RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9355
(204 letters)
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif,
actin- like ATPase domain, transferase; 2.30A
{Cellulomonas SP}
Length = 504
Score = 267 bits (684), Expect = 4e-88
Identities = 86/152 (56%), Positives = 110/152 (72%)
Query: 5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
V S+ GLLTTV +K+GD P VYALEGS+AV G+ + WLRDN+GM ++E LA +
Sbjct: 280 VMSKNGLLTTVCYKIGDAPAVYALEGSIAVTGSLVQWLRDNLGMFEDAPDVEWLAGKVQD 339
Query: 65 TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
G YFVPAFSGL+APYW+PDARG + G+T R HI RAALEA FQ+R++++AM D
Sbjct: 340 NGGAYFVPAFSGLFAPYWRPDARGALVGLTRYVNRNHIARAALEATAFQSREVVDAMNAD 399
Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
G+ L +L+VDGGM AN+ LMQ QAD G+ V
Sbjct: 400 SGVDLTELRVDGGMVANELLMQFQADQLGVDV 431
Score = 76.0 bits (188), Expect = 1e-16
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
N+TGG +GG ++TDV+NASRTMLM+++TL W + I
Sbjct: 170 NMTGGTEGGVHVTDVTNASRTMLMDLDTLSWREDIAADMGI 210
>2w40_A Glycerol kinase, putative; closed conformation, malaria,
transferase, sugar kinase/HSP70/actin superfamily, open
conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Length = 503
Score = 261 bits (670), Expect = 4e-86
Identities = 67/154 (43%), Positives = 95/154 (61%), Gaps = 3/154 (1%)
Query: 5 VDSRQGLLTTVAFKLG-DEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
V S GL+TT+ +K ++ YALEGS+ AG+ ++WL N ++ E + E
Sbjct: 283 VYSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLLKN-KLIDDPSEASDIMEKCE 341
Query: 64 HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
+T V FVPAFSGLYAP W+ DAR I G+T +T R HIVRA LE I FQ +I++++
Sbjct: 342 NTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTS 401
Query: 124 DCGIQLIK-LQVDGGMTANKHLMQTQADLCGIPV 156
D GI+++ L+ DGGMT NK MQ +D+ +
Sbjct: 402 DMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKI 435
Score = 69.1 bits (170), Expect = 4e-14
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 4/41 (9%)
Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
NLT G TDV+NASRT+LM+I TL+WD +C ++ I
Sbjct: 174 NLTKGN----CYTDVTNASRTLLMDINTLQWDEKMCKIFNI 210
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation,
microfluidics,; 2.00A {Escherichia coli} SCOP: c.55.1.4
c.55.1.4 PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G*
1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y*
1gll_Y*
Length = 510
Score = 255 bits (655), Expect = 8e-84
Identities = 77/152 (50%), Positives = 99/152 (65%), Gaps = 1/152 (0%)
Query: 5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
V S GLLTT+A E YALEG+V +AGA++ WLRD + ++ + E A ++
Sbjct: 279 VKSENGLLTTIACGPTGEVN-YALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQN 337
Query: 65 TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
T VY VPAF+GL APYW P ARG I G+T HI+RA LE+I +QTRD+LEAM+ D
Sbjct: 338 TNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQAD 397
Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
GI+L L+VDGG AN LMQ Q+D+ G V
Sbjct: 398 SGIRLHALRVDGGAVANNFLMQFQSDILGTRV 429
Score = 67.6 bits (166), Expect = 1e-13
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
+T G+ ++TD +NASRTML NI TL+WD + V +I
Sbjct: 171 KMTQGR---VHVTDYTNASRTMLFNIHTLDWDDKMLEVLDI 208
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti
binding, phosphoprotein, transferase; 1.73A
{Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X
3h45_X 3d7e_O 1r59_O 1xup_O
Length = 506
Score = 255 bits (654), Expect = 1e-83
Identities = 69/152 (45%), Positives = 97/152 (63%), Gaps = 1/152 (0%)
Query: 5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
S LLTT+ + + + YALEGS+ VAG+A+ WLRD + M+ + E LA +
Sbjct: 281 QLSDNDLLTTIGYGINGKVY-YALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKG 339
Query: 65 TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
+VY VPAF+GL APYW +ARG + G+T TT+ VRA L+A+ +Q++D+++ MKKD
Sbjct: 340 DNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKD 399
Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
GI + L+VDGG N LMQ QAD+ I V
Sbjct: 400 SGIDIPLLKVDGGAAKNDLLMQFQADILDIDV 431
Score = 67.2 bits (165), Expect = 2e-13
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
LT G+ ++TD SNASRTML NI LEWD + + I
Sbjct: 173 KLTDGQ---VHVTDYSNASRTMLYNIHKLEWDQEILDLLNI 210
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism,
nucleotide-binding, transferase, struct genomics; HET:
MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Length = 501
Score = 254 bits (652), Expect = 2e-83
Identities = 73/152 (48%), Positives = 97/152 (63%), Gaps = 1/152 (0%)
Query: 5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
V S GLLTT+A+ + + YALEGS+ V+G+A+ WLRD + M+ + ES A
Sbjct: 282 VKSESGLLTTIAYGIDGKVN-YALEGSIFVSGSAIQWLRDGLRMINSAPQSESYATRVDS 340
Query: 65 TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
T VY VPAF GL PYW +ARG I G+T T + H +RA LE++C+QTRD++EAM KD
Sbjct: 341 TEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEHFIRATLESLCYQTRDVMEAMSKD 400
Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
GI + L+VDGG N +MQ QAD+ V
Sbjct: 401 SGIDVQSLRVDGGAVKNNFIMQFQADIVNTSV 432
Score = 67.2 bits (165), Expect = 2e-13
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
L+G +ITD SNASRT++ NI LEWD L + +
Sbjct: 174 KLSGKA---AHITDYSNASRTLMFNIHDLEWDDELLELLTV 211
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.80A {Thermus thermophilus}
Length = 495
Score = 250 bits (642), Expect = 7e-82
Identities = 81/152 (53%), Positives = 109/152 (71%), Gaps = 2/152 (1%)
Query: 5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
V S +GLL TVA+ LG YALEGS+ VAGAA+ WL++ VG++ E+E+LA S
Sbjct: 277 VLSEKGLLATVAWSLGGRAT-YALEGSLFVAGAAVGWLKE-VGLIRESAEVEALAASVED 334
Query: 65 TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
TGDVYFVPAF+GL APYW P ARG + G+T T+R H+ RAALE + FQ RD++ AM+++
Sbjct: 335 TGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLARAALEGVAFQVRDVVLAMEEE 394
Query: 125 CGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
G++L L+ DGGM N+ ++ QADL G+PV
Sbjct: 395 AGVRLKVLKADGGMAQNRLFLKIQADLLGVPV 426
Score = 67.6 bits (166), Expect = 1e-13
Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
NLTGGK + TD +NASRT+L N+ TL WDP L I
Sbjct: 170 NLTGGK---VHATDPTNASRTLLFNLHTLAWDPELLEALGI 207
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
transferase; 2.33A {Sinorhizobium meliloti}
Length = 520
Score = 250 bits (641), Expect = 2e-81
Identities = 79/154 (51%), Positives = 101/154 (65%), Gaps = 3/154 (1%)
Query: 5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
V S+ LLTT+A++L E YALEGS+ VAGAA+ WLRD + ++ + SLAES
Sbjct: 301 VRSKNRLLTTIAYRLDGE-TTYALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADP 359
Query: 65 TGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKD 124
+ +VY VPAF+GL AP+W PDARG I G+T +T RAALEA+C+QTRD+LEAM KD
Sbjct: 360 SQEVYLVPAFTGLGAPHWDPDARGAIFGMTRNTGPAEFARAALEAVCYQTRDLLEAMHKD 419
Query: 125 C--GIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
L+VDGGM A+ MQ +DL PV
Sbjct: 420 WRRNGNDTVLRVDGGMVASDWTMQRLSDLLDAPV 453
Score = 66.8 bits (164), Expect = 2e-13
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
LTGG+ + TD +NASRT+L NI WD L V +
Sbjct: 194 RLTGGE---CFCTDATNASRTLLYNIAENAWDDELTEVLRV 231
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL
metabolism, nucleotide-binding, transferase; 2.40A
{Thermococcus kodakarensis}
Length = 497
Score = 242 bits (619), Expect = 2e-78
Identities = 75/148 (50%), Positives = 93/148 (62%), Gaps = 3/148 (2%)
Query: 9 QGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGDV 68
LLTT+A+ L YALEGS+ V GAA+ WLRD + ++ E E LA V
Sbjct: 277 DNLLTTIAWGLNGRVS-YALEGSIFVTGAAVQWLRDGIKIIKHASETEELATKLESNEGV 335
Query: 69 YFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQ 128
YFVPAF GL APYW ARGII GIT T R H+ RA LEAI + TRD+++ M+K +Q
Sbjct: 336 YFVPAFVGLGAPYWDQFARGIIIGITRGTGREHLARATLEAIAYLTRDVVDEMEKL--VQ 393
Query: 129 LIKLQVDGGMTANKHLMQTQADLCGIPV 156
+ +L+VDGG TAN LMQ QAD+ V
Sbjct: 394 IKELRVDGGATANDFLMQFQADILNRKV 421
Score = 65.3 bits (160), Expect = 7e-13
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 5/41 (12%)
Query: 159 NLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
LTG ++TD SNASRTML NI+ L+WD L +++I
Sbjct: 169 RLTGE-----HVTDYSNASRTMLFNIKKLDWDDELLELFDI 204
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 146 bits (370), Expect = 8e-42
Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 8/156 (5%)
Query: 3 FKVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMV-TGVEEIESLAE- 60
K+D A + Y L G V G NW R + ++ +A+
Sbjct: 272 PKIDPSASYFCYPA-----DKTHYLLGGPVNNGGIVFNWARQTLFDADETPQDFLDVAQT 326
Query: 61 SHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEA 120
+ + ++ F+P G AP W +ARG G+T + + RA +E I F D
Sbjct: 327 APAGSRNLIFLPYLGGERAPIWDANARGSFVGLTRMHQKPEMARAVIEGIIFNLYDAASN 386
Query: 121 MKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
+ K+ + + + GG + + Q A++ +P+
Sbjct: 387 LIKN-TKKPVAINATGGFLKSDFVRQLCANIFNVPI 421
Score = 51.4 bits (124), Expect = 5e-08
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEINMQ 202
GK +TD + A+ T ++N++TL WD L + +I +
Sbjct: 167 GKLVTDTTMAAGTGILNLKTLTWDQELLDILKIKKE 202
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 138 bits (350), Expect = 6e-39
Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 5/154 (3%)
Query: 5 VDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRH 64
+ L + + G Y + ++ L++ + + + + ++
Sbjct: 271 FTNDTALAANITNEGG-AEGRYRVLKNIMGLWLLQRVLQE--RQINDLPALIAATQALPA 327
Query: 65 TGDVYFV--PAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMK 122
+ F + A + + R +++ D+L +
Sbjct: 328 CRFIINPNDDRFINPDEMCSEIQAACREMAQPIPESDAELARCIFDSLALLYADVLHELA 387
Query: 123 KDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
+ G +L + GG N L Q AD CGI V
Sbjct: 388 QLRGEDFSQLHIVGGGCQNTLLNQLCADACGIRV 421
Score = 49.6 bits (119), Expect = 2e-07
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEINMQ 202
GK + +NA+ T L+NI + +WD L N
Sbjct: 170 GKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKA 205
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 106 bits (267), Expect = 3e-27
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 5/135 (3%)
Query: 26 YALEGSVAVAGAAMNWLRDNVGMVTGV---EEIESLAESHR-HTGDVYFVPAFSGLYAPY 81
YA G +A G+A+NWL + G ++++LA + +P F G P
Sbjct: 295 YAPNGCMAATGSALNWLAKLLAPEAGEAAHAQLDALAAEVPAGADGLVCLPYFLGEKTPI 354
Query: 82 WQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTAN 141
P A G G++ TRGH+ RA LEA+ R + + D G + G T +
Sbjct: 355 HDPFASGTFTGLSLSHTRGHLWRALLEAVALAFRHHVAVL-DDIGHAPQRFFASDGGTRS 413
Query: 142 KHLMQTQADLCGIPV 156
+ M AD+ PV
Sbjct: 414 RVWMGIMADVLQRPV 428
Score = 42.6 bits (101), Expect = 4e-05
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201
G+ + D + A +++ + + L + I
Sbjct: 173 GERVVDRNWALEGGFIDLASGTVEADLVALAHIPP 207
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 103 bits (259), Expect = 4e-26
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 14/147 (9%)
Query: 23 PVVYALEGSVAVAGAAMNWLRDNVGMVTGVEE-----------IESLAESHRH-TGDVYF 70
P E + G W + +E +E A R +
Sbjct: 323 PGYLGYEAGQSAVGDIFAWFVKHGVSAATFDEAQEKGVNVHALLEEKASQLRPGESGLLA 382
Query: 71 VPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLI 130
+ ++G + + G++ G T T I RA LEA F TR I++A G+++
Sbjct: 383 LDWWNGNRSILVDTELSGMLLGYTLQTKPEEIYRALLEATAFGTRAIVDAF-HGRGVEVH 441
Query: 131 KLQVDGGMTA-NKHLMQTQADLCGIPV 156
+L GG+ N LMQ AD+ +
Sbjct: 442 ELYACGGLPQKNHLLMQIFADVTNREI 468
Score = 32.0 bits (73), Expect = 0.14
Identities = 3/35 (8%), Positives = 9/35 (25%)
Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201
GK + + A + + + +
Sbjct: 196 GKIVKNSCTAGYKAIWHKREGYPSNEFFKALDPRL 230
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 101 bits (255), Expect = 1e-25
Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 26 YALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTGD-VYFVPAFSGLYAPYWQP 84
+ L + A + ++W G ++ V + + A+ + + V+F+P SG P+ P
Sbjct: 285 WHLMSVMLSAASCLDWAAKLTG-LSNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNP 343
Query: 85 DARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHL 144
A+G+ G+T + RA LE + + D ++ + CGI+ + + GG +++
Sbjct: 344 QAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVV-HACGIKPQSVTLIGGGARSEYW 402
Query: 145 MQTQADLCGIPV 156
Q AD+ G +
Sbjct: 403 RQMLADISGQQL 414
Score = 41.8 bits (99), Expect = 6e-05
Identities = 7/35 (20%), Positives = 22/35 (62%)
Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201
G++ +D+S+A+ TM +++ +W ++ +++
Sbjct: 162 GEFASDMSDAAGTMWLDVAKRDWSDVMLQACDLSR 196
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 100 bits (250), Expect = 7e-25
Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 9/137 (6%)
Query: 26 YALEGSVAVAGAAMNWLRDNVGMVTGV------EEIESLAESHRHTGDVYFVPAFSGLYA 79
V AG + W VG G + + + FVP
Sbjct: 297 TLQVAPVLNAGNILQWALTLVGHRPGEDCAEYFHMAAAEVQGVTVPDGLLFVPYLHAERC 356
Query: 80 PYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMT 139
P P RG + G+T TTR I+ A LE R E + + L+K+ GG
Sbjct: 357 PVELPAPRGALLGVTGATTRAQILLAVLEGAALSLRWCAELL-GMEKVGLLKVV--GGGA 413
Query: 140 ANKHLMQTQADLCGIPV 156
++ ++ AD + +
Sbjct: 414 RSEAWLRMIADNLNVSL 430
Score = 42.6 bits (101), Expect = 4e-05
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201
G++ TD +NAS T L + W L + ++
Sbjct: 171 GRHATDRTNASTTGLYRPKDDAWHVELLADYGFSL 205
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 99.7 bits (249), Expect = 1e-24
Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 24/154 (15%)
Query: 26 YALEGSVAVAGAAMNWLRDNVGMV---------TGVEEIESLAESHRH-----------T 65
+ EG + GA ++ + + G E+L R T
Sbjct: 318 WLNEGGQSATGALIDHIIQSHPCYPALLEQAKNKGETIYEALNYILRQMAGEPENIAFLT 377
Query: 66 GDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIV---RAALEAICFQTRDILEAMK 122
D++ +P F G +P P+ GII G+ TT + A ++A+ TR I+E M
Sbjct: 378 NDIHMLPYFHGNRSPRANPNLTGIITGLKLSTTPEDMALRYLATIQALALGTRHIIETM- 436
Query: 123 KDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
G + + GG T N +Q A+ G +
Sbjct: 437 NQNGYNIDTMMASGGGTKNPIFVQEHANATGCAM 470
Score = 33.8 bits (78), Expect = 0.031
Identities = 3/33 (9%), Positives = 7/33 (21%)
Query: 167 GKYITDVSNASRTMLMNIETLEWDPMLCGVWEI 199
+ + WDP + +
Sbjct: 177 KDETRSLCSTVCKWTYLGHEDRWDPSYFKLVGL 209
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 88.2 bits (219), Expect = 9e-21
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 35 AGAAMNWLRDNVGMVTGVEEIESLAESHR-HTGDVYFVPAFSGLYAPYWQPDARGIICGI 93
++ R +G+ +E+ LA + + + VP F G P P+A G+
Sbjct: 333 GSRILDAGRAALGV--DYDELAKLAFASKPGANGITLVPYFDGERTPNR-PNATATFSGM 389
Query: 94 T-EDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLC 152
T +TTR ++ RA +E + RD LE + + G + ++ + GG ++ + +
Sbjct: 390 TLANTTRENLARAFVEGLLCSQRDCLELI-RSLGASITRILLIGGGAKSEAIRTLAPSIL 448
Query: 153 GIPV 156
G+ V
Sbjct: 449 GMDV 452
Score = 35.0 bits (81), Expect = 0.013
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 151 LCGIPVGKNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLC 194
+ G TD S+AS T+ + + E+ L
Sbjct: 175 IAGYGPVAE-GEDAHLEALFTDRSDASGTIYYDAASNEYRRDLI 217
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain
12444, SGX, transferase; 2.50A {Novosphingobium
aromaticivorans}
Length = 482
Score = 58.3 bits (141), Expect = 2e-10
Identities = 13/91 (14%), Positives = 22/91 (24%), Gaps = 10/91 (10%)
Query: 67 DVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCG 126
+P + PY G I AA L+ +
Sbjct: 335 GRMILPTLMRGFGPYP----HGRFAWINRPEDWFERRAAACLYAALVADTALDLIGSTG- 389
Query: 127 IQLIKLQVDGGMTANKHLMQTQADLC-GIPV 156
++ V+G ++ A L V
Sbjct: 390 ----RILVEGRFAEADVFVRALASLRPDCAV 416
Score = 34.8 bits (80), Expect = 0.016
Identities = 5/28 (17%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 167 GKYITDVSNAS-RTMLMNIETLEWDPML 193
G+ +++V++ + L + + ++ PM
Sbjct: 162 GRAVSEVTSLGCHSDLWDPQDGDFSPMA 189
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 3e-06
Identities = 32/176 (18%), Positives = 54/176 (30%), Gaps = 77/176 (43%)
Query: 2 AFKVDSRQGLLTTVAFK----LGDEPVVY-ALEGSVAVAGA------------------- 37
AF+ +GL+ A LG E Y AL ++A
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLG-E---YAAL---ASLADVMSIESLVEVVFYRGMTMQV 1795
Query: 38 AM---NWLRDNVGMV----------TGVEEIESLAES-HRHTGDVYFVPAFSGL----Y- 78
A+ R N GM+ E ++ + E + TG + + Y
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL--------VEIVNYN 1847
Query: 79 APYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKLQV 134
Q + G + AL+ + ++L +K I +I+LQ
Sbjct: 1848 VENQQ-----YVAA-------GDL--RALDTVT----NVLNFIKLQ-KIDIIELQK 1884
>2wb9_A Glutathione transferase sigma class; thioredoxin fold; HET: GSH;
1.59A {Fasciola hepatica} PDB: 2wdu_A*
Length = 211
Score = 31.2 bits (71), Expect = 0.17
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 19/76 (25%)
Query: 81 YWQPDARGIICGITEDTTRGHIVRAALEA--ICFQ----TRDILEAMKKDC-GIQLIKLQ 133
Y+ RG R +R L + F+ T D +K G ++ L
Sbjct: 10 YF--QFRG----------RAEPIRLLLTCAGVKFEDYQFTMDQWPTIKPTLPGGRVPLLD 57
Query: 134 VDGGMTANKHLMQTQA 149
V G + ++ A
Sbjct: 58 VTGPDGKLRRYQESMA 73
>1oe8_A Glutathione S-transferase; schistosomiasis, detoxifying enzyme,
prostaglandin D2 synthase, vaccine candidate; HET: GSH;
1.65A {Schistosoma haematobium} SCOP: a.45.1.1 c.47.1.5
PDB: 1oe7_A* 2c80_A* 2ca8_A* 2f8f_A* 2c8u_A 2caq_A*
2cai_A* 1u3i_A*
Length = 211
Score = 30.5 bits (69), Expect = 0.24
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 19/76 (25%)
Query: 81 YWQPDARGIICGITEDTTRGHIVRAALEAI------CFQTRDILEAMKKDC-GIQLIKLQ 133
Y+ + RG R +R L A + +K G +L ++
Sbjct: 10 YF--NGRG----------RAESIRMTLVAAGVNYEDERISFQDWPKIKPTIPGGRLPAVK 57
Query: 134 VDGGMTANKHLMQTQA 149
+ K ++++ A
Sbjct: 58 ITDNHGHVKWMVESLA 73
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.70
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 28/56 (50%)
Query: 53 EEIESLAESHRHTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALE 108
+ ++ L S + LYA P A I +A +E
Sbjct: 20 QALKKLQASLK-------------LYADDSAP-ALAI--------------KATME 47
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP;
3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 458
Score = 28.9 bits (65), Expect = 1.1
Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 12/111 (10%)
Query: 52 VEEIESLAESHRHTG-DVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRA--ALE 108
+ EI+ L E+ P SG+ + + G T + +
Sbjct: 184 MREIKRLFEAM---DIPYIMFPDTSGVLDGPTTGEYKMYPEG---GTKIEDLKDTGNSDL 237
Query: 109 AICFQ---TRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
+ + + ++K C + L+ G++A + ++ G V
Sbjct: 238 TLSLGSYASDLGAKTLEKKCKVPFKTLRTPIGVSATDEFIMALSEATGKEV 288
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen
fixation, nitrogen metabolism, molybdoenzymes, electron
transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 29.0 bits (65), Expect = 1.3
Identities = 14/108 (12%), Positives = 34/108 (31%), Gaps = 7/108 (6%)
Query: 52 VEEIESLAESHRHTG-DVYFVPAFSGLYAPYWQPDARGIICGIT-EDTTRGHIVRAALEA 109
++ + E + S + R G T ++ L
Sbjct: 233 FRVLKRMMEQM---AVPCSLLSDPSEVLDTPADGHYRMYSGGTTQQEMKEAPDAIDTL-L 288
Query: 110 IC-FQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
+ +Q + +++ ++ + G+ A L+ T + L G P+
Sbjct: 289 LQPWQLLKSKKVVQEMWNQPATEVAIPLGLAATDELLMTVSQLSGKPI 336
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.5 bits (63), Expect = 1.4
Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 27/65 (41%)
Query: 82 WQPDARGII----CG-----ITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKL 132
P+ ++ C I E + G + +C CG+ L
Sbjct: 14 RGPNLNIVLTCPECKVYPPKIVERFSEG-------DVVC-----------ALCGLVLSDK 55
Query: 133 QVDGG 137
VD
Sbjct: 56 LVDTR 60
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Length = 95
Score = 26.8 bits (59), Expect = 2.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 89 IICGITEDTTRGHIVRAALEAIC 111
I+CG+TE TT +V A +AI
Sbjct: 20 IVCGVTEVTTCQEVVIALAQAIG 42
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B*
1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B*
3k1a_B* 3min_B*
Length = 523
Score = 27.8 bits (62), Expect = 2.5
Identities = 11/108 (10%), Positives = 31/108 (28%), Gaps = 7/108 (6%)
Query: 52 VEEIESLAESHRHTG-DVYFVPAFSGLYAPYWQPDARGIICGIT-EDTTRGHIVRAALEA 109
I+ + G + + R G T E+ +
Sbjct: 237 FRVIKRMLSEM---GVGYSLLSDPEEVLDTPADGQFRMYAGGTTQEEMKDAPNALNTV-L 292
Query: 110 IC-FQTRDILEAMKKDCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
+ + + ++ ++ KL + G+ + +++ G P+
Sbjct: 293 LQPWHLEKTKKFVEGTWKHEVPKLNIPMGLDWTDEFLMKVSEISGQPI 340
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 458
Score = 27.4 bits (61), Expect = 3.6
Identities = 24/144 (16%), Positives = 44/144 (30%), Gaps = 21/144 (14%)
Query: 20 GDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHRHTG-DVYFVPAFSG-L 77
V V V +A D +E I ES G +P SG L
Sbjct: 160 ERRDQVGKRPRQVNVLCSANLTPGD-------LEYIAESIES---FGLRPLLIPDLSGSL 209
Query: 78 YAPYWQPDARGIICGITEDTTRGHIVRAALEA-----ICFQTRDILEAMKKDCGIQLIKL 132
+ + G + + A ++ + +A+ + G+ +
Sbjct: 210 DGHLDENRFNALTTG---GLSVAEL-ATAGQSVATLVVGQSLAGAADALAERTGVPDRRF 265
Query: 133 QVDGGMTANKHLMQTQADLCGIPV 156
+ G+ A + A++ G PV
Sbjct: 266 GMLYGLDAVDAWLMALAEISGNPV 289
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 26.4 bits (59), Expect = 6.6
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 132 LQVDGGMTANKHLMQTQADLCGIP 155
L V GG +++ P
Sbjct: 243 LLVTGGAELGYGCKASRSTPVDAP 266
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 26.2 bits (57), Expect = 9.4
Identities = 24/133 (18%), Positives = 37/133 (27%), Gaps = 15/133 (11%)
Query: 37 AAMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFVPAFSG-----LYAPYWQPDARGIIC 91
A M + +E G + VP G L + + +
Sbjct: 62 AGMMMGDEAYAGSENFYHLE--RTVQELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAG 119
Query: 92 GITEDTTRGHIVRA---ALEAICFQTRDILEAMKKDCGIQLIKLQ-----VDGGMTANKH 143
+ TTR H + ++ + + D + I L KLQ A
Sbjct: 120 NMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYIC 179
Query: 144 LMQTQADLCGIPV 156
L T G PV
Sbjct: 180 LAVTVNLAGGQPV 192
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease,
type III secreted effec desumoylating enzyme; 1.80A
{Xanthomonas euvesicatoria} PDB: 2oiv_A
Length = 186
Score = 25.7 bits (56), Expect = 9.9
Identities = 6/67 (8%), Positives = 18/67 (26%), Gaps = 2/67 (2%)
Query: 38 AMNWLRDNVGMVTGVEEIESLAESHRHTGDVYFV-PAFSGLYAPYWQPDARGIICGITED 96
A +WL D + +++ + ++F + + + D
Sbjct: 1 ATSWLLDGH-LRAYTDDLARRLRGEPNAHLLHFADSQVVTMLSSADPDQQARAQRLLAGD 59
Query: 97 TTRGHIV 103
+
Sbjct: 60 DIPPIVF 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.422
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,208,499
Number of extensions: 194490
Number of successful extensions: 637
Number of sequences better than 10.0: 1
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 61
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.8 bits)