR-HTGDVY-FVPAFSGLYAPYWQPDARGIICGIT 94 (204)
Q Consensus 22 ~p~~y~~~g~~~~~G~~~~W~~~~~~~~----~~-~~~l~~~a~~~~-~~~g~~-~~P~l~G~r~P~~~~~~~g~~~Gl~ 94 (204)
.++.|..++...++| +++|+++.+... .+ |++|++.+++.+ ++++++ |+|++. |.++|+|+||+
T Consensus 289 ~~g~~~~~~~~~~g~-~~~W~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~~~~p~~~--------~~a~g~~~Gl~ 359 (465)
T TIGR02628 289 QAGLYNPAMQWLASG-VLEWVRKLFFTAETPSDHYYQMMIEEARLIANGADGVVNFQCDLL--------SCGQGGIQGLT 359 (465)
T ss_pred CCceeeehhhhhhhh-HHHHHHHHhcchhhccccHHHHHHHHHHhCCCCCCcceeecccCC--------cccceeEECCC
Confidence 367787665555555 899999876421 12 688899888776 788888 888753 57799999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC----------Cc
Q psy9355 95 EDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG----------GK 164 (204)
Q Consensus 95 ~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~----------~a 164 (204)
.+|++.||+||++|||||.+|+++|.+++..+.++++|+++||+++|++|+||+||++|+||++++.. ++
T Consensus 360 ~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~e~~~lGaA~~a~ 439 (465)
T TIGR02628 360 LNTTRGHIYRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDDAETTVAGAAMFGF 439 (465)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccCCHHHHHHhhhhcCCeeEeccCCcchHHHHHHHHH
Confidence 99999999999999999999999999987435678999999999999999999999999999988752 23
Q ss_pred ccccccCCHHHHHHHhhccCeEeecC
Q psy9355 165 DGGKYITDVSNASRTMLMNIETLEWD 190 (204)
Q Consensus 165 ~g~g~~~~~~~a~~~~~~~~~~~~P~ 190 (204)
++.|+|+|++++.+.+++..++|+|+
T Consensus 440 ~a~G~~~~~~~a~~~~~~~~~~~~P~ 465 (465)
T TIGR02628 440 YGVGEYNSPEEAQAQMHPQYRYFYPQ 465 (465)
T ss_pred HhcCccCCHHHHHHHhhccceeeCCC
Confidence 67889999999988998888899996
No 19
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=99.96 E-value=4.2e-29 Score=222.06 Aligned_cols=169 Identities=18% Similarity=0.207 Sum_probs=136.1
Q ss_pred CcceEEecchhhchhHHHHHHHHhcCC---CCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCC-CCcEEEEcCCCCC
Q psy9355 22 EPVVYALEGSVAVAGAAMNWLRDNVGM---VTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQP-DARGIICGITEDT 97 (204)
Q Consensus 22 ~p~~y~~~g~~~~~G~~~~W~~~~~~~---~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~-~~~g~~~Gl~~~~ 97 (204)
.++.|.++..+. | +|+++.+.. ..+|+++.+++++.+++++++ +| .|+|. ||| ++||+|+|++..|
T Consensus 269 ~~g~~~~~~~~~--g---~W~~~~~~~~~~~~~~~~l~~~a~~~~g~~gli-~p--~ger~--~~~~~arg~~~gl~~~~ 338 (471)
T PRK10640 269 AEGRYRVLKNIM--G---LWLLQRVLQERQITDLPALIAATAALPACRFLI-NP--NDDRF--INPPSMCSEIQAACRET 338 (471)
T ss_pred CCceEEEecchh--H---HHHHHHHHHHhccCCHHHHHHHHHhCCCCCcee-CC--Ccccc--cCchhhHHHHHHHHHHh
Confidence 357776666443 3 899987641 246888888888778778876 68 68884 675 8999996666655
Q ss_pred ------CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC-CC-------
Q psy9355 98 ------TRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT-GG------- 163 (204)
Q Consensus 98 ------~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~-~~------- 163 (204)
+++||+|||+|||||.+++++|.|++..+.++++|+++||+++|++|+||+||++|+||.+.+. ++
T Consensus 339 G~~~~~~~~~l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~ea~alGaa~~ 418 (471)
T PRK10640 339 AQPVPESDAELARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQLCADACGIRVIAGPVEASTLGNIGI 418 (471)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHHHHHHHhCCCeeeCChhHHHHHHHHH
Confidence 9999999999999999999999998755778899999999999999999999999999988776 21
Q ss_pred -cccccccCCHHHHHHHhhc---cCeEeecCcc--hhhhhhccC
Q psy9355 164 -KDGGKYITDVSNASRTMLM---NIETLEWDPM--LCGVWEINM 201 (204)
Q Consensus 164 -a~g~g~~~~~~~a~~~~~~---~~~~~~P~~~--~~~~y~~~~ 201 (204)
+++.|.++|++++ +++++ ..++|+||++ |.+.|.+.+
T Consensus 419 a~~a~G~~~~~~~~-~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ 461 (471)
T PRK10640 419 QLMTLDELNNVDDF-RQVVSTNFPLTTFTPNPDSEIARHVAQFQ 461 (471)
T ss_pred HHHHcCCcCCHHHH-HHHHHhcCCceEEcCCChHHHHHHHHHHH
Confidence 2578899999876 67777 5789999986 777776543
No 20
>PLN02669 xylulokinase
Probab=99.94 E-value=1.7e-26 Score=208.83 Aligned_cols=137 Identities=16% Similarity=0.104 Sum_probs=123.1
Q ss_pred cceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCC----CCCCCcEEEEcCCCC-
Q psy9355 23 PVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPY----WQPDARGIICGITED- 96 (204)
Q Consensus 23 p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~----~~~~~~g~~~Gl~~~- 96 (204)
|+.|+.+++..++|.+++|+++.+. ..+|+.+++++++.+ +++|++++||+.|++.|+ +++.++|.|.|++.+
T Consensus 329 ~~~y~~~~~~~ngg~~~~w~r~~~~-~~~~~~~~~~~~~~~~g~~g~l~~~~~~~e~~P~~~~~~~~~~~g~~~g~~~~~ 407 (556)
T PLN02669 329 PESYMVMLCYKNGSLTREDIRNRCA-DGSWDVFNKLLEQTPPLNGGKLGFYYKEHEILPPLPVGFHRYILENFSGEALDG 407 (556)
T ss_pred CCCeEEEEEecchHHHHHHHHHHhc-cCcHHHHHHHHHhCCCCCCCEEEeeccCcccCCCCCCccchhhhccccCccccc
Confidence 6889999999999999999999885 246888999887776 778899899999999996 567788999999887
Q ss_pred --------CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC
Q psy9355 97 --------TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG 162 (204)
Q Consensus 97 --------~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~ 162 (204)
|+++|++|||+||++|++|.+++.|+ .+.++++|+++||+++|++|+||+|||+|+||++++..
T Consensus 408 ~~~~~~~~~~~~~~~RAvlEg~a~~~r~~~~~l~--~~~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~ 479 (556)
T PLN02669 408 LVEEEVGEFDPPSEVRAIIEGQFLSMRAHAERFG--MPVPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP 479 (556)
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC
Confidence 69999999999999999999999995 35678999999999999999999999999999998763
No 21
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=99.91 E-value=3.7e-24 Score=189.66 Aligned_cols=147 Identities=17% Similarity=0.208 Sum_probs=112.9
Q ss_pred cceEEecchhhchhHHHHHHHHhcCC---CCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCC-CcEE------EEc
Q psy9355 23 PVVYALEGSVAVAGAAMNWLRDNVGM---VTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPD-ARGI------ICG 92 (204)
Q Consensus 23 p~~y~~~g~~~~~G~~~~W~~~~~~~---~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~-~~g~------~~G 92 (204)
++.|.+.+... ++ |+++.+.. ...|+++++.+...| .+.|++.+++.|+|+|. +++. |+|
T Consensus 282 ~~~~~~~~~~~-g~----W~~~~~~~~~~~~~~~~l~~~a~~~p-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G 351 (454)
T TIGR02627 282 DGRYRVLKNIM-GL----WLLQRVCRERDINDLPALIEQAQALP-----AFKSIINPNDDRFINPENMCEEIQAYCRETN 351 (454)
T ss_pred ccEEEeecchh-hh----HHHHHHHhhhccccHHHHHHHhcCCC-----CCCeeeCCCcccccChhhhHHHHHHHHHHcC
Confidence 56676665443 33 65554421 235667776665443 23366678899999995 4444 499
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC-C--------
Q psy9355 93 ITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG-G-------- 163 (204)
Q Consensus 93 l~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~-~-------- 163 (204)
|+.+|+++||+|||+|||||.+|+++|.|++..+.++++|+++||+++|++|+||+||++|+||.+.... +
T Consensus 352 l~~~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~e~~a~GaA~~a 431 (454)
T TIGR02627 352 QPIPESDAELARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGSQNAFLNQLCADACGIRVIAGPVEASTLGNIGVQ 431 (454)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCEEEEECChhhhHHHHHHHHHHhCCceEcCCchHHHHHHHHHH
Confidence 9999999999999999999999999999987447788999999999999999999999999999876642 2
Q ss_pred cccccccCCHHHHHHH
Q psy9355 164 KDGGKYITDVSNASRT 179 (204)
Q Consensus 164 a~g~g~~~~~~~a~~~ 179 (204)
+++.|.|++++++.+.
T Consensus 432 ~~~~G~~~~~~~~~~~ 447 (454)
T TIGR02627 432 LMALDEINDMAAFRQI 447 (454)
T ss_pred HHhcCCcCCHHHHHHH
Confidence 2577899999887443
No 22
>KOG2531|consensus
Probab=99.13 E-value=5.6e-10 Score=96.59 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=104.8
Q ss_pred eeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCCCcEEE-
Q psy9355 13 TTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDARGII- 90 (204)
Q Consensus 13 ~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~~~g~~- 90 (204)
+.+|+-+. |..|+..-+..+|+.+-+=.++... ..+|+.+++...+.+ |.+|.+-+-|-.+|-.|. ...|..
T Consensus 320 Hvf~hP~~--~~~YM~mlCfkNgSL~RE~ir~~~~-~~sWd~Fne~L~~t~~gn~g~~g~~f~~~EIvP~---~~~G~~R 393 (545)
T KOG2531|consen 320 HVFCHPTD--PNHYMGMLCFKNGSLTRERIRNESA-NGSWDKFNEILDSTPSGNNGNLGVYFPEREIVPS---VPKGTLR 393 (545)
T ss_pred ceeccCCC--ccceEEEEEecCChHHHHHHhhccc-CCCHHHHHHHhccCcCCCCCceeEecccccccCC---CCccceE
Confidence 34555443 6789888888889888888887643 368999999888776 666654333334676662 112221
Q ss_pred ------------EcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEe
Q psy9355 91 ------------CGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158 (204)
Q Consensus 91 ------------~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~ 158 (204)
.++....++.+-+||++||-....|.+.+.|.-. ..+.++|+++||.|+|....|++|||+|.||.+
T Consensus 394 ~~~~~~~~~~~~~~v~kf~~p~~e~rAlvEgQ~L~~r~~~~~lg~~-~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~ 472 (545)
T KOG2531|consen 394 FIFENKELSAERIEVAKFSDPEIEARALVEGQFLSKRARAEPLGFK-SNPPTRILVTGGASRNEAILQIIADVFGAPVYT 472 (545)
T ss_pred EEecCCccchhhcccccCCCchHHHHHHHHHhHhHhhhhhccccCC-CCCCceEEEecCccccHHHHHHHHHHhCCCeEe
Confidence 1333445688899999999999999999887531 236789999999999999999999999999998
Q ss_pred ccC
Q psy9355 159 NLT 161 (204)
Q Consensus 159 ~~~ 161 (204)
-+.
T Consensus 473 ~~~ 475 (545)
T KOG2531|consen 473 IEG 475 (545)
T ss_pred ecC
Confidence 754
No 23
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.55 E-value=2.1e-07 Score=76.49 Aligned_cols=114 Identities=20% Similarity=0.281 Sum_probs=78.8
Q ss_pred hhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q psy9355 32 VAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAIC 111 (204)
Q Consensus 32 ~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~~~l~rAvlEgia 111 (204)
...+|.-++-+.+.++. +++++++++.+.. . |.-.+.+...+- ....+..+....++++++++++++++
T Consensus 123 a~Gtg~f~e~~a~~l~~--~~~e~~~~~~~~~--~-----~~~~~~~c~vf~--~s~vi~~l~~g~~~~di~~~~~~~va 191 (248)
T TIGR00241 123 AAGTGRFLEVTARRLGV--SVEELGSLAEKAD--R-----KAKISSMCTVFA--ESELISLLAAGVKKEDILAGVYESIA 191 (248)
T ss_pred cccccHHHHHHHHHcCC--CHHHHHHHHhcCC--C-----CCCcCCEeEEEe--chhHHHHHHCCCCHHHHHHHHHHHHH
Confidence 33456677777777775 6788887765421 1 211111111111 01222345556789999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcc-eEEEecCccccHHHHHHHHhhhCCcEEeccCC
Q psy9355 112 FQTRDILEAMKKDCGIQLI-KLQVDGGMTANKHLMQTQADLCGIPVGKNLTG 162 (204)
Q Consensus 112 ~~~~~~~e~l~~~~g~~~~-~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~ 162 (204)
+.+...+..+ +++ +|+++||+++|+.|.+.+++.+++||.+++..
T Consensus 192 ~~i~~~~~~~------~~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~ 237 (248)
T TIGR00241 192 ERVAEMLQRL------KIEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEP 237 (248)
T ss_pred HHHHHHHhhc------CCCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCc
Confidence 9999865432 244 79999999999999999999999999998875
No 24
>PRK13317 pantothenate kinase; Provisional
Probab=98.21 E-value=6.9e-05 Score=62.63 Aligned_cols=142 Identities=14% Similarity=0.098 Sum_probs=96.3
Q ss_pred eEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCCCcEEEEc-----CCCCCC
Q psy9355 25 VYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDARGIICG-----ITEDTT 98 (204)
Q Consensus 25 ~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~~~g~~~G-----l~~~~~ 98 (204)
.+.-.+++..||..+.=+.+.+-...+++++.+++.+-. ..-++ .+-.+.+...+....+.+.+.+| ++...+
T Consensus 116 ~~~r~~Gt~iGGgt~~gL~~lL~~~~~~~el~~la~~g~~~~~Dl-~v~dIy~~~~~~l~i~s~csvFakv~~l~~~g~~ 194 (277)
T PRK13317 116 SQRRVGGTGIGGGTIQGLSKLLTNISDYEQLIELAKHGDRNNIDL-KVGDIYKGPLPPIPGDLTASNFGKVLHHLDSEFT 194 (277)
T ss_pred ceEEEccccccHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccccc-eeccccCCCCCCCCCceeEehhhhhhhhhccCCC
Confidence 455556676777766666666533468999999998643 22222 23444443233335566666655 344578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEec-CccccHHHHHHHHhhh---CCcEEeccCC---Ccccccc
Q psy9355 99 RGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDG-GMTANKHLMQTQADLC---GIPVGKNLTG---GKDGGKY 169 (204)
Q Consensus 99 ~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~G-Gga~s~~~~Qi~Adv~---g~pv~~~~~~---~a~g~g~ 169 (204)
++|++++++..++..+....-.+.+. ...++|+.+| |.++|+.+++.+++.+ +.++.+|++. +|+|+.+
T Consensus 195 ~eDIaasl~~~v~~~I~~lA~~~ar~--~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL 270 (277)
T PRK13317 195 SSDILAGVIGLVGEVITTLSIQAARE--KNIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALL 270 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHH
Confidence 99999999999988887764444332 3457899999 6889999999999999 7889998874 4566544
No 25
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=97.52 E-value=0.0077 Score=50.38 Aligned_cols=135 Identities=13% Similarity=0.078 Sum_probs=91.4
Q ss_pred eEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCC--CCCCCCCCCcEEEEc-C-----CC
Q psy9355 25 VYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGL--YAPYWQPDARGIICG-I-----TE 95 (204)
Q Consensus 25 ~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~--r~P~~~~~~~g~~~G-l-----~~ 95 (204)
.|--.+++..||+++-=+...+....+++++.++|++-. ..-.+ .+-++.|. ..+.-..+..++-+| + +.
T Consensus 121 ~~~Rv~Gt~iGGGTf~GL~~LL~~~~~~~el~~lA~~G~~~~vDl-~V~dIYg~~y~~~~L~~d~iASsfGkv~~~~~~~ 199 (279)
T TIGR00555 121 NYERVGGTSLGGGTFLGLGKLLTGIQTFDELLEMAQHGDRTNVDL-LVGDIYGGDYSESGLDGSLTASSFGKVLSKHLDQ 199 (279)
T ss_pred cEEEEcCccccHHHHHHHHHHHcCCCCHHHHHHHHHcCCCccccc-ccccccCCCCCCCCCCcceeeeccchhhcccccc
Confidence 566666777777776666666654578999999998643 11122 24445542 122235566777777 3 34
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecC-ccccHHHHHHHHhhhC---CcEEeccCC
Q psy9355 96 DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGG-MTANKHLMQTQADLCG---IPVGKNLTG 162 (204)
Q Consensus 96 ~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GG-ga~s~~~~Qi~Adv~g---~pv~~~~~~ 162 (204)
..+++|++++++..|+..+-..--.... ....++|+..|| ...++.+++.++..++ ..+..|+++
T Consensus 200 ~~~~eDiAaSLl~mV~~nIg~lA~~~a~--~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~ 268 (279)
T TIGR00555 200 SFSPEDIAASLLGLIGNNIGQIAYLCAL--RYNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHE 268 (279)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCc
Confidence 4679999999999999977665433322 245789999999 5678999999998876 556677764
No 26
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.21 E-value=0.0014 Score=56.32 Aligned_cols=126 Identities=17% Similarity=0.249 Sum_probs=85.6
Q ss_pred cceEE-ecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEE------cCCC
Q psy9355 23 PVVYA-LEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIIC------GITE 95 (204)
Q Consensus 23 p~~y~-~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~------Gl~~ 95 (204)
+..|. .+-+...+|+-++=+.+.++. +.+++.+.+.... . + +-++ .+ ...|. =+..
T Consensus 251 v~df~mN~~CAAGtGrFLE~~A~~Lgv--~v~E~~~~A~~~~--~-~---v~i~-S~--------CaVF~eSevi~~~~~ 313 (396)
T COG1924 251 VDDFTMNDKCAAGTGRFLEVIARRLGV--DVEELGKLALKAT--P-P---VKIN-SR--------CAVFAESEVISALAE 313 (396)
T ss_pred eeeeEeccccccccchHHHHHHHHhCC--CHHHHHHHHhcCC--C-C---cccC-Ce--------eEEEehHHHHHHHHc
Confidence 33344 445677788889988888885 6888888877532 1 0 1111 11 12221 1234
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcce-EEEecCccccHHHHHHHHhhhCCcEEeccCC---Cccccccc
Q psy9355 96 DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIK-LQVDGGMTANKHLMQTQADLCGIPVGKNLTG---GKDGGKYI 170 (204)
Q Consensus 96 ~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~-I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---~a~g~g~~ 170 (204)
..+++++..++.++++-+.... .+++ ++++. |++.||.+.|..+...+.|.+|++|.+|+.. +|+|+.++
T Consensus 314 G~~~EdI~AGl~~Sv~~~v~~~--~~~~---~~i~~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~ 387 (396)
T COG1924 314 GASPEDILAGLAYSVAENVAEK--VIKR---VDIEEPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALI 387 (396)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH--Hhhc---cCCCCCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHH
Confidence 5789999999999988655431 2322 23333 9999999999999999999999999999985 56666554
No 27
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.94 E-value=0.003 Score=55.08 Aligned_cols=121 Identities=17% Similarity=0.243 Sum_probs=80.7
Q ss_pred ecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEE------cCCCCCCHHH
Q psy9355 28 LEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIIC------GITEDTTRGH 101 (204)
Q Consensus 28 ~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~------Gl~~~~~~~~ 101 (204)
..-+...+|.-++-..+.++. +.+++.+++.+.. + |.--+.+ ..+|. =+....+++|
T Consensus 296 NDKCAAGTGrFLE~mA~~Lgi--~leEl~~lA~~a~--~-----pv~ISS~--------CtVFAESEVIslla~G~~reD 358 (432)
T TIGR02259 296 NDRCAAGCGRYLGYIADEMNM--GLHELGPLAMKSS--K-----PARINST--------CTVFAGAELRDRLALGDKRED 358 (432)
T ss_pred cCcccccchHHHHHHHHHcCC--CHHHHHHHHhcCC--C-----CCCcCCc--------ceEEehHHHHHHHHCCCCHHH
Confidence 344555677888888888875 5777777665431 1 1111122 22331 1234578999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh-----CCcEEeccCC---Ccccccc
Q psy9355 102 IVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC-----GIPVGKNLTG---GKDGGKY 169 (204)
Q Consensus 102 l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~-----g~pv~~~~~~---~a~g~g~ 169 (204)
+++++..+|+-.+...+..+. ..-+.|.++||.++|+.+.+.+.+.+ +.+|.+|+.. +|+|+.+
T Consensus 359 IaAGL~~SIA~Rv~s~l~r~~----~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL 430 (432)
T TIGR02259 359 ILAGLHRAIILRAISIISRSG----GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASE 430 (432)
T ss_pred HHHHHHHHHHHHHHHHHhccc----CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHH
Confidence 999999999886665543331 12357999999999999999999999 5788888774 4555543
No 28
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.91 E-value=0.0064 Score=53.18 Aligned_cols=125 Identities=17% Similarity=0.256 Sum_probs=80.3
Q ss_pred hhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHH
Q psy9355 31 SVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAI 110 (204)
Q Consensus 31 ~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~~~l~rAvlEgi 110 (204)
+...+|+-++-+.+.++. +.+++.+++.+.. .+ |.-.+.+.-.+.. ...+.=++...+++|+++++..+|
T Consensus 272 CAAGTGrFLE~~A~~Lgi--~ieEl~~lA~~~~-~~-----pv~IsS~CtVFae--SevIsll~~G~~~eDIaAGl~~SI 341 (404)
T TIGR03286 272 CAGASGRFLEMTAKRLGV--DITELGKLALKGM-PE-----KVRMNSYCIVFGI--QDLVTALAEGASPEDVAAAACHSV 341 (404)
T ss_pred ccccCcHHHHHHHHHhCC--CHHHHHHHHHhCC-CC-----CCCccCccccccc--HhHHHHHHCCCCHHHHHHHHHHHH
Confidence 344578888888888865 6888888775431 01 1111111111110 111111223478999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCc-ceEEEecCccccHHHHHHHHhhhCCcEEeccCC---Cccccccc
Q psy9355 111 CFQTRDILEAMKKDCGIQL-IKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG---GKDGGKYI 170 (204)
Q Consensus 111 a~~~~~~~e~l~~~~g~~~-~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---~a~g~g~~ 170 (204)
+-++... .+++ .++ +.|+++||.++|+.+...+.+.+|.+|.+|+.. +|+|+.++
T Consensus 342 a~rv~~~--l~~~---~~i~~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~ 400 (404)
T TIGR03286 342 AEQVYEQ--QLQE---IDVREPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALL 400 (404)
T ss_pred HHHHHHH--Hhhc---CCCCCcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHH
Confidence 9876641 1222 233 459999999999999999999999999999884 45555443
No 29
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=96.88 E-value=0.0078 Score=50.60 Aligned_cols=128 Identities=13% Similarity=0.210 Sum_probs=78.8
Q ss_pred ecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHH
Q psy9355 28 LEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAAL 107 (204)
Q Consensus 28 ~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~~~l~rAvl 107 (204)
..-+...+|+-++=..+.++. +.+++.+++.... .+ |.--+.++-.+... -.+.=+....+++|+++++.
T Consensus 154 NdkCAAGTGrFLE~~A~~Lgi--~leel~~~a~~~~-~~-----p~~Iss~CtVFAeS--evi~l~~~G~~~edI~aGl~ 223 (293)
T TIGR03192 154 NDKCAAGTGRGMEVISDLMQI--PIADLGPRSFDVE-TE-----PEAVSSICVVFAKS--EALGLLKAGYTKNMVIAAYC 223 (293)
T ss_pred cCcccccccHHHHHHHHHcCC--CHHHHHHHHHhcC-CC-----CCCcCCcceEeccH--hHHHHHHCCCCHHHHHHHHH
Confidence 334455667778887777775 5677777653211 01 21111222111110 00111234578999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEE-eccC---CCccccccc
Q psy9355 108 EAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVG-KNLT---GGKDGGKYI 170 (204)
Q Consensus 108 Egia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~-~~~~---~~a~g~g~~ 170 (204)
++|+-++.. .+++ .+. -+.|+++||.++|+.+.+.+.+.++++|. .|+. .+|+|+.++
T Consensus 224 ~sia~rv~~---~~~~-~~i-~~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~ 285 (293)
T TIGR03192 224 QAMAERVVS---LLER-IGV-EEGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALF 285 (293)
T ss_pred HHHHHHHHH---Hhcc-cCC-CCCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHH
Confidence 999976543 3333 232 24589999999999999999999999998 4443 356676654
No 30
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.024 Score=48.45 Aligned_cols=129 Identities=22% Similarity=0.244 Sum_probs=87.5
Q ss_pred ceEEecchhh--chhHHHHHHHHhcCCC-CCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCC-----
Q psy9355 24 VVYALEGSVA--VAGAAMNWLRDNVGMV-TGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITE----- 95 (204)
Q Consensus 24 ~~y~~~g~~~--~~G~~~~W~~~~~~~~-~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~----- 95 (204)
|.|-+.|.+. ..|.+++-+.+.+|+. ..-..++++|++-. ..-+.+|+-. .+.+...=+|.||..
T Consensus 147 g~y~ilGeTlDdA~Gea~DKvAR~lGL~yPGGp~Ie~lA~~G~--~~~~~fP~~~-----~~~~~~DfSFSGLkTa~~~~ 219 (342)
T COG0533 147 GRYEVLGETLDDAAGEAFDKVARLLGLGYPGGPAIEKLAKKGD--PDAFEFPRPM-----VKGKNLDFSFSGLKTAVLRL 219 (342)
T ss_pred CcEEEEeeechhhhhHHHHHHHHHhCCCCCCcHHHHHHHhcCC--CCceeCCccc-----cCCCCcceehHhHHHHHHHH
Confidence 6676666543 5789999999999873 22248899988642 2236677621 112223345555542
Q ss_pred -----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEeccC
Q psy9355 96 -----------DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNLT 161 (204)
Q Consensus 96 -----------~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~~ 161 (204)
..++++++++.-|.+.-.+.+..+..-+. ...+++++.||.+.|..+++++.++. |..+..|+.
T Consensus 220 ~~~~~~~~~~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~--~~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~ 297 (342)
T COG0533 220 LKKLKQKEELNEEDKEDIAASFQEAVFDMLVEKTERALKH--TGKKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPL 297 (342)
T ss_pred HHhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCCh
Confidence 12467799999888887777776665443 35788999999999999999999876 445777765
No 31
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=96.70 E-value=0.0063 Score=52.76 Aligned_cols=60 Identities=18% Similarity=0.097 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355 97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL 160 (204)
Q Consensus 97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~ 160 (204)
.+++|+++-+.|=.|.++.+.+..+. .+.++|+++|||++|+.+++.+.+.+..+|...+
T Consensus 259 ~s~~D~~aTlt~~TA~sI~~~~~~~~----~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~ 318 (365)
T PRK09585 259 LSPEDVQATLTELTAASIARAVRRLP----PGPDELLVCGGGARNPTLMERLAALLPTEVATTD 318 (365)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcc----CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHH
Confidence 47899999999977877777775442 2346899999999999999999999865555433
No 32
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=96.63 E-value=0.011 Score=51.21 Aligned_cols=60 Identities=20% Similarity=0.137 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCC-cEEeccC
Q psy9355 98 TRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGI-PVGKNLT 161 (204)
Q Consensus 98 ~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~-pv~~~~~ 161 (204)
+++|+.+-+.|=.|.++.+.++.+. .++++|+++|||++|+.+++.+...+.. +|...+.
T Consensus 258 ~~~D~~aTlt~~TA~sI~~~i~~~~----~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~ 318 (364)
T PF03702_consen 258 SPEDILATLTEFTAQSIADAIRRFP----PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDE 318 (364)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH-----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGG
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcC----CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHH
Confidence 6999999999988887777776653 3478999999999999999999998875 7766554
No 33
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=96.54 E-value=0.0073 Score=49.37 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 101 HIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 101 ~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
++++.+++.+.-.+++.++ + .+++.|+++||+|+.+.+.+.+.+.+|.||.++.+
T Consensus 173 ~~i~~~~~~i~~~i~~~l~---~---~~~~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~ 227 (239)
T TIGR02529 173 PVVKPVYQKMASIVKRHIE---G---QGVKDLYLVGGACSFSGFADVFEKQLGLNVIKPQH 227 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH---h---CCCCEEEEECchhcchhHHHHHHHHhCCCcccCCC
Confidence 4556666666665555443 2 35679999999999999999999999999987665
No 34
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.43 E-value=0.015 Score=48.11 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=69.8
Q ss_pred ecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHH
Q psy9355 28 LEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAAL 107 (204)
Q Consensus 28 ~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~~~l~rAvl 107 (204)
..-+...+|.-++-..+.++. +.+++.+++.... + |.--+.+...+.... .+.=+....+++|++.++.
T Consensus 126 NdkCAAGTG~FLe~~A~~L~i--~leel~~~a~~~~--~-----~~~iss~CtVFaeSe--vi~~~~~G~~~edI~aGl~ 194 (262)
T TIGR02261 126 TSQCASGSGQFLENIARYLGI--AQDEIGSLSQQAD--N-----PEKVSGICAVLAETD--VINMVSRGISAPNILKGIH 194 (262)
T ss_pred cCcccccccHHHHHHHHHhCC--CHHHHHHHHhcCC--C-----CCCcCCCceEEchhh--HHHHHHCCCCHHHHHHHHH
Confidence 334455678888888888875 5777777665331 1 111112221111100 0011234578999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhC
Q psy9355 108 EAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCG 153 (204)
Q Consensus 108 Egia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g 153 (204)
.+|+-.+...+. + .+...++|+++||.++|+.+.+.+.+.++
T Consensus 195 ~sia~r~~~~~~---~-~~~~~~~v~~~GGva~n~~~~~~le~~l~ 236 (262)
T TIGR02261 195 ESMADRLAKLLK---S-LGALDGTVLCTGGLALDAGLLEALKDAIQ 236 (262)
T ss_pred HHHHHHHHHHHh---c-cCCCCCcEEEECcccccHHHHHHHHHHhc
Confidence 999986654433 3 23334569999999999999999999884
No 35
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=96.29 E-value=0.014 Score=50.11 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 99 RGHIVRAALEAICFQTRDILEAMKKD-CGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 99 ~~~l~rAvlEgia~~~~~~~e~l~~~-~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
..+.++.+++-++-++++.++.+... .+.++++|+++|||++.+-+.+.+++.||.||.+...
T Consensus 244 ~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p 307 (340)
T PF11104_consen 244 DQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINP 307 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcCh
Confidence 45788999999999999999976553 3567999999999999999999999999999998664
No 36
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=96.18 E-value=0.011 Score=49.05 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 100 GHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 100 ~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
.++++..+|-+.-.+++.++ ..+++.|+++||+|+.+-+.+++++.+|.||.++..
T Consensus 199 ~~ii~~~~~~i~~~i~~~l~------~~~~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~ 254 (267)
T PRK15080 199 FPVVKPVVEKMASIVARHIE------GQDVEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQH 254 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHh------cCCCCEEEEECCcccchhHHHHHHHHhCCCcccCCC
Confidence 34555655555555554433 136789999999999999999999999999988665
No 37
>PLN02920 pantothenate kinase 1
Probab=95.93 E-value=0.46 Score=41.58 Aligned_cols=137 Identities=14% Similarity=0.051 Sum_probs=92.9
Q ss_pred cceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCCC---CCCCCCCCcEEEEc--CCC-
Q psy9355 23 PVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLY---APYWQPDARGIICG--ITE- 95 (204)
Q Consensus 23 p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r---~P~~~~~~~g~~~G--l~~- 95 (204)
|+.|--.|++.-||+++-=|...+-...+|+++-++|+.-. ..-. +.+-+..|.. .+.-..++.++-+| ...
T Consensus 184 ~~~~~RVgGTsIGGGT~~GL~~LLtg~~sfdEll~lA~~Gd~~nvD-llVgDIYGg~~y~~~gL~~d~iASsFGKv~~~~ 262 (398)
T PLN02920 184 DGKFERVSGTSVGGGTFWGLGKLLTKCKSFDELLELSHQGNNRVID-MLVGDIYGGMDYSKIGLSSTTIASSFGKAISDN 262 (398)
T ss_pred CCcEEEEcccccchHhHHHHHHHHcCCCCHHHHHHHHhCCCccccC-ceeccccCCCCCCCCCCCccceeeccCcccccc
Confidence 56777778888888877767666655678999999988643 1222 3456666521 23345667777777 321
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccH-HHHHHHHhhh------CCcEEeccCC
Q psy9355 96 ----DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANK-HLMQTQADLC------GIPVGKNLTG 162 (204)
Q Consensus 96 ----~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~-~~~Qi~Adv~------g~pv~~~~~~ 162 (204)
+.+++|++|+++--|+..+-++--...+ -..+++|+.+|.-.+++ ..++.++-.. ++....++..
T Consensus 263 ~~~~~~s~eDia~SLL~mVs~nIgqiA~L~A~--~~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHe 338 (398)
T PLN02920 263 KELEDYKPEDVARSLLRMISNNIGQISYLNAL--RFGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHE 338 (398)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCc
Confidence 3469999999999999999877544433 35689999999999876 7777665544 3444455553
No 38
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.075 Score=45.82 Aligned_cols=58 Identities=21% Similarity=0.175 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh-CCcEEe
Q psy9355 97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC-GIPVGK 158 (204)
Q Consensus 97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~-g~pv~~ 158 (204)
-+++|+.+...|-.+-.+- +.+. ......++++++|||.+|+++|+.+|..+ |.+|..
T Consensus 263 l~a~Dv~aTL~eltA~tIv---~s~~-~~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~ 321 (371)
T COG2377 263 LNAEDVQATLVELTAATIV---KSVA-TLQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVAT 321 (371)
T ss_pred CCHHHHHHHHHHHHHHHHH---HHHh-hccCCCceeEeecCCccCHHHHHHHHHhcCCCeeee
Confidence 3788999998886655444 4443 23456899999999999999999999999 444443
No 39
>PRK09604 UGMP family protein; Validated
Probab=95.36 E-value=0.37 Score=41.33 Aligned_cols=120 Identities=23% Similarity=0.225 Sum_probs=79.5
Q ss_pred hhchhHHHHHHHHhcCCC-CCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCC---------CCCCHHH
Q psy9355 32 VAVAGAAMNWLRDNVGMV-TGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGIT---------EDTTRGH 101 (204)
Q Consensus 32 ~~~~G~~~~W~~~~~~~~-~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~---------~~~~~~~ 101 (204)
-.+-|..++.+...+|.. ..-..++.+|.. +....+-+|... +. ....=+|.|+. ...++.+
T Consensus 158 d~slG~~yd~~t~~LG~~~~~g~kvmgLA~~--g~~~~~~~~~~~-~~-----~~~~~sfsg~~~~~~~~~~~~~~~~~~ 229 (332)
T PRK09604 158 DDAAGEAFDKVAKLLGLGYPGGPAIDKLAKQ--GDPDAFKFPRPM-DR-----PGLDFSFSGLKTAVLNTIEKSEQTKAD 229 (332)
T ss_pred CchhhHHHHHHHHHcCCCCCCcHHHHHHHHh--CCCCeEeCCccc-cC-----CCccEecCcHHHHHHHHHHhcCCCHHH
Confidence 346789999999988863 111246676643 221112223221 11 11112234442 2235789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEeccC
Q psy9355 102 IVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNLT 161 (204)
Q Consensus 102 l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~~ 161 (204)
+++++.+.++-.+.+.++...+.+ ..++|.++||.+.|..+++.+.+.+ |.++.+++.
T Consensus 230 iA~s~q~~l~~~l~~~~~~~~~~~--~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~ 290 (332)
T PRK09604 230 IAASFQAAVVDVLVIKTKRALKQT--GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPL 290 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 999999999888888877776543 4678999999999999999999998 888888776
No 40
>PRK14878 UGMP family protein; Provisional
Probab=95.19 E-value=0.084 Score=45.10 Aligned_cols=120 Identities=17% Similarity=0.156 Sum_probs=78.1
Q ss_pred hhchhHHHHHHHHhcCCCC-CHHHHHHHHHhcCCCCCeEEecCC-CCCCCCCCCCCCcEEE----EcCCCCCCHHHHHHH
Q psy9355 32 VAVAGAAMNWLRDNVGMVT-GVEEIESLAESHRHTGDVYFVPAF-SGLYAPYWQPDARGII----CGITEDTTRGHIVRA 105 (204)
Q Consensus 32 ~~~~G~~~~W~~~~~~~~~-~~~~l~~~a~~~~~~~g~~~~P~l-~G~r~P~~~~~~~g~~----~Gl~~~~~~~~l~rA 105 (204)
-.+.|..++-+...+++.. .-..+|+++.... . .+-+|+- .+. +-+.+|.+ .-+....++.+++++
T Consensus 149 d~s~Gr~fD~vA~~LGl~~~G~~~lE~~a~~~~--~-~~~~p~~~~~~-----~~~fsgl~~~v~~~i~~~~~~~diAa~ 220 (323)
T PRK14878 149 DIAIGNALDTFAREVGLAPPGGPAIEKCAEKGE--K-YIELPYVVKGQ-----DLSFSGLLTAALRLYKGKERLEDVCYS 220 (323)
T ss_pred CcchhHHHHHHHHHcCCCCCChhHHHHHHhhCC--C-cCcCCccCcCC-----CCcchHHHHHHHHHHHcCCCHHHHHHH
Confidence 3567999999998888631 1234777665421 1 1112321 111 11111111 011122456899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEeccC
Q psy9355 106 ALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNLT 161 (204)
Q Consensus 106 vlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~~ 161 (204)
+.+.++-.+-+..+...+.+ ..++|.++||.+.|..+++.+.+.+ |.+|.+++.
T Consensus 221 fq~~l~~~l~~~~~~~~~~~--g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~ 277 (323)
T PRK14878 221 LRETAFAMLVEVTERALAHT--GKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPP 277 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHh--CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 99999888888877776544 4678999999999999999999988 888988775
No 41
>PRK11678 putative chaperone; Provisional
Probab=94.94 E-value=0.11 Score=46.45 Aligned_cols=74 Identities=9% Similarity=0.090 Sum_probs=49.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhC-CcEEeccCCCccccc
Q psy9355 94 TEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCG-IPVGKNLTGGKDGGK 168 (204)
Q Consensus 94 ~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g-~pv~~~~~~~a~g~g 168 (204)
...-++.++- .+++.+.-++...++..-+..+..++.|+++||.++.|...+++.+.++ .|+.....-.+++.|
T Consensus 366 ~~~ItR~efe-~ii~~~l~ri~~~i~~~L~~a~~~~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~G 440 (450)
T PRK11678 366 ATEISQQGLE-EAISQPLARILELVQLALDQAQVKPDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAG 440 (450)
T ss_pred ceeeCHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHH
Confidence 3344566543 3344444444444444333356778899999999999999999999996 577776555555444
No 42
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=94.93 E-value=0.081 Score=45.26 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355 100 GHIVRAALEAICFQTRDILEAMKKDC-GIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL 160 (204)
Q Consensus 100 ~~l~rAvlEgia~~~~~~~e~l~~~~-g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~ 160 (204)
.++++.+++-++-++++.++.+.... +.++++|+++||+++.+-+...+++.||.||.+..
T Consensus 253 ~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~ 314 (348)
T TIGR01175 253 PEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVAN 314 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecC
Confidence 35678888889888888887764322 34688999999999999999999999999998864
No 43
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=94.83 E-value=0.096 Score=46.33 Aligned_cols=62 Identities=8% Similarity=0.102 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---cC---CCcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355 99 RGHIVRAALEAICFQTRDILEAMKKD---CG---IQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL 160 (204)
Q Consensus 99 ~~~l~rAvlEgia~~~~~~~e~l~~~---~g---~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~ 160 (204)
-.+++++-+|.|.-.+++.++.+... .+ .....|+++||+|+-+.+.++++++|++||.+..
T Consensus 293 l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~ 360 (420)
T PRK09472 293 LAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGA 360 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeC
Confidence 44677777777877777777555332 23 2357799999999999999999999999998754
No 44
>CHL00094 dnaK heat shock protein 70
Probab=94.64 E-value=0.049 Score=50.61 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=29.1
Q ss_pred CcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355 128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL 160 (204)
Q Consensus 128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~ 160 (204)
.++.|+++||++|.|.+.+++++++|.++....
T Consensus 328 ~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~ 360 (621)
T CHL00094 328 DIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSV 360 (621)
T ss_pred hCcEEEEECCccCChHHHHHHHHHhCCCcCcCC
Confidence 578999999999999999999999998875433
No 45
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=94.40 E-value=0.078 Score=50.02 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=76.8
Q ss_pred hhchhHHHHHHHHhcCCC--CCHH-----HHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEc----CCCCCCHH
Q psy9355 32 VAVAGAAMNWLRDNVGMV--TGVE-----EIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICG----ITEDTTRG 100 (204)
Q Consensus 32 ~~~~G~~~~W~~~~~~~~--~~~~-----~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~G----l~~~~~~~ 100 (204)
.++.|..++=+...+++. .+|+ .+|.++.. +...++.|+-. ... +-+.++.+.. +....++.
T Consensus 560 tSS~GRlFDaVAalLGl~~~~syEGqAa~~LE~lA~~---s~~~v~~~~~i--~~~--~id~~~l~~~ii~~l~~g~~~~ 632 (711)
T TIGR00143 560 TTSTGRLFDAVAAALGLCGERTYEGEAAIALEALALR---SDGIANYPFEI--KNK--VLDLKEFYQRFLEDLLVGEDRS 632 (711)
T ss_pred cCCCCcHHHHHHHHcCCCcccccchhhHHHHHHHHhc---CCCccccCccc--cCC--ccCHHHHHHHHHHHHHcCCCHH
Confidence 456788888888888763 2344 24444432 11122344321 000 1122222211 12235688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhC---CcEEeccC
Q psy9355 101 HIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCG---IPVGKNLT 161 (204)
Q Consensus 101 ~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g---~pv~~~~~ 161 (204)
++++++.+.++-.+...++.+.+.+ ..+.|+++||.++|..+++.+.+.++ .+|..++.
T Consensus 633 ~IAa~fh~tla~~L~~~a~~~~~~~--g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~ 694 (711)
T TIGR00143 633 KIAHIAHKFVASGLVEIATAIAVPF--GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRH 694 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCC
Confidence 9999999999988888877775533 46789999999999999999998875 67777664
No 46
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=94.39 E-value=0.15 Score=43.13 Aligned_cols=125 Identities=20% Similarity=0.202 Sum_probs=76.3
Q ss_pred hhchhHHHHHHHHhcCCC-CCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCC----------CCCCHH
Q psy9355 32 VAVAGAAMNWLRDNVGMV-TGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGIT----------EDTTRG 100 (204)
Q Consensus 32 ~~~~G~~~~W~~~~~~~~-~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~----------~~~~~~ 100 (204)
-.+.|..++-+...+++. ..-..++.+|.......-.+.+|+... ...+-+.+|.+..+. ...++.
T Consensus 156 d~S~GrlfD~va~lLGl~y~g~~~iE~lA~~~~~~~~~~~~~~~~~---~~~~~s~sgl~~~~~~~~~~~~~~~~~~~~~ 232 (305)
T TIGR00329 156 DDAVGEAFDKVARLLGLGYPGGPKIEELAKKGDKLPFYFPLPYTVK---PMLDFSFSGLKTAALRKIEKLKKNLNEATKE 232 (305)
T ss_pred CchhhHHHHHHHHHcCCCCCChHHHHHHHhhCCCccccCCCccccC---CCCcEEchHHHHHHHHHHHhcccccccccHH
Confidence 456889999999888862 222346666643211110112232211 000111111110000 013478
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEeccC
Q psy9355 101 HIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNLT 161 (204)
Q Consensus 101 ~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~~ 161 (204)
++.+++.+.++-.+-+.++...+.+ .+++|.++||.+.|..+++.+.+.+ |.++.+++.
T Consensus 233 ~iAasfq~~l~~~l~~~~~~~~~~~--g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~ 294 (305)
T TIGR00329 233 DIAYSFQETAFDHLIEKTKRALKDT--GPKELVLVGGVSANKRLREMLETLCQELNVEFYYPPL 294 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 8999999999888888877776543 4678999999999999999999887 667877765
No 47
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=94.37 E-value=0.19 Score=43.36 Aligned_cols=137 Identities=15% Similarity=0.110 Sum_probs=84.7
Q ss_pred cceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCCC--CCCCCCCCcEEEEcCCC----
Q psy9355 23 PVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLY--APYWQPDARGIICGITE---- 95 (204)
Q Consensus 23 p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r--~P~~~~~~~g~~~Gl~~---- 95 (204)
++.|--.|++.-||+++-=|...+-...+++++.++|++-. ..-.+ .+-+..|.. .+.-.++..++-+|=-.
T Consensus 175 ~~~~~rvgGs~iGGgT~~GL~~llt~~~~~~e~~~la~~G~~~~vDl-lV~DIyg~~y~~~~L~~~~~AssFGk~~~~~~ 253 (341)
T PF03630_consen 175 PNQFERVGGSSIGGGTFWGLCSLLTGCKSFDEILELAKKGDNSNVDL-LVGDIYGGDYNKIGLPGDLTASSFGKVQSKAK 253 (341)
T ss_dssp TTEEEEEEEES-SHHHHHHHHHHHH---SHHHHHHHHHH--GGGTSE-EHHHHHSS-BGGGTB-TTSEEETTCCGGSHHH
T ss_pred CCceEEEeccccchHhHHHHHHHhcCCCCHHHHHHHhcCCCccccCc-eeeeccCCCcccCCCCHHHHHhhhhhhhhccc
Confidence 56777777777888877666666533578999999998643 22223 345555554 22345566666555322
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccc-cHHHHHHHH---hhh---CCcEEeccCC
Q psy9355 96 ---DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA-NKHLMQTQA---DLC---GIPVGKNLTG 162 (204)
Q Consensus 96 ---~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~-s~~~~Qi~A---dv~---g~pv~~~~~~ 162 (204)
..+++|++|+++.-|++.+-++.-...+. ..+++|+.+|.-.+ ++..++.++ +.. ++....++..
T Consensus 254 ~~~~~~~~Dia~sll~mv~~nIg~la~l~A~~--~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~ 328 (341)
T PF03630_consen 254 RKDSFSKEDIAKSLLNMVSNNIGQLAYLHAKI--HGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHE 328 (341)
T ss_dssp H-CC--HHHHHHHHHHHHHHHHHHHHHHHHHH--HT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTT
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCC
Confidence 23689999999999999998876555443 35789999999996 578888888 443 3444455554
No 48
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=94.34 E-value=0.16 Score=43.83 Aligned_cols=125 Identities=15% Similarity=0.170 Sum_probs=84.5
Q ss_pred ceEEecchh--hchhHHHHHHHHhcCCCC---CHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCC---
Q psy9355 24 VVYALEGSV--AVAGAAMNWLRDNVGMVT---GVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITE--- 95 (204)
Q Consensus 24 ~~y~~~g~~--~~~G~~~~W~~~~~~~~~---~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~--- 95 (204)
+.|-+.|.+ -+.|.+++-+.+.+++.. .=..+|++|++. . ..+-+|.-. .+..=+|.|+..
T Consensus 144 ~~~~ilG~T~Dda~Gea~DKvar~LGL~~yp~gGp~iE~lA~~g--~-~~~~~P~~~--------~~~dfSFSGlkTav~ 212 (345)
T PTZ00340 144 HRYRIFGETIDIAVGNCLDRFARLLNLSNDPAPGYNIEQLAKKG--K-NLIELPYVV--------KGMDMSFSGILTYIE 212 (345)
T ss_pred CeEEEEEeecccchhHHHHHHHHHhCCCCCCCChHHHHHHHhhC--C-CccCCCCCC--------CCCcEECccHHHHHH
Confidence 556655543 458899999999998741 246788888642 2 222234321 112234544431
Q ss_pred --------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---
Q psy9355 96 --------------------DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC--- 152 (204)
Q Consensus 96 --------------------~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~--- 152 (204)
...+.++++++.|.++-.+.+.++..-+.. ..++|+++||.+.|..+++.+.+.+
T Consensus 213 ~~i~~~~~~~~~~~~~~~~~~~~~~diaasfq~~v~~~L~~k~~~a~~~~--~~~~lvv~GGVAaN~~LR~~l~~~~~~~ 290 (345)
T PTZ00340 213 DLVEHPQFKDVVSEIVPPEEEFFTDDLCFSLQETIFAMLVEVTERAMSHC--GSNEVLIVGGVGCNLRLQEMMQQMAKER 290 (345)
T ss_pred HHHHhccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEcCCHHHHHHHHHHHHHHHHHc
Confidence 012568999999999888877766654433 5688999999999999999999886
Q ss_pred CCcEEeccC
Q psy9355 153 GIPVGKNLT 161 (204)
Q Consensus 153 g~pv~~~~~ 161 (204)
+.++..|+.
T Consensus 291 ~~~~~~p~~ 299 (345)
T PTZ00340 291 GGKLFAMDE 299 (345)
T ss_pred CCEEEeCCh
Confidence 788888775
No 49
>PLN02902 pantothenate kinase
Probab=94.23 E-value=1.5 Score=42.13 Aligned_cols=128 Identities=15% Similarity=0.068 Sum_probs=88.4
Q ss_pred cceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CCCeEEecCCCCC-C--CCCCCCCCcEEEEc--CC--
Q psy9355 23 PVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH-TGDVYFVPAFSGL-Y--APYWQPDARGIICG--IT-- 94 (204)
Q Consensus 23 p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~-~~g~~~~P~l~G~-r--~P~~~~~~~g~~~G--l~-- 94 (204)
++.|--.|++.-||+++-=|...+-...+|+++-++|+.-.. .-. +.+-+..|. . .+.-..++.++-+| ..
T Consensus 233 ~~~~~RVgGTsIGGGT~~GL~~LLtg~~sFdEll~LA~~Gd~~~vD-llVgDIYGg~~y~~~GL~~d~iASSFGKv~~~~ 311 (876)
T PLN02902 233 DGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNSAID-MLVGDIYGGMDYSKIGLSASTIASSFGKVISEN 311 (876)
T ss_pred CCcEEEecccccccHhHHHHHHHHcCCCCHHHHHHHHhcCCccccC-eeeccccCCCCcCCCCCCcchhhhccCcccccc
Confidence 567877788888888877676666446789999999976431 122 345666662 1 12234566666666 21
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccc-cHHHHHHHHhhhC
Q psy9355 95 ---EDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA-NKHLMQTQADLCG 153 (204)
Q Consensus 95 ---~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~-s~~~~Qi~Adv~g 153 (204)
.+.+++|++|+++--|++.+-++--...+ ...+++|+.+|.-.+ ++.-|+.++-.++
T Consensus 312 ~~~~~~s~eDiarSLL~mIs~NIGqiA~L~A~--~~~ikrIvF~G~fIr~h~~tm~~ls~Ai~ 372 (876)
T PLN02902 312 KELSDYRPEDISLSLLRMISYNIGQISYLNAL--RFGLKRIFFGGFFIRGHAYTMDTISFAVH 372 (876)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCEEEEecceecCCcchHHHHHHHHH
Confidence 23569999999999999999887654443 356889999999986 5777787775554
No 50
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=94.03 E-value=0.22 Score=42.44 Aligned_cols=120 Identities=17% Similarity=0.135 Sum_probs=75.5
Q ss_pred hchhHHHHHHHHhcCCCC-CHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEE---c-CCCCCCHHHHHHHHH
Q psy9355 33 AVAGAAMNWLRDNVGMVT-GVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIIC---G-ITEDTTRGHIVRAAL 107 (204)
Q Consensus 33 ~~~G~~~~W~~~~~~~~~-~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~---G-l~~~~~~~~l~rAvl 107 (204)
.+.|..++.+...+++.. .-..+++++... .. .+-+|+.. ... +-+.++.+. . +....++.++++++.
T Consensus 151 ~s~GrlfDava~~LGl~~~G~~~le~la~~~--~~-~~~~~~~~-~~~---~~~fs~l~~~~~~~~~~~~~~~diAasfq 223 (322)
T TIGR03722 151 IGLGNALDKFAREVGLGHPGGPKIEELAEKG--KE-YIELPYTV-KGM---DLSFSGLLTAALRAYKKGARLEDVCYSLQ 223 (322)
T ss_pred ccchHHHHHHHHHhCCCCCChHHHHHHHhcC--CC-cccCCccC-CCC---cCchHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567999999999888632 113566665432 11 11123211 000 001111110 0 011234789999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhh---hCCcEEeccC
Q psy9355 108 EAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADL---CGIPVGKNLT 161 (204)
Q Consensus 108 Egia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv---~g~pv~~~~~ 161 (204)
+.++-.+.+..+...+.+ ..++|.++||.+.|..+++.+.+. .|.+|.+++.
T Consensus 224 ~~l~~~l~~~a~~~~~~~--g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~ 278 (322)
T TIGR03722 224 ETAFAMLVEVTERALAHT--GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPP 278 (322)
T ss_pred HHHHHHHHHHHHHHHHHh--CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCC
Confidence 999888888887776644 467899999999999999999994 4778887765
No 51
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=93.95 E-value=0.2 Score=42.64 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEeccC
Q psy9355 98 TRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNLT 161 (204)
Q Consensus 98 ~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~~ 161 (204)
++.++++++.+.++-.+.+.++...+.+ ..++|.++||.+.|..+++.+.+.+ +.++.+++.
T Consensus 231 ~~~~iA~~~q~~l~~~l~~~~~~~~~~~--~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~ 295 (314)
T TIGR03723 231 DKADIAASFQAAVVDVLVEKTKRALKKT--GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPL 295 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 4678999999999988888877776543 4678999999999999999999998 888888776
No 52
>PRK13410 molecular chaperone DnaK; Provisional
Probab=93.71 E-value=0.077 Score=49.78 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=28.9
Q ss_pred CcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355 128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL 160 (204)
Q Consensus 128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~ 160 (204)
.++.|+++||++|.|.+.+++.+++|.++....
T Consensus 328 dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~ 360 (668)
T PRK13410 328 DIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNV 360 (668)
T ss_pred hCcEEEEECCccccHHHHHHHHHHcCCCcccCC
Confidence 578999999999999999999999998765433
No 53
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=93.64 E-value=0.33 Score=40.69 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhC--CcEEeccC
Q psy9355 102 IVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCG--IPVGKNLT 161 (204)
Q Consensus 102 l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g--~pv~~~~~ 161 (204)
-++-++++++|+...-+-.+...+.-+++-|+++||.++++.++..+.+-+. .||.+-+.
T Consensus 270 ~a~~~~~AmayQVaKeIG~~savL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PG 331 (358)
T COG3426 270 KAKLAYEAMAYQVAKEIGAMSAVLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPG 331 (358)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCC
Confidence 4456778899999988888877777789999999999999999999999877 57766554
No 54
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=93.62 E-value=0.16 Score=43.34 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CCcc-eEEEecCccccHHHHHHHHhhhCCcEEeccCC---Cccccccc
Q psy9355 101 HIVRAALEAICFQTRDILEAMKKDCG-IQLI-KLQVDGGMTANKHLMQTQADLCGIPVGKNLTG---GKDGGKYI 170 (204)
Q Consensus 101 ~l~rAvlEgia~~~~~~~e~l~~~~g-~~~~-~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---~a~g~g~~ 170 (204)
+++...++.+.-.+++.++....... -.++ .|+++||+|+-+.+.+++++.+++||.+.... .+.|++.+
T Consensus 246 eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~ 320 (336)
T PRK13928 246 EALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKM 320 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHH
Confidence 44555555565555555554321011 1234 69999999999999999999999999887642 34555443
No 55
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=92.70 E-value=0.16 Score=47.20 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=29.2
Q ss_pred CcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355 128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL 160 (204)
Q Consensus 128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~ 160 (204)
.++.|+++||++|.|.+.+++.+.+|.++....
T Consensus 326 ~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~ 358 (627)
T PRK00290 326 DIDEVILVGGSTRMPAVQELVKEFFGKEPNKGV 358 (627)
T ss_pred hCcEEEEECCcCCChHHHHHHHHHhCCCCCcCc
Confidence 578999999999999999999999998876543
No 56
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=92.62 E-value=0.46 Score=40.68 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=29.4
Q ss_pred cc-eEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 129 LI-KLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 129 ~~-~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
++ .|+++||+|+-+.+.+++++.+++||.+..+
T Consensus 278 ~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~ 311 (335)
T PRK13929 278 VDRGVILTGGGALLNGIKEWLSEEIVVPVHVAAN 311 (335)
T ss_pred cCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCC
Confidence 44 5999999999999999999999999988654
No 57
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=92.53 E-value=0.22 Score=43.22 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=29.6
Q ss_pred cce-EEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 129 LIK-LQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 129 ~~~-I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
+.+ |+++||+|+.+.+.+++.+.|+.||.+...
T Consensus 314 i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P 347 (371)
T TIGR01174 314 LNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLP 347 (371)
T ss_pred CCCEEEEeChHHcccCHHHHHHHHhCCCeEEECC
Confidence 455 999999999999999999999999988654
No 58
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=92.47 E-value=0.29 Score=41.71 Aligned_cols=61 Identities=15% Similarity=0.187 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-c-ceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 101 HIVRAALEAICFQTRDILEAMKKDCGIQ-L-IKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 101 ~l~rAvlEgia~~~~~~~e~l~~~~g~~-~-~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
+++...++++.-.++..++......... . +.|+++||+|+-|.+.+.+++.+++||.+...
T Consensus 250 e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~ 312 (333)
T TIGR00904 250 EALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADD 312 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCC
Confidence 4444555555555555444321111112 2 36999999999999999999999999988764
No 59
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=92.29 E-value=0.52 Score=42.94 Aligned_cols=117 Identities=16% Similarity=0.150 Sum_probs=75.8
Q ss_pred hhchhHHHHHHHHhcCCCCC-HHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCC--------CCCHHHH
Q psy9355 32 VAVAGAAMNWLRDNVGMVTG-VEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITE--------DTTRGHI 102 (204)
Q Consensus 32 ~~~~G~~~~W~~~~~~~~~~-~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~--------~~~~~~l 102 (204)
-.+.|..++-+...++.... --.++.+|... .. ..-+|+-. .+ ..=+|.|+-. ..+..++
T Consensus 153 d~S~G~~fD~va~~Lg~~~~g~~~le~lA~~~--~~-~~~~~~~~------~~--~~~~~~~l~~~~~~~~~~~~~~~~i 221 (535)
T PRK09605 153 DIGVGNALDKFARHVGLPHPGGPKIEKLAKDG--KK-YIDLPYVV------KG--MDFSFSGLLTAAKRAYDAGEPLEDV 221 (535)
T ss_pred chhhhHHHHHHHHHhCCCCCCCHHHHHHHhcC--CC-cccCCCcC------CC--CCEeehHHHHHHHHHHHcCCCHHHH
Confidence 44678999999988876321 12456666432 11 11133210 00 0112333321 1246789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEeccC
Q psy9355 103 VRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNLT 161 (204)
Q Consensus 103 ~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~~ 161 (204)
++++.+.++-.+.+.++...+.+ ..++|.++||.+.|..+++.+.+.+ +.+|.+++.
T Consensus 222 A~~~q~~l~~~l~~~~~~~~~~~--g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~ 281 (535)
T PRK09605 222 CYSLQETAFAMLTEVTERALAHT--GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEP 281 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 99999999888888877776544 4678999999999999999999765 778888775
No 60
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=92.25 E-value=0.3 Score=41.53 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-cc-eEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 101 HIVRAALEAICFQTRDILEAMKKDCGIQ-LI-KLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 101 ~l~rAvlEgia~~~~~~~e~l~~~~g~~-~~-~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
+++...++++.-.+++.++......... .+ .|+++||+++-+.+.+.+.+.++.||.+...
T Consensus 247 e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~ 309 (334)
T PRK13927 247 EALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAED 309 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCC
Confidence 4555555666555555554431100111 23 5999999999999999999999999988654
No 61
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=91.95 E-value=0.23 Score=46.21 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=28.0
Q ss_pred CcceEEEecCccccHHHHHHHHhhhCCcEEe
Q psy9355 128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158 (204)
Q Consensus 128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~ 158 (204)
.++.|+++||++|.|...+++++.+|.++..
T Consensus 328 ~i~~ViLvGGssriP~v~~~l~~~fg~~~~~ 358 (616)
T PRK05183 328 EVKEVVMVGGSTRVPLVREAVGEFFGRTPLT 358 (616)
T ss_pred cCCEEEEECCcccChHHHHHHHHHhccCcCc
Confidence 5789999999999999999999999987654
No 62
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=91.89 E-value=0.31 Score=45.72 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=28.6
Q ss_pred CcceEEEecCccccHHHHHHHHhhhCCcEEec
Q psy9355 128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGKN 159 (204)
Q Consensus 128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~ 159 (204)
.++.|+++||.++.|...+++.+.+|.++...
T Consensus 367 ~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~ 398 (663)
T PTZ00400 367 ELNDVILVGGMTRMPKVSETVKKIFGKEPSKG 398 (663)
T ss_pred HCcEEEEECCccCChHHHHHHHHHhCCCcccC
Confidence 46899999999999999999999999887543
No 63
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=91.71 E-value=0.23 Score=45.89 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=29.0
Q ss_pred CcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355 128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL 160 (204)
Q Consensus 128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~ 160 (204)
.++.|+++||.+|.|...+++.+.+|.++....
T Consensus 324 ~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~ 356 (595)
T TIGR02350 324 DIDEVILVGGSTRIPAVQELVKDFFGKEPNKSV 356 (595)
T ss_pred HCcEEEEECCcccChHHHHHHHHHhCCcccCCc
Confidence 578999999999999999999999998776543
No 64
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=91.49 E-value=0.4 Score=40.75 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-Ccce-EEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 101 HIVRAALEAICFQTRDILEAMKKDCGI-QLIK-LQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 101 ~l~rAvlEgia~~~~~~~e~l~~~~g~-~~~~-I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
+++...++.+.-.++..++........ ..++ |+++||+++-+.+.+.+++.++.|+.+...
T Consensus 251 e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~ 313 (335)
T PRK13930 251 EALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAED 313 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCC
Confidence 344455555555555555433110001 1244 999999999999999999999999987654
No 65
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=91.00 E-value=0.39 Score=44.52 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=30.5
Q ss_pred CCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 127 IQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 127 ~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
..++.|+++||.+|.|...+++.+.+|+++....+
T Consensus 307 ~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~n 341 (595)
T PRK01433 307 PNIDGVILVGGATRIPLIKDELYKAFKVDILSDID 341 (595)
T ss_pred ccCcEEEEECCcccChhHHHHHHHHhCCCceecCC
Confidence 35899999999999999999999999998765433
No 66
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=90.81 E-value=0.22 Score=42.68 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=27.9
Q ss_pred ceEEEecCccccHHHHHHHHhhhCCcEEeccCC
Q psy9355 130 IKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG 162 (204)
Q Consensus 130 ~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~ 162 (204)
+.|+++||+|+-+-+-+.+++-+++||.+.+..
T Consensus 275 ~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P 307 (326)
T PF06723_consen 275 NGIVLTGGGALLRGLDEYISEETGVPVRVADDP 307 (326)
T ss_dssp H-EEEESGGGGSBTHHHHHHHHHSS-EEE-SST
T ss_pred CCEEEEChhhhhccHHHHHHHHHCCCEEEcCCH
Confidence 459999999999999999999999999998873
No 67
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=89.67 E-value=0.42 Score=44.84 Aligned_cols=54 Identities=13% Similarity=0.216 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEecCccccHHHHHHHHhhhCCcEEe
Q psy9355 101 HIVRAALEAICFQTRDILEAMKKDCGI---QLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158 (204)
Q Consensus 101 ~l~rAvlEgia~~~~~~~e~l~~~~g~---~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~ 158 (204)
++.+.+++-+.-.+++.++ + .+. .++.|+++||.+|-|...+++.+.+|.+...
T Consensus 327 ~l~~~l~~r~~~~v~~~L~---~-a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~ 383 (657)
T PTZ00186 327 GITQRLIERSIAPCKQCMK---D-AGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFR 383 (657)
T ss_pred HHHHHHHHHHHHHHHHHHH---H-cCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccc
Confidence 4445555544443333333 2 343 5789999999999999999999999986544
No 68
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=89.42 E-value=0.61 Score=42.84 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 102 IVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 102 l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
++.-+++.+.-.+..+++.... ...+++.|.++||+++.|.+.+++.+.++.++.....
T Consensus 303 l~~~~~~~~~~~i~~~l~~~~~-~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~ 361 (602)
T PF00012_consen 303 LCEPLLERIIEPIEKALKDAGL-KKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVN 361 (602)
T ss_dssp HTHHHHHHTHHHHHHHHHHTT---GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-
T ss_pred cccccccccccccccccccccc-cccccceeEEecCcccchhhhhhhhhccccccccccc
Confidence 3344444444444443332211 1235789999999999999999999999987765443
No 69
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=89.03 E-value=0.94 Score=42.03 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=28.4
Q ss_pred CcceEEEecCccccHHHHHHHHhhhCCcEEec
Q psy9355 128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGKN 159 (204)
Q Consensus 128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~ 159 (204)
.++.|+++||+++.|...+++.+.++.++...
T Consensus 312 ~id~ViLvGGssriP~V~~~l~~~f~~~~~~~ 343 (599)
T TIGR01991 312 EIKGVVLVGGSTRMPLVRRAVAELFGQEPLTD 343 (599)
T ss_pred hCCEEEEECCcCCChHHHHHHHHHhCCCCCCC
Confidence 57899999999999999999999999876543
No 70
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.83 E-value=2.5 Score=36.23 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 100 GHIVRAALEAICFQTRDILEAMKKDCG-IQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 100 ~~l~rAvlEgia~~~~~~~e~l~~~~g-~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
.+.++-+++-+.-++++.++-+-...+ ..+++|+++||+++-.-+-+.+.+-++.|+.+...
T Consensus 258 ~~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t~vanP 320 (354)
T COG4972 258 SEVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPTEVANP 320 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCCeEeeCH
Confidence 467899999999999999998765333 46899999999999999999999999999988654
No 71
>PTZ00297 pantothenate kinase; Provisional
Probab=87.60 E-value=22 Score=36.77 Aligned_cols=141 Identities=17% Similarity=0.123 Sum_probs=86.8
Q ss_pred ceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHH---HHhcC-CCCCeEEecCCCCC---C-CCCCCCCCcEEEEcC--
Q psy9355 24 VVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESL---AESHR-HTGDVYFVPAFSGL---Y-APYWQPDARGIICGI-- 93 (204)
Q Consensus 24 ~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~---a~~~~-~~~g~~~~P~l~G~---r-~P~~~~~~~g~~~Gl-- 93 (204)
+.|--.|++.-||+++-=|...+-...+|+++-++ |+.-. ..-.+ .+=++.|. . .|....++.++-+|=
T Consensus 1235 ~~~~RvgGt~iGGGT~~GL~~llt~~~~f~e~l~~~~la~~Gd~~~vDl-lVgDIyg~~~~~~~~~L~~~~iASsfGk~~ 1313 (1452)
T PTZ00297 1235 GSHVRVGGSPIGGATFWGLVRTMTNVTSWEEVMEIMRLDGPGDNKNVDL-LVGDIYGYNAKDLPAMLSVDTVASTFGKLG 1313 (1452)
T ss_pred CcEEEecCcccccHhHHHHHHHhcCCCCHHHHHHHHHHhhCCCccccce-EEeeccCCCcccccCCCCcceeeeccCccc
Confidence 56777777888888776666665445789988774 44322 11112 23333441 1 111233444444440
Q ss_pred ---------------------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy9355 94 ---------------------------------------------TEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQ 128 (204)
Q Consensus 94 ---------------------------------------------~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~ 128 (204)
....+++|++|+++-.|.+.+-++--...+ ...
T Consensus 1314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~sll~~is~nIgqia~l~a~--~~~ 1391 (1452)
T PTZ00297 1314 TERFYEMMRGVSTAHFSDDDAAGEILSPKALKSPTVISELPVRNGTKKASAIDIVRSLLNMISSNVTQLAYLHSR--VQG 1391 (1452)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH--HcC
Confidence 001358999999999999999887543333 457
Q ss_pred cceEEEecCcc-ccHHHHHHHHhhhC------CcEEeccCC---Ccccc
Q psy9355 129 LIKLQVDGGMT-ANKHLMQTQADLCG------IPVGKNLTG---GKDGG 167 (204)
Q Consensus 129 ~~~I~~~GGga-~s~~~~Qi~Adv~g------~pv~~~~~~---~a~g~ 167 (204)
+++|+.+|+-. .++..++.++..++ +....+++. +|+|+
T Consensus 1392 ~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga 1440 (1452)
T PTZ00297 1392 VPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGC 1440 (1452)
T ss_pred CCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhh
Confidence 89999999954 68999999998874 444555553 44554
No 72
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=86.71 E-value=0.87 Score=38.86 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-cce-EEEecCccccHHHHHHHHhhhCCcEEeccCC---Cccccccc
Q psy9355 103 VRAALEAICFQTRDILEAMKKDCGIQ-LIK-LQVDGGMTANKHLMQTQADLCGIPVGKNLTG---GKDGGKYI 170 (204)
Q Consensus 103 ~rAvlEgia~~~~~~~e~l~~~~g~~-~~~-I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---~a~g~g~~ 170 (204)
++-.+++|.-.+|..+|..--++..+ .++ ++++||||.-+-+-+.+++-++.||.+.+.. .+.|+|..
T Consensus 256 l~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~ 328 (342)
T COG1077 256 LEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKA 328 (342)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchh
Confidence 34455555556666555421111112 244 9999999988888999999999999998873 45677653
No 73
>PLN03184 chloroplast Hsp70; Provisional
Probab=86.39 E-value=0.96 Score=42.59 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=28.5
Q ss_pred CcceEEEecCccccHHHHHHHHhhhCCcEEec
Q psy9355 128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGKN 159 (204)
Q Consensus 128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~ 159 (204)
+++.|+++||.+|.|...+++.+.+|.++...
T Consensus 365 dId~ViLvGGssriP~V~~~i~~~fg~~~~~~ 396 (673)
T PLN03184 365 DIDEVILVGGSTRIPAVQELVKKLTGKDPNVT 396 (673)
T ss_pred HccEEEEECCccccHHHHHHHHHHhCCCcccc
Confidence 46899999999999999999999999877543
No 74
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=86.31 E-value=1.8 Score=37.56 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=37.6
Q ss_pred CCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCcce-EEEecCccccHHHHHHHHhhhCCc-EEeccC
Q psy9355 97 TTRGHIV---RAALEAICFQTRDILEAMKKDCGIQLIK-LQVDGGMTANKHLMQTQADLCGIP-VGKNLT 161 (204)
Q Consensus 97 ~~~~~l~---rAvlEgia~~~~~~~e~l~~~~g~~~~~-I~~~GGga~s~~~~Qi~Adv~g~p-v~~~~~ 161 (204)
....+++ +..+|-+...+ ++.+.+.+| .++ |.++||.+.|-.+++.+++-.+.. |.+++.
T Consensus 133 ~~~~dlAa~~Q~~~E~~v~~~---~~~~~~~~g--~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa 197 (360)
T PF02543_consen 133 QRHADLAASAQKVLEEIVLHL---VRHLLERTG--IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPA 197 (360)
T ss_dssp SS-HHHHHHHHHHHHHHHHHH---HHHHHHHHT----SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TT
T ss_pred chHHHHHHHHHHHHHHHHHHH---HHHHHHHhC--CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCC
Confidence 3556666 55666665544 333334355 556 999999999999999999997754 888775
No 75
>KOG2201|consensus
Probab=85.97 E-value=4.5 Score=34.70 Aligned_cols=129 Identities=15% Similarity=0.093 Sum_probs=80.4
Q ss_pred cceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCC--CCCCCcEEEEc------CC
Q psy9355 23 PVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPY--WQPDARGIICG------IT 94 (204)
Q Consensus 23 p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~--~~~~~~g~~~G------l~ 94 (204)
|+.|=-.|+++-||+++==|-..+-...++||+-++|.+-...+-=+++-...|-.... -.+++.++-+| =.
T Consensus 193 ~~~feRvgGsSlGGGTf~GL~~LLTg~~sfdE~LelA~~Gd~~~vD~LV~DIYGg~y~~fGL~~~~iASSFGk~~~~eK~ 272 (371)
T KOG2201|consen 193 PDNFERVGGSSLGGGTFLGLGSLLTGCKSFDELLELASRGDNRNVDMLVRDIYGGDYSRFGLKGDLIASSFGKVIRKEKE 272 (371)
T ss_pred CCceeEecccccCCcchhhhHhHhcCCCCHHHHHHHHhcCCCchhhhhhhhccCccHhhcCCChhHHHHHHHHHhhcccc
Confidence 77787777777777765444444433578999999887643111112334444432110 01112222121 12
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccc-cHHHHHHHHhhhC
Q psy9355 95 EDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA-NKHLMQTQADLCG 153 (204)
Q Consensus 95 ~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~-s~~~~Qi~Adv~g 153 (204)
.+.+++|++||.+--|.+.+-++.-.. . ....++||+..|--.| ++.-|..+|=.++
T Consensus 273 ~~~s~eDia~SlL~mIsnNIGqiAyl~-A-~~~ni~rV~FgG~fiR~~~itM~tLsyAi~ 330 (371)
T KOG2201|consen 273 LSVSKEDIARSLLRMISNNIGQIAYLC-A-LNENIKRVYFGGFFIRGHPITMKTLSYAIN 330 (371)
T ss_pred cccChHHHHHHHHHHHHhhHHHHHHHH-H-HHhCccEEEEeeeEEecCceehHHHHHHHH
Confidence 347899999999999999998876544 3 3567899999998887 5777888776554
No 76
>PRK13411 molecular chaperone DnaK; Provisional
Probab=85.80 E-value=1.6 Score=40.97 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=26.5
Q ss_pred cceEEEecCccccHHHHHHHHhhhC-CcEEe
Q psy9355 129 LIKLQVDGGMTANKHLMQTQADLCG-IPVGK 158 (204)
Q Consensus 129 ~~~I~~~GGga~s~~~~Qi~Adv~g-~pv~~ 158 (204)
++.|+++||.+|.|...+++.+.++ .++..
T Consensus 328 id~ViLvGGssriP~v~~~l~~~f~~~~~~~ 358 (653)
T PRK13411 328 IDRVILVGGSTRIPAVQEAIQKFFGGKQPDR 358 (653)
T ss_pred CcEEEEECCCCCcchHHHHHHHHcCCcCcCC
Confidence 6899999999999999999999997 55544
No 77
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=85.50 E-value=1.3 Score=41.51 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=26.4
Q ss_pred CcceEEEecCccccHHHHHHHHhhhC-CcEE
Q psy9355 128 QLIKLQVDGGMTANKHLMQTQADLCG-IPVG 157 (204)
Q Consensus 128 ~~~~I~~~GGga~s~~~~Qi~Adv~g-~pv~ 157 (204)
.++.|.++||.+|.|...+++.+.++ .++.
T Consensus 332 ~i~~ViLvGGssriP~v~~~i~~~f~~~~~~ 362 (653)
T PTZ00009 332 SVHEVVLVGGSTRIPKVQSLIKDFFNGKEPC 362 (653)
T ss_pred HCcEEEEECCCCCChhHHHHHHHHhCCCCCC
Confidence 47899999999999999999999996 4553
No 78
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=85.30 E-value=4.5 Score=35.75 Aligned_cols=50 Identities=8% Similarity=0.116 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcc-ccHHHHHHHHhhhC
Q psy9355 104 RAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMT-ANKHLMQTQADLCG 153 (204)
Q Consensus 104 rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga-~s~~~~Qi~Adv~g 153 (204)
+-++|..+|+++..+-.+-..+.-.++-|+.+||.. +|+.+++.+.+-+.
T Consensus 299 ~lA~d~f~yri~k~Iga~~a~L~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 299 KLALDVFVYRLAKYIGSYAAALNGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 348899999999999888776634799999999999 88888888776544
No 79
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=84.45 E-value=5.3 Score=35.31 Aligned_cols=50 Identities=8% Similarity=0.080 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcc-ccHHHHHHHHhhhC
Q psy9355 104 RAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMT-ANKHLMQTQADLCG 153 (204)
Q Consensus 104 rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga-~s~~~~Qi~Adv~g 153 (204)
+-++|..+|+++..+-.+...++-.++-|+.+||.. +++.+++.+.+-++
T Consensus 303 ~lA~~~f~yri~k~Iga~~a~L~G~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 303 QLAIKMYVHRIAKYIGSYIASLEGNLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 348899999999999888776665689999999999 78887777766544
No 80
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=83.82 E-value=4 Score=38.37 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCC
Q psy9355 96 DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGI 154 (204)
Q Consensus 96 ~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~ 154 (204)
..++.+++.+...++|-.+.+++..+.+. ..+++|.++||...|+++++-+++.+..
T Consensus 663 ~~~~~~iA~~fh~~la~~~~e~~~~~a~~--~gi~~V~lsGGVf~N~~l~~~~~~~l~~ 719 (750)
T COG0068 663 KDEPEKIATKFHNALAEGFAELAVELAKK--YGINKVVLSGGVFQNRLLLERLAKYLKK 719 (750)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHh--cCccEEEeeCCeeecHHHHHHHHHHHHh
Confidence 46788899999999999888888888763 4578999999999999999999999985
No 81
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=83.31 E-value=6 Score=32.82 Aligned_cols=114 Identities=22% Similarity=0.214 Sum_probs=63.5
Q ss_pred hchhHHHHHHHHhcCCCCC-HHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCCCCCH----HHHHHHHH
Q psy9355 33 AVAGAAMNWLRDNVGMVTG-VEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTR----GHIVRAAL 107 (204)
Q Consensus 33 ~~~G~~~~W~~~~~~~~~~-~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~----~~l~rAvl 107 (204)
...|..++-..+.+++... -..+++++... +. +-+|. ...+..=+|.|+....-+ .++++++.
T Consensus 135 ~~~ge~~dk~~~~l~l~~~~g~~le~la~~~---~~-~~~p~--------~~~~~~~sFsG~~t~~~~~i~~~~iA~s~q 202 (268)
T PF00814_consen 135 DAIGEAFDKVARLLGLPYPGGPALEKLASEG---EA-FKFPR--------PLKNCDFSFSGLKTAVYRLIEKADIAASFQ 202 (268)
T ss_dssp SCHHHHHHHHHHHTT--SSHHHHHHHHHCT----S---------------SEETTEEEEHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccHHHHhhHHHHhccccccCcHHHHHHHhC---Cc-ceecc--------ceeeeeEEEEcccHHHHHHhhhhHHHHHHH
Confidence 4577888888877765322 23566666532 11 11221 111244556666532211 45677777
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh--CCcEEecc
Q psy9355 108 EAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC--GIPVGKNL 160 (204)
Q Consensus 108 Egia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~--g~pv~~~~ 160 (204)
+.++-.+.......-+. ...+.|.++||.+.|+.+++.+.+.. +.++..|+
T Consensus 203 ~~~~~~l~~~~~~a~~~--~~~~~lv~~GGVaaN~~lr~~l~~~~~~~~~~~~p~ 255 (268)
T PF00814_consen 203 EAIADHLAKKAPRALEK--PRAKSLVVSGGVAANKYLREGLRKLCSEGIKLFFPP 255 (268)
T ss_dssp HHHHHHHHHHHHHHHHH--HTCSEEEEESGGGGHHHHHHHHHHHHHHTSEEE---
T ss_pred HHHHHHHHHHHHHHHHh--hcccccchHHHHHHHHHHHHHHHHHHHcCCEEEcCC
Confidence 77666555555443222 35789999999999999998876543 67777766
No 82
>PRK07058 acetate kinase; Provisional
Probab=81.18 E-value=6.4 Score=34.66 Aligned_cols=50 Identities=12% Similarity=0.198 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcc-ccHHHHHHHHhhhC
Q psy9355 103 VRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMT-ANKHLMQTQADLCG 153 (204)
Q Consensus 103 ~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga-~s~~~~Qi~Adv~g 153 (204)
++-++|..+|+++..+-.+...+| .++-|+.+||.. +|+.+++.+.+-++
T Consensus 294 A~lA~d~f~yri~k~IGa~~a~Lg-~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 294 AREALDLFALRIAGEIARLAATLG-GLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 556899999999999999887775 789999999999 78877777666544
No 83
>PRK12379 propionate/acetate kinase; Provisional
Probab=80.16 E-value=8.7 Score=33.86 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcccc-HHHHHHHHhh
Q psy9355 104 RAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTAN-KHLMQTQADL 151 (204)
Q Consensus 104 rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s-~~~~Qi~Adv 151 (204)
+-++|..+|+++..+-.+-..++ .++-|+.+||...| ...++.+.+-
T Consensus 294 ~lA~d~f~yri~k~IGa~~a~L~-~vDaIVFTGGIGen~~~vR~~i~~~ 341 (396)
T PRK12379 294 QLAIKTFVHRIARHIAGHAASLH-RLDGIIFTGGIGENSSLIRRLVMEH 341 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhh
Confidence 34889999999999988877777 89999999999954 5555555543
No 84
>PRK12440 acetate kinase; Reviewed
Probab=79.39 E-value=8.6 Score=33.91 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHH-HHHHHHhhhC
Q psy9355 104 RAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKH-LMQTQADLCG 153 (204)
Q Consensus 104 rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~-~~Qi~Adv~g 153 (204)
+-+++..+|+++..+-.+...++ .++-|+.+||...|+. +++.+.+-++
T Consensus 297 ~lA~d~f~yri~k~Ig~~~a~l~-gvDaiVFTgGIGen~~~vr~~i~~~l~ 346 (397)
T PRK12440 297 TLAFEVFTYRVAKYIASYLAALD-SLDGIIFTGGIGENSLPIRREILKNLK 346 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 44888999999999988877777 7999999999997654 6666555443
No 85
>PRK03011 butyrate kinase; Provisional
Probab=79.09 E-value=8.2 Score=33.54 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhC--CcEEecc
Q psy9355 102 IVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCG--IPVGKNL 160 (204)
Q Consensus 102 l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g--~pv~~~~ 160 (204)
.++.+++-.++.+...+-.+...++-+++.|+++||.+.++.+.+.+-+.+. .||.+..
T Consensus 269 ~A~~ald~~~~~lak~I~~l~~~L~gdpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p 329 (358)
T PRK03011 269 KAKLVYEAMAYQIAKEIGAMAAVLKGKVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYP 329 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEe
Confidence 3456888889999888888876654478999999999988877776666555 2555433
No 86
>PRK07157 acetate kinase; Provisional
Probab=78.19 E-value=9.8 Score=33.60 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHH-HHHHHHhhh
Q psy9355 103 VRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKH-LMQTQADLC 152 (204)
Q Consensus 103 ~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~-~~Qi~Adv~ 152 (204)
++-++|..+|+++..+-.+-..++-.++-|+.+||...|+. .++.+.+-+
T Consensus 295 A~lA~d~f~yri~k~Ig~~~a~L~G~vDaiVFTgGIGen~~~vr~~i~~~l 345 (400)
T PRK07157 295 AKFALDLYAQKIVDYLANYINKIGKKIDAIVFTAGVGENSAFVRELVINKI 345 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEECCccccCcHHHHHHHHhhc
Confidence 34488999999999999887766656899999999997654 666665543
No 87
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=77.28 E-value=14 Score=30.35 Aligned_cols=62 Identities=18% Similarity=0.278 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHH-----HhhhCCcEEeccC
Q psy9355 100 GHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQ-----ADLCGIPVGKNLT 161 (204)
Q Consensus 100 ~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~-----Adv~g~pv~~~~~ 161 (204)
......|+++.+..+.+.+..+.+..+.....|+++||..+|+.+.+-+ -.+...|+.++..
T Consensus 192 d~~a~~Il~~a~~~la~~i~~~~~~~~~~~~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 258 (271)
T PF01869_consen 192 DEVARDILAEAADELAELIKAVLKRLGPEKEPVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVE 258 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTCTCCCCSEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCccCchHHHHHHHHHHHHhcCCCceEECCC
Confidence 3456778888888888887777654443333499999999997666555 4445555555443
No 88
>KOG0103|consensus
Probab=76.66 E-value=7.6 Score=36.45 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 99 RGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 99 ~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
-++|...+++=+---+...++.. ....-++..|=+.||++|.|..-+++++.+|++..+.-+
T Consensus 305 fEel~~plL~rv~~p~~~~l~d~-~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN 366 (727)
T KOG0103|consen 305 FEELSAPLLERVEVPLLKALADA-KLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLN 366 (727)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh-cCccccceeEEEecCcccchHHHHHHHHHhCCccccccc
Confidence 34566777776666555555542 222345668889999999999999999999999988665
No 89
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=75.33 E-value=15 Score=31.81 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhC--CcEEeccC
Q psy9355 102 IVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCG--IPVGKNLT 161 (204)
Q Consensus 102 l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g--~pv~~~~~ 161 (204)
.++.++|-.++.+...+-.+...++-+++.|+++||.+.++.+...+-+.+. .||.+.+.
T Consensus 267 ~A~~a~d~~~~~la~~Ia~l~~~l~g~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg 328 (351)
T TIGR02707 267 KAKLILDAMAYQIAKEIGKMAVVLKGKVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPG 328 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCC
Confidence 3456777788888887777766554368999999999988766666665554 66666543
No 90
>PRK13329 pantothenate kinase; Reviewed
Probab=75.02 E-value=18 Score=29.72 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355 96 DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL 160 (204)
Q Consensus 96 ~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~ 160 (204)
.+|...|...++.|++..+...++.+++..+.+ -.|+++||.++ +++..+..++.+-+
T Consensus 176 ~~T~~ai~sG~~~g~~~~I~~~i~~~~~~~~~~-~~vilTGGda~------~l~~~l~~~~~~~~ 233 (249)
T PRK13329 176 TNTSDALTSGGTQAIAGAVERMFRHLAQHCGAE-PECLLTGGAAW------KLAPSLTVPFELVD 233 (249)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCHH------HHHhhcCCCCEECC
Confidence 467788889999999999999999998765433 36999999854 45666666665543
No 91
>KOG2708|consensus
Probab=73.24 E-value=51 Score=27.16 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=77.2
Q ss_pred cceEEecch--hhchhHHHHHHHHhcCCCCC----HHHHHHHHHhcCCCCCeEEecCC-CCCCCCCCCCCCcEEEEc---
Q psy9355 23 PVVYALEGS--VAVAGAAMNWLRDNVGMVTG----VEEIESLAESHRHTGDVYFVPAF-SGLYAPYWQPDARGIICG--- 92 (204)
Q Consensus 23 p~~y~~~g~--~~~~G~~~~W~~~~~~~~~~----~~~l~~~a~~~~~~~g~~~~P~l-~G~r~P~~~~~~~g~~~G--- 92 (204)
..+|-+.|- -..-|+.++-|.+.+.+..+ | .++++|++. ...+=+||. .|. |-..+|.+.+
T Consensus 143 e~rYrIFGETlDIAvGNClDRFAR~lklsN~PsPGy-nieq~AK~g---k~~ieLPY~VKGM-----DvSfSGiLs~ie~ 213 (336)
T KOG2708|consen 143 EKRYRIFGETLDIAVGNCLDRFARVLKLSNDPSPGY-NIEQLAKKG---KNYIELPYTVKGM-----DVSFSGILSYIED 213 (336)
T ss_pred cceeeeecceehhhhhhhHHHHHHHhcCCCCCCCCc-CHHHHHHhc---cceeecceeeecc-----ccchHHHHHHHHH
Confidence 355665554 23568899999888775322 2 367777653 236668885 233 2222332211
Q ss_pred -------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhC
Q psy9355 93 -------ITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCG 153 (204)
Q Consensus 93 -------l~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g 153 (204)
.+...+++|+..++-|-+.-.+.++.|..-. ...-+.+.+.||.--|..+.+|.|.+..
T Consensus 214 ~a~~~~~~~~~~t~~DLCySLQEtvFamLVEiTERAMA--h~~s~evLIVGGVGCN~RLQeMM~~Mc~ 279 (336)
T KOG2708|consen 214 LAEELLKPSSEVTKEDLCYSLQETVFAMLVEITERAMA--HCGSKEVLIVGGVGCNERLQEMMAIMCS 279 (336)
T ss_pred HHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCcEEEEecccccHHHHHHHHHHHH
Confidence 1223489999999999887667777665433 3456789999999999888888887653
No 92
>PRK13321 pantothenate kinase; Reviewed
Probab=72.42 E-value=10 Score=31.11 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccc
Q psy9355 97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA 140 (204)
Q Consensus 97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~ 140 (204)
+|...+-..++.|.+..+...++.+++..+.+ -.|+++||-++
T Consensus 184 ~T~~ai~~G~~~~~~~~i~~~i~~~~~~~~~~-~~vi~TGG~a~ 226 (256)
T PRK13321 184 STVSSIQSGLYYGYAGLVEGIVARIKAELGGP-PRVIATGGFAS 226 (256)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCcHH
Confidence 46777888899999999999999998876543 46999999754
No 93
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=72.39 E-value=23 Score=29.33 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=70.6
Q ss_pred cceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCC--CCCCCCCCcEEEEc-----CC-
Q psy9355 23 PVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLY--APYWQPDARGIICG-----IT- 94 (204)
Q Consensus 23 p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r--~P~~~~~~~g~~~G-----l~- 94 (204)
|..+--.|++..+|+.+-=+...+-...+|++|-++++.-....-=+..-+..|.- -|.-..++.++-+| ..
T Consensus 164 psqf~RvGGsslGGGtlwGLlsLlt~a~~ydqmld~aq~GDn~svDmlVgdIYg~dy~~~glks~~iAssFGkVf~~r~k 243 (342)
T COG5146 164 PSQFERVGGSSLGGGTLWGLLSLLTQATDYDQMLDMAQHGDNNSVDMLVGDIYGDDYEEPGLKSDLIASSFGKVFHHRDK 243 (342)
T ss_pred cchhccccccccCcchHHHHHHHHcccccHHHHHHHHhcCCCccceeeehhhccCccccCCCCchhhHHHHHHHHHhhcC
Confidence 56665556676777766556555555678999999987643221113334444532 12112222222222 21
Q ss_pred -C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHH
Q psy9355 95 -E-DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQ 146 (204)
Q Consensus 95 -~-~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Q 146 (204)
+ +.++.++.++++-.|.-.+-++.=...+ -.+.+.|+..|.-.||.+..-
T Consensus 244 ~le~F~p~di~~sll~aisnnigqiAyl~A~--~~n~qNIyfgGSf~rnhl~tm 295 (342)
T COG5146 244 PLEEFTPSDILASLLGAISNNIGQIAYLVAR--EFNTQNIYFGGSFHRNHLLTM 295 (342)
T ss_pred chhhcCcHHHHHHHHHHHhcchhhhHHHHHH--hhccceEEEeeeeccchhhhh
Confidence 1 2578889999998887777665432222 246788998887778876543
No 94
>PRK13326 pantothenate kinase; Reviewed
Probab=71.48 E-value=21 Score=29.61 Aligned_cols=57 Identities=14% Similarity=0.228 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355 97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL 160 (204)
Q Consensus 97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~ 160 (204)
+|...|-..++-|.+..+..+++.+++..+.+ -.|+++||-+ ++++..+..+..+-+
T Consensus 186 nT~~aI~sGi~~g~~~~I~g~i~~~~~e~~~~-~~vv~TGG~a------~~l~~~~~~~~~~~~ 242 (262)
T PRK13326 186 STSDSVNSGVIYQYKYLIEGVYHDLKRNYDRE-FNLIITGGNS------NLILPLISVDFIFNL 242 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCH------HHHHhhCCCCcEECc
Confidence 46777888999999999999999998876533 3699999965 445566666665543
No 95
>PRK13327 pantothenate kinase; Reviewed
Probab=71.36 E-value=12 Score=30.74 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccc
Q psy9355 96 DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA 140 (204)
Q Consensus 96 ~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~ 140 (204)
.+|...|...++-|++..+...++.+++..+.+ -+|+++||.++
T Consensus 169 ~~T~~ai~sG~~~~~~~~I~~~i~~~~~~~~~~-~~vilTGG~A~ 212 (242)
T PRK13327 169 NDTDDALTSGCDGAAVALIERSLQHAHRSLGQP-VRLLVHGGGAP 212 (242)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCHH
Confidence 457778888999999999999998888765533 36999999864
No 96
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=71.12 E-value=11 Score=33.44 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 100 GHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 100 ~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
.++++|=+|-+..-++.-++..... ......|+++||+++-+-...+..++|++||++...
T Consensus 293 s~II~aR~~Ei~~lV~~~l~~~g~~-~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P 353 (418)
T COG0849 293 SEIIEARVEEILELVKAELRKSGLP-NHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVP 353 (418)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCcc-ccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCC
Confidence 3455555555555444433332110 224578999999999999999999999999997655
No 97
>KOG2707|consensus
Probab=70.77 E-value=17 Score=31.54 Aligned_cols=62 Identities=10% Similarity=0.111 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEecc
Q psy9355 98 TRGHIVRAALEAICFQT----RDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNL 160 (204)
Q Consensus 98 ~~~~l~rAvlEgia~~~----~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~ 160 (204)
+.++++..+.+.++..+ ...++.+.. ....++.++++||.++|.++...+-+.. |.....|.
T Consensus 272 ~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~l-~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~t~i~Pp 340 (405)
T KOG2707|consen 272 EIADFAASLQRTVFRHISSKTHRAIKSLLL-QPKNVKQLVISGGVASNQYIRGALEKLSAAHNCTSIKPP 340 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccCCceEEEcCCccchHHHHHHHHHHHHhhCCccccCC
Confidence 56677777777665544 344444432 3456788999999999999888776654 44444444
No 98
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=70.52 E-value=9.7 Score=31.96 Aligned_cols=65 Identities=11% Similarity=-0.010 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
.+.+++.+++++-+...+.+.++.+....+...+...+.+.|.-.+++..-+|+.+|.+.++++.
T Consensus 207 ~~~~~~A~~i~~~~~~~m~~~i~~~~~~~g~~~~~~~lv~~GG~g~~~~~~la~~lg~~~v~~p~ 271 (290)
T PF01968_consen 207 LSVEEAAEGIVRIANENMADAIREVSVERGYDPRDFPLVAFGGAGPLHAPELAEELGIPRVVPPH 271 (290)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHT--EEEE-----------------------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccccccccccccccccccccccccccccc
Confidence 45788888888888888888888774444666665444443334478999999999998766554
No 99
>PRK13322 pantothenate kinase; Reviewed
Probab=70.50 E-value=12 Score=30.62 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccc
Q psy9355 96 DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA 140 (204)
Q Consensus 96 ~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~ 140 (204)
.+|...|...++.|++..+...++.+++..+.+ -.|+++||.++
T Consensus 175 ~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~-~~vilTGG~a~ 218 (246)
T PRK13322 175 RNTVDAVERGCLLMLRGFIESQLEQARELWGPD-FEIFLTGGDAP 218 (246)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCHH
Confidence 356777888999999999999999988765533 36999999864
No 100
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=70.17 E-value=13 Score=30.33 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcccc
Q psy9355 97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTAN 141 (204)
Q Consensus 97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s 141 (204)
+|.+.|-..++.|.+..+...++.+++..+.+ -.|+++||-++.
T Consensus 176 ~T~~ai~sG~~~g~~~~i~~~i~~~~~~~~~~-~~vi~TGG~a~~ 219 (243)
T TIGR00671 176 STREAVQSGAVYGVLGLIQGLLKDWKKYFKRK-FAVVITGGDGKY 219 (243)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCchHh
Confidence 56788889999999999999999998765533 369999998765
No 101
>PRK13328 pantothenate kinase; Reviewed
Probab=68.74 E-value=14 Score=30.49 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEec
Q psy9355 96 DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKN 159 (204)
Q Consensus 96 ~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~ 159 (204)
.+|...|-..++-|++-.+...++.+++..+.+ -.|+++||.++ +++..+..+..+-
T Consensus 183 ~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~-~~vi~TGGda~------~l~~~l~~~~~~~ 239 (255)
T PRK13328 183 DDTPDAISAGCLAAQAGLIERAWRDLAARWQAP-VRLVLSGGAAD------AVAPALTVPHTRH 239 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCHH------HHHhhCCCCCEEC
Confidence 457778888999999999999999988765533 46899999854 4555566665543
No 102
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=68.24 E-value=6.3 Score=36.04 Aligned_cols=55 Identities=16% Similarity=0.092 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHH-HHHHhhhCCcEEeccC
Q psy9355 102 IVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLM-QTQADLCGIPVGKNLT 161 (204)
Q Consensus 102 l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~-Qi~Adv~g~pv~~~~~ 161 (204)
-+++.+|.+..++...+. +.+| ..+|.++||.+.|-.|+ +++.......|.|++.
T Consensus 264 saQ~~lE~l~l~~~~~~~---~~~g--~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa 319 (555)
T COG2192 264 SAQAYLEELVLEMLRYLR---EETG--EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPA 319 (555)
T ss_pred HHHHHHHHHHHHHHHHHH---HHhC--ccceEEccceeeeeeehHhHhhcccCceeEecCC
Confidence 446889999887766543 3334 67899999999999999 9999999999988775
No 103
>PRK13331 pantothenate kinase; Reviewed
Probab=67.99 E-value=14 Score=30.48 Aligned_cols=42 Identities=21% Similarity=0.148 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccc
Q psy9355 97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA 140 (204)
Q Consensus 97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~ 140 (204)
+|...|-..++-|.+..+..+++.+++..+ --.|+++||.++
T Consensus 174 nT~~ai~sGi~~g~~g~i~~~i~~~~~~~~--~~~vi~TGG~a~ 215 (251)
T PRK13331 174 NTQEAIQSGVIYTILAGLRDFIEDWLSLFP--DGKIVLTGGDGE 215 (251)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEECCCHH
Confidence 477788889999999999999999988765 346999999753
No 104
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=67.80 E-value=12 Score=30.40 Aligned_cols=49 Identities=20% Similarity=0.267 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCc-cccHHHHHHHHhhhCC
Q psy9355 105 AALEAICFQTRDILEAMKKDCGIQLIKLQVDGGM-TANKHLMQTQADLCGI 154 (204)
Q Consensus 105 AvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGg-a~s~~~~Qi~Adv~g~ 154 (204)
|.+--.-...++++|.|++ -|.+.+-++..||. ..+++|-|+=||+...
T Consensus 163 alMTttm~~~~~viE~L~e-eGiRd~v~v~vGGApvtq~~a~~iGAD~~~~ 212 (227)
T COG5012 163 ALMTTTMIGMKDVIELLKE-EGIRDKVIVMVGGAPVTQDWADKIGADAYAE 212 (227)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCccCeEEeecCccccHHHHHHhCCCccCc
Confidence 3444445668999999987 48877766666776 4678888886666543
No 105
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=67.49 E-value=17 Score=30.92 Aligned_cols=79 Identities=20% Similarity=0.231 Sum_probs=47.7
Q ss_pred CCCCCC--CCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEE--EecCccc---cHHH---H
Q psy9355 76 GLYAPY--WQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQ--VDGGMTA---NKHL---M 145 (204)
Q Consensus 76 G~r~P~--~~~~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~--~~GGga~---s~~~---~ 145 (204)
|.-.|+ .|+...-.++.+..+|+-++++-. .+++--+.+.+..-...+++. +.|||++ +.+| +
T Consensus 134 gk~~PyGiyd~~~n~g~v~vg~s~dTa~Fav~-------~i~~WW~~~g~~~yp~a~~lli~~D~GgsN~~r~r~wk~~L 206 (311)
T PF07592_consen 134 GKAIPYGIYDPAANEGWVSVGTSHDTADFAVD-------SIRRWWEEMGKARYPHAKRLLITADNGGSNGSRRRLWKKRL 206 (311)
T ss_pred ceeccceeEeccCCeEEEEEecCcccHHHHHH-------HHHHHHHHhChhhcCchheEEEeccCCCCccchhHHHHHHH
Confidence 344454 355566667777777777777533 234444555221122355554 4478774 4566 4
Q ss_pred HHHHhhhCCcEEeccC
Q psy9355 146 QTQADLCGIPVGKNLT 161 (204)
Q Consensus 146 Qi~Adv~g~pv~~~~~ 161 (204)
|-+||-+|++|.+.-.
T Consensus 207 ~~la~~~gl~I~v~hy 222 (311)
T PF07592_consen 207 QELADETGLSIRVCHY 222 (311)
T ss_pred HHHHHHhCCEEEEEEc
Confidence 7789999999988664
No 106
>PRK13318 pantothenate kinase; Reviewed
Probab=66.82 E-value=15 Score=30.10 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccc
Q psy9355 97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA 140 (204)
Q Consensus 97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~ 140 (204)
+|...+-..++.|.+..+...++.+++..+.+ -+|+++||.++
T Consensus 184 ~T~~ai~~G~~~~~~~~i~~~~~~~~~~~~~~-~~vi~TGG~a~ 226 (258)
T PRK13318 184 NTVEAMQSGIYYGYVGLVEGIVKRIKEELGKD-PKVIATGGLAP 226 (258)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCchH
Confidence 46777888999999999999999998765533 46999999865
No 107
>PRK12397 propionate kinase; Reviewed
Probab=65.38 E-value=32 Score=30.49 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccc-cHHHHHHHHhh
Q psy9355 104 RAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA-NKHLMQTQADL 151 (204)
Q Consensus 104 rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~-s~~~~Qi~Adv 151 (204)
+-++|..+|+++..+-.+-...| .++-|+.+||... +...++.+.+-
T Consensus 298 ~lA~d~f~yri~k~IGa~~a~lg-gvDaiVFTGGIGEns~~vR~~ic~~ 345 (404)
T PRK12397 298 KLALTLFAERIRATIGSYIMQMG-GLDALVFTGGIGENSARARSAVCHN 345 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCchhhCCHHHHHHHHhh
Confidence 34888999999999988876555 6899999999994 55555555443
No 108
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=63.67 E-value=15 Score=32.24 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccc-cHHHHHHHHhhhC-CcEEe
Q psy9355 103 VRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA-NKHLMQTQADLCG-IPVGK 158 (204)
Q Consensus 103 ~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~-s~~~~Qi~Adv~g-~pv~~ 158 (204)
++-++|..+|+++..+-.+-..+.-.++.|+.+||... +++..+++.+.+. .+|.+
T Consensus 295 A~la~d~~~y~i~k~Ig~~~a~l~G~vDaivfTGGige~~~~vr~~~~~~l~~~gv~l 352 (388)
T PF00871_consen 295 AKLALDAFAYQIAKYIGAYAAVLEGGVDAIVFTGGIGENSALVRERICRKLWFLGVKL 352 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSS-SEEEEEHHHHHHTHHHHHHHHCTGGGGTB-B
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEccccccchHHHHHHHHhhcCcCCeEe
Confidence 45678999999999998887766447899999999996 5677788777655 44444
No 109
>PRK13320 pantothenate kinase; Reviewed
Probab=62.15 E-value=46 Score=27.19 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEe
Q psy9355 97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158 (204)
Q Consensus 97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~ 158 (204)
+|.+.|-..++-|.+..+...++.+++..+ + -.|+++||.++ ++++.+..++.+
T Consensus 174 ~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~-~-~~vi~TGG~a~------~l~~~l~~~~~~ 227 (244)
T PRK13320 174 STEECIRSGVVWGCVAEIEGLIEAYKSKLP-E-LLVILTGGDAP------FLASRLKNTIFA 227 (244)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C-CEEEEECCCHH------HHHHhcCCccEE
Confidence 467778888888888888888888887655 3 47999999854 455556666554
No 110
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=57.03 E-value=31 Score=27.46 Aligned_cols=62 Identities=19% Similarity=0.183 Sum_probs=47.1
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcc--ccHHHHHHHHhhhCCcEEeccC
Q psy9355 91 CGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMT--ANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 91 ~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga--~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
.-++..-+++|+ ..++..-+..++..|+.++.|++.++.. |+|-....+|.-+|+.|..|..
T Consensus 167 VEItS~ikrgDl---------~~i~rk~elYer~~gvki~~vivitpFihdr~p~~~kAmAe~mGIeii~p~~ 230 (231)
T COG5493 167 VEITSAIKRGDL---------PVIRRKKELYERAKGVKINKVIVITPFIHDRYPDRVKAMAERMGIEIIPPEE 230 (231)
T ss_pred EEehhhhhccch---------HHHHHHHHHHHHhcCCccceEEEEcccccccChHHHHHHHHHcCceecCCCC
Confidence 444444455555 4566676777777799999999999987 7899999999999999876653
No 111
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=56.05 E-value=37 Score=28.05 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccc
Q psy9355 96 DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA 140 (204)
Q Consensus 96 ~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~ 140 (204)
.+|.+.+-.+++-|.++.++..++++++..+ .-.+++++||.++
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~-~~~~~vltGg~~~ 224 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELK-GGDAVVLTGGLAK 224 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhC-CCCeEEEeCCchH
Confidence 3578889999999999999999999988644 4567999999875
No 112
>PRK13324 pantothenate kinase; Reviewed
Probab=55.64 E-value=34 Score=28.28 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccc
Q psy9355 97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA 140 (204)
Q Consensus 97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~ 140 (204)
+|...|-..++-|.+..+...++.+++..+.+ -+|+++||.++
T Consensus 184 nT~~ai~sG~~~g~~~~i~~~~~~~~~~~~~~-~~vi~TGG~a~ 226 (258)
T PRK13324 184 DTKTNIRSGLYYGHLGALKELKRRSVEEFGSP-VYTIATGGFAG 226 (258)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCChH
Confidence 35666777888888888888888887765533 35899999863
No 113
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=53.22 E-value=27 Score=28.91 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCcceEEEecCc--cccHHHHHHHHhhhCCcEEeccC
Q psy9355 116 DILEAMKKDCGIQLIKLQVDGGM--TANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 116 ~~~e~l~~~~g~~~~~I~~~GGg--a~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
++.+.++..... .+-|+++||. +..++-.|.+|..+|+|++.-+.
T Consensus 49 ~I~~~l~~a~~r-~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv~~~~ 95 (255)
T COG1058 49 RIVEALREASER-ADVVITTGGLGPTHDDLTAEAVAKALGRPLVLDEE 95 (255)
T ss_pred HHHHHHHHHHhC-CCEEEECCCcCCCccHhHHHHHHHHhCCCcccCHH
Confidence 333444433233 7889999976 57899999999999999987554
No 114
>PRK05905 hypothetical protein; Provisional
Probab=49.53 E-value=29 Score=28.73 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=37.0
Q ss_pred CCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEe
Q psy9355 21 DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFV 71 (204)
Q Consensus 21 ~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~ 71 (204)
++|-.=-++|++.+++.++.|+-+.+++ +.+++.+++.++ |++-++|+
T Consensus 94 ~IP~~aGLGggSSDAAa~L~~Ln~l~~l--s~~~L~~ia~~l-GADVPFfl 141 (258)
T PRK05905 94 RIPIGSGLGSGSSNAAVLMKWILEFEGI--NEINYKDVVNKL-GSDIPFFL 141 (258)
T ss_pred CCCCcCCCCCCchHHHHHHHHHHHHhCC--CHHHHHHHHHHh-CCCcceEE
Confidence 4566667889999999999999887764 577888888766 67755655
No 115
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=48.59 E-value=45 Score=26.98 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC
Q psy9355 102 IVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG 162 (204)
Q Consensus 102 l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~ 162 (204)
.++-|+|-+|--.+.++| +.+++.+++.||.+.-+-.-.++-.-++++|..|...
T Consensus 206 ~v~PV~eKMAeIv~~hie------~~~i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~P~~p 260 (277)
T COG4820 206 VVKPVYEKMAEIVARHIE------GQGITDLWLVGGACMQPGVEELFEKQLALQVHLPQHP 260 (277)
T ss_pred chhHHHHHHHHHHHHHhc------cCCCcceEEecccccCccHHHHHHHHhccccccCCCc
Confidence 457888888877777664 4567889999999988777888888889999888763
No 116
>KOG0680|consensus
Probab=47.63 E-value=21 Score=30.77 Aligned_cols=45 Identities=18% Similarity=0.038 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh
Q psy9355 105 AALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC 152 (204)
Q Consensus 105 AvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~ 152 (204)
.|-|+|+.++..+=|.++..+ ...|+++||-++-|-+.|.++.=+
T Consensus 297 GIpEAV~esl~~~Pe~~~p~l---~~NIv~iGGn~~fPgF~~RL~~El 341 (400)
T KOG0680|consen 297 GIPEAVLESLSMLPEEVRPLL---LENIVCIGGNSNFPGFRQRLAREL 341 (400)
T ss_pred CchHHHHHHHHhCHHHHHHHH---HhcEEEecCccCCcchHHHHHHHH
Confidence 455555556666666665532 578999999999988888877543
No 117
>KOG2853|consensus
Probab=47.56 E-value=61 Score=28.49 Aligned_cols=72 Identities=10% Similarity=0.133 Sum_probs=48.7
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh---c-CCCc----------------ceEEEe-cCcc--ccHHHHH
Q psy9355 90 ICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD---C-GIQL----------------IKLQVD-GGMT--ANKHLMQ 146 (204)
Q Consensus 90 ~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~---~-g~~~----------------~~I~~~-GGga--~s~~~~Q 146 (204)
+.+.+-.-...+.+|-++.++.|.+|+.-+...+. + ..++ -.|+++ ||++ ...+|++
T Consensus 27 ~~~~d~~g~~~~~ikr~lr~l~~d~R~~k~~f~~~~p~t~~~Pi~~~~~~~~~~~~f~~~~dVvIIGGG~~GsS~AfWLK 106 (509)
T KOG2853|consen 27 FENEDHFGPGEDVIKRVLRLLSYDFRRWKRLFQEADPFTRRLPIAHMKHGTLDNEVFPYHCDVVIIGGGGSGSSTAFWLK 106 (509)
T ss_pred ccccCcCCCchHHHHHHHHhccchHHHHHHhhcccccccccCCCcccccccccccccccccCEEEECCCccchhhHHHHH
Confidence 44555444567888999999999998887665410 0 1222 124444 4544 4689999
Q ss_pred HHHhhhCCcEEeccC
Q psy9355 147 TQADLCGIPVGKNLT 161 (204)
Q Consensus 147 i~Adv~g~pv~~~~~ 161 (204)
-+|.-.|..|.+.+.
T Consensus 107 er~rd~gl~VvVVEr 121 (509)
T KOG2853|consen 107 ERARDEGLNVVVVER 121 (509)
T ss_pred HHhhcCCceEEEEec
Confidence 999999999988775
No 118
>PLN02666 5-oxoprolinase
Probab=44.45 E-value=1.3e+02 Score=30.94 Aligned_cols=64 Identities=11% Similarity=0.014 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcce--EEEecCccccHHHHHHHHhhhCCc-EEeccCC
Q psy9355 97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIK--LQVDGGMTANKHLMQTQADLCGIP-VGKNLTG 162 (204)
Q Consensus 97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~--I~~~GGga~s~~~~Qi~Adv~g~p-v~~~~~~ 162 (204)
.+.++.+.+|++-..-.+...+..+....|.+++. +++.||. -++..-.+|+.+|++ |.+|...
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~~l~afGGa--gp~ha~~lA~~lgi~~vivP~~~ 520 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANHALACFGGA--GPQHACAIARALGMSEVFVHRYC 520 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceEEEecCc--HHHHHHHHHHHcCCCEEEeCCCc
Confidence 35677777777777777777777665556777754 4444443 467888899999999 8888764
No 119
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=44.28 E-value=52 Score=30.56 Aligned_cols=63 Identities=17% Similarity=0.279 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHHHHHH----HH-HHHHHhcCC---CcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 98 TRGHIVRAALEAICFQTRD----IL-EAMKKDCGI---QLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 98 ~~~~l~rAvlEgia~~~~~----~~-e~l~~~~g~---~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
-..+|.|+-+|.+...+-. .. ..+.+ .+. +++.|.+.||.+|-|...+.+++.++++.....+
T Consensus 272 ~~~~ltR~~~E~l~~dll~r~~~~~~~al~~-a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~in 342 (579)
T COG0443 272 LLKELTRAKFEELILDLLERTIEPVEQALKD-AGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSIN 342 (579)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCC
Confidence 3445666666655433221 11 22222 343 5788999999999999999999999977765444
No 120
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=43.80 E-value=55 Score=27.43 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=41.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHhcCCCcc--eEEEecCccccHHHHHHHH
Q psy9355 78 YAPYWQPDARGIICGITEDTTRGHIV------RAALEAICFQTRDILEAMKKDCGIQLI--KLQVDGGMTANKHLMQTQA 149 (204)
Q Consensus 78 r~P~~~~~~~g~~~Gl~~~~~~~~l~------rAvlEgia~~~~~~~e~l~~~~g~~~~--~I~~~GGga~s~~~~Qi~A 149 (204)
-+|+|+|..|. +.|++..- .+.+ ...++-+---+...+..+++. |+..= -|=++||.-||-.+.+-+|
T Consensus 190 PNP~y~peLRp-~tG~d~~V--~dYv~~~~e~~ef~~~l~~~l~~~LP~y~~e-gks~lTIaIGCTGGqHRSV~iae~La 265 (286)
T COG1660 190 PNPHYDPELRP-LTGLDKPV--ADYVMSQPEVEEFYEKLRDLLEFWLPRYEKE-GKSYLTIAIGCTGGQHRSVYIAEQLA 265 (286)
T ss_pred CCCccccccCc-CCCCChhH--HHHHHcChHHHHHHHHHHHHHHHHhHHHHhc-CCeEEEEEEccCCCccchHHHHHHHH
Confidence 37999999874 56766331 1111 122222222233344455553 44322 2446788899999998888
Q ss_pred hhhCC
Q psy9355 150 DLCGI 154 (204)
Q Consensus 150 dv~g~ 154 (204)
+.+.-
T Consensus 266 ~~l~~ 270 (286)
T COG1660 266 EYLRA 270 (286)
T ss_pred HHHHh
Confidence 87765
No 121
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=43.62 E-value=96 Score=27.16 Aligned_cols=56 Identities=16% Similarity=0.039 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEe
Q psy9355 97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158 (204)
Q Consensus 97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~ 158 (204)
.+...+++.+..|+...+...+..+++ .+.+++.|+.+||.. .-+.|-..++|+.+
T Consensus 63 ~~~~~~~~~~~~gl~~~~~~~~~~~~~-~~~~p~~v~~~Gg~v-----~~~aA~~~~~p~~~ 118 (396)
T TIGR03492 63 QSLRGLLRDLRAGLVGLTLGQWRALRK-WAKKGDLIVAVGDIV-----PLLFAWLSGKPYAF 118 (396)
T ss_pred CCHHHHHHHHHhhHHHHHHHHHHHHHH-HhhcCCEEEEECcHH-----HHHHHHHcCCCceE
Confidence 356688999999999999999999987 455789999999998 56777889999988
No 122
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=42.79 E-value=31 Score=29.13 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=14.5
Q ss_pred CcceEEEe-cCccccHHHH
Q psy9355 128 QLIKLQVD-GGMTANKHLM 145 (204)
Q Consensus 128 ~~~~I~~~-GGga~s~~~~ 145 (204)
+++-|+++ ||||..++|+
T Consensus 75 ~~Dviii~RGGGs~eDL~~ 93 (319)
T PF02601_consen 75 DFDVIIIIRGGGSIEDLWA 93 (319)
T ss_pred cccEEEEecCCCChHHhcc
Confidence 56766666 9999999997
No 123
>PRK03670 competence damage-inducible protein A; Provisional
Probab=42.21 E-value=35 Score=28.17 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=26.9
Q ss_pred cceEEEecCcc--ccHHHHHHHHhhhCCcEEeccC
Q psy9355 129 LIKLQVDGGMT--ANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 129 ~~~I~~~GGga--~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
.+-|+++||.. ..++..+.+|..+|+|+..-+.
T Consensus 61 ~DlVIttGGlGpt~dD~T~eava~a~g~~l~~~~e 95 (252)
T PRK03670 61 PEVLVISGGLGPTHDDVTMLAVAEALGRELVLCED 95 (252)
T ss_pred CCEEEECCCccCCCCCchHHHHHHHhCCCCcCCHH
Confidence 46788888754 6899999999999999876544
No 124
>PRK03673 hypothetical protein; Provisional
Probab=41.37 E-value=49 Score=29.27 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=28.3
Q ss_pred CcceEEEecCcc--ccHHHHHHHHhhhCCcEEeccC
Q psy9355 128 QLIKLQVDGGMT--ANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 128 ~~~~I~~~GGga--~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
..+-|+++||.. ..++..+..|+.+|+|++.-+.
T Consensus 60 ~~DlVI~tGGlGpt~dD~t~~avA~a~g~~L~~d~e 95 (396)
T PRK03673 60 HADVLIVNGGLGPTSDDLSALAAATAAGEGLVLHEE 95 (396)
T ss_pred cCCEEEEcCCCCCCCcccHHHHHHHHcCCCceeCHH
Confidence 356789999876 6799999999999999987553
No 125
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=39.46 E-value=47 Score=25.51 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=26.7
Q ss_pred cceEEEecCcc--ccHHHHHHHHhhhCCcEEeccC
Q psy9355 129 LIKLQVDGGMT--ANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 129 ~~~I~~~GGga--~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
.+-|+++||.. ..+...+.+++++|+++..-+.
T Consensus 59 ~dlVIttGG~G~t~~D~t~ea~~~~~~~~l~~~~e 93 (170)
T cd00885 59 ADLVITTGGLGPTHDDLTREAVAKAFGRPLVLDEE 93 (170)
T ss_pred CCEEEECCCCCCCCCChHHHHHHHHhCCCcccCHH
Confidence 46688888765 5799999999999999976443
No 126
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=39.37 E-value=18 Score=31.18 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=21.3
Q ss_pred cceEEEecCccccHHHHHHHHhhhC
Q psy9355 129 LIKLQVDGGMTANKHLMQTQADLCG 153 (204)
Q Consensus 129 ~~~I~~~GGga~s~~~~Qi~Adv~g 153 (204)
.++|+++||+|+-+-+.+.+.+-++
T Consensus 290 ~~~Ivl~GG~s~~~gl~~rl~~el~ 314 (371)
T cd00012 290 YSNIVLSGGSTLFPGFGERLQKELL 314 (371)
T ss_pred HhCEEEeCCccCCcCHHHHHHHHHH
Confidence 5679999999998888888887776
No 127
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.81 E-value=77 Score=27.56 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=33.8
Q ss_pred ceEEEec-CccccHHHHHHHHhhhCCcEEeccCCCccccccc-CCHHHHHHHh
Q psy9355 130 IKLQVDG-GMTANKHLMQTQADLCGIPVGKNLTGGKDGGKYI-TDVSNASRTM 180 (204)
Q Consensus 130 ~~I~~~G-Gga~s~~~~Qi~Adv~g~pv~~~~~~~a~g~g~~-~~~~~a~~~~ 180 (204)
.+|.+.| -||--.++.|-+|.++++|..+.+..+---+|+. .|.++..-++
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkL 150 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKL 150 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHH
Confidence 4677777 5667789999999999999998776432222222 3454444444
No 128
>KOG0101|consensus
Probab=38.10 E-value=72 Score=29.94 Aligned_cols=52 Identities=17% Similarity=0.151 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcE
Q psy9355 100 GHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156 (204)
Q Consensus 100 ~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv 156 (204)
.+++|..+|-+.= .+....- -...+..|+++||.++-|...+++.|.++-..
T Consensus 311 ~dlf~~~~~~v~~----~L~da~~-dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~ 362 (620)
T KOG0101|consen 311 ADLFRSTLEPVEK----ALKDAKL-DKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKE 362 (620)
T ss_pred hHHHHHHHHHHHH----HHHhhcc-CccCCceeEEecCcccchHHHHHHHHHhcccc
Confidence 4677777776662 3322221 23468899999999999999999999998633
No 129
>KOG0745|consensus
Probab=37.36 E-value=78 Score=28.69 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=35.1
Q ss_pred ceEEEec-CccccHHHHHHHHhhhCCcEEeccCCCccccccc-CCHHHHHHHhh
Q psy9355 130 IKLQVDG-GMTANKHLMQTQADLCGIPVGKNLTGGKDGGKYI-TDVSNASRTML 181 (204)
Q Consensus 130 ~~I~~~G-Gga~s~~~~Qi~Adv~g~pv~~~~~~~a~g~g~~-~~~~~a~~~~~ 181 (204)
.+|++.| -|+--.++.|-+|.++++|+.+.+..+---+|+. .|++..+.++.
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl 280 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLL 280 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHH
Confidence 3466665 5667789999999999999999887543223332 45555555443
No 130
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=36.74 E-value=57 Score=27.99 Aligned_cols=47 Identities=15% Similarity=0.078 Sum_probs=29.7
Q ss_pred ceEEEecCccccHHHHHHHHhhh------CCcEEeccC-----CCcccccccCCHHHH
Q psy9355 130 IKLQVDGGMTANKHLMQTQADLC------GIPVGKNLT-----GGKDGGKYITDVSNA 176 (204)
Q Consensus 130 ~~I~~~GGga~s~~~~Qi~Adv~------g~pv~~~~~-----~~a~g~g~~~~~~~a 176 (204)
++|+++||.|+-+-+.+.+.+-+ +.+|.+... .+-.|+.++.++...
T Consensus 293 ~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~~~f 350 (373)
T smart00268 293 ENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASLSTF 350 (373)
T ss_pred hCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCccch
Confidence 56999999998777777666655 444544322 133566666666543
No 131
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=36.17 E-value=62 Score=27.35 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=40.6
Q ss_pred eeeecC-CCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEec
Q psy9355 15 VAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVP 72 (204)
Q Consensus 15 ~~~~~~-~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P 72 (204)
+...+. ++|-.=-++|++++++.++.-+.+.++..-+.++|.+++.+. |++-++|+-
T Consensus 86 v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~L-GaDVPffl~ 143 (289)
T COG1947 86 VSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRL-GADVPFFLS 143 (289)
T ss_pred eeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh-CCCcCeeee
Confidence 334443 456666688999999999999988877655678888888766 566555543
No 132
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=35.27 E-value=1e+02 Score=26.42 Aligned_cols=44 Identities=16% Similarity=-0.025 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC
Q psy9355 115 RDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG 162 (204)
Q Consensus 115 ~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~ 162 (204)
.+.++.+++ ...+-|+..|||+-.+. .+.+|...++|+...+..
T Consensus 67 ~~~~~~~~~---~~~d~IIavGGGs~~D~-aK~ia~~~~~p~i~VPTt 110 (349)
T cd08550 67 VKALCGAEE---QEADVIIGVGGGKTLDT-AKAVADRLDKPIVIVPTI 110 (349)
T ss_pred HHHHHHHHh---cCCCEEEEecCcHHHHH-HHHHHHHcCCCEEEeCCc
Confidence 344444443 25688999999998876 678888899999866653
No 133
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=34.43 E-value=97 Score=28.92 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcceEEEecCccccHHHHHHHHhhhCCc
Q psy9355 96 DTTRGHIVRAALEAICFQTRDILEAMKKDCGI-QLIKLQVDGGMTANKHLMQTQADLCGIP 155 (204)
Q Consensus 96 ~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~-~~~~I~~~GGga~s~~~~Qi~Adv~g~p 155 (204)
.+|...|...++.|++-.+..+++.+++..+. +.-.|+++||.++ ++++.+..+
T Consensus 506 ~~T~~ai~sG~~~~~~g~v~~~~~~~~~~~~~~~~~~vilTGGda~------~l~~~l~~~ 560 (592)
T PRK13325 506 TTTGNAVASGMMDAVCGSVMMMHGRLKEKTGAGKPVDVIITGGGAA------KVAEALPPA 560 (592)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHH------HHHhhcccc
Confidence 45677788888888888888888888765542 2346999999853 445555543
No 134
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=33.91 E-value=69 Score=26.40 Aligned_cols=35 Identities=23% Similarity=-0.016 Sum_probs=26.2
Q ss_pred CCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC
Q psy9355 127 IQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG 162 (204)
Q Consensus 127 ~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~ 162 (204)
.+.+-|+..|||+-+++ ++..|..+++|....+.+
T Consensus 74 ~~~d~ii~vGgG~i~D~-~K~~A~~~~~p~isVPTa 108 (250)
T PF13685_consen 74 KDADLIIGVGGGTIIDI-AKYAAFELGIPFISVPTA 108 (250)
T ss_dssp TT--EEEEEESHHHHHH-HHHHHHHHT--EEEEES-
T ss_pred cCCCEEEEeCCcHHHHH-HHHHHHhcCCCEEEeccc
Confidence 45678999999999987 799999999999876664
No 135
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=33.74 E-value=90 Score=26.81 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=22.4
Q ss_pred CCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 127 IQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 127 ~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
.++++|+++|||++- +...+.+.++.- .++++
T Consensus 290 ~~~d~IiL~GGGA~l--l~~~lk~~f~~~-~~~~~ 321 (344)
T PRK13917 290 NSFDRVIVTGGGANI--FFDSLSHWYSDV-EKADE 321 (344)
T ss_pred CCCCEEEEECCcHHH--HHHHHHHHcCCe-EEcCC
Confidence 367899999999964 557777777753 44443
No 136
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=33.71 E-value=1.1e+02 Score=26.15 Aligned_cols=33 Identities=24% Similarity=0.111 Sum_probs=26.9
Q ss_pred CcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
+.+.|+..|||+-.+. .+.+|..+++|+...+.
T Consensus 76 ~~D~iIavGGGs~~D~-aK~ia~~~~~p~i~VPT 108 (347)
T cd08172 76 GADVIIGIGGGKVLDT-AKAVADRLGVPVITVPT 108 (347)
T ss_pred CCCEEEEeCCcHHHHH-HHHHHHHhCCCEEEecC
Confidence 4678999999998876 68888888999875554
No 137
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=33.67 E-value=1e+02 Score=26.94 Aligned_cols=35 Identities=17% Similarity=-0.061 Sum_probs=28.8
Q ss_pred CCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC
Q psy9355 127 IQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG 162 (204)
Q Consensus 127 ~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~ 162 (204)
.+.+-|+..|||..-+. .+..|..+|+|+...+..
T Consensus 83 ~~~d~vIGVGGGk~iD~-aK~~A~~~~~pfIsvPT~ 117 (360)
T COG0371 83 DGADVVIGVGGGKTIDT-AKAAAYRLGLPFISVPTI 117 (360)
T ss_pred cCCCEEEEecCcHHHHH-HHHHHHHcCCCEEEecCc
Confidence 34678899999987765 899999999999877763
No 138
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=32.58 E-value=81 Score=26.01 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=37.2
Q ss_pred CCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEe
Q psy9355 21 DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFV 71 (204)
Q Consensus 21 ~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~ 71 (204)
++|-.=-++|++.++...+.++-+.++..-+.+++.+++.+. |++-++|+
T Consensus 94 ~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~l-GaDvPffl 143 (257)
T PRK04181 94 NIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKV-GADVAFFI 143 (257)
T ss_pred CCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh-CCCccEEe
Confidence 456666688888888889999988776544677888888766 67755554
No 139
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=31.75 E-value=1.3e+02 Score=25.96 Aligned_cols=44 Identities=16% Similarity=0.038 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355 117 ILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL 160 (204)
Q Consensus 117 ~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~ 160 (204)
.++.+++.++.+++.|.-.=-|--|.+..=+.|-.+|+||+=.+
T Consensus 84 a~e~~~~~~~k~v~ai~s~EiGG~Ns~ip~v~aa~~g~PvVD~D 127 (357)
T COG3535 84 AFEVLEDYLGKPVDAIISIEIGGINSLIPLVVAAQLGLPVVDGD 127 (357)
T ss_pred HHHHHHHHhCCceeEEEEeecCCcchhHHHHHHHhcCCceecCC
Confidence 34556666788998887764333445556678889999998655
No 140
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=30.05 E-value=68 Score=28.48 Aligned_cols=17 Identities=24% Similarity=0.100 Sum_probs=13.2
Q ss_pred cceEEEe-cCccccHHHH
Q psy9355 129 LIKLQVD-GGMTANKHLM 145 (204)
Q Consensus 129 ~~~I~~~-GGga~s~~~~ 145 (204)
++-|+++ ||||..++|.
T Consensus 193 ~Dviii~RGGGS~eDL~~ 210 (438)
T PRK00286 193 EDVLIVARGGGSLEDLWA 210 (438)
T ss_pred CCEEEEecCCCCHHHhhc
Confidence 5666666 9999999984
No 141
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=29.74 E-value=91 Score=25.96 Aligned_cols=48 Identities=25% Similarity=0.217 Sum_probs=36.0
Q ss_pred CCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEe
Q psy9355 21 DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFV 71 (204)
Q Consensus 21 ~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~ 71 (204)
++|-.=.++|++.++..++.++-+.+++ +.+++.+++.+. |++-++|+
T Consensus 92 ~IP~~aGLGggSs~aaa~L~~ln~l~~l--s~~~l~~ia~~l-GaDvPffl 139 (283)
T PRK14610 92 NIPVSAGLAGGSADAAAVIRLLGKLWGI--DEQILNELALSV-GSDVPACL 139 (283)
T ss_pred CCCCCCcCCccHHHHHHHHHHHHHHhCC--CHHHHHHHHHHh-CCCCcEEE
Confidence 4566666888888899999999887753 678888888766 56655554
No 142
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=29.26 E-value=2.1e+02 Score=24.14 Aligned_cols=33 Identities=6% Similarity=-0.057 Sum_probs=21.5
Q ss_pred CCcceEEEecCccccHHHHHHHHhhhCC-cEEeccC
Q psy9355 127 IQLIKLQVDGGMTANKHLMQTQADLCGI-PVGKNLT 161 (204)
Q Consensus 127 ~~~~~I~~~GGga~s~~~~Qi~Adv~g~-pv~~~~~ 161 (204)
.++++|+++|||+. ++...+.+.+.. .|.+.+.
T Consensus 272 ~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~d 305 (320)
T TIGR03739 272 ESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDE 305 (320)
T ss_pred CcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCC
Confidence 46889999999987 445555566664 3334433
No 143
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=28.67 E-value=1.4e+02 Score=25.70 Aligned_cols=42 Identities=19% Similarity=0.110 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 116 DILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 116 ~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
..++.+++ ...+-|+..|||+-.+. ...+|-..++|+...+.
T Consensus 75 ~~~~~~~~---~~~d~IIavGGGsv~D~-aK~iA~~~~~p~i~IPT 116 (366)
T PRK09423 75 RLVAIAEE---NGCDVVIGIGGGKTLDT-AKAVADYLGVPVVIVPT 116 (366)
T ss_pred HHHHHHHh---cCCCEEEEecChHHHHH-HHHHHHHcCCCEEEeCC
Confidence 34444443 24688999999998876 67778888999976555
No 144
>PF12523 DUF3725: Protein of unknown function (DUF3725); InterPro: IPR022199 This domain family is found in viruses, and is approximately 70 amino acids in length. The family is found in association with PF01577 from PFAM. There is a conserved FLE sequence motif.
Probab=28.63 E-value=89 Score=20.35 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9355 97 TTRGHIVRAALEAICFQTRDILEAMKKD 124 (204)
Q Consensus 97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~ 124 (204)
+.-+++.|+.+||-++.-+.++|.+++.
T Consensus 19 i~naE~gR~FLEg~~~~Ra~ifeivrkt 46 (74)
T PF12523_consen 19 IGNAEVGRTFLEGNRFRRADIFEIVRKT 46 (74)
T ss_pred hccHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 5667899999999999999999988763
No 145
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=28.62 E-value=1.1e+02 Score=27.14 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=27.9
Q ss_pred CcceEEEecCcc--ccHHHHHHHHhhhCCcEEeccC
Q psy9355 128 QLIKLQVDGGMT--ANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 128 ~~~~I~~~GGga--~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
..+-|+++||.+ ..++..+.+|..+|+|++.-+.
T Consensus 59 ~~DlVIttGGlgpt~dD~t~eava~~~g~~l~~~~~ 94 (413)
T TIGR00200 59 RADVLIFNGGLGPTSDDLTAETIATAKGEPLVLNEA 94 (413)
T ss_pred CCCEEEEcCCCCCCCcccHHHHHHHHhCCCcEECHH
Confidence 356788888865 6799999999999999987553
No 146
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=28.43 E-value=1.6e+02 Score=25.07 Aligned_cols=33 Identities=24% Similarity=0.079 Sum_probs=26.9
Q ss_pred CcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
..+-|+..|||+--+. .+.+|...++|+...+.
T Consensus 77 ~~D~IIavGGGS~iD~-aK~ia~~~~~P~iaIPT 109 (351)
T cd08170 77 GADVVIGIGGGKTLDT-AKAVADYLGAPVVIVPT 109 (351)
T ss_pred CCCEEEEecCchhhHH-HHHHHHHcCCCEEEeCC
Confidence 5788999999998876 67888888999876554
No 147
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=28.31 E-value=3e+02 Score=24.59 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=37.3
Q ss_pred CCcceEEE--ecCccccHHHHHHHHhhh-----CCcEEeccCCCc----------cc--ccccCCHHHHHHHhhc
Q psy9355 127 IQLIKLQV--DGGMTANKHLMQTQADLC-----GIPVGKNLTGGK----------DG--GKYITDVSNASRTMLM 182 (204)
Q Consensus 127 ~~~~~I~~--~GGga~s~~~~Qi~Adv~-----g~pv~~~~~~~a----------~g--~g~~~~~~~a~~~~~~ 182 (204)
..++.|++ .||.++.+...+=+.+.+ .+||++--.++- .| .-.++|++||+++.++
T Consensus 344 ~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~~l~~~~~~~~~~~~l~~A~~~~v~ 418 (422)
T PLN00124 344 DKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVK 418 (422)
T ss_pred CCCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHhCCCCeEEcCCHHHHHHHHHH
Confidence 45666665 799999888877777663 678776443321 22 2256899999888764
No 148
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=28.30 E-value=3.1e+02 Score=23.54 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEe
Q psy9355 99 RGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158 (204)
Q Consensus 99 ~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~ 158 (204)
..++++++++-..-.+.+.++.+....|.++ |...|.| ++....+|+-+|+|..-
T Consensus 250 ~~~~A~~i~~~~~~~m~~ai~~v~~~~G~Dp--v~~gGaG---~~~a~~lA~~lg~~~v~ 304 (318)
T TIGR03123 250 VRNLAKYYYEAQLEQLTEAIEEVLERYGLKT--VVAAGAG---EFLAKEAAARLGRECID 304 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--eEEecch---HHHHHHHHHHcCCCeec
Confidence 3457777777666666666655544446555 3333333 78888899999998653
No 149
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=27.03 E-value=1.4e+02 Score=21.38 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCCcceEEEecCccc---cHHHHHHHHhhhCCcEEeccC
Q psy9355 115 RDILEAMKKDCGIQLIKLQVDGGMTA---NKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 115 ~~~~e~l~~~~g~~~~~I~~~GGga~---s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
+++.+.|.+. -+.+++.|++++ ..--.+-+|+.+|.||.....
T Consensus 2 ~~~~~~L~~A----~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~ 47 (137)
T PF00205_consen 2 DEAADLLSSA----KRPVILAGRGARRSGAAEELRELAEKLGIPVATTPM 47 (137)
T ss_dssp HHHHHHHHH-----SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGG
T ss_pred HHHHHHHHhC----CCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCc
Confidence 4556666552 345888888775 345567789999999986554
No 150
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=26.99 E-value=1.4e+02 Score=22.87 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=22.7
Q ss_pred ceEEEecCccc---cHHHHHHHHhhhCCcEEecc
Q psy9355 130 IKLQVDGGMTA---NKHLMQTQADLCGIPVGKNL 160 (204)
Q Consensus 130 ~~I~~~GGga~---s~~~~Qi~Adv~g~pv~~~~ 160 (204)
+.+++.|++++ ..--.+-+|+.+|.||....
T Consensus 29 RPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~ 62 (162)
T TIGR00315 29 RPLLIVGPENLEDEEKELIVKFIEKFDLPVVATA 62 (162)
T ss_pred CcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcC
Confidence 56888888875 23445667889999998755
No 151
>PRK10586 putative oxidoreductase; Provisional
Probab=26.71 E-value=1.6e+02 Score=25.51 Aligned_cols=33 Identities=18% Similarity=0.044 Sum_probs=26.7
Q ss_pred CcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
..+-|+..|||+--+. .+.+|...++|+...+.
T Consensus 86 ~~d~iiavGGGs~iD~-aK~~a~~~~~p~i~vPT 118 (362)
T PRK10586 86 DRQVVIGVGGGALLDT-AKALARRLGLPFVAIPT 118 (362)
T ss_pred CCCEEEEecCcHHHHH-HHHHHhhcCCCEEEEeC
Confidence 4678999999998776 67888899999876555
No 152
>PRK01215 competence damage-inducible protein A; Provisional
Probab=26.32 E-value=1.3e+02 Score=25.02 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=25.0
Q ss_pred ceEEEecCcc--ccHHHHHHHHhhhCCcEEec
Q psy9355 130 IKLQVDGGMT--ANKHLMQTQADLCGIPVGKN 159 (204)
Q Consensus 130 ~~I~~~GGga--~s~~~~Qi~Adv~g~pv~~~ 159 (204)
+-|+++||.+ ..++..+.+|.++|+++..-
T Consensus 64 DlVIttGG~g~t~dD~t~eaia~~~g~~l~~~ 95 (264)
T PRK01215 64 DVVVSTGGLGPTYDDKTNEGFAKALGVELELN 95 (264)
T ss_pred CEEEEeCCCcCChhhhHHHHHHHHhCCCCCCC
Confidence 6788888776 67999999999999887654
No 153
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=26.03 E-value=1.9e+02 Score=24.44 Aligned_cols=32 Identities=9% Similarity=0.025 Sum_probs=19.9
Q ss_pred CcceEEEecCccccHHHHHHHHhhhCC---cEEeccC
Q psy9355 128 QLIKLQVDGGMTANKHLMQTQADLCGI---PVGKNLT 161 (204)
Q Consensus 128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~---pv~~~~~ 161 (204)
..++|+++||||. ++...+-+.++. .+.+++.
T Consensus 272 ~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~ 306 (318)
T PF06406_consen 272 DIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDD 306 (318)
T ss_dssp S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SS
T ss_pred cCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCC
Confidence 4688999999986 456666666663 4555544
No 154
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=25.98 E-value=1.7e+02 Score=25.03 Aligned_cols=33 Identities=27% Similarity=0.152 Sum_probs=26.9
Q ss_pred CcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
..+-|+..|||+-.+. .+.+|..+++|+...+.
T Consensus 78 ~~d~iiavGGGs~~D~-aK~ia~~~~~p~i~VPT 110 (345)
T cd08171 78 EADMIFAVGGGKAIDT-VKVLADKLGKPVFTFPT 110 (345)
T ss_pred CCCEEEEeCCcHHHHH-HHHHHHHcCCCEEEecC
Confidence 5788999999998876 67888888999875554
No 155
>PRK09557 fructokinase; Reviewed
Probab=25.26 E-value=2.8e+02 Score=22.93 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHH
Q psy9355 106 ALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLM 145 (204)
Q Consensus 106 vlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~ 145 (204)
+++-.+..+...+-.+... .+++.|++.||.++.+.+.
T Consensus 224 ~l~~~~~~La~~l~~l~~~--ldP~~IvlgG~~~~~~~~~ 261 (301)
T PRK09557 224 AFRRYEDRLAKSLAHVINI--LDPDVIVLGGGMSNVDRLY 261 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH--hCCCEEEEcCcccchHHHH
Confidence 3443344444444434332 4678888888887654443
No 156
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=24.64 E-value=1.8e+02 Score=24.55 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=26.7
Q ss_pred CcceEEEecCccccHHHHHHHHhhh--CCcEEeccC
Q psy9355 128 QLIKLQVDGGMTANKHLMQTQADLC--GIPVGKNLT 161 (204)
Q Consensus 128 ~~~~I~~~GGga~s~~~~Qi~Adv~--g~pv~~~~~ 161 (204)
..+-|+..|||+-.+. ...+|..+ ++|+...+.
T Consensus 78 ~~d~IIaiGGGs~~D~-aK~ia~~~~~~~p~i~iPT 112 (332)
T cd07766 78 EVDAVIAVGGGSTLDT-AKAVAALLNRGLPIIIVPT 112 (332)
T ss_pred CcCEEEEeCCchHHHH-HHHHHHHhcCCCCEEEEeC
Confidence 4688999999998876 67888888 899876555
No 157
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=24.28 E-value=34 Score=28.47 Aligned_cols=34 Identities=12% Similarity=0.324 Sum_probs=20.4
Q ss_pred HHHHHHHhcCCCcceEEEecCccccHHHHHHHHhh
Q psy9355 117 ILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADL 151 (204)
Q Consensus 117 ~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv 151 (204)
.+..|+. .|+.+++.+.-||..|.+++..+.+++
T Consensus 203 vI~TLr~-Wgv~vDEafFLgG~~K~~vL~~~~phI 236 (264)
T PF06189_consen 203 VIRTLRS-WGVRVDEAFFLGGLPKGPVLKAFRPHI 236 (264)
T ss_pred HHHHHHH-cCCcHhHHHHhCCCchhHHHHhhCCCE
Confidence 3444544 466666666666666666666665554
No 158
>PLN02235 ATP citrate (pro-S)-lyase
Probab=24.00 E-value=4.6e+02 Score=23.53 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=52.9
Q ss_pred CCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHh---hhCCcEEec
Q psy9355 83 QPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQAD---LCGIPVGKN 159 (204)
Q Consensus 83 ~~~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Ad---v~g~pv~~~ 159 (204)
||+.++.++++-..-++-+.+.+.++||.-.+++.-+.+.. ..+ .|++==+|++...=.+++.+ -.|.|+.+.
T Consensus 327 ~~~vk~ilvnIfGGI~rcd~VA~tf~GIi~A~~e~~~kl~~-~~v---pivVRl~GtN~eeG~~il~e~~~~~gl~i~~~ 402 (423)
T PLN02235 327 NPDGRKRALLIGGGIANFTDVAATFNGIIRALREKESKLKA-ARM---HIFVRRGGPNYQKGLAKMRALGEEIGVPIEVY 402 (423)
T ss_pred CCCCcEEEEEEecccccchhhhhhhhHHHHHHHHhhhcccc-CCc---cEEEECCCCCHHHHHHHHHHhHHhcCCcEEEe
Confidence 45667777766666677777777778887777765433422 122 24444455665555666665 467777662
Q ss_pred cCCCcccccccCCHHHHHHHhhc
Q psy9355 160 LTGGKDGGKYITDVSNASRTMLM 182 (204)
Q Consensus 160 ~~~~a~g~g~~~~~~~a~~~~~~ 182 (204)
.. -.++++|+++.++
T Consensus 403 ~~--------~~~m~~a~~~av~ 417 (423)
T PLN02235 403 GP--------EATMTGICKQAID 417 (423)
T ss_pred CC--------CCCHHHHHHHHHh
Confidence 21 1277887777664
No 159
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=23.99 E-value=2e+02 Score=18.41 Aligned_cols=35 Identities=20% Similarity=0.086 Sum_probs=25.7
Q ss_pred eEEEecCccccHHHHHHHHhhhCCcEEeccCCCccc
Q psy9355 131 KLQVDGGMTANKHLMQTQADLCGIPVGKNLTGGKDG 166 (204)
Q Consensus 131 ~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~~a~g 166 (204)
+|.+.|||.-.--+.+.++. +|+.|.+........
T Consensus 1 ~vvViGgG~ig~E~A~~l~~-~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE-LGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH-TTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHH-hCcEEEEEeccchhh
Confidence 57888999887777777777 888887766654433
No 160
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=23.82 E-value=97 Score=27.65 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=19.2
Q ss_pred cceEEEe-cCccccHHHH----HHHHhhhC--CcEEe
Q psy9355 129 LIKLQVD-GGMTANKHLM----QTQADLCG--IPVGK 158 (204)
Q Consensus 129 ~~~I~~~-GGga~s~~~~----Qi~Adv~g--~pv~~ 158 (204)
++-|+++ ||||..++|. .+.-.|.. .||..
T Consensus 188 ~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis 224 (432)
T TIGR00237 188 CDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIIS 224 (432)
T ss_pred CCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEE
Confidence 5666665 9999999996 33334444 55543
No 161
>KOG0104|consensus
Probab=23.17 E-value=89 Score=30.12 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=24.3
Q ss_pred CcceEEEecCccccHHHHHHHHhhhCCc
Q psy9355 128 QLIKLQVDGGMTANKHLMQTQADLCGIP 155 (204)
Q Consensus 128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~p 155 (204)
.++.|++.||++|-|....++.+..+..
T Consensus 364 eIn~ViL~Gg~TRVP~VQe~l~k~v~~~ 391 (902)
T KOG0104|consen 364 EINQVILFGGATRVPKVQETLIKAVGKE 391 (902)
T ss_pred hhheeEEecCcccCchHHHHHHHHHhHH
Confidence 4788999999999999999988887754
No 162
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=23.10 E-value=1e+02 Score=30.46 Aligned_cols=100 Identities=22% Similarity=0.240 Sum_probs=53.9
Q ss_pred CHHHHHHHHHhcCCCCCeEEecCCCCC-CCCCCCCCCcEEEEcCCCCCCHHHHHH---HHHHHHH--HHHHHHHHHHHHh
Q psy9355 51 GVEEIESLAESHRHTGDVYFVPAFSGL-YAPYWQPDARGIICGITEDTTRGHIVR---AALEAIC--FQTRDILEAMKKD 124 (204)
Q Consensus 51 ~~~~l~~~a~~~~~~~g~~~~P~l~G~-r~P~~~~~~~g~~~Gl~~~~~~~~l~r---AvlEgia--~~~~~~~e~l~~~ 124 (204)
+.+++.++.+.. |-+ +.++|.++.. -.|. ++.....+. ..++-++|-+ |.+. |+ -.....-+.|++.
T Consensus 659 D~~eik~lL~~~-Gl~-v~~vpd~s~~ldg~~-~~~~~~~~~---ggt~~eei~~~~~A~~n-iv~~~~~~~~A~~Leek 731 (917)
T PRK14477 659 DVEEIKEIVEAF-GLD-PVVVPDISNALDGHI-DETVSPLST---GGTTVEDIRAAGRSAAT-LAVGDSLARAAEKLQER 731 (917)
T ss_pred hHHHHHHHHHHc-CCc-eEEecCccccccCCC-CCCccccCC---CCCcHHHHHHhhhCcEE-EEEcHhHHHHHHHHHHH
Confidence 345566666554 333 6678877532 2222 122221211 2345555443 2221 11 1223445667777
Q ss_pred cCCCcceEEEecCccccHHHHHHHHhhhCCcEE
Q psy9355 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPVG 157 (204)
Q Consensus 125 ~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~ 157 (204)
.|++.-..-.-=|....+.|.+-+++++|+++.
T Consensus 732 ~GiP~~~~~~p~G~~~Td~fl~~l~~~~g~~~~ 764 (917)
T PRK14477 732 FGIPAYGFTSLTGLKEVDRFMATLSALSGRPVP 764 (917)
T ss_pred HCCCeeecCCCcchHHHHHHHHHHHHHHCCCCC
Confidence 787654322224788899999999999999864
No 163
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=22.80 E-value=1.5e+02 Score=25.47 Aligned_cols=60 Identities=5% Similarity=-0.061 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecC--ccccH-HHHHHHHhhhCCcEEeccC-CCccccc
Q psy9355 104 RAALEAICFQTRDILEAMKKDCGIQLIKLQVDGG--MTANK-HLMQTQADLCGIPVGKNLT-GGKDGGK 168 (204)
Q Consensus 104 rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GG--ga~s~-~~~Qi~Adv~g~pv~~~~~-~~a~g~g 168 (204)
+++.|+++.++.-.+ - ...+...|+++|- -++.+ .+...+.+.|+.+|.+... .+|.|..
T Consensus 243 dal~~~vameIasLl----~-l~~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~L~~ksAA~G~A 306 (326)
T TIGR03281 243 DSLAMSVAMEIASLG----L-LDCKEAGVVLAGSGGTLREPINFSGKIKRVLSCKVLVLDSESAAIGLA 306 (326)
T ss_pred HHHHHHHHHHHHhhe----e-ccCCCCcEEEeCcchhccCchHHHHHHHHHhCCCeEEecchhhhhhHH
Confidence 466666666554432 1 1123448999987 66888 8999999999999988776 3555543
No 164
>PRK00976 hypothetical protein; Provisional
Probab=22.72 E-value=3.5e+02 Score=23.34 Aligned_cols=49 Identities=6% Similarity=0.027 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccH--HHHHHHHhhhCCc
Q psy9355 105 AALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANK--HLMQTQADLCGIP 155 (204)
Q Consensus 105 AvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~--~~~Qi~Adv~g~p 155 (204)
.+++-++..+...+-.+... .+++.|++.||.++.+ .+.+.+.+.+..+
T Consensus 242 ~aid~~~~~LA~~IAnLi~l--lDPe~IVLGGGVS~~~e~~L~~~I~e~l~~~ 292 (326)
T PRK00976 242 LAIDTLALFVAMEIASLLLL--NPEDNVVLAGSVGEMDEPDVSERIKELLDKK 292 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cCCCEEEEcCccccCchhHHHHHHHHHhccc
Confidence 34444444444444444433 4688899999999875 4555555555443
No 165
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=22.72 E-value=2.2e+02 Score=24.14 Aligned_cols=33 Identities=24% Similarity=0.149 Sum_probs=26.9
Q ss_pred CcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 128 QLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
+.+-|+..|||+-.+. ...+|...++|+...+.
T Consensus 75 ~~d~iIaiGGGsv~D~-aK~vA~~~~~p~i~vPT 107 (331)
T cd08174 75 NVDAVVGIGGGKVIDV-AKYAAFLRGIPLSVPTT 107 (331)
T ss_pred CCCEEEEeCCcHHHHH-HHHHHhhcCCCEEEecC
Confidence 5678999999998876 57777788999986665
No 166
>KOG0100|consensus
Probab=22.45 E-value=2.8e+02 Score=24.99 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=27.1
Q ss_pred CCcceEEEecCccccHHHHHHHHhhh-CCcEEe
Q psy9355 127 IQLIKLQVDGGMTANKHLMQTQADLC-GIPVGK 158 (204)
Q Consensus 127 ~~~~~I~~~GGga~s~~~~Qi~Adv~-g~pv~~ 158 (204)
.+++.|++.||.+|-|-..|++-|.+ |+.-.+
T Consensus 361 sdideiVLVGGsTrIPKvQqllk~fF~GKepsk 393 (663)
T KOG0100|consen 361 SDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSK 393 (663)
T ss_pred ccCceEEEecCcccChhHHHHHHHHhCCCCccC
Confidence 36889999999999999999999999 454443
No 167
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=22.38 E-value=1.6e+02 Score=26.98 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHH--H---HHHHHHHHHHHHhcC
Q psy9355 52 VEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAI--C---FQTRDILEAMKKDCG 126 (204)
Q Consensus 52 ~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~~~l~rAvlEgi--a---~~~~~~~e~l~~~~g 126 (204)
..++.++.+.. |-. +.++|.++.. +|....|-+.=....++.+++.++.--.. + +......+.|++..|
T Consensus 236 ~~eikrlL~~~-Gi~-~~~l~d~s~~----~d~p~~g~~~~~~ggttleei~~a~~A~~~ivl~~~~~~~~a~~l~~~~g 309 (515)
T TIGR01286 236 FREIKRILSLM-GVG-YTLLSDPEEV----LDTPADGEFRMYAGGTTLEEMKDAPNAEATVLLQPYTLRKTKEYIEKTWK 309 (515)
T ss_pred HHHHHHHHHHc-CCC-eEEccCcccc----ccCCCCCCccccCCCCCHHHHHHhhhCcEEEEEchhhhHHHHHHHHHHhC
Confidence 45566666544 332 5566765432 12222222211233567777765432111 1 333445666766566
Q ss_pred CCcceEEEecCccccHHHHHHHHhhhCCcE
Q psy9355 127 IQLIKLQVDGGMTANKHLMQTQADLCGIPV 156 (204)
Q Consensus 127 ~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv 156 (204)
.+.-..-.-=|....+.|.+-+|+++|+|+
T Consensus 310 ~p~~~~~~PiGi~~Td~fL~~la~~~g~~i 339 (515)
T TIGR01286 310 QETPKLNIPLGVKGTDEFLMKVSEISGQPI 339 (515)
T ss_pred CCcccCCCCccHHHHHHHHHHHHHHHCCCC
Confidence 654333223467788999999999999876
No 168
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=22.30 E-value=43 Score=23.91 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355 108 EAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL 160 (204)
Q Consensus 108 Egia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~ 160 (204)
+-++..++..++..++..+.+++.+++.=|++.-+-+.+++..+++.||.+..
T Consensus 46 ~~i~~~i~~a~~~AE~~~k~~i~~v~v~~g~s~l~~i~~~~~~~~~~~v~v~~ 98 (120)
T PF14450_consen 46 EDISKAIKIAIEEAERLAKCEIGSVYVSIGGSKLQNIEELIEKCGGMPVRVAG 98 (120)
T ss_dssp HHHHHHHT--HHHHHHH-HHHH--S--TTGGGGSTTHHHHHHHHHTS-EEE--
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeEEEecCchhHHHhHHHHHHHhCCCcEEEcc
Confidence 33445555666666554355566666643777767789999999999988755
No 169
>PRK00549 competence damage-inducible protein A; Provisional
Probab=22.24 E-value=1.2e+02 Score=26.85 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=27.3
Q ss_pred CcceEEEecCcc--ccHHHHHHHHhhhCCcEEeccC
Q psy9355 128 QLIKLQVDGGMT--ANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 128 ~~~~I~~~GGga--~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
..+-|+++||.. ..++..+.+|+++|+++..-+.
T Consensus 59 ~~DlVItTGGlGpt~dD~t~ea~a~~~g~~l~~~~~ 94 (414)
T PRK00549 59 RSDLIITTGGLGPTKDDLTKETVAKFLGRELVLDEE 94 (414)
T ss_pred CCCEEEECCCCCCCCCccHHHHHHHHhCCCCcCCHH
Confidence 356788888776 6799999999999999876443
No 170
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=21.75 E-value=2.1e+02 Score=24.90 Aligned_cols=48 Identities=19% Similarity=0.031 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355 113 QTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL 160 (204)
Q Consensus 113 ~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~ 160 (204)
+....++.|++.+|.+++-|+..=-|.-|.+..=+.|..+|+||.=.+
T Consensus 76 e~~~a~~~le~~~g~~~~av~~~EiGG~N~~~pl~~Aa~~GlPvvDaD 123 (353)
T PF06032_consen 76 EALRAVEALEKYLGRKIDAVIPIEIGGSNGLNPLLAAAQLGLPVVDAD 123 (353)
T ss_dssp HHHHHHHHHHHHTT--EEEEE-SSSSCCHHHHHHHHHHHHT-EEESB-
T ss_pred HHHHHHHHHHHhhCCCccEEeehhcCccchhHHHHHHHHhCCCEEcCC
Confidence 556778888888899988888764333344444458889999997544
No 171
>PF10876 DUF2669: Protein of unknown function (DUF2669); InterPro: IPR020351 This entry represents various uncharacterised proteins, which include a 15.3kDa protein from Haemophilus phage Aaphi23.
Probab=21.07 E-value=95 Score=22.93 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q psy9355 95 EDTTRGHIVRAALEAICFQTRDIL 118 (204)
Q Consensus 95 ~~~~~~~l~rAvlEgia~~~~~~~ 118 (204)
.++-|.|+++-++||+-|++.+.+
T Consensus 92 FNtyR~Hl~~ll~eGlkyqfaDFf 115 (133)
T PF10876_consen 92 FNTYRSHLLQLLMEGLKYQFADFF 115 (133)
T ss_pred HhHhhhhHHHHHHHHHHHHHHHHh
Confidence 346799999999999999988765
No 172
>KOG3286|consensus
Probab=21.03 E-value=75 Score=25.44 Aligned_cols=45 Identities=13% Similarity=0.114 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhC
Q psy9355 109 AICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCG 153 (204)
Q Consensus 109 gia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g 153 (204)
.+.+.+|+..+.+.+..+.+...+.+.|+--.-+.|...+|.++.
T Consensus 77 CvSCgYk~af~~~~~~l~ekyPgl~IegaNy~Pp~~kr~lAk~v~ 121 (226)
T KOG3286|consen 77 CVSCGYKQAFEQYKKFLKEKYPGLDIEGANYPPPAWKRYLAKVVS 121 (226)
T ss_pred EEecCcHHHHHHHHHHHHhhCCCceeecCcCCCchHHHHHHHHHH
Confidence 356788888888887777778889999999999999999999865
No 173
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=20.94 E-value=3.7e+02 Score=20.22 Aligned_cols=36 Identities=19% Similarity=0.078 Sum_probs=24.9
Q ss_pred cCCCcceEEEe---cCcccc-HHHHHHHHhhhCCcEEecc
Q psy9355 125 CGIQLIKLQVD---GGMTAN-KHLMQTQADLCGIPVGKNL 160 (204)
Q Consensus 125 ~g~~~~~I~~~---GGga~s-~~~~Qi~Adv~g~pv~~~~ 160 (204)
.|..+++++++ |+.+++ --=.+-+|--+|+||.+.+
T Consensus 24 ygfg~k~lV~tka~g~AAQsGIp~~~kla~k~G~~vlvf~ 63 (147)
T COG4080 24 YGFGAKRLVLTKAKGSAAQSGIPEVLKLAFKLGKPVLVFP 63 (147)
T ss_pred cccCccEEEEEecccHhhhhccHHHHHHHHHhCCcEEEeh
Confidence 46678887766 566676 3334667888999998744
No 174
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=20.91 E-value=1.9e+02 Score=25.33 Aligned_cols=29 Identities=41% Similarity=0.515 Sum_probs=22.4
Q ss_pred ceEEEecCcccc---HHHHHHHHhhhCCcEEe
Q psy9355 130 IKLQVDGGMTAN---KHLMQTQADLCGIPVGK 158 (204)
Q Consensus 130 ~~I~~~GGga~s---~~~~Qi~Adv~g~pv~~ 158 (204)
+.+++.|||.-| .-+++-+|.++|+||.-
T Consensus 205 rplivagggiinadaa~l~~efael~gvpvip 236 (592)
T COG3960 205 RPLIVAGGGVINADAAALLQEFAELTGVPVIP 236 (592)
T ss_pred CcEEEecCceecccHHHHHHHHHHHcCCcccc
Confidence 457778887644 56778899999999964
No 175
>PRK08118 topology modulation protein; Reviewed
Probab=20.23 E-value=1.4e+02 Score=22.55 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=22.1
Q ss_pred ceEEEec-CccccHHHHHHHHhhhCCcEEecc
Q psy9355 130 IKLQVDG-GMTANKHLMQTQADLCGIPVGKNL 160 (204)
Q Consensus 130 ~~I~~~G-Gga~s~~~~Qi~Adv~g~pv~~~~ 160 (204)
.+|.++| +||--.-+.+.+++.++.|+.-.+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 4678887 555434578999999999965443
Done!