Query psy9355
Match_columns 204
No_of_seqs 212 out of 1153
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 17:01:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e1j_A Glycerol kinase; struct 100.0 3.1E-41 1.1E-45 301.7 16.8 192 5-200 301-505 (520)
2 3h3n_X Glycerol kinase; ATP-bi 100.0 6.7E-41 2.3E-45 298.7 18.8 188 5-194 281-478 (506)
3 3g25_A Glycerol kinase; IDP007 100.0 5E-41 1.7E-45 299.2 18.0 193 5-200 282-484 (501)
4 2p3r_A Glycerol kinase; glycer 100.0 3.2E-41 1.1E-45 301.0 15.2 194 5-201 279-482 (510)
5 2d4w_A Glycerol kinase; alpha 100.0 1.1E-40 3.8E-45 297.1 17.2 194 6-201 281-484 (504)
6 2w40_A Glycerol kinase, putati 100.0 3E-40 1E-44 294.2 18.7 194 6-201 284-489 (503)
7 3ezw_A Glycerol kinase; glycer 100.0 1E-40 3.4E-45 298.8 15.6 191 6-198 281-481 (526)
8 3hz6_A Xylulokinase; xylulose, 100.0 1.3E-40 4.5E-45 297.1 15.8 188 8-201 282-489 (511)
9 3ifr_A Carbohydrate kinase, FG 100.0 2.5E-40 8.4E-45 295.2 13.2 185 12-201 284-482 (508)
10 3l0q_A Xylulose kinase; xlylul 100.0 5.3E-40 1.8E-44 295.7 14.4 180 22-202 314-527 (554)
11 2dpn_A Glycerol kinase; thermu 100.0 1.6E-39 5.4E-44 289.1 17.3 191 6-201 278-478 (495)
12 2zf5_O Glycerol kinase; hypert 100.0 3E-39 1E-43 287.4 17.1 191 6-201 274-474 (497)
13 3ll3_A Gluconate kinase; xylul 100.0 3.6E-39 1.2E-43 287.4 15.7 188 8-201 276-475 (504)
14 3jvp_A Ribulokinase; PSI-II, N 100.0 3.9E-39 1.3E-43 291.0 14.9 179 22-201 322-528 (572)
15 2itm_A Xylulose kinase, xylulo 100.0 4.2E-38 1.4E-42 279.2 14.0 186 10-201 272-469 (484)
16 3i8b_A Xylulose kinase; strain 100.0 1.5E-34 5.3E-39 258.1 14.3 183 6-200 308-505 (515)
17 4bc3_A Xylulose kinase; transf 100.0 3.4E-34 1.2E-38 257.1 14.0 180 13-201 321-519 (538)
18 2uyt_A Rhamnulokinase; rhamnos 99.9 1.1E-27 3.7E-32 212.5 12.3 171 22-203 287-480 (489)
19 3h6e_A Carbohydrate kinase, FG 99.9 8E-27 2.7E-31 206.7 8.9 133 26-169 291-431 (482)
20 1hux_A Activator of (R)-2-hydr 99.4 1.7E-13 5.8E-18 112.7 6.1 122 31-169 127-252 (270)
21 2ews_A Pantothenate kinase; PA 97.8 0.00026 8.9E-09 58.3 11.9 142 23-168 128-283 (287)
22 2i7n_A Pantothenate kinase 1; 97.7 0.00018 6.1E-09 61.0 8.8 142 23-167 194-354 (360)
23 4ehu_A Activator of 2-hydroxyi 97.1 0.00052 1.8E-08 55.5 5.4 123 32-170 126-251 (276)
24 3h1q_A Ethanolamine utilizatio 97.0 0.0008 2.7E-08 54.1 5.2 100 24-161 159-259 (272)
25 3qbx_A Anhydro-N-acetylmuramic 97.0 0.0037 1.3E-07 53.0 9.4 61 97-161 256-317 (371)
26 3cqy_A Anhydro-N-acetylmuramic 96.7 0.006 2.1E-07 51.7 8.7 57 98-159 264-321 (370)
27 3eno_A Putative O-sialoglycopr 95.7 0.044 1.5E-06 45.8 8.6 125 24-161 147-285 (334)
28 2ivn_A O-sialoglycoprotein end 95.6 0.046 1.6E-06 45.5 8.5 126 23-161 140-280 (330)
29 2ych_A Competence protein PILM 95.6 0.028 9.5E-07 47.2 6.9 63 98-160 275-338 (377)
30 4a2a_A Cell division protein F 95.4 0.023 8E-07 48.9 5.9 62 99-160 294-360 (419)
31 1dkg_D Molecular chaperone DNA 95.1 0.011 3.6E-07 49.9 2.8 60 101-161 307-366 (383)
32 3qfu_A 78 kDa glucose-regulate 95.0 0.035 1.2E-06 46.7 5.7 62 99-161 315-377 (394)
33 3ttc_A HYPF, transcriptional r 94.9 0.1 3.5E-06 47.5 8.9 122 32-161 502-633 (657)
34 4b9q_A Chaperone protein DNAK; 94.6 0.031 1E-06 50.4 4.7 62 99-161 305-366 (605)
35 3i33_A Heat shock-related 70 k 94.6 0.04 1.4E-06 46.6 5.2 61 100-161 324-385 (404)
36 4gni_A Putative heat shock pro 94.5 0.042 1.4E-06 46.7 5.2 58 100-158 317-374 (409)
37 3vth_A Hydrogenase maturation 93.6 0.29 9.9E-06 45.3 9.0 64 96-161 663-729 (761)
38 3en9_A Glycoprotease, O-sialog 93.1 0.33 1.1E-05 42.9 8.4 125 24-161 146-284 (540)
39 2v7y_A Chaperone protein DNAK; 92.1 0.15 5.3E-06 44.7 4.9 61 100-161 275-335 (509)
40 1jce_A ROD shape-determining p 92.0 0.062 2.1E-06 44.4 2.1 71 101-171 248-323 (344)
41 3d2f_A Heat shock protein homo 91.3 0.23 7.7E-06 45.4 5.1 61 100-161 307-367 (675)
42 3ven_A O-carbamoyltransferase 89.2 1 3.6E-05 40.3 7.5 61 98-160 279-340 (576)
43 1yuw_A Heat shock cognate 71 k 89.1 0.37 1.2E-05 42.9 4.5 60 101-161 304-364 (554)
44 4g9i_A Hydrogenase maturation 88.6 0.92 3.1E-05 42.1 6.9 62 97-160 676-740 (772)
45 2kho_A Heat shock protein 70; 84.9 0.2 6.8E-06 45.1 0.3 56 105-161 311-366 (605)
46 2zgy_A Plasmid segregation pro 82.3 1.9 6.5E-05 35.1 5.2 32 128-161 272-306 (320)
47 4apw_A ALP12; actin-like prote 79.0 5.5 0.00019 32.7 7.0 58 100-161 251-309 (329)
48 2f9w_A Pantothenate kinase; CO 72.6 6.8 0.00023 31.5 5.8 43 97-140 202-244 (271)
49 2iir_A Acetate kinase; transfe 70.5 4.6 0.00016 34.4 4.4 47 105-152 300-347 (403)
50 2h3g_X Biosynthetic protein; p 69.6 7.3 0.00025 31.2 5.3 55 97-158 183-237 (268)
51 3bex_A Type III pantothenate k 68.4 8.3 0.00028 30.4 5.4 42 97-140 181-222 (249)
52 3djc_A Type III pantothenate k 62.5 15 0.0005 29.4 5.7 43 97-140 185-229 (266)
53 2e1z_A Propionate kinase; TDCD 59.4 6.4 0.00022 33.7 3.2 47 105-152 308-355 (415)
54 4am6_A Actin-like protein ARP8 59.0 4.1 0.00014 37.0 2.0 48 103-154 478-526 (655)
55 1g99_A Acetate kinase; alpha/b 59.0 6.9 0.00024 33.4 3.4 46 105-151 300-346 (408)
56 2fsj_A Hypothetical protein TA 59.0 3.5 0.00012 34.1 1.5 48 104-154 272-320 (346)
57 1nbw_A Glycerol dehydratase re 55.2 4.8 0.00017 36.0 1.8 72 88-161 505-584 (607)
58 2d0o_A DIOL dehydratase-reacti 54.8 18 0.00062 32.3 5.4 72 88-161 503-582 (610)
59 3khy_A Propionate kinase; csgi 52.4 19 0.00064 30.5 4.9 53 103-156 289-345 (384)
60 2fp4_B Succinyl-COA ligase [GD 52.4 90 0.0031 26.2 9.3 82 88-183 291-391 (395)
61 3sk3_A Acetate kinase, acetoki 46.4 24 0.00081 30.2 4.7 50 102-151 313-363 (415)
62 4ijn_A Acetate kinase, acetoki 46.3 31 0.001 29.3 5.3 47 103-150 299-346 (398)
63 3r9p_A ACKA; ssgcid, seattle s 45.8 28 0.00095 29.5 4.9 47 103-150 290-337 (391)
64 2fxu_A Alpha-actin-1, actin, a 40.1 1.5 5.1E-05 36.6 -3.8 25 129-153 294-318 (375)
65 3cf4_G Acetyl-COA decarboxylas 38.2 85 0.0029 22.7 6.2 31 130-160 36-69 (170)
66 3ufx_B Succinyl-COA synthetase 37.8 1.2E+02 0.0041 25.5 7.8 85 88-186 275-376 (397)
67 3kbq_A Protein TA0487; structu 37.3 43 0.0015 24.8 4.4 33 129-161 63-97 (172)
68 2e2o_A Hexokinase; acetate and 36.8 1.1E+02 0.0038 23.9 7.2 56 103-160 216-272 (299)
69 1saz_A Probable butyrate kinas 35.9 87 0.003 25.9 6.6 50 103-152 270-320 (381)
70 2nu8_B SCS-beta, succinyl-COA 35.5 1.2E+02 0.0042 25.3 7.4 56 127-182 309-383 (388)
71 4h0o_A Acetate kinase; askha ( 35.4 66 0.0023 27.3 5.7 50 101-151 300-350 (404)
72 1k8k_B ARP2, actin-like protei 35.1 6.6 0.00023 32.9 -0.5 47 130-176 299-367 (394)
73 3r8e_A Hypothetical sugar kina 34.4 1E+02 0.0035 24.5 6.7 43 105-149 239-282 (321)
74 2gup_A ROK family protein; sug 30.7 1.3E+02 0.0045 23.3 6.7 41 106-148 207-247 (292)
75 4h0p_A Acetate kinase; askha ( 29.5 55 0.0019 28.1 4.2 50 103-152 322-377 (438)
76 3vgl_A Glucokinase; ROK family 29.0 1.4E+02 0.0049 23.6 6.7 43 104-148 230-273 (321)
77 1zbs_A Hypothetical protein PG 28.1 68 0.0023 25.2 4.5 63 101-167 210-274 (291)
78 4htl_A Beta-glucoside kinase; 28.1 1.1E+02 0.0037 24.1 5.7 46 105-152 216-261 (297)
79 3uhj_A Probable glycerol dehyd 27.7 1.1E+02 0.0039 25.4 6.0 33 129-162 107-139 (387)
80 3cet_A Conserved archaeal prot 27.6 2.3E+02 0.0077 23.3 7.5 52 99-157 248-299 (334)
81 2qm1_A Glucokinase; alpha-beta 25.3 1.8E+02 0.0062 22.8 6.7 44 104-149 240-284 (326)
82 1jq5_A Glycerol dehydrogenase; 23.8 1.3E+02 0.0043 24.7 5.5 33 129-162 87-119 (370)
83 4db3_A Glcnac kinase, N-acetyl 23.7 1.7E+02 0.0059 23.3 6.2 44 106-151 249-292 (327)
84 1mkz_A Molybdenum cofactor bio 23.6 48 0.0016 24.3 2.6 29 129-157 70-100 (172)
85 3js6_A Uncharacterized PARM pr 23.1 1E+02 0.0035 25.2 4.8 51 100-153 263-317 (355)
86 2aa4_A Mannac kinase, putative 20.3 1.3E+02 0.0044 23.3 4.7 46 105-152 212-257 (289)
No 1
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=100.00 E-value=3.1e-41 Score=301.73 Aligned_cols=192 Identities=42% Similarity=0.631 Sum_probs=163.0
Q ss_pred CCCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCC
Q psy9355 5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQP 84 (204)
Q Consensus 5 ~~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~ 84 (204)
+.+..|+++++||.++. ++.|.++|+++++|.+++|+++.++...+|+++++++++.+++++++|+|||.|+|+|+|||
T Consensus 301 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~gl~~lP~l~Ger~P~~d~ 379 (520)
T 4e1j_A 301 VRSKNRLLTTIAYRLDG-ETTYALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADPSQEVYLVPAFTGLGAPHWDP 379 (520)
T ss_dssp CCCSSSCEEEEEEEETT-EEEEEEEEEESCSHHHHHHHHHTTCCC-----CHHHHHTSCTTCCCEEECCTTCBCTTTCBT
T ss_pred ccCCCceeeEEeEecCC-CceEEEcchHhhHHHHHHHHHHHcCCcccHHHHHHHHhcCCCCCcEEEEcCccCCCCCCCCC
Confidence 34467899999998763 46899999999999999999999886567889999999888899999999999999999999
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 85 DARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD---CGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 85 ~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~---~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
++||.|+|++..|+++||+||++|||||++|+++|.|++. .| ++++|+++||++||++|+||+||++|+||.++..
T Consensus 380 ~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~g-~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~~ 458 (520)
T 4e1j_A 380 DARGAIFGMTRNTGPAEFARAALEAVCYQTRDLLEAMHKDWRRNG-NDTVLRVDGGMVASDWTMQRLSDLLDAPVDRPVI 458 (520)
T ss_dssp TCCCEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCEEEESGGGGCHHHHHHHHHHHTSCEEEESC
T ss_pred CCCEEEecccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CcceEEEeCccccCHHHHHHHHHHhCCeEEecCC
Confidence 9999999999999999999999999999999999999885 47 8899999999999999999999999999998765
Q ss_pred C----------CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhcc
Q psy9355 162 G----------GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEIN 200 (204)
Q Consensus 162 ~----------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~ 200 (204)
. ++++.|.|+|++++. ++++..++|+|+++..+ |++.
T Consensus 459 ~e~~alGAA~lA~~a~G~~~~~~~~~-~~~~~~~~~~P~~~~~~-~~~~ 505 (520)
T 4e1j_A 459 LETTALGVAWLAGSRAGVWPNQEAFA-KSWARDRRFEPHMDEAT-RKVK 505 (520)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCHHHHH-HTCCEEEEECCCSCHHH-HHHH
T ss_pred CccHHHHHHHHHHHHcCCcCCHHHHH-hhcCCCeEECCCCCHHH-HHHH
Confidence 2 235678999999974 77788899999988665 3443
No 2
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=100.00 E-value=6.7e-41 Score=298.70 Aligned_cols=188 Identities=38% Similarity=0.619 Sum_probs=168.7
Q ss_pred CCCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCC
Q psy9355 5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQP 84 (204)
Q Consensus 5 ~~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~ 84 (204)
+.+..|++++++|.++. ++.|.++|+++++|.+++|+++.++...+|+++++++++.+..++++|+|||.|+|+|+||+
T Consensus 281 ~~~~~~~~~~~~~~~~g-~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~Ger~P~~d~ 359 (506)
T 3h3n_X 281 QLSDNDLLTTIGYGING-KVYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDS 359 (506)
T ss_dssp CSCCTTSEEEEEEEETT-EEEEEEEEEECCSSHHHHHHHHTSCCCSSTTHHHHHHTTCCSCSCCEEECCTTCBCTTTCBT
T ss_pred ccCCCceEEEeeeecCC-CCEEEEecchhhHHHHHHHHHHHcCCCCcHHHHHHHHhcCCCCCceEEeccccCCCCCccCC
Confidence 34567899999999753 45899999999999999999999886667899999999887668999999999999999999
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC--
Q psy9355 85 DARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG-- 162 (204)
Q Consensus 85 ~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~-- 162 (204)
++||.|+|++..|+++||+||++|||||++|++++.|++..|.++++|+++||++||++|+||+||++|+||.++...
T Consensus 360 ~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~ 439 (506)
T 3h3n_X 360 EARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSGIDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLET 439 (506)
T ss_dssp TCCCEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCEEEEESGGGGCHHHHHHHHHHHTSEEEECSSSCH
T ss_pred CCCEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEecccccCHHHHHHHHHHhCCeEEecCCCcc
Confidence 999999999999999999999999999999999999988668899999999999999999999999999999987752
Q ss_pred --------CcccccccCCHHHHHHHhhccCeEeecCcchh
Q psy9355 163 --------GKDGGKYITDVSNASRTMLMNIETLEWDPMLC 194 (204)
Q Consensus 163 --------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~ 194 (204)
++++.|.|+|++++ +++++..++|+|+++..
T Consensus 440 ~alGaA~lA~~a~G~~~~~~~~-~~~~~~~~~~~P~~~~~ 478 (506)
T 3h3n_X 440 TALGAAYLAGLAVGFWKDLDEL-KSMAEEGQMFTPEMPAE 478 (506)
T ss_dssp HHHHHHHHHHHHTTSSCSHHHH-HTTCCCCCEECCCSCHH
T ss_pred hhHHHHHHHHHHhCccCCHHHH-HHhcCCCeEECCCCCHH
Confidence 23577899999985 67888899999998754
No 3
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=100.00 E-value=5e-41 Score=299.19 Aligned_cols=193 Identities=39% Similarity=0.612 Sum_probs=170.8
Q ss_pred CCCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCC
Q psy9355 5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQP 84 (204)
Q Consensus 5 ~~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~ 84 (204)
+.+..|++++++|.++. +..|.++|+++++|.+++|+++.++...+|+++++++++.+..++++|+|||.|+|+|+||+
T Consensus 282 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~ 360 (501)
T 3g25_A 282 VKSESGLLTTIAYGIDG-KVNYALEGSIFVSGSAIQWLRDGLRMINSAPQSESYATRVDSTEGVYVVPAFVGLGTPYWDS 360 (501)
T ss_dssp CCCSSSCEEEEEEEETT-EEEEEEEEEESCSTHHHHHHHHTSCCCSSGGGHHHHHTTSSCCTTCEEECCTTCBCTTTCBT
T ss_pred ccCCCCeEEEeeEecCC-ccEEEEecccccHHHHHHHHHHHcCCCCcHHHHHHHHhhCCCCCeEEEecccccCCCCCCCC
Confidence 34457899999998753 35899999999999999999999876567999999998887668999999999999999999
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC--
Q psy9355 85 DARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG-- 162 (204)
Q Consensus 85 ~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~-- 162 (204)
++||.|+|++..|+++||+||++|||||++|++++.|++..|.++++|+++||++||++|+||+||++|+||.++...
T Consensus 361 ~arg~~~Gl~~~~~~~~l~RAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~aks~~~~Qi~Adv~g~pV~~~~~~e~ 440 (501)
T 3g25_A 361 EARGAIFGLTRGTEKEHFIRATLESLCYQTRDVMEAMSKDSGIDVQSLRVDGGAVKNNFIMQFQADIVNTSVERPEIQET 440 (501)
T ss_dssp TCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSEEEEESGGGGCHHHHHHHHHHHTSEEEEESCCCH
T ss_pred CCCEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecchhcCHHHHHHHHHHhCCceEecCCCcc
Confidence 999999999999999999999999999999999999988678899999999999999999999999999999987752
Q ss_pred --------CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhcc
Q psy9355 163 --------GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEIN 200 (204)
Q Consensus 163 --------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~ 200 (204)
++++.|.|+|++++ +++++..++|+|+++..+ |+++
T Consensus 441 ~alGaA~la~~a~G~~~~~~~~-~~~~~~~~~~~P~~~~~~-~~~~ 484 (501)
T 3g25_A 441 TALGAAFLAGLAVGFWESKDDI-AKNWKLEEKFDPKMDEGE-REKL 484 (501)
T ss_dssp HHHHHHHHHHHHTTSSSCTHHH-HHHCCEEEEECCCCCHHH-HHHH
T ss_pred hHHHHHHHHHHHhCccCCHHHH-HHhccCCeEECCCCCHHH-HHHH
Confidence 12577899999985 678888999999987653 4443
No 4
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=100.00 E-value=3.2e-41 Score=301.04 Aligned_cols=194 Identities=40% Similarity=0.603 Sum_probs=171.3
Q ss_pred CCCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCC
Q psy9355 5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQP 84 (204)
Q Consensus 5 ~~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~ 84 (204)
+.+..|+++++||.++. |+.|.++|+++++|.+++|+++.++...+++++++++++.++++|++|+|||.|+|+|+||+
T Consensus 279 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~ 357 (510)
T 2p3r_A 279 VKSENGLLTTIACGPTG-EVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDP 357 (510)
T ss_dssp CCCSSSCEEEEEECTTS-CEEEEEEEEESCSHHHHHHHHHTSCCCCSSSCHHHHHTTSSSCTTCEEECCTTCCBTTTCCT
T ss_pred ccCCCCeeEEEeeecCC-CceEEEccchhhHHHHHHHHHHHccCCCcHHHHHHHHhhCCCCCceEEeCcccCCCCCCCCC
Confidence 34567899999998753 57999999999999999999999886567889999998888889999999999999999999
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC--
Q psy9355 85 DARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG-- 162 (204)
Q Consensus 85 ~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~-- 162 (204)
++||.|+|++.+|+++||+||++|||||++|++++.|++..|.++++|+++||++||++|+||+||++|+||.++...
T Consensus 358 ~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~ 437 (510)
T 2p3r_A 358 YARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREV 437 (510)
T ss_dssp TCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSEEEEESGGGGCHHHHHHHHHHHTSEEEEESCCCH
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEeCchhcCHHHHHHHHHHhCCceEecCCCCc
Confidence 999999999999999999999999999999999999988668999999999999999999999999999999987752
Q ss_pred --------CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355 163 --------GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201 (204)
Q Consensus 163 --------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~ 201 (204)
++++.|.|+|+++ ++++++..++|+|+++ .+.|++.+
T Consensus 438 ~alGaA~lA~~a~G~~~~~~~-~~~~~~~~~~~~P~~~-~~~~~~~y 482 (510)
T 2p3r_A 438 TALGAAYLAGLAVGFWQNLDE-LQEKAVIEREFRPGIE-TTERNYRY 482 (510)
T ss_dssp HHHHHHHHHHHHHTSSSCGGG-GTTCCCEEEEECCCSC-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCCHHH-HHHhcCCCeEECCCCC-HHHHHHHH
Confidence 1256788999998 4778888899999975 34555443
No 5
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=100.00 E-value=1.1e-40 Score=297.10 Aligned_cols=194 Identities=45% Similarity=0.720 Sum_probs=171.2
Q ss_pred CCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCC
Q psy9355 6 DSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPD 85 (204)
Q Consensus 6 ~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~ 85 (204)
.+..++++++||.++..++.|+++|+++++|.+++|+++.++...+|+++++++++.++++|++|+|+|.|+|+|+|||+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~ 360 (504)
T 2d4w_A 281 MSKNGLLTTVCYKIGDAPAVYALEGSIAVTGSLVQWLRDNLGMFEDAPDVEWLAGKVQDNGGAYFVPAFSGLFAPYWRPD 360 (504)
T ss_dssp CCSSSCEEEEEECCTTSCCEEEEEEEESCSHHHHHHHHHTTCTTTTCSCTHHHHTTSSSCTTCEEECTTCCCSTTTCCCC
T ss_pred cCCCCcEEEEEEEcCCCCceEEEcchhhhHHHHHHHHHHHhCCCCCHHHHHHHHhhCCCCCCEEEecCCCCCCCCCCCCC
Confidence 34568999999986422348999999999999999999988765668889999988888889999999999999999999
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC---
Q psy9355 86 ARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG--- 162 (204)
Q Consensus 86 ~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~--- 162 (204)
+||.|+|++..|+++||+||++|||||++|++++.|++..|.++++|+++||++||++|+||+||++|+||.++...
T Consensus 361 arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~ 440 (504)
T 2d4w_A 361 ARGALVGLTRYVNRNHIARAALEATAFQSREVVDAMNADSGVDLTELRVDGGMVANELLMQFQADQLGVDVVRPKVAETT 440 (504)
T ss_dssp SCEEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHH
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCcccCHHHHHHHHHHhCCeEEeCCCCcch
Confidence 99999999999999999999999999999999999987678889999999999999999999999999999988753
Q ss_pred -------CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355 163 -------GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201 (204)
Q Consensus 163 -------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~ 201 (204)
++++.|.|+|++++ .++++..++|+|+++. +.|++.+
T Consensus 441 alGaA~lA~~~~G~~~~~~~~-~~~~~~~~~~~P~~~~-~~y~~~y 484 (504)
T 2d4w_A 441 ALGAAYAAGIAVGFWKGEQDV-IDNWAEDKRWSPSMES-GERERLY 484 (504)
T ss_dssp HHHHHHHHHHHHTSSCSHHHH-HHHCCEEEEECCCSCH-HHHHHHH
T ss_pred HHHHHHHHHhhcCccCCHHHH-HhhcCCCeEEccCCCH-HHHHHHH
Confidence 12567889999997 4777888899999887 7777654
No 6
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=100.00 E-value=3e-40 Score=294.21 Aligned_cols=194 Identities=35% Similarity=0.523 Sum_probs=172.0
Q ss_pred CCCCCceeeeeeecCC-CcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCC
Q psy9355 6 DSRQGLLTTVAFKLGD-EPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQP 84 (204)
Q Consensus 6 ~~~~g~~~~~~~~~~~-~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~ 84 (204)
.+..++++++||.++. .++.|+++|+++++|.+++|+++ ++...+|+++++++++.++++|++|+|+|.|+|+|+||+
T Consensus 284 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~g~~~~w~~~-~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~ 362 (503)
T 2w40_A 284 YSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLLK-NKLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAPRWRS 362 (503)
T ss_dssp CCSSSCEEEEEECCSTTSCCEEEEEEEESCSHHHHHHHHH-TTSSSCGGGHHHHHHHCCSCTTCEEECCTTCBCTTTCBT
T ss_pred cCCCCceeEEEeecCCCCCceEEEechhhhhHhHHHHHHH-hCCcCCHHHHHHHHhhCCCCCCEEEecCCCCCCCCCCCC
Confidence 3456889999998642 12489999999999999999999 876567999999998888888999999999999999999
Q ss_pred CCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-ceEEEecCccccHHHHHHHHhhhCCcEEeccCC-
Q psy9355 85 DARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQL-IKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG- 162 (204)
Q Consensus 85 ~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~-~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~- 162 (204)
++||.|+|++..|+++|++||++|||||++|+++|.|++..|.++ ++|+++||++||++|+|++||++|+||.++...
T Consensus 363 ~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~~i~~~GG~a~s~~~~Q~~Adv~g~pV~~~~~~e 442 (503)
T 2w40_A 363 DARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTSDMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKE 442 (503)
T ss_dssp TCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCEEEESGGGGCHHHHHHHHHHHTSCEEEESCSC
T ss_pred CCcEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccceEEEeCccccCHHHHHHHHHHHCCeEEecCCCc
Confidence 999999999999999999999999999999999999987668888 999999999999999999999999999988753
Q ss_pred ---------CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355 163 ---------GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201 (204)
Q Consensus 163 ---------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~ 201 (204)
++++.|.|+|++++.+.|++..++|+|+++. +.|++.+
T Consensus 443 ~~alGaA~la~~~~G~~~~~~~~~~~~~~~~~~~~P~~~~-~~y~~~y 489 (503)
T 2w40_A 443 VTSLGAAVLAGLEVKIWDSLDSVKSLLRRSDAVFHSKMDD-KKRKKKT 489 (503)
T ss_dssp HHHHHHHHHHHHHTTCSSCHHHHHHHHTCEEEEECCCSCH-HHHHHHH
T ss_pred chHHHHHHHHHHHhCccCCHHHHHHhccCCCcEEccCCCH-HHHHHHH
Confidence 1256788999999988878888999999887 7777654
No 7
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=100.00 E-value=1e-40 Score=298.81 Aligned_cols=191 Identities=40% Similarity=0.594 Sum_probs=164.9
Q ss_pred CCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCC
Q psy9355 6 DSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPD 85 (204)
Q Consensus 6 ~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~ 85 (204)
.+..++++.+++... .++.|.++|+++++|.+++||++.++......+.+..+...++++|++|+|+|.|+|+|+|||+
T Consensus 281 ~~~~~~~~~~~~~~~-~~~~y~~eg~~~~~G~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~gl~~lP~~~G~r~P~~d~~ 359 (526)
T 3ezw_A 281 KSENGLLTTIACGPT-GEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPY 359 (526)
T ss_dssp CCSSSCEEEEEECTT-SCEEEEEEEEESCSHHHHHHHHHTSCCCCSSSCHHHHHTTSSSCTTCEEECCTTCBCTTTCBTT
T ss_pred cccccceeeeeeccC-CcceeeeHHHHHHHHHHHHHHHHHhccccchhHHHHHHhccCCCCCeEEeCCCCCCCCCCCCcc
Confidence 345677777777644 3678999999999999999999998865444445556666668999999999999999999999
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC---
Q psy9355 86 ARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG--- 162 (204)
Q Consensus 86 ~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~--- 162 (204)
+||+|+||+..|+++||+||++|||||.+|+++|.|++..|.++++|+++||++||++|+||+||++|+||.++...
T Consensus 360 arG~~~Glt~~~~~~~i~RAvlEgia~~~r~~le~l~~~~g~~~~~i~v~GGgaks~~~~Qi~ADvlg~pV~~~~~~E~~ 439 (526)
T 3ezw_A 360 ARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVT 439 (526)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSEEEEESGGGGCHHHHHHHHHHHTSEEEEESCCCHH
T ss_pred cCeEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECchhhCHHHHHHHHHHHCCEEEeCCCCchH
Confidence 99999999999999999999999999999999999988789999999999999999999999999999999998763
Q ss_pred -------CcccccccCCHHHHHHHhhccCeEeecCcchhhhhh
Q psy9355 163 -------GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWE 198 (204)
Q Consensus 163 -------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~ 198 (204)
+++|.|+|+|++|+. ++++..++|+|+++..+.|+
T Consensus 440 alGAA~lA~~a~G~~~~~~e~~-~~~~~~~~~~P~~~~~~~~~ 481 (526)
T 3ezw_A 440 ALGAAYLAGLAVGFWQNLDELQ-EKAVIEREFRPGIETTERNY 481 (526)
T ss_dssp HHHHHHHHHHHTTSSSCGGGST-TCCCEEEEECCCSCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHH-HhcCCCeEEcCCCCHHHHHH
Confidence 236789999999975 45567899999988776544
No 8
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=100.00 E-value=1.3e-40 Score=297.11 Aligned_cols=188 Identities=21% Similarity=0.182 Sum_probs=165.2
Q ss_pred CCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcC--CCCCHHHHHHHHHhcC-C---CCCeEEecCCCCCCCCC
Q psy9355 8 RQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVG--MVTGVEEIESLAESHR-H---TGDVYFVPAFSGLYAPY 81 (204)
Q Consensus 8 ~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~--~~~~~~~l~~~a~~~~-~---~~g~~~~P~l~G~r~P~ 81 (204)
..+.+.+++|.+ |+.|.+.|+++++|.+++|+++.++ ...+|+++++++++.+ + ++|++|+|||.|+|+|+
T Consensus 282 ~~~~~~~~~~~~---~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~l~~~a~~~~~g~~~~~gl~~~P~~~Ger~P~ 358 (511)
T 3hz6_A 282 PVGTIFRLAGII---AGKTLQVAPVLNAGNILQWALTLVGHRPGEDCAEYFHMAAAEVQGVTVPDGLLFVPYLHAERCPV 358 (511)
T ss_dssp CSSCCEEECSSS---TTEEEEEEEESSSHHHHHHHGGGGTCCTTSCSHHHHHHHHHHHTTCCCCTTCEEEEESSCBCSSS
T ss_pred CCCceEEEEEec---CCceEEEeehhhHHHHHHHHHHHhcccccccHHHHHHHHHhCCCCCCCCCCEEEeCCCCCCCCCC
Confidence 567888899874 4666666999999999999999987 5457999999988764 7 89999999999999999
Q ss_pred CCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcE-Eecc
Q psy9355 82 WQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV-GKNL 160 (204)
Q Consensus 82 ~~~~~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv-~~~~ 160 (204)
||+++||.|+|++..|+++||+||++|||||++|++++.|++ |. +++|+++||++||++|+||+||++|+|| .++.
T Consensus 359 ~d~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~~~~~~~l~~--g~-~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~ 435 (511)
T 3hz6_A 359 ELPAPRGALLGVTGATTRAQILLAVLEGAALSLRWCAELLGM--EK-VGLLKVVGGGARSEAWLRMIADNLNVSLLVKPD 435 (511)
T ss_dssp CBSSCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTG--GG-CCEEEEESGGGGCHHHHHHHHHHHTCEEEECCC
T ss_pred CCCccceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc--CC-CCEEEEeCchhcCHHHHHHHHHHHCCeeEEecC
Confidence 999999999999999999999999999999999999999976 77 9999999999999999999999999999 8866
Q ss_pred CC----------CcccccccCCHHHHHHHh---hccCeEeecCcchhhhhhccC
Q psy9355 161 TG----------GKDGGKYITDVSNASRTM---LMNIETLEWDPMLCGVWEINM 201 (204)
Q Consensus 161 ~~----------~a~g~g~~~~~~~a~~~~---~~~~~~~~P~~~~~~~y~~~~ 201 (204)
.. ++++.|.++|++++++++ ++..++|+|+++.++.|++.+
T Consensus 436 ~~e~~alGaA~lA~~a~G~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~~y 489 (511)
T 3hz6_A 436 AHLHPLRGLAALAAVELEWSHSIQDFLREADLREPASNILHPQPCDEGRRRRKF 489 (511)
T ss_dssp GGGHHHHHHHHHHHHHTTSCSCHHHHHHHHHTC---CCCBCCCCCCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhCCcCCHHHHHHHhhccCCCCeEECcCHHHHHHHHHHH
Confidence 42 235778999998889999 899999999999888887765
No 9
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=100.00 E-value=2.5e-40 Score=295.18 Aligned_cols=185 Identities=24% Similarity=0.323 Sum_probs=160.4
Q ss_pred eeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCC-CC--CHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCCCc
Q psy9355 12 LTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGM-VT--GVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDAR 87 (204)
Q Consensus 12 ~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~-~~--~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~~~ 87 (204)
+.+++|. .|+.|+++|+++++|.+++|+++.+.. .. +|+++++++++.+ +++|++|+|||.|+|+|+|||++|
T Consensus 284 ~~~~~~~---~~g~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~~l~~~a~~~~~~~~gl~flP~~~Ger~P~~d~~ar 360 (508)
T 3ifr_A 284 LYLDYHL---VPGLYAPNGCMAATGSALNWLAKLLAPEAGEAAHAQLDALAAEVPAGADGLVCLPYFLGEKTPIHDPFAS 360 (508)
T ss_dssp BBCCBCS---STTCBCCEEEESSSHHHHHHHHHHHSTTCTTHHHHHHHHHHHTSCTTGGGCEEECCTTCCC----CCCCC
T ss_pred cceeeee---cCCceEEechhhhhHHHHHHHHHHHhhcCCCCCHHHHHHHHhcCCCCCCCeEEecCCCCCCCCCCCCCcC
Confidence 5566665 368899999999999999999998842 12 5899999888765 899999999999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC--C--
Q psy9355 88 GIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG--G-- 163 (204)
Q Consensus 88 g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~--~-- 163 (204)
|.|+|++..|+++||+||++|||||++|+++|.|++ .|.++++|+++||++||++|+||+||++|+||.+++.. +
T Consensus 361 g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~al 439 (508)
T 3ifr_A 361 GTFTGLSLSHTRGHLWRALLEAVALAFRHHVAVLDD-IGHAPQRFFASDGGTRSRVWMGIMADVLQRPVQLLANPLGSAV 439 (508)
T ss_dssp CEEESCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-HTCCCCEEEEESGGGGCHHHHHHHHHHHTSCEEEEECCSTHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCEEEEeCCcccCHHHHHHHHHHhCCeEEecCCCCchHH
Confidence 999999999999999999999999999999999987 58999999999999999999999999999999998752 1
Q ss_pred ------cccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355 164 ------KDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201 (204)
Q Consensus 164 ------a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~ 201 (204)
+++.|.|+|++++ .++++..++|+|+++.++.|++.+
T Consensus 440 GaA~lA~~a~G~~~~~~~~-~~~~~~~~~~~P~~~~~~~y~~~y 482 (508)
T 3ifr_A 440 GAAWVAAIGGGDDLGWDDV-TALVRTGEKITPDPAKAEVYDRLY 482 (508)
T ss_dssp HHHHHHHHHTCSSCCGGGG-GGGSEEEEEECCCGGGHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHH-HhhcCCCeEECcCHHHHHHHHHHH
Confidence 2567889999986 458888999999999888888765
No 10
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=100.00 E-value=5.3e-40 Score=295.72 Aligned_cols=180 Identities=22% Similarity=0.293 Sum_probs=160.6
Q ss_pred CcceEEecchhhchhHHHHHHHHhcCC------------CCCHHHHHHHHHhcC-C-------CCCeEEecCCCCCCCCC
Q psy9355 22 EPVVYALEGSVAVAGAAMNWLRDNVGM------------VTGVEEIESLAESHR-H-------TGDVYFVPAFSGLYAPY 81 (204)
Q Consensus 22 ~p~~y~~~g~~~~~G~~~~W~~~~~~~------------~~~~~~l~~~a~~~~-~-------~~g~~~~P~l~G~r~P~ 81 (204)
.|+.|+++|+++++|.+++|+++.++. .+.|+.+++.+++.+ + ++|++|+|||.|+|+|+
T Consensus 314 ~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gl~flP~~~Ger~P~ 393 (554)
T 3l0q_A 314 LPEYWLNEGGQSATGALIDHIIQSHPCYPALLEQAKNKGETIYEALNYILRQMAGEPENIAFLTNDIHMLPYFHGNRSPR 393 (554)
T ss_dssp STTCEEEEEEESCSHHHHHHHHHTSTTHHHHHHHHHHTTCCHHHHHHHHHHHHHSSGGGGGGGGTTCCEECCTTCBCSSS
T ss_pred cCCceEecchhhhhHHHHHHHHHhcccchHHHHHHHhcCCCHHHHHHHHHHhcCCCCCccccccCceEEcccccCCCCCC
Confidence 378999999999999999999998752 134777877766543 3 68999999999999999
Q ss_pred CCCCCcEEEEcCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEe
Q psy9355 82 WQPDARGIICGITEDTTRGHI---VRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158 (204)
Q Consensus 82 ~~~~~~g~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~ 158 (204)
|||++||+|+||+.+|+++|| +||++|||||++|+++|.|++ .|.++++|+++||++||++|+||+||++|+||.+
T Consensus 394 ~d~~arg~~~Gl~~~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~-~g~~~~~i~~~GG~aks~~~~Qi~ADv~g~pV~~ 472 (554)
T 3l0q_A 394 ANPNLTGIITGLKLSTTPEDMALRYLATIQALALGTRHIIETMNQ-NGYNIDTMMASGGGTKNPIFVQEHANATGCAMLL 472 (554)
T ss_dssp CBTTCCCEECSCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCCCCEEEEESGGGGCHHHHHHHHHHHCCEEEE
T ss_pred CCCCCcEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCEEEEeCccccCHHHHHHHHHhhCCeEEe
Confidence 999999999999999999999 889999999999999999987 6889999999999999999999999999999999
Q ss_pred ccCC----------CcccccccCCHHHHHHHhhccCeEeec-CcchhhhhhccCC
Q psy9355 159 NLTG----------GKDGGKYITDVSNASRTMLMNIETLEW-DPMLCGVWEINMQ 202 (204)
Q Consensus 159 ~~~~----------~a~g~g~~~~~~~a~~~~~~~~~~~~P-~~~~~~~y~~~~~ 202 (204)
++.. ++++.|.|+|++++++++++..++|+| |++.++.|++.++
T Consensus 473 ~~~~e~~alGAA~lA~~a~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~Y~~~y~ 527 (554)
T 3l0q_A 473 PEESEAMLLGSAMMGTVAAGVFESLPEAMAAMSRIGKTVTPQTNKIKAYYDRKYR 527 (554)
T ss_dssp ESCSCHHHHHHHHHHHHHTTSSSSHHHHHHHHCCEEEEECCCCHHHHHHHHHHHH
T ss_pred cCCCcchHHHHHHHHHHHcCCcCCHHHHHHHhcCCCcEEeCCCHHHHHHHHHHHH
Confidence 8753 235788999999999999999999999 9999999887653
No 11
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=1.6e-39 Score=289.07 Aligned_cols=191 Identities=44% Similarity=0.708 Sum_probs=168.5
Q ss_pred CCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCC
Q psy9355 6 DSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPD 85 (204)
Q Consensus 6 ~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~ 85 (204)
.+..++++++||.++. ++.|.++|+++++|.+++|+++ ++...+|+++++++++.++++|++|+|+|.|+|+|+||++
T Consensus 278 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~g~~~~w~~~-~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~ 355 (495)
T 2dpn_A 278 LSEKGLLATVAWSLGG-RATYALEGSLFVAGAAVGWLKE-VGLIRESAEVEALAASVEDTGDVYFVPAFTGLGAPYWDPY 355 (495)
T ss_dssp CCSSSCEEEEEEEETT-EEEEEEEEEESCSHHHHHHHHH-TTSSSSTTTHHHHHHTCSCCSSCEEECCTTCBCTTTCBTT
T ss_pred cCCCCceEEEEEEcCC-CCEEEEechHHhHHHHHHHHHH-cCCccCHHHHHHHHhhCCCCCcEEEecCCCCCCCCCCCCC
Confidence 3456899999999753 4689999999999999999999 8765678899999988888889999999999999999999
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC--C
Q psy9355 86 ARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG--G 163 (204)
Q Consensus 86 ~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~--~ 163 (204)
+||.|+|++..|+++||+||++|||||+++++++.|++..|.++++|+++||++||++|+|++||++|+||.++... +
T Consensus 356 arg~~~Gl~~~~~~~~~~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~a~n~~~~q~~Adv~g~pV~~~~~~e~~ 435 (495)
T 2dpn_A 356 ARGTLLGLTRGTSRAHLARAALEGVAFQVRDVVLAMEEEAGVRLKVLKADGGMAQNRLFLKIQADLLGVPVAVPEVTETT 435 (495)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCCCEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHH
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccccCHHHHHHHHHHhCCeeEecCCcccH
Confidence 99999999999999999999999999999999999987668888999999999999999999999999999988753 1
Q ss_pred --------cccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355 164 --------KDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201 (204)
Q Consensus 164 --------a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~ 201 (204)
+.+.|.+ |++++ .++++..++|+|+++. +.|++.+
T Consensus 436 alGaA~la~~a~G~~-~~~~~-~~~~~~~~~~~P~~~~-~~y~~~~ 478 (495)
T 2dpn_A 436 ALGAALMAGVGAGAL-SPEDV-AGRFREAERFLPTMPE-GRREALY 478 (495)
T ss_dssp HHHHHHHHHHHHTSC-CHHHH-HHHCCEEEEECCCSCH-HHHHHHH
T ss_pred HHHHHHHHHhhcCcC-CHHHH-HHhcCCCeEEccCCCH-HHHHHHH
Confidence 2466888 99987 4777788899999887 6666543
No 12
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=100.00 E-value=3e-39 Score=287.40 Aligned_cols=191 Identities=42% Similarity=0.578 Sum_probs=168.4
Q ss_pred CCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCC
Q psy9355 6 DSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPD 85 (204)
Q Consensus 6 ~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~ 85 (204)
.+..|+++++||.++. ++.|+++|+++++|.+++|+++.++...+|+++++++++.+++++++|+|+|.|+|+|+||++
T Consensus 274 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~G~~~~w~~~~~~~~~~~~~l~~~a~~~~~~~gl~~~P~~~G~r~P~~d~~ 352 (497)
T 2zf5_O 274 LYSDNLLTTIAWGLNG-RVSYALEGSIFVTGAAVQWLRDGIKIIKHASETEELATKLESNEGVYFVPAFVGLGAPYWDQF 352 (497)
T ss_dssp CCCTTSEEEEEEEETT-EEEEEEEEEESCSHHHHHHHHHTSCCCSCGGGHHHHHTTSSSCTTCEEECCTTCBCTTTCBTT
T ss_pred cCCCCcEEEEEEEcCC-CCEEEEechhhhHHHHHHHHHHHhCCCCcHHHHHHHHhhCCCCCceEEecCcCCCCCCCCCCC
Confidence 3456889999999753 468999999999999999999998765678999999988888889999999999999999999
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC---
Q psy9355 86 ARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG--- 162 (204)
Q Consensus 86 ~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~--- 162 (204)
+||.|+|++..|+++|++||++|||||+++++++.|++ .+ ++++|+++||++||++|+|++||++|+||.++...
T Consensus 353 arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~l~~l~~-~~-~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~ 430 (497)
T 2zf5_O 353 ARGIIIGITRGTGREHLARATLEAIAYLTRDVVDEMEK-LV-QIKELRVDGGATANDFLMQFQADILNRKVIRPVVKETT 430 (497)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHTT-TS-CCCCEEEESGGGGCHHHHHHHHHHHTSCEEEESCSCHH
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CcceEEEeCccccCHHHHHHHHhhcCCeEEEcCCCcch
Confidence 99999999999999999999999999999999999976 45 78999999999999999999999999999988763
Q ss_pred -------CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355 163 -------GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201 (204)
Q Consensus 163 -------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~ 201 (204)
++++.|.|+|++++ .++++..++|+|+++. +.|++.+
T Consensus 431 alGaA~lA~~~~g~~~~~~~~-~~~~~~~~~~~P~~~~-~~y~~~y 474 (497)
T 2zf5_O 431 ALGAAYLAGLAVDYWADTREI-AELWKAERIFEPKMDE-KTRERLY 474 (497)
T ss_dssp HHHHHHHHHHHTTSSCCHHHH-HTTCCEEEEECCCCCH-HHHHHHH
T ss_pred HHHHHHHHHHHhCccCCHHHH-HHhcCCCeEECCCccH-HHHHHHH
Confidence 12567889999997 5777888899999876 6666543
No 13
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=100.00 E-value=3.6e-39 Score=287.42 Aligned_cols=188 Identities=19% Similarity=0.312 Sum_probs=162.5
Q ss_pred CCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCC-CCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCC
Q psy9355 8 RQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMV-TGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPD 85 (204)
Q Consensus 8 ~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~-~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~ 85 (204)
..+.+ +||.++ ++.|+++|+++++|.+++|+++.++.. .+++++.+++++.+ +++|++|+|||.|+|+|+||++
T Consensus 276 ~~~~~--~~~~~~--~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~~~~a~~~~~g~~gl~~~P~~~Ger~P~~d~~ 351 (504)
T 3ll3_A 276 PSASY--FCYPAD--KTHYLLGGPVNNGGIVFNWARQTLFDADETPQDFLDVAQTAPAGSRNLIFLPYLGGERAPIWDAN 351 (504)
T ss_dssp TTCCS--EEEEEE--TTEEEEEEEESCSHHHHHHHHHHHTCTTCCHHHHHHHHHTSCTTGGGCEEECCTTCBCTTTCBTT
T ss_pred CCCce--EEEEeC--CCeEEEEeehhhHHHHHHHHHHHhccchhHHHHHHHHHhcCCCCCCCeEEecCccCCCCCCCCCc
Confidence 34444 677655 589999999999999999999988642 23444444777776 8899999999999999999999
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC---
Q psy9355 86 ARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG--- 162 (204)
Q Consensus 86 ~~g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~--- 162 (204)
+||+|+|++..|+++||+||++|||||++|+++|.|++ .+.++++|+++||++||++|+||+||++|+||.++...
T Consensus 352 arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~~~~l~~-~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~ 430 (504)
T 3ll3_A 352 ARGSFVGLTRMHQKPEMARAVIEGIIFNLYDAASNLIK-NTKKPVAINATGGFLKSDFVRQLCANIFNVPIVTMKEQQSG 430 (504)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TSCCCSEEEEESGGGCSHHHHHHHHHHHTSCEEEESCSCHH
T ss_pred cCeEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCEEEEeCchhcCHHHHHHHHHhhCCeEEecCCCCch
Confidence 99999999999999999999999999999999999987 47789999999999999999999999999999998652
Q ss_pred -------CcccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355 163 -------GKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201 (204)
Q Consensus 163 -------~a~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~ 201 (204)
++++.|.++|+++ ++++++..++|+|+++.++.|++.+
T Consensus 431 alGaA~lA~~a~G~~~~~~~-~~~~~~~~~~~~P~~~~~~~Y~~~y 475 (504)
T 3ll3_A 431 TLAAMFLARQALGLNQDLSE-IGQFAQADKVYFPNPKEAATYQKLF 475 (504)
T ss_dssp HHHHHHHHHHHTTSCCSGGG-GGGTSCEEEEECCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCccCCHHH-HHHhcCCCeEEccCHHHHHHHHHHH
Confidence 1256788999987 6788898999999999888887765
No 14
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=100.00 E-value=3.9e-39 Score=291.05 Aligned_cols=179 Identities=22% Similarity=0.253 Sum_probs=161.0
Q ss_pred CcceEEecchhhchhHHHHHHHHhcCC-----------CCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCCCcEE
Q psy9355 22 EPVVYALEGSVAVAGAAMNWLRDNVGM-----------VTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDARGI 89 (204)
Q Consensus 22 ~p~~y~~~g~~~~~G~~~~W~~~~~~~-----------~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~~~g~ 89 (204)
.|+.|.++|+++++|.+++||++.+.. .+.|+++++++++.+ +++|++|+|||.|+|+|+|||++||.
T Consensus 322 ~~g~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~~~g~~~~~~l~~~a~~~~~g~~gl~~lP~~~Ger~P~~d~~arg~ 401 (572)
T 3jvp_A 322 IPGYLGYEAGQSAVGDIFAWFVKHGVSAATFDEAQEKGVNVHALLEEKASQLRPGESGLLALDWWNGNRSILVDTELSGM 401 (572)
T ss_dssp STTSEEEEEEESCSHHHHHHHHHHTSBHHHHHHHHHTTBCHHHHHHHHHTSSCTTSSCCEEECCTTCCCTTTCCSSCCEE
T ss_pred CCCcEEEeehhhhHHHHHHHHHHhccchhhHHHHHhcCCCHHHHHHHHHHhCCCCCCCeEeCCccCCCCCCCCCCCcCEE
Confidence 479999999999999999999998842 123788999998876 88999999999999999999999999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcc-ccHHHHHHHHhhhCCcEEeccCC------
Q psy9355 90 ICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMT-ANKHLMQTQADLCGIPVGKNLTG------ 162 (204)
Q Consensus 90 ~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga-~s~~~~Qi~Adv~g~pv~~~~~~------ 162 (204)
|+|++..|+++||+||++|||||++|+++|.|++ .|.++++|+++||++ ||++|+||+||++|+||.++...
T Consensus 402 ~~Gl~~~~t~~~l~RAvlEgia~~~r~~~~~l~~-~g~~~~~i~~~GGga~ks~~~~Qi~ADv~g~pV~~~~~~e~~alG 480 (572)
T 3jvp_A 402 LLGYTLQTKPEEIYRALLEATAFGTRAIVDAFHG-RGVEVHELYACGGLPQKNHLLMQIFADVTNREIKVAASKQTPALG 480 (572)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TTCCEEEEEEESSHHHHCHHHHHHHHHHHTSCEEEBCCSSHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcCEEEEEcCchhhCHHHHHHHHHHHCCeeEecCCCccHHHH
Confidence 9999999999999999999999999999999987 799999999999999 99999999999999999988763
Q ss_pred ----Cccccc----ccCCHHHHHHHhhcc-CeEeecCcchhhhhhccC
Q psy9355 163 ----GKDGGK----YITDVSNASRTMLMN-IETLEWDPMLCGVWEINM 201 (204)
Q Consensus 163 ----~a~g~g----~~~~~~~a~~~~~~~-~~~~~P~~~~~~~y~~~~ 201 (204)
++++.| .|+|++++.+.|++. .++|+|+++.++.|++.+
T Consensus 481 aA~lA~~a~G~~~~~~~~~~e~~~~~~~~~~~~~~P~~~~~~~Y~~~y 528 (572)
T 3jvp_A 481 AAMFASVAAGSEVGGYDSIEEAAKKMGRVKDETFKPIPEHVAIYEKLY 528 (572)
T ss_dssp HHHHHHHHHCSSSSSCSCHHHHHHHHCCBCSCCBCCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCccccCCHHHHHHHhhccCCeEEeeCHHHHHHHHHHH
Confidence 124677 899999999988875 578999999988888765
No 15
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=100.00 E-value=4.2e-38 Score=279.16 Aligned_cols=186 Identities=18% Similarity=0.297 Sum_probs=154.3
Q ss_pred CceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCCCcE
Q psy9355 10 GLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDARG 88 (204)
Q Consensus 10 g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~~~g 88 (204)
+.+.++++. .|+.|+++++++++|.+++|+++.++. .+|+++++.++..+ ++++++|+|||.|+|+|+||+++||
T Consensus 272 ~~~~~~~~~---~~g~~~~~~~~~~~G~~~~W~~~~~~~-~~~~~~~~~a~~~~~~~~gl~~lP~~~G~r~P~~~~~a~g 347 (484)
T 2itm_A 272 SAVHSFCHA---LPQRWHLMSVMLSAASCLDWAAKLTGL-SNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKG 347 (484)
T ss_dssp SSCEEEECS---STTCEEEEEEECCHHHHHHHHHHHTTC-CSHHHHHHHGGGCCTTSCCCEEEEEEC--------CCEEE
T ss_pred cceEEeecc---cCCeeeeeehhhhHHHHHHHHHHhcCc-ccHHHHHHHHhcCCCCCCCeEEeCCCCCCCCCCCCCCCce
Confidence 344556654 468999999999999999999998864 46888888887765 8999999999999999999999999
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC---Cc-
Q psy9355 89 IICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG---GK- 164 (204)
Q Consensus 89 ~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---~a- 164 (204)
.|+|++.+|+++||+||++|||+|++|++++.|++ .|.++++|+++||++||++|+|++||++|+||.+++.. ++
T Consensus 348 ~~~Gl~~~~~~~~~~rAvlEgia~~~~~~~~~l~~-~g~~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~~al 426 (484)
T 2itm_A 348 VFFGLTHQHGPNELARAVLEGVGYALADGMDVVHA-CGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPAL 426 (484)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHHHHHHHHHHHT-TTCCCSCEEEESGGGCCHHHHHHHHHHHCCCEEEESCTTSCHHH
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcceEEEEeccccCHHHHHHHHHHhCCeEEeCCCCCcccHH
Confidence 99999999999999999999999999999999987 58888999999999999999999999999999998763 22
Q ss_pred -------ccccccCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355 165 -------DGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201 (204)
Q Consensus 165 -------~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~ 201 (204)
++.|.++|++++.+.+ +..++|+|+++.++.|++.+
T Consensus 427 GAA~lA~~~~g~~~~~~~~~~~~-~~~~~~~P~~~~~~~y~~~y 469 (484)
T 2itm_A 427 GAARLAQIAANPEKSLIELLPQL-PLEQSHLPDAQRYAAYQPRR 469 (484)
T ss_dssp HHHHHHHHHHCTTSCHHHHSCCC-CEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCCHHHHHHhc-CCCeEECCCHHHHHHHHHHH
Confidence 3567889999986654 56788999999888887654
No 16
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=100.00 E-value=1.5e-34 Score=258.11 Aligned_cols=183 Identities=19% Similarity=0.216 Sum_probs=154.2
Q ss_pred CCCCCceeeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCC
Q psy9355 6 DSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQP 84 (204)
Q Consensus 6 ~~~~g~~~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~ 84 (204)
.+..+.+.++++. ++.|+.+++++++|.+++|+++.++. +|+++++++++.+ +++|++|+|||.|+|+|+| |
T Consensus 308 ~~~~~~~~~~~~~----~g~~~~~~~~~~gg~~l~w~~~~~~~--~~~~l~~~a~~~~~g~~gl~~lP~~~Ger~P~~-~ 380 (515)
T 3i8b_A 308 YDLTGAVSGFADC----TGHYLPLACTINGSRILDAGRAALGV--DYDELAKLAFASKPGANGITLVPYFDGERTPNR-P 380 (515)
T ss_dssp CCTTSCSEEEECS----SSSEEEEEEESCSTHHHHHHHHHHTC--CHHHHHHHHHHSCTTGGGCEEECCTTCBTTTTB-T
T ss_pred cCCCCcEEeeecC----CCCEEEeeecccHHHHHHHHHHHhCC--CHHHHHHHHHhCCCCCCCeEEecCCCCCcCCCC-c
Confidence 3456778888875 67899999999999999999998875 6999999999886 8889999999999999976 9
Q ss_pred CCcEEEEcCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC-
Q psy9355 85 DARGIICGITEDT-TRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG- 162 (204)
Q Consensus 85 ~~~g~~~Gl~~~~-~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~- 162 (204)
++||.|+|++..| +++||+||++|||||++|+++|.|++ .|.++++|+++||++||++|+||+||++|+||.++...
T Consensus 381 ~arg~~~Gl~~~~~~~~~l~RAvlEgia~~~r~~l~~l~~-~g~~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~~~e 459 (515)
T 3i8b_A 381 NATATFSGMTLANTTRENLARAFVEGLLCSQRDCLELIRS-LGASITRILLIGGGAKSEAIRTLAPSILGMDVTRPATDE 459 (515)
T ss_dssp TCCCEEESCCTTTCSHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCCEEEEESGGGGCHHHHHHHHHHHTSCEEEECCCC
T ss_pred CcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCEEEEECchhcCHHHHHHHHHHhCCceEecCCcc
Confidence 9999999999999 99999999999999999999999987 68999999999999999999999999999999997752
Q ss_pred -Cc--------ccccccCCHHHHHHHhh-ccCeEeecCc--chhhhhhcc
Q psy9355 163 -GK--------DGGKYITDVSNASRTML-MNIETLEWDP--MLCGVWEIN 200 (204)
Q Consensus 163 -~a--------~g~g~~~~~~~a~~~~~-~~~~~~~P~~--~~~~~y~~~ 200 (204)
++ ++.|.+++.++ +. .....|+|++ +..+.|++-
T Consensus 460 ~~alGAA~lA~~a~G~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 505 (515)
T 3i8b_A 460 YVAIGAARQAAWVLSGETEPPA----WQLTIDGVETGEPTEAVYEAYAKA 505 (515)
T ss_dssp HHHHHHHHHHHHHHHCCSSCCC----CCCCEEEEECCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCChhH----hhhhccccCCCCccHHHHHHHHHH
Confidence 22 34566655542 22 2345566665 566677653
No 17
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=100.00 E-value=3.4e-34 Score=257.10 Aligned_cols=180 Identities=15% Similarity=0.026 Sum_probs=152.7
Q ss_pred eeeeeecCCCcceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcC-CCCCeEEecCCCCCCCCCCCCCCcEEEE
Q psy9355 13 TTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDARGIIC 91 (204)
Q Consensus 13 ~~~~~~~~~~p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~-~~~g~~~~P~l~G~r~P~~~~~~~g~~~ 91 (204)
..+++.++ ++.|+.+++++++|.+++|+++.++. .+|+++++++++.+ +++|++|+|||.|+|.|+ ++|.|+
T Consensus 321 ~~~~~~~~--~~~~~~~~~~~~gg~~~~w~~~~~~~-~~~~~l~~~a~~~~~g~~gl~~lp~~~Ger~P~----~~G~~~ 393 (538)
T 4bc3_A 321 HIFCNPVD--SQHYMALLCFKNGSLMREKIRNESVS-RSWSDFSKALQSTEMGNGGNLGFYFDVMEITPE----IIGRHR 393 (538)
T ss_dssp EEEEETTE--EEEEEEEEEESSSHHHHHHHHHHHST-TCHHHHHHHHHTSCTTGGGCEEEEESSCCSSSC----CCEEEE
T ss_pred ceEEeecC--CCCEEEeehhhccchHHHHHHHHhcC-CCHHHHHHHHhcCCCCCCCeEEeecCCCCcCCC----CCceee
Confidence 34666543 36799999999999999999998863 57999999999887 889999999999999996 455554
Q ss_pred ------cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC--C
Q psy9355 92 ------GITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG--G 163 (204)
Q Consensus 92 ------Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~--~ 163 (204)
|++ .|+++||+||++|||||++|++++.+++ .+.++++|+++||++||++|+||+||++|+||.++... +
T Consensus 394 ~~~~~~g~~-~~~~~~l~RAvlEgia~~~r~~~~~l~~-~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~e~~ 471 (538)
T 4bc3_A 394 FNTENHKVA-AFPGDVEVRALIEGQFMAKRIHAEGLGY-RVMSKTKILATGGASHNREILQVLADVFDAPVYVIDTANSA 471 (538)
T ss_dssp ECTTSCEES-CCCHHHHHHHHHHHHHHHHHHHHHHTTC-CCCTTCCEEEEEGGGGCHHHHHHHHHHHTSCEEECCCTTHH
T ss_pred ecccccccc-CCCHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCCeEEEEcchhcCHHHHHHHHHHhCCceEecCCCCch
Confidence 233 2899999999999999999999999976 57788999999999999999999999999999997653 1
Q ss_pred --------cccccc--cCCHHHHHHHhhccCeEeecCcchhhhhhccC
Q psy9355 164 --------KDGGKY--ITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201 (204)
Q Consensus 164 --------a~g~g~--~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~ 201 (204)
+++.|. |+|++++.+.|++..++|+|+++.++.|++.+
T Consensus 472 alGaA~lA~~a~G~~~~~~~~ea~~~~~~~~~~~~P~~~~~~~Y~~~y 519 (538)
T 4bc3_A 472 CVGSAYRAFHGLAGGTDVPFSEVVKLAPNPRLAATPSPGASQVYEALL 519 (538)
T ss_dssp HHHHHHHHHHHHHTGGGSCHHHHHTTSCCCEEEECCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCCHHHHHHhhcCCCeeECCCHHHHHHHHHHH
Confidence 245666 89999998888888899999999988888765
No 18
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=99.95 E-value=1.1e-27 Score=212.46 Aligned_cols=171 Identities=17% Similarity=0.232 Sum_probs=134.3
Q ss_pred CcceEEecchhhchhHHHHHHHHhcC---CCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCC-----CcEEEEcC
Q psy9355 22 EPVVYALEGSVAVAGAAMNWLRDNVG---MVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPD-----ARGIICGI 93 (204)
Q Consensus 22 ~p~~y~~~g~~~~~G~~~~W~~~~~~---~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~-----~~g~~~Gl 93 (204)
.|+.|.+++.+. | .|+++.+. ....++++.+.++..++.+ .+|+| ++.|+|+|+ .+|.+.|+
T Consensus 287 ~~~~~~~~~~~~--g---~W~~~~~~~~~~~~~~~~l~~~a~~~~~~~-~l~~p----~~~~~~~p~~~~~~~~g~~~g~ 356 (489)
T 2uyt_A 287 AEGRYRVLKNIM--G---LWLLQRVLQERQINDLPALIAATQALPACR-FIINP----NDDRFINPDEMCSEIQAACREM 356 (489)
T ss_dssp GGGCEEEEEEEC--T---THHHHHHHHHTTCCCHHHHHHHHTTSCSSS-SCCCT----TSGGGSSCSCHHHHHHHHHHHT
T ss_pred CCCeEEEehhHh--H---HHHHHHhhcccchhhHHHHHHHhccCCCcC-eeECC----CCCccCChhhhHHHHHHHHHhc
Confidence 378888888765 2 58877642 1245777777665555655 45788 577888887 47888888
Q ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC-Cc------
Q psy9355 94 --TEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG-GK------ 164 (204)
Q Consensus 94 --~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~-~a------ 164 (204)
+..|+++||+||++|||||++|+++|.|++..|.++++|+++||++||++|+||+||++|+||.++... ++
T Consensus 357 ~~~~~~t~~~l~RAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~~e~~alGaa~~ 436 (489)
T 2uyt_A 357 AQPIPESDAELARCIFDSLALLYADVLHELAQLRGEDFSQLHIVGGGCQNTLLNQLCADACGIRVIAGPVEASTLGNIGI 436 (489)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEESGGGGCHHHHHHHHHHHTSEEEECCTTHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCChhhhHHHHHHHHHHHCCeeecCCccHhHHHHHHH
Confidence 478999999999999999999999999987668889999999999999999999999999999986642 11
Q ss_pred -----ccccccCCHHHHHHHhhccCeEeecCcchh-hhhhccCCC
Q psy9355 165 -----DGGKYITDVSNASRTMLMNIETLEWDPMLC-GVWEINMQP 203 (204)
Q Consensus 165 -----~g~g~~~~~~~a~~~~~~~~~~~~P~~~~~-~~y~~~~~~ 203 (204)
.+.|.+++++++++.+.+ .++|+||++.+ +.|++.++.
T Consensus 437 A~~a~~~~~~~~~~~~~~~~~~~-~~~~~P~~~~~~~~Y~~~~~~ 480 (489)
T 2uyt_A 437 QLMTLDELNNVDDFRQVVSTTAN-LTTFTPNPDSEIAHYVALIHS 480 (489)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHSC-CEEECCCTTSHHHHHHHHTTC
T ss_pred HHHHcCccccHHHHHHHHHhhCC-CeEECCCcchHHHHHHHHHHH
Confidence 223445666677777755 58999999999 999887764
No 19
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=99.93 E-value=8e-27 Score=206.68 Aligned_cols=133 Identities=14% Similarity=0.082 Sum_probs=106.2
Q ss_pred EEecchhhchhHHHHHHHHhcCCCCC--HHHHHHHHHhc-CCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCCCCCHHHH
Q psy9355 26 YALEGSVAVAGAAMNWLRDNVGMVTG--VEEIESLAESH-RHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHI 102 (204)
Q Consensus 26 y~~~g~~~~~G~~~~W~~~~~~~~~~--~~~l~~~a~~~-~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~~~l 102 (204)
|.+++...++|.+++|+++..+...+ .+..+..++.. ++++|++|+|||.|+|+|+||+ ||+|+||+. .|+
T Consensus 291 ~~~~g~~~~~G~~~~w~~~~~~~~~~~~~~~~~~~a~~~~~g~~Gl~flP~l~Ger~P~~d~--rG~~~Gl~~----~~l 364 (482)
T 3h6e_A 291 RPVPSARFMGGREIETLIEIDTRRVDIKPDQPALLAAVPEVLRHGRMILPTLMRGFGPYPHG--RFAWINRPE----DWF 364 (482)
T ss_dssp CEEEEEEECHHHHHHHHHCSGGGCTTCGGGHHHHHHTHHHHHHTTCEEESCSSTTCSSCTTC--CCEEESCCS----SHH
T ss_pred ccccchhhhhHHHHHHHHHhcccccccccchhhHHHhccccCCCCeEEecCCCCCCCCCCCC--ceEEeCCCH----HHH
Confidence 45677788899999999754432211 22223223322 3788999999999999999987 999999997 799
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhh-hCCcEEeccCC--Ccccccc
Q psy9355 103 VRAALEA--ICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADL-CGIPVGKNLTG--GKDGGKY 169 (204)
Q Consensus 103 ~rAvlEg--ia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv-~g~pv~~~~~~--~a~g~g~ 169 (204)
+||++|| |||++|+++|.|++ .++|+++||++||++|+||+||+ +|+||.+++.. +++|+.+
T Consensus 365 ~RA~lE~~Gia~~~r~~l~~~~~-----~~~i~~~GG~a~s~~w~Qi~ADv~~g~pV~~~~~~e~~alGAA~ 431 (482)
T 3h6e_A 365 ERRAAACLYAALVADTALDLIGS-----TGRILVEGRFAEADVFVRALASLRPDCAVYTANAHNDVSFGALR 431 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-----CSEEEEESGGGGCHHHHHHHHHHSTTSEEEEESSCCCTTGGGHH
T ss_pred HHHHHHHHhHHHHHHHHHHHhcC-----CCeEEEeCCcccCHHHHHHHhhhcCCCeEEEcCCCchHHHHHHH
Confidence 9999995 99999999998864 27899999999999999999999 99999999863 4555443
No 20
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=99.41 E-value=1.7e-13 Score=112.69 Aligned_cols=122 Identities=12% Similarity=0.158 Sum_probs=94.4
Q ss_pred hhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCC-CCCCHHHHHHHHHHH
Q psy9355 31 SVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGIT-EDTTRGHIVRAALEA 109 (204)
Q Consensus 31 ~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~-~~~~~~~l~rAvlEg 109 (204)
+...+|..++|+.+.++. +++++++++.+.+ .|+..+.|.+. .+++.++++. ..|+++|++|+++|+
T Consensus 127 ca~GtG~~le~~a~~lg~--~~~el~~la~~~~-------~p~~~~~~c~v---fa~s~v~~l~~~g~~~~di~~av~e~ 194 (270)
T 1hux_A 127 CAAGTGRFLDVMANILEV--KVSDLAELGAKST-------KRVAISSTCTV---FAESEVISQLSKGTDKIDIIAGIHRS 194 (270)
T ss_dssp CCTTSHHHHHHHHHHHTC--CTTTHHHHHTTCC-------SCCCCCCCSHH---HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHhCC--CHHHHHHHHhhCC-------CCCCcccccch---hHhHHHHHHhhCCCCHHHHHHHHHHH
Confidence 444567899999999875 5788888876532 46777777763 3566677775 678999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC---Ccccccc
Q psy9355 110 ICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG---GKDGGKY 169 (204)
Q Consensus 110 ia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---~a~g~g~ 169 (204)
|++.+. +.++. .+. .++|+++||+++|+.|+|+++|++|+||.+|+.. +++|+.+
T Consensus 195 Va~~i~---~~~~~-~~~-~~~i~~~GG~a~n~~~~~~~~~~lg~~v~~p~~~~~~~AlGAAl 252 (270)
T 1hux_A 195 VASRVI---GLANR-VGI-VKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAAL 252 (270)
T ss_dssp HHHHHH---HHHHT-TCC-CSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHH
T ss_pred HHHHHH---HHHhc-CCC-CCeEEEeCccccCHHHHHHHHHHHCCCeEeCCCcchHhHHHHHH
Confidence 999974 33433 233 4789999999999999999999999999998863 3555544
No 21
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=97.81 E-value=0.00026 Score=58.30 Aligned_cols=142 Identities=15% Similarity=0.045 Sum_probs=87.6
Q ss_pred cceEEecc-hhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CCCeEEecCCCCCCCCCCCCCCcEEEEcC-----CC
Q psy9355 23 PVVYALEG-SVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH-TGDVYFVPAFSGLYAPYWQPDARGIICGI-----TE 95 (204)
Q Consensus 23 p~~y~~~g-~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~-~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl-----~~ 95 (204)
++.|...+ +...+|.-++-.+..++. .+++++.++|.+... .-+ +.+-.+.|...+.-..+...+.+|- ..
T Consensus 128 ~~~f~r~~g~aaGgGtFl~l~a~ll~~-~~~~el~~lA~~g~~~~vD-l~v~DIy~~~~~~l~~~s~as~Fgk~~~l~~~ 205 (287)
T 2ews_A 128 GQSQRRVGGIGTGGGMIQGLGYLLSQI-TDYKQLTDMAQHGDRNTID-LKVRHIYKDTEPPIPGDLTAANFGHVLHHLDA 205 (287)
T ss_dssp SSCEEEEEEESCSHHHHHHHHHHHHCC-CCHHHHHHHHTTCCCTTTC-EETTTC-------CCTTSEEETTTTGGGCTTS
T ss_pred CCceEEcCccccchhhHHHHHHHHhCC-CCHHHHHHHHHcCCccccc-cchhhhcCCCCCCcCcchhhHHHHHHHHHHhC
Confidence 34565444 444455566666666663 489999999865321 111 2222222211111223334443332 33
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecC-ccccHHHHHHHHhh---hCCcEEeccCC---Cccccc
Q psy9355 96 DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGG-MTANKHLMQTQADL---CGIPVGKNLTG---GKDGGK 168 (204)
Q Consensus 96 ~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GG-ga~s~~~~Qi~Adv---~g~pv~~~~~~---~a~g~g 168 (204)
..+++|++++++.+|+..+........+. .++++|+.+|| .+.|+.+++.+.+. .+.++.+|+.. +|+|+.
T Consensus 206 g~~~eDIaasl~~sV~~~I~~la~~~a~~--~~i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlGAa 283 (287)
T 2ews_A 206 DFTPSNKLAAVIGVVGEVVTTMAITVARE--FKTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGAL 283 (287)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHHHH
Confidence 56899999999999988877665543332 34557999999 89999999999998 58999998875 445543
No 22
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=97.66 E-value=0.00018 Score=61.03 Aligned_cols=142 Identities=17% Similarity=0.057 Sum_probs=91.6
Q ss_pred cceEEecchhhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCC-CCCeEEecCCCCCCCC--CCCCCCcEEEEcCC-----
Q psy9355 23 PVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH-TGDVYFVPAFSGLYAP--YWQPDARGIICGIT----- 94 (204)
Q Consensus 23 p~~y~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~-~~g~~~~P~l~G~r~P--~~~~~~~g~~~Gl~----- 94 (204)
++.|...++...||+.+-=+...+-...+++++.++|++-.. .-.+ .+=+..|...+ .-..+...+-+|-.
T Consensus 194 ~~~f~rvgG~siGGGTflGL~~lLtg~~~~dEl~~lA~~Gd~~~vDl-lV~DIYg~~y~~~gL~~~~~ASsFGk~~~~~~ 272 (360)
T 2i7n_A 194 KDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALEMAAKGDSTNVDK-LVKDIYGGDYERFGLQGSAVASSFGNMMSKEK 272 (360)
T ss_dssp TTEEEEEEEESCSHHHHHHHHHHHHCCCSHHHHHHHHHHCCGGGTSE-EHHHHHSSCBGGGTBCTTSEEETTTTTTSHHH
T ss_pred CCCEEEeccccCccHhHHHHHHHHhCCCCHHHHHHHHHcCCCCcccc-eeeecccCcccccCCCccceeehhhhHhhHhh
Confidence 456776666666666544444344223689999999976431 1122 22333332211 12344555555544
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecC-ccccHHHHHHHHhhhC------CcEEeccCC---C
Q psy9355 95 -EDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGG-MTANKHLMQTQADLCG------IPVGKNLTG---G 163 (204)
Q Consensus 95 -~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GG-ga~s~~~~Qi~Adv~g------~pv~~~~~~---~ 163 (204)
...+++|++++++.+|+..+..+.-...+..+. ++|+++|| .++|+..++.++..++ +++.+++.. +
T Consensus 273 ~~~~~~eDIa~gll~sVa~~I~~lA~l~A~~~~i--~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~G 350 (360)
T 2i7n_A 273 RDSISKEDLARATLVTITNNIGSIARMCALNENI--DRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFG 350 (360)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--CCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHH
Confidence 246799999999999999988775433333344 47999999 9999999999999985 788888874 3
Q ss_pred cccc
Q psy9355 164 KDGG 167 (204)
Q Consensus 164 a~g~ 167 (204)
|+|+
T Consensus 351 AlGA 354 (360)
T 2i7n_A 351 AVGA 354 (360)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 23
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=97.14 E-value=0.00052 Score=55.55 Aligned_cols=123 Identities=13% Similarity=0.162 Sum_probs=76.7
Q ss_pred hhchhHHHHHHHHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q psy9355 32 VAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAIC 111 (204)
Q Consensus 32 ~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~~~l~rAvlEgia 111 (204)
...+|..++-+.+.+++ +|++..+++....... | + ..+...+. ....+.=+....+++++++++.+.|+
T Consensus 126 ~~g~G~f~d~~a~~l~~--~~~~~~~~~~~a~~~~-----~-i-~~~~~~f~--~s~~~~~~~~~~~~~di~a~~~~~v~ 194 (276)
T 4ehu_A 126 AAGTGRFLDVMAKIIEV--DVSELGSISMNSQNEV-----S-I-SSTCTVFA--ESEVISHLSENAKIEDIVAGIHTSVA 194 (276)
T ss_dssp STTSHHHHHHHHHHHTC--CGGGHHHHHTTCSSCC-----C-C-CCCSHHHH--HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHhcc--ChhhhHHHHhcCCCCC-----C-c-CCccchhh--hhHHHHhhhccccHHHHHHHHHHHHH
Confidence 34456677777777775 5777776665432110 1 1 11110000 00000011234578999999999987
Q ss_pred HHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccCC---Cccccccc
Q psy9355 112 FQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG---GKDGGKYI 170 (204)
Q Consensus 112 ~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---~a~g~g~~ 170 (204)
-.+... ..+. ...++|+++||.++|+.+.+.+++.+|+++.+|+.. +|+|+.++
T Consensus 195 ~~l~~~---~~~~--~~~~~vvl~GGva~n~~lr~~l~~~~g~~~~~p~~p~~~~A~GAAl~ 251 (276)
T 4ehu_A 195 KRVSSL---VKRI--GVQRNVVMVGGVARNSGIVRAMAREINTEIIVPDIPQLTGALGAALY 251 (276)
T ss_dssp HHHHHH---HHHH--CCCSSEEEESGGGGCHHHHHHHHHHHTSCEECCSSGGGHHHHHHHHH
T ss_pred HHHHHH---HHhc--ccCCeEEEecCccchHHHHHHHHHHHCCCeeeCCCcchHHHHHHHHH
Confidence 665543 3232 246789999999999999999999999999998874 45666554
No 24
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=97.00 E-value=0.0008 Score=54.12 Aligned_cols=100 Identities=13% Similarity=0.200 Sum_probs=67.2
Q ss_pred ceEEecchhhchhHHHHHH-HHhcCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCCCCCCHHHH
Q psy9355 24 VVYALEGSVAVAGAAMNWL-RDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHI 102 (204)
Q Consensus 24 ~~y~~~g~~~~~G~~~~W~-~~~~~~~~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~~~~~~~~l 102 (204)
|..........||..+.+. .+.+.. ++++.+++.... + ......++
T Consensus 159 g~~~~~~~~~~Gg~~~~~~l~~~l~~--~~~~ae~~k~~~-~------------------------------~~~~~~~~ 205 (272)
T 3h1q_A 159 GKITATFDEPTGGTHLSLVLAGSYKI--PFEEAETIKKDF-S------------------------------RHREIMRV 205 (272)
T ss_dssp TEEEEECCBSCCHHHHHHHHHHHHTC--CHHHHHHHHHSS-T------------------------------THHHHHHH
T ss_pred CEEEEEecCCCcHHHHHHHHHHHhCC--CHHHHHHHHHhc-C------------------------------CHHHHHHH
Confidence 4455556677788777664 344443 455555544321 1 12334667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 103 VRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 103 ~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
++.+++.++..++..++. .+ .++.|+++||+++++.+.+++.+.++.||.++..
T Consensus 206 ~~~~~~~i~~~i~~~l~~----~~-~~~~ivL~GG~a~~~~l~~~l~~~l~~~v~~~~~ 259 (272)
T 3h1q_A 206 VRPVIEKMALIVKEVIKN----YD-QTLPVYVVGGTAYLTGFSEEFSRFLGKEVQVPIH 259 (272)
T ss_dssp HHHHHHHHHHHHHHHTTT----SC-SSCCEEEESGGGGSTTHHHHHHHHHSSCCBCCSS
T ss_pred HHHHHHHHHHHHHHHHHh----cC-CCCEEEEECCccchhhHHHHHHHHhCCCccccCC
Confidence 778888777666554432 22 3679999999999999999999999999987665
No 25
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=96.99 E-value=0.0037 Score=53.03 Aligned_cols=61 Identities=21% Similarity=0.091 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhC-CcEEeccC
Q psy9355 97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCG-IPVGKNLT 161 (204)
Q Consensus 97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g-~pv~~~~~ 161 (204)
.+++|+.+-+.|=.|-++.+.++.+ ..++++|+++|||++|+.+++.++..+. .+|...+.
T Consensus 256 ls~~Dv~ATLt~~TA~sIa~~~~~~----~~~~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~~d~ 317 (371)
T 3qbx_A 256 LPAADIQATLLELSARSISESLLDA----QPDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDE 317 (371)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH----CTTCCEEEEESGGGGCHHHHHHHHHHCTTSEEEEGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhc----cCCCceEEEECCccCcHHHHHHHHHhCCCCEEeCHHH
Confidence 4789999999888877777766543 2346899999999999999999999984 77766554
No 26
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=96.74 E-value=0.006 Score=51.74 Aligned_cols=57 Identities=26% Similarity=0.295 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh-CCcEEec
Q psy9355 98 TRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC-GIPVGKN 159 (204)
Q Consensus 98 ~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~-g~pv~~~ 159 (204)
+++|+.+-+.|=.|-++.+.++.+ . ..++|+++|||++|+.+++.++..+ +.+|...
T Consensus 264 ~~~Dv~ATLt~~TA~sIa~~~~~~----~-~~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~t 321 (370)
T 3cqy_A 264 NEEDIQSTLLDLTCHSIAQDILKL----A-QEGELFVCGGGAFNAELMQRLAALLPGYRIDTT 321 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH----C-SSEEEEEESGGGGCHHHHHHHHHHCTTEEEEEG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhc----C-CCCEEEEECCCcCCHHHHHHHHHhCCCCeeeeH
Confidence 689999999997777777766544 2 4569999999999999999999999 4455443
No 27
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=95.70 E-value=0.044 Score=45.77 Aligned_cols=125 Identities=19% Similarity=0.171 Sum_probs=80.9
Q ss_pred ceEEecch--hhchhHHHHHHHHhcCCCCC-HHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcC-------
Q psy9355 24 VVYALEGS--VAVAGAAMNWLRDNVGMVTG-VEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGI------- 93 (204)
Q Consensus 24 ~~y~~~g~--~~~~G~~~~W~~~~~~~~~~-~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl------- 93 (204)
+.|-+.+. -.+.|..++-+...+|+... -..++.+|... .. .+-+|+. .....=+|.|+
T Consensus 147 ~~~~~lg~t~d~S~G~~fD~vA~~LGl~y~g~~~le~lA~~g--~~-~~~~~~~--------~~~~~~sfsgl~~~v~~~ 215 (334)
T 3eno_A 147 GRYRVLGETLDIGIGNMIDKFAREAGIPFPGGPEIEKLAMKG--TK-LLDLPYS--------VKGMDTAFSGILTAALQY 215 (334)
T ss_dssp SBEEEEEEBSSCCHHHHHHHHHTTTTCCSCHHHHHHTTGGGC--CS-CCCCCCC--------EETTEECCHHHHHHHHHH
T ss_pred CEEEEeccCCCccHHHHHHHHHHHcCCCCCCHHHHHHHHhcC--CC-CCCCcee--------ccCceEchHHHHHHHHHH
Confidence 44543333 46789999999988886311 13566655432 11 1112221 00001112221
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEeccC
Q psy9355 94 -TEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNLT 161 (204)
Q Consensus 94 -~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~~ 161 (204)
.....++++++++.+.++-.+.+.++...+..+ .++|.++||.+.|..+++.+.+.+ |.+|.+++.
T Consensus 216 l~~g~~~~diAasfq~~l~~~l~~~~~~a~~~~g--~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~~ 285 (334)
T 3eno_A 216 LKTGQAIEDISYSIQETAFAMLVEVLERALYVSG--KDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDR 285 (334)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCT
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecCC
Confidence 112468899999999999888888777655454 579999999999999999999988 889988775
No 28
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=95.64 E-value=0.046 Score=45.50 Aligned_cols=126 Identities=16% Similarity=0.099 Sum_probs=82.3
Q ss_pred cceEEecch--hhchhHHHHHHHHhcCCCCC-HHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcC------
Q psy9355 23 PVVYALEGS--VAVAGAAMNWLRDNVGMVTG-VEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGI------ 93 (204)
Q Consensus 23 p~~y~~~g~--~~~~G~~~~W~~~~~~~~~~-~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl------ 93 (204)
.+.|-..|. -.+.|..++-+...+++... -..++++|... .. .+-+|+.. .+..=+|.|+
T Consensus 140 ~~~~~~lg~t~dds~Gr~fD~vA~~LGl~~~~~~~le~lA~~g--~~-~~~~p~~i--------~~~~fsfs~l~~~v~~ 208 (330)
T 2ivn_A 140 GGRYRVFGETLDIGIGNAIDVFARELGLGFPGGPKVEKLAEKG--EK-YIELPYAV--------KGMDLSFSGLLTEAIR 208 (330)
T ss_dssp TTEEEEEEEBSSSCHHHHHHHHHHHHTCCSCHHHHHHHHHHTC--CS-CCCCCCCE--------ETTEECCHHHHHHHHH
T ss_pred CCeEEEEEeecCchhHHHHHHHHHHhCCCCCcHHHHHHHhhcC--CC-cCCCCccc--------CCCeEehHHHHHHHHH
Confidence 355655433 23689999999999987322 13677777642 11 11123211 0000011121
Q ss_pred --CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEeccC
Q psy9355 94 --TED-TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNLT 161 (204)
Q Consensus 94 --~~~-~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~~ 161 (204)
... .+++++++++.+.++-.+....+...+.++ .++|.++||.+.|..+++.+.+.+ |.+|.+++.
T Consensus 209 ~~~~g~~~~~diAa~fq~~l~~~l~~~~~~~~~~~~--~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~ 280 (330)
T 2ivn_A 209 KYRSGKYRVEDLAYSFQETAFAALVEVTERAVAHTE--KDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPY 280 (330)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCC
Confidence 111 468999999999999888888877765443 578999999999999999999887 788888774
No 29
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=95.56 E-value=0.028 Score=47.18 Aligned_cols=63 Identities=16% Similarity=0.069 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355 98 TRGHIVRAALEAICFQTRDILEAMKKDC-GIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL 160 (204)
Q Consensus 98 ~~~~l~rAvlEgia~~~~~~~e~l~~~~-g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~ 160 (204)
.-.++++..++.+.-.+++.++.+.... ...++.|+++||+++.+.+.+++++.+++|+.+..
T Consensus 275 ~~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~~~v~~~~ 338 (377)
T 2ych_A 275 RIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLGVNLEPVN 338 (377)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHTSEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhCCCeEecC
Confidence 3566788899999998988888764222 34689999999999999999999999999998863
No 30
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=95.38 E-value=0.023 Score=48.92 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCcceEEEecCccccHHHHHHHHhhhCCcEEecc
Q psy9355 99 RGHIVRAALEAICFQTRDILEAMKKD-----CGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNL 160 (204)
Q Consensus 99 ~~~l~rAvlEgia~~~~~~~e~l~~~-----~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~ 160 (204)
-.++++..+|-+.-.+++.++...-. ....++.|+++||+|+-+.+.+++++.||+||.+..
T Consensus 294 l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~~vri~~ 360 (419)
T 4a2a_A 294 LSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGC 360 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTSCEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCCCeEEEe
Confidence 45677888888888888777665310 123467899999999999999999999999998765
No 31
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=95.08 E-value=0.011 Score=49.91 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 101 HIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 101 ~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
++++..++.+.-.+++.++... .....++.|+++||+++.|.+.+.+.+.++.++..+..
T Consensus 307 ~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~ 366 (383)
T 1dkg_D 307 SLVEDLVNRSIELLKVALQDAG-LSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVN 366 (383)
T ss_dssp HHSHHHHHHHHHHHHHHHHTTT-CCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCHhhCCEEEEecCccccHHHHHHHHHHhCCCCCCCcC
Confidence 3455556655544444443321 11135689999999999999999999999998876554
No 32
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=94.98 E-value=0.035 Score=46.73 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh-CCcEEeccC
Q psy9355 99 RGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC-GIPVGKNLT 161 (204)
Q Consensus 99 ~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~-g~pv~~~~~ 161 (204)
-+++++..++.+.-.+++.++.... ....++.|+++||+++.+.+.+++.+.+ +++|..+.+
T Consensus 315 ~~~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~ 377 (394)
T 3qfu_A 315 FEELNLDLFKKTLKPVEKVLQDSGL-EKKDVDDIVLVGGSTRIPKVQQLLESYFDGKKASKGIN 377 (394)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTC-CGGGCCEEEEESGGGGSHHHHHHHHHHTTTCCCBCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CHHHCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcC
Confidence 3456677777777666666654321 1235789999999999999999999999 898877654
No 33
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=94.93 E-value=0.1 Score=47.50 Aligned_cols=122 Identities=13% Similarity=0.054 Sum_probs=80.9
Q ss_pred hhchhHHHHHHHHhcCCC-C--CHH-----HHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcC-CCCCCHHHH
Q psy9355 32 VAVAGAAMNWLRDNVGMV-T--GVE-----EIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGI-TEDTTRGHI 102 (204)
Q Consensus 32 ~~~~G~~~~W~~~~~~~~-~--~~~-----~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl-~~~~~~~~l 102 (204)
+++.|..++=+...+|+. . +|+ +||++|..... ..+=+|+-. .....| .++.+..+ ....+++++
T Consensus 502 tSS~GRLFDavAalLGl~~~~~~YEGqaA~~LEalA~~~~~--~~~~lp~~i--~~~~ld--~s~l~~~ll~~g~~~~dI 575 (657)
T 3ttc_A 502 ASSCGRLFDAVAAALGCAPATLSYEGEAACALEALAASCDG--VTHPVTMPR--VDNQLD--LATFWQQWLNWQAPVNQR 575 (657)
T ss_dssp EEEHHHHHHHHHHHHTCSCSSCSSTTHHHHHHHHHHHTCCC--CCCCCCCCE--ETTEEC--HHHHHHHHHTCCCCHHHH
T ss_pred cCccchHHHHHHHHcCCCCccCccCchhHHHHHHHHhhCCC--ccCCceeec--cCCccc--HHHHHHHHHHcCCCHHHH
Confidence 567899999988888864 2 243 47777764321 111012210 000011 11211111 123578999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh-CCcEEeccC
Q psy9355 103 VRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC-GIPVGKNLT 161 (204)
Q Consensus 103 ~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~-g~pv~~~~~ 161 (204)
.+++.++++-.+....+.+.+.+ .+++|.++||.++|..+++.+.+.+ |.+|..++.
T Consensus 576 AasFh~ala~~L~~~~~ra~~~~--g~~~VvLsGGV~~N~~Lre~L~~~l~g~~v~~p~~ 633 (657)
T 3ttc_A 576 AWAFHDALAQGFAALMREQATMR--GITTLVFSGGVIHNRLLRARLAHYLADFTLLFPQS 633 (657)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--TCCEEEEESGGGGCHHHHHHHHHHTTTSEEECCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEECcHHHHHHHHHHHHHHhCCCEEEecCC
Confidence 99999999999998888776544 4679999999999999999999998 888888765
No 34
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=94.63 E-value=0.031 Score=50.43 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 99 RGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 99 ~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
-+++++.+++.+.-.+++.++...- ....++.|+++||+++.|.+.+++.+.+|+++....+
T Consensus 305 ~e~l~~~~~~~i~~~v~~~L~~a~~-~~~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~n 366 (605)
T 4b9q_A 305 LESLVEDLVNRSIEPLKVALQDAGL-SVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVN 366 (605)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTTC-CGGGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CHHHCcEEEEeCCccCchHHHHHHHHHhccCcCCCcC
Confidence 4567788888887777776654321 1235789999999999999999999999999876544
No 35
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=94.60 E-value=0.04 Score=46.62 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh-CCcEEeccC
Q psy9355 100 GHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC-GIPVGKNLT 161 (204)
Q Consensus 100 ~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~-g~pv~~~~~ 161 (204)
.++++.+++.+.-.+++.++.... ....++.|+++||+++.|.+.+++.+.+ +.+|..+.+
T Consensus 324 ~~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~ 385 (404)
T 3i33_A 324 EELNADLFRGTLEPVEKALRDAKL-DKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSIN 385 (404)
T ss_dssp HHHTHHHHHHTHHHHHHHHHHHTC-CGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcC
Confidence 445566677666666666554321 1235788999999999999999999999 888876654
No 36
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=94.54 E-value=0.042 Score=46.70 Aligned_cols=58 Identities=9% Similarity=0.069 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEe
Q psy9355 100 GHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158 (204)
Q Consensus 100 ~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~ 158 (204)
+++++.+++.+.-.+++.++... .....++.|+++||+++.|.+.+++.+.++.++.+
T Consensus 317 ~~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v 374 (409)
T 4gni_A 317 ETIARTVFEGFNRLVESAVKKAG-LDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRI 374 (409)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHTT-CCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCHHHCCEEEEECCccccHHHHHHHHHHcCCcccc
Confidence 34556666666655555554331 11134689999999999999999999999988544
No 37
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=93.56 E-value=0.29 Score=45.33 Aligned_cols=64 Identities=20% Similarity=0.272 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEeccC
Q psy9355 96 DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNLT 161 (204)
Q Consensus 96 ~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~~ 161 (204)
..+++++++++.++++-.+.+....+.+.+| .++|.++||.++|..+++.+.+.+ |.++..++.
T Consensus 663 g~~~~dIAasFq~ala~~L~~~~~~a~~~~g--~~~VvLsGGVa~N~~Lr~~L~~~l~~~g~~v~~p~~ 729 (761)
T 3vth_A 663 GFEKSYISAKFHNTVVNFTYDLANLIRKETG--INKVVLSGGSFQNRYLLRRLIEKLSLSGFEVYSNSK 729 (761)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCEEEEESGGGGSHHHHHHHHHHHHHTTCEEEECSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCEEEEECcHHHHHHHHHHHHHHHHhCCCEEEecCC
Confidence 3578899999999999988888877665554 578999999999999999998886 889988764
No 38
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=93.10 E-value=0.33 Score=42.90 Aligned_cols=125 Identities=17% Similarity=0.167 Sum_probs=82.2
Q ss_pred ceEEecch--hhchhHHHHHHHHhcCCC-CCHHHHHHHHHhcCCCCCeEEecCCCCCCCCCCCCCCcEEEEcCC------
Q psy9355 24 VVYALEGS--VAVAGAAMNWLRDNVGMV-TGVEEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGIT------ 94 (204)
Q Consensus 24 ~~y~~~g~--~~~~G~~~~W~~~~~~~~-~~~~~l~~~a~~~~~~~g~~~~P~l~G~r~P~~~~~~~g~~~Gl~------ 94 (204)
+.|-..|. -.+.|..++-+...+|+. ..-..++++|+... ..+-+|+- .....-+|.|+.
T Consensus 146 ~~~~~lg~t~d~s~G~~~D~~a~~lgl~~~gg~~ie~lA~~g~---~~~~~p~~--------~~~~~~sfsgl~~~~~~~ 214 (540)
T 3en9_A 146 KKYRVFGETLDIAVGNCLDQFARYVNLPHPGGPYIEELARKGK---KLVDLPYT--------VKGMDIAFSGLLTAAMRA 214 (540)
T ss_dssp TEEEEEEEBSSSCHHHHHHHHHHHTTCCSSCHHHHHHHHHTCC---CCCCCCCC--------EETTEECCHHHHHHHHHH
T ss_pred CceEEEeeccchHhHHHHHHHHHHcCCCCCCHHHHHHHHHcCC---ccCcCCCC--------CCCcceecHHHHHHHHHH
Confidence 34443333 356899999999998873 12257888886432 11112321 111122333332
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEeccC
Q psy9355 95 --EDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNLT 161 (204)
Q Consensus 95 --~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~~ 161 (204)
...+++++++++-+.++-.+.+..+...+.++ .++|.++||.+.|..+++.+.+.+ |.++..|+.
T Consensus 215 ~~~~~~~~~ia~~fq~~~~~~l~~~~~~a~~~~~--~~~~~~~GGVa~N~~l~~~l~~~~~~~~~~~~~p~~ 284 (540)
T 3en9_A 215 YDAGERLEDICYSLQEYAFSMLTEITERALAHTN--KGEVMLVGGVAANNRLREMLKAMCEGQNVDFYVPPK 284 (540)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSEEEEESGGGGCHHHHHHHHHHHHHTTCEEECCCH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEeCcHHhHHHHHHHHHHHHHhcCCEEEeCCC
Confidence 12468899999999988888777766655454 579999999999999999998876 678888764
No 39
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=92.10 E-value=0.15 Score=44.72 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 100 GHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 100 ~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
.++++.+++.+.-.+++.++... .....++.|+++||+++.|.+.+.+.+.+++++..+.+
T Consensus 275 e~l~~~~~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~ 335 (509)
T 2v7y_A 275 EELSAHLVERTMGPVRQALQDAG-LTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVN 335 (509)
T ss_dssp HHHTHHHHHTTHHHHHHHHHHHT-CCGGGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CChhHCcEEEEECCcccChHHHHHHHHHhCCCcCcCCC
Confidence 34556666666555555554432 11135789999999999999999999999988766554
No 40
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=91.98 E-value=0.062 Score=44.45 Aligned_cols=71 Identities=18% Similarity=0.164 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-c-ceEEEecCccccHHHHHHHHhhhCCcEEeccCC---CcccccccC
Q psy9355 101 HIVRAALEAICFQTRDILEAMKKDCGIQ-L-IKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG---GKDGGKYIT 171 (204)
Q Consensus 101 ~l~rAvlEgia~~~~~~~e~l~~~~g~~-~-~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~---~a~g~g~~~ 171 (204)
++++..++.+.-.+++.++........+ + +.|+++||+++.+.+.+.+.+.++.+|.++.+. .+.|+.++.
T Consensus 248 ~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a 323 (344)
T 1jce_A 248 EALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVL 323 (344)
T ss_dssp HHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHHHHHHHH
Confidence 3445555555554544443221000001 2 589999999999999999999999999886552 344555543
No 41
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=91.26 E-value=0.23 Score=45.41 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 100 GHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 100 ~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
.++++.+++.+.-.++..++... .....++.|+++||+++.|.+.+++.+.+|+++....+
T Consensus 307 e~l~~~l~~~i~~~i~~~L~~a~-l~~~~I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~n 367 (675)
T 3d2f_A 307 EELVKPLLERVTEPVTKALAQAK-LSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLN 367 (675)
T ss_dssp HHHTHHHHTTTTHHHHHHHHHHT-CCGGGCCEEEEESGGGGSHHHHHHHHHHHTSCEECCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CChhhCcEEEEECCCccChHHHHHHHHhcCCCccccCC
Confidence 34556666666655555554431 11125789999999999999999999999999876554
No 42
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*
Probab=89.24 E-value=1 Score=40.27 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCC-cEEecc
Q psy9355 98 TRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGI-PVGKNL 160 (204)
Q Consensus 98 ~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~-pv~~~~ 160 (204)
...++++++-+.++-.+.+....+.+.+| .++|.++||.+.|..+++.+.+..+. .+.++.
T Consensus 279 ~~~dIAasfQ~~l~~~L~~~~~~a~~~tg--~~~l~LaGGVa~N~~L~~~l~~~~~~~~v~vpp 340 (576)
T 3ven_A 279 EYRDLAATAQAALERAVFGLADSVLARTG--ERTLFVAGGVGLNATMNGKLLTRSTVDKMFVPP 340 (576)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSEEEEESGGGGCHHHHHHHHTSTTCSEEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCeEEecchHHHHHHHHHHHHHhcCCCeEEeCC
Confidence 47899999998888888888777666554 68999999999999999999887775 666654
No 43
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=89.05 E-value=0.37 Score=42.86 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhC-CcEEeccC
Q psy9355 101 HIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCG-IPVGKNLT 161 (204)
Q Consensus 101 ~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g-~pv~~~~~ 161 (204)
+++..+++.+.-.+++.++... .....++.|+++||+++.|.+.+.+.+.++ +++..+.+
T Consensus 304 ~l~~~~~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~n 364 (554)
T 1yuw_A 304 ELNADLFRGTLDPVEKALRDAK-LDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSIN 364 (554)
T ss_dssp HHTHHHHHHTTHHHHHHHHHTT-CCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCC
Confidence 4555566655555555444321 111357899999999999999999999996 77765544
No 44
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=88.57 E-value=0.92 Score=42.09 Aligned_cols=62 Identities=11% Similarity=0.159 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh---CCcEEecc
Q psy9355 97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC---GIPVGKNL 160 (204)
Q Consensus 97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~---g~pv~~~~ 160 (204)
.++.++++++-+.++-.+.+.+..+.+.+ ..++|.++||.+.|.++++.+.+.+ |.+|.++.
T Consensus 676 ~~~~dIAasfQ~al~~~L~~~~~~a~~~t--g~~~VvLSGGVa~N~~L~~~l~~~L~~~G~~v~~p~ 740 (772)
T 4g9i_A 676 ASPADIAYSAHLALARAFAHTAVERAREF--GVKNVALSGGVAYNELITKMIRKVVEANGLNFHVTT 740 (772)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTT--TCSCCCEESSTTCCHHHHHHHHHHGGGSSCCCCCCT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcCEEEEEchHHHHHHHHHHHHHHHHHCCCEEEccC
Confidence 46788888888888888777777776644 4689999999999999999998875 56777654
No 45
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=84.90 E-value=0.2 Score=45.09 Aligned_cols=56 Identities=13% Similarity=0.069 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 105 AALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 105 AvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
.+++.+.-.+++.++... .....++.|+++||+++.|.+.+++.+.+|+++....+
T Consensus 311 ~~~~~i~~~i~~~L~~a~-~~~~~i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~n 366 (605)
T 2kho_A 311 DLVNRSIEPLKVALQDAG-LSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVN 366 (605)
T ss_dssp STTGGGTSHHHHHHHTTT-CCTTTCSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSC
T ss_pred HHHHHHHHHHHHHHHHcC-CChhhCceEEEECCcccChHHHHHHHHhcCCCcCcCCC
Confidence 344444444444443321 11235789999999999999999999999998766544
No 46
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=82.27 E-value=1.9 Score=35.11 Aligned_cols=32 Identities=16% Similarity=0.049 Sum_probs=26.4
Q ss_pred CcceEEEecCccccHHHHHHHHhhhCC---cEEeccC
Q psy9355 128 QLIKLQVDGGMTANKHLMQTQADLCGI---PVGKNLT 161 (204)
Q Consensus 128 ~~~~I~~~GGga~s~~~~Qi~Adv~g~---pv~~~~~ 161 (204)
.++.|+++||+|+- +.+.+.+.++. ++.++..
T Consensus 272 ~~~~vvl~GGga~l--l~~~l~~~~~~~~~~~~~~~~ 306 (320)
T 2zgy_A 272 GYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNN 306 (320)
T ss_dssp CCCEEEEESTTHHH--HHHHHHHTSCCCGGGEECCSC
T ss_pred CCCeEEEECChHHH--HHHHHHHHhCCCCCceeeCCC
Confidence 56899999999975 88999999998 5766554
No 47
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=78.97 E-value=5.5 Score=32.66 Aligned_cols=58 Identities=14% Similarity=0.089 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cceEEEecCccccHHHHHHHHhhhCCcEEeccC
Q psy9355 100 GHIVRAALEAICFQTRDILEAMKKDCGIQ-LIKLQVDGGMTANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 100 ~~l~rAvlEgia~~~~~~~e~l~~~~g~~-~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
.+.++..++-++-.+...+... + +..+ .+.|+++||||.- +.+.+.+.++.++.++++
T Consensus 251 ~~~i~~~~~e~~~~I~~~i~~~-~-~~~~~~~~IvltGGGA~l--~~~~l~~~~~~~v~v~~~ 309 (329)
T 4apw_A 251 STVIKKVKEKFLKDAIKLIEKR-G-FKLDQLDSLIFIGGTTQK--LKEQISKTYPNNSIITNN 309 (329)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH-T-CCTTSCSEEEEESTTHHH--HHHHHHHHSTTCEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-C-CCHHHccEEEEECChHHH--HHHHHHHHcCCCCEecCC
Confidence 4555666665555444444433 2 2223 5789999999974 568899999988888766
No 48
>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A*
Probab=72.62 E-value=6.8 Score=31.47 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccc
Q psy9355 97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA 140 (204)
Q Consensus 97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~ 140 (204)
+|.+.|-..++-|.+..+..+++.++++.+ +.-+|+++||.++
T Consensus 202 nT~~ai~sGi~~g~~g~Ie~~i~~~~~e~~-~~~~vi~TGG~a~ 244 (271)
T 2f9w_A 202 ATAEAVERGCLLMLRGFVREQYAMACELLG-PDCEIFLTGGDAE 244 (271)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEESTTGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEECCCHH
Confidence 467778889999999999999999988776 3457999999875
No 49
>2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima}
Probab=70.45 E-value=4.6 Score=34.44 Aligned_cols=47 Identities=9% Similarity=0.071 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcc-ccHHHHHHHHhhh
Q psy9355 105 AALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMT-ANKHLMQTQADLC 152 (204)
Q Consensus 105 AvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga-~s~~~~Qi~Adv~ 152 (204)
-++|-.+|+++..+-.+...+| .++-|+.+||.. +|+..++.+.+-+
T Consensus 300 lA~d~f~yri~k~IGa~~a~Lg-gvDaIVFTgGIGEns~~vR~~i~~~l 347 (403)
T 2iir_A 300 LVLEIYDYRIAKYIGAYAAAMN-GVDAIVFTAGVGENSPITREDVCSYL 347 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-CCSEEEEEHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCEEEECcccccCCHHHHHHHHhhh
Confidence 3788899999999888877777 789999999999 8888888776543
No 50
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=69.55 E-value=7.3 Score=31.19 Aligned_cols=55 Identities=18% Similarity=0.165 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEEe
Q psy9355 97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVGK 158 (204)
Q Consensus 97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~ 158 (204)
+|...|-..++-|.+..+..+++.+++..+ +.-+|+++||.+ +++++.+..+..+
T Consensus 183 nT~~ai~sGi~~g~~g~i~~~i~~~~~e~~-~~~~vi~TGG~a------~~l~~~~~~~~~~ 237 (268)
T 2h3g_X 183 NTVSAMQSGILYGYVGQVEGIVKRMKEEAK-QEPKVIATGGLA------KLISEESNVIDVV 237 (268)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SCCEEEEESTTH------HHHHHHCSSCSEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEECCCH------HHHHhhCCCCCEE
Confidence 467778889999999999999999988765 345799999975 4455556655444
No 51
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=68.44 E-value=8.3 Score=30.41 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccc
Q psy9355 97 TTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA 140 (204)
Q Consensus 97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~ 140 (204)
+|.+.|-..++-|.+..+..+++.++++. +.-+|+++||.++
T Consensus 181 nT~~ai~sGi~~g~~g~i~~~i~~~~~~~--~~~~vi~TGG~a~ 222 (249)
T 3bex_A 181 DTEENIRLGVVNGSVYALEGIIGRIKEVY--GDLPVVLTGGQSK 222 (249)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCEEEESTTSG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEECCChH
Confidence 46777888999999999999999998765 4557999999875
No 52
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=62.50 E-value=15 Score=29.38 Aligned_cols=43 Identities=14% Similarity=0.270 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCcceEEEecCccc
Q psy9355 97 TTRGHIVRAALEAICFQTRDILEAMKKD--CGIQLIKLQVDGGMTA 140 (204)
Q Consensus 97 ~~~~~l~rAvlEgia~~~~~~~e~l~~~--~g~~~~~I~~~GGga~ 140 (204)
+|...|-..++-|.+..+..+++.+++. .+. .-+|+++||.++
T Consensus 185 nT~~ai~sGi~~g~~g~i~~~i~~~~~~~~~~~-~~~vi~TGG~a~ 229 (266)
T 3djc_A 185 STIESIQSGVYYGVLGACKELIQRIHHEAFNGD-QILILATGGFAS 229 (266)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC-CEEEEEESTTGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCEEEEECCChH
Confidence 4677888899999999999999999876 453 346999999875
No 53
>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A*
Probab=59.36 E-value=6.4 Score=33.72 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcc-ccHHHHHHHHhhh
Q psy9355 105 AALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMT-ANKHLMQTQADLC 152 (204)
Q Consensus 105 AvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga-~s~~~~Qi~Adv~ 152 (204)
-++|-.+|+++..+-.+-..+| .++-|+.+||.. +|+.+++.+.+-+
T Consensus 308 lA~d~f~yri~k~IGa~aa~Lg-gvDaIVFTgGIGEns~~vR~~i~~~l 355 (415)
T 2e1z_A 308 LAIKTFVHRIARHIAGHAASLH-RLDGIIFTGGIGENSVLIRQLVIEHL 355 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCS-SCCEEEEEHHHHHHCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCEEEECccccccCHHHHHHHHhhH
Confidence 4888899999999988876665 589999999999 8888888776543
No 54
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=58.98 E-value=4.1 Score=36.96 Aligned_cols=48 Identities=17% Similarity=0.120 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCC
Q psy9355 103 VRAALEAICFQTRD-ILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGI 154 (204)
Q Consensus 103 ~rAvlEgia~~~~~-~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~ 154 (204)
=.||+|+|...-.. -...+++. ...|.++|||++-+-+--++-|-++.
T Consensus 478 dkAIi~SIt~a~~~~d~~k~~~~----y~nilivGggski~g~~~~L~dri~i 526 (655)
T 4am6_A 478 EKAIVQSIANASITADVTRMNSF----YSNILIVGGSSKIPALDFILTDRINI 526 (655)
T ss_dssp HHHHHHHHHHHHHTSCGGGHHHH----HTCEEEESTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccHHHHHHH----hhcEEEEcCcccCccHHHHHHHHHHh
Confidence 35777777654432 22233332 46799999999988888887777664
No 55
>1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A*
Probab=58.97 E-value=6.9 Score=33.41 Aligned_cols=46 Identities=9% Similarity=0.112 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcc-ccHHHHHHHHhh
Q psy9355 105 AALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMT-ANKHLMQTQADL 151 (204)
Q Consensus 105 AvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga-~s~~~~Qi~Adv 151 (204)
-++|-.+|+++..+-.+-..+| .++-|+.+||.. +++..++.+.+-
T Consensus 300 lA~d~f~yri~k~IGa~~a~Lg-gvDaiVFTgGIGEns~~vR~~i~~~ 346 (408)
T 1g99_A 300 LALEIFAYKVKKFIGEYSAVLN-GADAVVFTAGIGENSASIRKRILTG 346 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-SCSEEEEEHHHHHHCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhC-CCCEEEECccccccCHHHHHHHHhh
Confidence 3888899999999988877675 589999999999 888888877654
No 56
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=58.97 E-value=3.5 Score=34.09 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhcCCCcceEEEecCccccHHHHHHHHhhhCC
Q psy9355 104 RAALEAICFQTRDILEA-MKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGI 154 (204)
Q Consensus 104 rAvlEgia~~~~~~~e~-l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~ 154 (204)
+.+++-++-.+.+.++. +++ ..-.++.|+++||+|+- +.+.+.+.++.
T Consensus 272 ~~~i~~~~~~i~~~i~~~l~~-~~~~i~~IvL~GGga~l--l~~~l~~~~~~ 320 (346)
T 2fsj_A 272 GPILEDLANRIIENIRLNLRG-EVDRVTSLIPVGGGSNL--IGDRFEEIAPG 320 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHGG-GGGGEEEEEEESTTHHH--HGGGGGGGSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hhhcccEEEEECCcHHH--HHHHHHHHCcC
Confidence 55555555555544444 332 22245899999999986 77888888874
No 57
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=55.22 E-value=4.8 Score=35.96 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=45.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHh--cC--CCcceEEEecCccccHHHHHHHHhhhCC-cEEec
Q psy9355 88 GIICGITEDTTRGHIVRAALEA---ICFQTRDILEAMKKD--CG--IQLIKLQVDGGMTANKHLMQTQADLCGI-PVGKN 159 (204)
Q Consensus 88 g~~~Gl~~~~~~~~l~rAvlEg---ia~~~~~~~e~l~~~--~g--~~~~~I~~~GGga~s~~~~Qi~Adv~g~-pv~~~ 159 (204)
..+..+...++-++ ++-|-+- ..|- ...++.+... .+ +.+..|+++||+|+-+-+.++..++|+. +|++.
T Consensus 505 ~~L~~I~~R~~vEE-lelVR~~ak~~vfv-~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~~~VRiG 582 (607)
T 1nbw_A 505 GELVPIDNASPLEK-IRLVRRQAKEKVFV-TNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAG 582 (607)
T ss_dssp TEEEEECCSSCHHH-HHHHHHHHHHHHHH-HHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEE
T ss_pred cceeeeCCCcchHH-HHHHHHHHhhhhhh-HHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeEEe
Confidence 55666655555666 5444333 2221 1224444321 11 2347899999999999999999999999 99875
Q ss_pred cC
Q psy9355 160 LT 161 (204)
Q Consensus 160 ~~ 161 (204)
..
T Consensus 583 rP 584 (607)
T 1nbw_A 583 QG 584 (607)
T ss_dssp EC
T ss_pred cC
Confidence 53
No 58
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=54.82 E-value=18 Score=32.30 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=47.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHhc--C--CCcceEEEecCccccHHHHHHHHhhhCC-cEEec
Q psy9355 88 GIICGITEDTTRGHIVRAALEA---ICFQTRDILEAMKKDC--G--IQLIKLQVDGGMTANKHLMQTQADLCGI-PVGKN 159 (204)
Q Consensus 88 g~~~Gl~~~~~~~~l~rAvlEg---ia~~~~~~~e~l~~~~--g--~~~~~I~~~GGga~s~~~~Qi~Adv~g~-pv~~~ 159 (204)
..+..+...++-++ ++-|-+- ..|- ...++.+.... + +.+..|+++||+|+-+-+.++..++|+. +|++.
T Consensus 503 ~~L~~I~pR~~vEE-lelVR~~ak~~vfv-~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~ElA~~iL~~y~VRiG 580 (610)
T 2d0o_A 503 DELVPLPGDLALEK-VRAIRRSAKERVFV-TNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAG 580 (610)
T ss_dssp SCEEECCTTCCHHH-HHHHHHHHHHHHHH-HHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEE
T ss_pred cceeeeCCCcchHH-HHHHHHHHhhhhhh-HHHHHhcCCccCCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeEEe
Confidence 55667755555666 5444333 2221 22355554421 1 2348899999999999999999999999 99875
Q ss_pred cC
Q psy9355 160 LT 161 (204)
Q Consensus 160 ~~ 161 (204)
..
T Consensus 581 rP 582 (610)
T 2d0o_A 581 RG 582 (610)
T ss_dssp EC
T ss_pred cC
Confidence 53
No 59
>3khy_A Propionate kinase; csgid, IDP01739, ATP-binding, nucleotide-binding, transferase, structural genomics; 1.98A {Francisella tularensis subsp}
Probab=52.43 E-value=19 Score=30.48 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcc-ccHHHHHHHHhh---hCCcE
Q psy9355 103 VRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMT-ANKHLMQTQADL---CGIPV 156 (204)
Q Consensus 103 ~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga-~s~~~~Qi~Adv---~g~pv 156 (204)
++-++|-.+|+++..+-.+-..++ .++-|+.+||.. +++.+++.+.+- +|..+
T Consensus 289 A~lA~d~f~yri~k~IGa~aa~L~-gvDaIVFTgGIgEns~~iR~~i~~~l~~lGi~l 345 (384)
T 3khy_A 289 AKLAIEIFSHRVAKFVASYMIYFN-KLDALVFTGGIGENAANIRKNIISKLANLGFMI 345 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGCS-SCCEEEEEHHHHHHCHHHHHHHHHHTGGGTCCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhcccccEEe
Confidence 355888899999999888876667 799999999998 667677665543 45444
No 60
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=52.36 E-value=90 Score=26.23 Aligned_cols=82 Identities=12% Similarity=0.265 Sum_probs=49.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEE--EecCccccHHHHHHHHhhh-----CCcEEecc
Q psy9355 88 GIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQ--VDGGMTANKHLMQTQADLC-----GIPVGKNL 160 (204)
Q Consensus 88 g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~--~~GGga~s~~~~Qi~Adv~-----g~pv~~~~ 160 (204)
+.|+.+....+.+.+..| ++.+.+ ...++-|+ +.||.++.+...+-+.+.+ ++||.+-.
T Consensus 291 aNflDvgG~a~~e~~~~a------------l~~il~--d~~v~~ilvni~ggi~~~d~vA~gii~a~~~~~~~~Pivvrl 356 (395)
T 2fp4_B 291 ANFLDLGGGVKESQVYQA------------FKLLTA--DPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRL 356 (395)
T ss_dssp CEEEECCSSCCHHHHHHH------------HHHHHH--CTTCCEEEEEEEESSSCHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CCcEEECCCCCHHHHHHH------------HHHHhC--CCCCCEEEEEecCCccCcHHHHHHHHHHHHhcCCCCeEEEEc
Confidence 456666666666655543 333333 23455544 5688888877777666654 67987643
Q ss_pred CCC----------ccccccc--CCHHHHHHHhhcc
Q psy9355 161 TGG----------KDGGKYI--TDVSNASRTMLMN 183 (204)
Q Consensus 161 ~~~----------a~g~g~~--~~~~~a~~~~~~~ 183 (204)
.++ ..|..+| +|+++|+++.+..
T Consensus 357 ~G~n~~~g~~~L~~~gl~~~~~~~~~~Aa~~~v~~ 391 (395)
T 2fp4_B 357 EGTNVHEAQNILTNSGLPITSAVDLEDAAKKAVAS 391 (395)
T ss_dssp EETTHHHHHHHHHHTCSCCEECSSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHCCCceEeCCCHHHHHHHHHHH
Confidence 321 1244566 8999998887654
No 61
>3sk3_A Acetate kinase, acetokinase; actin-like ATPase domain, askha superfamily of phosphotransf acetokinase, ATP binding, phosphotransferase; HET: CIT; 1.90A {Salmonella enterica subsp} PDB: 3slc_A
Probab=46.43 E-value=24 Score=30.19 Aligned_cols=50 Identities=10% Similarity=0.144 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcc-ccHHHHHHHHhh
Q psy9355 102 IVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMT-ANKHLMQTQADL 151 (204)
Q Consensus 102 l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga-~s~~~~Qi~Adv 151 (204)
-++-++|-.+|+++..+-.+-..++-+++-|+.+||.. +++.+++.+.+-
T Consensus 313 ~A~lA~d~f~yri~k~IGa~aa~L~G~vDaIVFTgGIGEns~~vR~~v~~~ 363 (415)
T 3sk3_A 313 DAKRAMDVYCHRLAKYIGSYTALMDGRLDAVVFTGGIGENAAMVRELSLGK 363 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGSTTCCCEEEEEHHHHTTCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEECCccccCCHHHHHHHHhh
Confidence 35668899999999999888766665689999999999 567777766543
No 62
>4ijn_A Acetate kinase, acetokinase; proprionate kinase, ATP-dependent, metabolic intermediate biosynthesis, acetyl-COA biosynthesis, hydrolysis; HET: AMP; 1.70A {Mycobacterium smegmatis}
Probab=46.30 E-value=31 Score=29.33 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcc-ccHHHHHHHHh
Q psy9355 103 VRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMT-ANKHLMQTQAD 150 (204)
Q Consensus 103 ~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga-~s~~~~Qi~Ad 150 (204)
++-++|-.+|+++..+-.+.-.+| .++.|+++||.+ +++.+++.+.+
T Consensus 299 A~la~d~f~yriak~Iga~aa~LG-~vDaIVfTGGIgEns~~vr~~I~~ 346 (398)
T 4ijn_A 299 AKLAYDVYIHRLRKYIGAYMAVLG-RTDVISFTAGVGENVPPVRRDALA 346 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-SCCEEEEEHHHHHHCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEECCccccccHHHHHHHHH
Confidence 456888899999998888776665 689999999999 56656665543
No 63
>3r9p_A ACKA; ssgcid, seattle structural genomics center for infectious DI acetate kinase, transferase; HET: PGE; 1.90A {Mycobacterium avium subsp} PDB: 3p4i_A 4dq8_A
Probab=45.78 E-value=28 Score=29.51 Aligned_cols=47 Identities=11% Similarity=0.152 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccc-cHHHHHHHHh
Q psy9355 103 VRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA-NKHLMQTQAD 150 (204)
Q Consensus 103 ~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~-s~~~~Qi~Ad 150 (204)
++-++|-.+|+++..+-.+...+| .++.|+.+||... ++.+++.+.+
T Consensus 290 A~lA~d~f~yri~k~Iga~aa~Lg-~vDaIVfTGGIgens~~vR~~i~~ 337 (391)
T 3r9p_A 290 AQLAYSVFTHRLRKYIGAYLAVLG-HTDVISFTAGIGENDAAVRRDAVS 337 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-SCCEEEEEHHHHHHCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECcccccCCHHHHHHHHH
Confidence 456889999999999888876666 7899999999996 5767766543
No 64
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=40.06 E-value=1.5 Score=36.63 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=21.2
Q ss_pred cceEEEecCccccHHHHHHHHhhhC
Q psy9355 129 LIKLQVDGGMTANKHLMQTQADLCG 153 (204)
Q Consensus 129 ~~~I~~~GGga~s~~~~Qi~Adv~g 153 (204)
.++|+++||+|+-+-+.+.+.+-++
T Consensus 294 ~~~IvLtGG~s~~pG~~~rl~~el~ 318 (375)
T 2fxu_A 294 YANNVMSGGTTMYPGIADRMQKEIT 318 (375)
T ss_dssp HTCEEEESGGGCSTTHHHHHHHHHH
T ss_pred HhCcEeeCCCCCCccHHHHHHHHHH
Confidence 3679999999999888888888776
No 65
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=38.19 E-value=85 Score=22.66 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=21.7
Q ss_pred ceEEEecCccc-cHH--HHHHHHhhhCCcEEecc
Q psy9355 130 IKLQVDGGMTA-NKH--LMQTQADLCGIPVGKNL 160 (204)
Q Consensus 130 ~~I~~~GGga~-s~~--~~Qi~Adv~g~pv~~~~ 160 (204)
+-+++.||++. +.. -.+-+|+.+|.||....
T Consensus 36 rPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~ 69 (170)
T 3cf4_G 36 RPLLMVGTLALDPELLDRVVKISKAANIPIAATG 69 (170)
T ss_dssp SEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECT
T ss_pred CCEEEECCCccchhHHHHHHHHHHHhCCCEEECc
Confidence 45788887764 333 34568999999998643
No 66
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=37.85 E-value=1.2e+02 Score=25.46 Aligned_cols=85 Identities=12% Similarity=0.077 Sum_probs=52.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEE--EecCccccHHHHHHHHhhh-----CCcEEecc
Q psy9355 88 GIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQ--VDGGMTANKHLMQTQADLC-----GIPVGKNL 160 (204)
Q Consensus 88 g~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~--~~GGga~s~~~~Qi~Adv~-----g~pv~~~~ 160 (204)
+.|+.+..+.+.+++ +..++.+-+ ...++.|+ +.||.++.+...+-+.+.+ ++||.+.-
T Consensus 275 aN~lD~gG~a~~e~~------------~~al~~~l~--d~~v~~ilv~i~ggi~~~~~vA~~i~~a~~~~~~~kPvvv~~ 340 (397)
T 3ufx_B 275 ANFLDIGGGAKADVV------------YNALKVVLK--DPDVKGVFINIFGGITRADEVAKGVIRALEEGLLTKPVVMRV 340 (397)
T ss_dssp SEEEECCSCCCHHHH------------HHHHHHHHT--CTTCCEEEEEEEEEEEESHHHHHHHHHHHTTTCCCSCEEEEE
T ss_pred CCcEecCCCCCHHHH------------HHHHHHHHc--CCCCCEEEEECCCCCCCHHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 446666666666543 333333322 23455544 4688888887777777765 68887654
Q ss_pred CCC----------cccccccCCHHHHHHHhhccCeE
Q psy9355 161 TGG----------KDGGKYITDVSNASRTMLMNIET 186 (204)
Q Consensus 161 ~~~----------a~g~g~~~~~~~a~~~~~~~~~~ 186 (204)
.++ ..|.-.|.+.++|++++++..+.
T Consensus 341 ~G~~~~~~~~~l~~~gip~~~~~e~Aa~~~~~l~~~ 376 (397)
T 3ufx_B 341 AGTAEEEAKKLLEGKPVYMYPTSIEAAKVTVAMKGG 376 (397)
T ss_dssp EEECHHHHHHHTTTSSEEECSSHHHHHHHHHHSCCS
T ss_pred cCCCHHHHHHHHHhCCCcccCCHHHHHHHHHHHHHH
Confidence 431 12344579999999998876543
No 67
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=37.26 E-value=43 Score=24.82 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=27.1
Q ss_pred cceEEEecCcc--ccHHHHHHHHhhhCCcEEeccC
Q psy9355 129 LIKLQVDGGMT--ANKHLMQTQADLCGIPVGKNLT 161 (204)
Q Consensus 129 ~~~I~~~GGga--~s~~~~Qi~Adv~g~pv~~~~~ 161 (204)
.+-|+.+||.+ ..++..+.+|+++|+++..-+.
T Consensus 63 ~DlVittGG~g~~~~D~T~ea~a~~~~~~l~~~~e 97 (172)
T 3kbq_A 63 SDLVVSSGGLGPTFDDMTVEGFAKCIGQDLRIDED 97 (172)
T ss_dssp CSEEEEESCCSSSTTCCHHHHHHHHHTCCCEECHH
T ss_pred CCEEEEcCCCcCCcccchHHHHHHHcCCCeeeCHH
Confidence 36788999876 5789999999999999976444
No 68
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=36.79 E-value=1.1e+02 Score=23.88 Aligned_cols=56 Identities=11% Similarity=-0.037 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh-CCcEEecc
Q psy9355 103 VRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC-GIPVGKNL 160 (204)
Q Consensus 103 ~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~-g~pv~~~~ 160 (204)
++.+++-.+..+...+..+.... .++.|++.||.++++.+.+.+-+.+ ..+|..+.
T Consensus 216 a~~il~~~~~~La~~i~~l~~~l--~p~~IvlgGgv~~~~~~~~~l~~~~~~~~i~~~~ 272 (299)
T 2e2o_A 216 AMDILKQGAELLASQAVYLARKI--GTNKVYLKGGMFRSNIYHKFFTLYLEKEGIISDL 272 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--TCSEEEEESGGGGSHHHHHHHHHHHHHTTCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEECCccCcHHHHHHHHHHCCCCeEeccC
Confidence 34455555555555555544433 5678999999987666555554443 34777666
No 69
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=35.92 E-value=87 Score=25.89 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcccc-HHHHHHHHhhh
Q psy9355 103 VRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTAN-KHLMQTQADLC 152 (204)
Q Consensus 103 ~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s-~~~~Qi~Adv~ 152 (204)
++.+++-.+..+...+-.+...++.+++.|+++||.+++ +.+.+.+.+.+
T Consensus 270 a~~~l~~~~~~la~~i~~l~~~l~~~p~~IvlgGgi~~~~~~l~~~i~~~l 320 (381)
T 1saz_A 270 AKRVYRAMAYQIAKWIGKMAAVLKGEVDFIVLTGGLAHEKEFLVPWITKRV 320 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCSEEEEEEGGGGCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcCccChHHHHHHHHHHH
Confidence 345666667777777666655442368899999999865 32444444333
No 70
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=35.45 E-value=1.2e+02 Score=25.29 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=36.8
Q ss_pred CCcceEEE--ecCccccHHHHHHHHhh-----hCCcEEeccCCC----------ccccccc--CCHHHHHHHhhc
Q psy9355 127 IQLIKLQV--DGGMTANKHLMQTQADL-----CGIPVGKNLTGG----------KDGGKYI--TDVSNASRTMLM 182 (204)
Q Consensus 127 ~~~~~I~~--~GGga~s~~~~Qi~Adv-----~g~pv~~~~~~~----------a~g~g~~--~~~~~a~~~~~~ 182 (204)
..++-|++ .||.++.+...+-+.+. .++||.+--.++ ..|.-++ +++++|+++++.
T Consensus 309 ~~v~~ilvni~ggi~~~~~vA~gii~a~~~~~~~~pivvrl~G~n~~~g~~~l~~~g~~~~~~~~~~~aa~~~v~ 383 (388)
T 2nu8_B 309 DKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVA 383 (388)
T ss_dssp TTCCEEEEEEESCSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTTHHHHHHHHHTTCSSEEECSSHHHHHHHHHH
T ss_pred CCCCEEEEEecCCcCCchHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHCCCceecCCCHHHHHHHHHH
Confidence 34555554 68888887777776665 578988733321 1244566 888888887765
No 71
>4h0o_A Acetate kinase; askha (acetate and S kinase, HSC70, actin) superfamily, ribonuclease H-like fold transferase; 2.40A {Entamoeba histolytica}
Probab=35.39 E-value=66 Score=27.32 Aligned_cols=50 Identities=14% Similarity=0.075 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcc-ccHHHHHHHHhh
Q psy9355 101 HIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMT-ANKHLMQTQADL 151 (204)
Q Consensus 101 ~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga-~s~~~~Qi~Adv 151 (204)
+-++-++|-.+|+++..+-.+-..++- ++-|+.+||.. +++.+++.+.+-
T Consensus 300 ~~A~lA~d~f~yri~k~IGa~aa~L~G-vDaIVFTgGIGEns~~vR~~i~~~ 350 (404)
T 4h0o_A 300 KTCQLAFDVYIKQLAKTIGGLMVEIGG-LDLLVFTDQMGLEVWQVRKAICDK 350 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC-CSEEEEEHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEECCccccCcHHHHHHHHhh
Confidence 345668899999999998887666664 99999999975 668777765543
No 72
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=35.12 E-value=6.6 Score=32.95 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=18.5
Q ss_pred ceEEEecCccccHHHHHHHHhhhCC-----------------cEEe--ccC---CCcccccccCCHHHH
Q psy9355 130 IKLQVDGGMTANKHLMQTQADLCGI-----------------PVGK--NLT---GGKDGGKYITDVSNA 176 (204)
Q Consensus 130 ~~I~~~GGga~s~~~~Qi~Adv~g~-----------------pv~~--~~~---~~a~g~g~~~~~~~a 176 (204)
++|+++||+|+-+-+.+.+.+-++. +|.+ ++. .+..|+.++.++...
T Consensus 299 ~nIvLtGG~s~~~G~~~rl~~el~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl~~f 367 (394)
T 1k8k_B 299 KHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKD 367 (394)
T ss_dssp TTCEEESGGGCSTTHHHHHHHHHHHHHHHHTCSSCCCTTCCCCC-------------------------
T ss_pred hCEEEeCcccccccHHHHHHHHHHHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhCCcCC
Confidence 5699999999877666655554432 3433 222 345777788777653
No 73
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=34.36 E-value=1e+02 Score=24.52 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcccc-HHHHHHHH
Q psy9355 105 AALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTAN-KHLMQTQA 149 (204)
Q Consensus 105 AvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s-~~~~Qi~A 149 (204)
.+++-.+..+...+-.+... .+++.|++.||.++. +.+.+.+-
T Consensus 239 ~~~~~~~~~La~~i~~l~~~--ldP~~IvlgG~i~~~~~~l~~~l~ 282 (321)
T 3r8e_A 239 AVWADIGTIIGESLVNIVRV--MDLNNILLGGGISGAFDYFVPNLK 282 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HCCCEEEEESGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HCCCEEEEeChhcccchHHHHHHH
Confidence 34555555555555555443 356889999999875 55554443
No 74
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=30.71 E-value=1.3e+02 Score=23.31 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHH
Q psy9355 106 ALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQ 148 (204)
Q Consensus 106 vlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~ 148 (204)
+++-.+..+...+..+... .+++.|++.||.+..+.+.+.+
T Consensus 207 i~~~~~~~L~~~i~~l~~~--l~p~~IvlgG~i~~~~~~~~~l 247 (292)
T 2gup_A 207 AIERMNRNLAQGLLNIQYL--IDPGVISLGGSISQNPDFIQGV 247 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCCSEEEEESGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--hCCCEEEEeCccccchHHHHHH
Confidence 3333344444444444333 2567898888887666555443
No 75
>4h0p_A Acetate kinase; askha (acetate and sugar kinas actin) superfamily, ribonuclease H-like fold, transferase; 1.89A {Cryptococcus neoformans}
Probab=29.55 E-value=55 Score=28.13 Aligned_cols=50 Identities=8% Similarity=0.004 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-----CCcceEEEecCcc-ccHHHHHHHHhhh
Q psy9355 103 VRAALEAICFQTRDILEAMKKDCG-----IQLIKLQVDGGMT-ANKHLMQTQADLC 152 (204)
Q Consensus 103 ~rAvlEgia~~~~~~~e~l~~~~g-----~~~~~I~~~GGga-~s~~~~Qi~Adv~ 152 (204)
++-++|-.+|+++..+-.+-..++ -.++-|+.+||.. +++.+++.+.+-+
T Consensus 322 A~lA~d~f~yri~k~IGa~aa~L~~~~~~G~vDaIVFTGGIGEns~~iR~~i~~~l 377 (438)
T 4h0p_A 322 AKLTYAVFLDRLLNFVAQYLFKLLSEVPIESIDGLVFSGGIGEKGAELRRDVLKKL 377 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGSCEEEEEHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCEEEECCccccCcHHHHHHHHHhH
Confidence 566888899999998887766554 2589999999985 8888887766543
No 76
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=29.01 E-value=1.4e+02 Score=23.64 Aligned_cols=43 Identities=9% Similarity=0.130 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcccc-HHHHHHH
Q psy9355 104 RAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTAN-KHLMQTQ 148 (204)
Q Consensus 104 rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s-~~~~Qi~ 148 (204)
+.+++-.+..+...+-.+... .+++.|++.||.+++ +++.+.+
T Consensus 230 ~~~~~~~~~~La~~i~~l~~~--l~p~~IvlgGgi~~~~~~l~~~l 273 (321)
T 3vgl_A 230 VDSFRELARWAGAGLADLASL--FDPSAFIVGGGVSDEGELVLDPI 273 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HCCSEEEEESGGGGGTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hCCCEEEEeChhhcchHHHHHHH
Confidence 345555555555555555443 356889999998875 5544433
No 77
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=28.10 E-value=68 Score=25.24 Aligned_cols=63 Identities=13% Similarity=0.080 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCcccc--HHHHHHHHhhhCCcEEeccCCCcccc
Q psy9355 101 HIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTAN--KHLMQTQADLCGIPVGKNLTGGKDGG 167 (204)
Q Consensus 101 ~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s--~~~~Qi~Adv~g~pv~~~~~~~a~g~ 167 (204)
..++.+++-.+..+...+ .+. .-.+++.|++.||.+++ +.+.+.+... ..++..+...+..|+
T Consensus 210 ~~A~~i~~~~~~~La~~i-~~~--~~~~p~~vvlgGGv~~~~~~~l~~~l~~~-~~~i~~~~~a~~~GA 274 (291)
T 1zbs_A 210 PAVYSLVQNSFDDFLVRN-VLR--YNRPDLPLHFIGSVAFHYREVLSSVIKKR-GLTLGSVLQSPMEGL 274 (291)
T ss_dssp HHHHHHHHHHHHHHHHHH-TGG--GCCTTSCEEEESHHHHHTHHHHHHHHHHT-TCCEEEEESCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-hcc--cCCCCceEEEECchHHhhHHHHHHHHHHc-CCeecccCcCHHHHH
Confidence 345566666666565555 221 11257789999998887 4444444432 235555554443443
No 78
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=28.08 E-value=1.1e+02 Score=24.09 Aligned_cols=46 Identities=9% Similarity=0.060 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh
Q psy9355 105 AALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC 152 (204)
Q Consensus 105 AvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~ 152 (204)
.+++-.+..+...+-.+... ..++.|++.||.++.+.+.+.+-+.+
T Consensus 216 ~~~~~~~~~La~~i~~l~~~--~~p~~IvlgGgi~~~~~~~~~l~~~l 261 (297)
T 4htl_A 216 RLITEFYTGICTGLYNLIYL--FDPTHIFIGGGITSRPTFIAELKHHM 261 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HCCSEEEEESGGGGSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--hCCCEEEEeCcccccHHHHHHHHHHH
Confidence 34444444444444444333 35788999999987654444444433
No 79
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=27.72 E-value=1.1e+02 Score=25.40 Aligned_cols=33 Identities=18% Similarity=-0.104 Sum_probs=27.0
Q ss_pred cceEEEecCccccHHHHHHHHhhhCCcEEeccCC
Q psy9355 129 LIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG 162 (204)
Q Consensus 129 ~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~ 162 (204)
.+-|+..|||+-.+. ...+|...++|+...+..
T Consensus 107 ~d~IIavGGGs~~D~-AK~iA~~~~~p~i~IPTT 139 (387)
T 3uhj_A 107 SDILVGVGGGKTADT-AKIVAIDTGARIVIAPTI 139 (387)
T ss_dssp CSEEEEESSHHHHHH-HHHHHHHTTCEEEECCSS
T ss_pred CCEEEEeCCcHHHHH-HHHHHHhcCCCEEEecCc
Confidence 578999999998776 678888899999865553
No 80
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=27.61 E-value=2.3e+02 Score=23.34 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhhCCcEE
Q psy9355 99 RGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPVG 157 (204)
Q Consensus 99 ~~~l~rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~g~pv~ 157 (204)
..++++.++|-..-.+.+.++.+-+..+ +++|+++|+| +.+...+|+. +|+.
T Consensus 248 ~~~lA~~~~~~q~~~I~~av~~v~~~~~--~~~vv~aG~G---~~L~~~la~~--~~~~ 299 (334)
T 3cet_A 248 AENIAKNYYELWKELILENVENVAEKYG--SKKVVITGLG---ENILKDALAD--FEVI 299 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCEEEEESTT---HHHHHHHTTT--SEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEeCCc---HHHHHHHHhh--CCee
Confidence 5568888888887777777766544333 3489999988 3666777766 7776
No 81
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=25.32 E-value=1.8e+02 Score=22.79 Aligned_cols=44 Identities=14% Similarity=0.242 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccc-cHHHHHHHH
Q psy9355 104 RAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTA-NKHLMQTQA 149 (204)
Q Consensus 104 rAvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~-s~~~~Qi~A 149 (204)
+.+++-.+..+...+..+.... .++.|++.||.++ ++.+.+.+-
T Consensus 240 ~~i~~~~~~~L~~~i~~l~~~l--~p~~IvlgGg~~~~~~~~~~~l~ 284 (326)
T 2qm1_A 240 LMVVDRVCFYLGLATGNLGNTL--NPDSVVIGGGVSAAGEFLRSRVE 284 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--CCSEEEEEESGGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--CCCEEEEcChhhhchHHHHHHHH
Confidence 4455555555555555554433 4678999999885 555554443
No 82
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=23.82 E-value=1.3e+02 Score=24.68 Aligned_cols=33 Identities=15% Similarity=-0.075 Sum_probs=26.6
Q ss_pred cceEEEecCccccHHHHHHHHhhhCCcEEeccCC
Q psy9355 129 LIKLQVDGGMTANKHLMQTQADLCGIPVGKNLTG 162 (204)
Q Consensus 129 ~~~I~~~GGga~s~~~~Qi~Adv~g~pv~~~~~~ 162 (204)
.+-|+..|||+-.+. ....|...++|+...+..
T Consensus 87 ~d~IIavGGGsv~D~-aK~iA~~~~~p~i~IPTT 119 (370)
T 1jq5_A 87 AAIVIGVGGGKTLDT-AKAVADELDAYIVIVPTA 119 (370)
T ss_dssp CSEEEEEESHHHHHH-HHHHHHHHTCEEEEEESS
T ss_pred CCEEEEeCChHHHHH-HHHHHHhcCCCEEEeccc
Confidence 588999999998775 678888889999865553
No 83
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=23.75 E-value=1.7e+02 Score=23.30 Aligned_cols=44 Identities=7% Similarity=0.020 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhh
Q psy9355 106 ALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADL 151 (204)
Q Consensus 106 vlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv 151 (204)
+++-.+..+...+-.+... ..++.|++.||.++.+.+.+.+-+.
T Consensus 249 ~~~~~~~~La~~i~~l~~~--l~p~~IvlgGgi~~~~~l~~~l~~~ 292 (327)
T 4db3_A 249 HVERFMELLAICFGNIFTA--NDPHVVALGGGLSNFELIYEEMPKR 292 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCCSEEEEESGGGGCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--hCCCEEEEeCcccchHHHHHHHHHH
Confidence 3444444444444444333 3568899999888765555544443
No 84
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=23.58 E-value=48 Score=24.26 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=23.7
Q ss_pred cceEEEecCcc--ccHHHHHHHHhhhCCcEE
Q psy9355 129 LIKLQVDGGMT--ANKHLMQTQADLCGIPVG 157 (204)
Q Consensus 129 ~~~I~~~GGga--~s~~~~Qi~Adv~g~pv~ 157 (204)
.+-|+.+||.+ ..++..+.++.++++++.
T Consensus 70 ~DlVittGG~g~~~~D~t~ea~~~~~~~~l~ 100 (172)
T 1mkz_A 70 VQVVLITGGTGLTEGDQAPEALLPLFDREVE 100 (172)
T ss_dssp CCEEEEESCCSSSTTCCHHHHHGGGCSEECH
T ss_pred CCEEEeCCCCCCCCCCCHHHHHHHHhcccCC
Confidence 57788899886 568999999999887664
No 85
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=23.14 E-value=1e+02 Score=25.23 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEEecCccccHH--HHHHHHhhhC
Q psy9355 100 GHIVRAALEAICFQTRDILEAMKKDCG--IQLIKLQVDGGMTANKH--LMQTQADLCG 153 (204)
Q Consensus 100 ~~l~rAvlEgia~~~~~~~e~l~~~~g--~~~~~I~~~GGga~s~~--~~Qi~Adv~g 153 (204)
.++++..++-++ ..+++.+++... -.++.|+++||||.-.. +.+.+.+.+.
T Consensus 263 ~~~i~~a~~~~~---~~I~~~i~~~l~~~~~~~~Ivl~GGGa~l~~~~l~~~i~~~~~ 317 (355)
T 3js6_A 263 KDEFYKEQDSLI---EEVMSNFEITVGNINSIDRIIVTGGGANIHFDSLSHYYSDVFE 317 (355)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHTCCTTSCSEEEEESTTHHHHHHHHHHHSSSCEE
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHhhchhhccEEEEECcchhcchhhHHHHHHHHCC
Confidence 344444444443 334444444221 23578999999997433 4456666663
No 86
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=20.28 E-value=1.3e+02 Score=23.33 Aligned_cols=46 Identities=7% Similarity=0.055 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccccHHHHHHHHhhh
Q psy9355 105 AALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC 152 (204)
Q Consensus 105 AvlEgia~~~~~~~e~l~~~~g~~~~~I~~~GGga~s~~~~Qi~Adv~ 152 (204)
.+++-.+..+...+..+.... .++.|++.||.+.++.+.+.+.+.+
T Consensus 212 ~i~~~~~~~L~~~i~~l~~~l--~p~~ivlgG~~~~~~~~~~~l~~~l 257 (289)
T 2aa4_A 212 QLIHRSARTLARLIADIKATT--DCQCVVVGGSVGLAEGYLALVETYL 257 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--CCSEEEEEHHHHTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CCCEEEEeCcccccHHHHHHHHHHH
Confidence 344444555555555444433 4677888888875555554444433
Done!