RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9355
(204 letters)
>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus
casseliflavus [TaxId: 37734]}
Length = 235
Score = 105 bits (262), Expect = 9e-29
Identities = 69/153 (45%), Positives = 97/153 (63%), Gaps = 1/153 (0%)
Query: 4 KVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
S LLTT+ + + + YALEGS+ VAG+A+ WLRD + M+ + E LA +
Sbjct: 24 PQLSDNDLLTTIGYGINGKVY-YALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAK 82
Query: 64 HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
+VY VPAF+GL APYW +ARG + G+T TT+ VRA L+A+ +Q++D+++ MKK
Sbjct: 83 GDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKK 142
Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
D GI + L+VDGG N LMQ QAD+ I V
Sbjct: 143 DSGIDIPLLKVDGGAAKNDLLMQFQADILDIDV 175
>d2p3ra2 c.55.1.4 (A:254-500) Glycerol kinase {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 103 bits (258), Expect = 5e-28
Identities = 77/153 (50%), Positives = 99/153 (64%), Gaps = 1/153 (0%)
Query: 4 KVDSRQGLLTTVAFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLAESHR 63
V S GLLTT+A E YALEG+V +AGA++ WLRD + ++ + E A +
Sbjct: 26 AVKSENGLLTTIACGPTGEVN-YALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQ 84
Query: 64 HTGDVYFVPAFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKK 123
+T VY VPAF+GL APYW P ARG I G+T HI+RA LE+I +QTRD+LEAM+
Sbjct: 85 NTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQA 144
Query: 124 DCGIQLIKLQVDGGMTANKHLMQTQADLCGIPV 156
D GI+L L+VDGG AN LMQ Q+D+ G V
Sbjct: 145 DSGIRLHALRVDGGAVANNFLMQFQSDILGTRV 177
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 41.0 bits (95), Expect = 3e-05
Identities = 14/144 (9%), Positives = 38/144 (26%), Gaps = 20/144 (13%)
Query: 16 AFKLGDEPVVYALEGSVAVAGAAMNWLRDNVGMVTGVEEIESLA---ESHRHTGDVYFVP 72
+ + + AG + V ++ L V
Sbjct: 109 VIHVENGTMTNFQMNDKCAAGTGRFLDVMANILEVKVSDLAELGAKSTKRVAISSTCTVF 168
Query: 73 AFSGLYAPYWQPDARGIICGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIKL 132
A S +I +++ T + I+ ++ + + + +
Sbjct: 169 AESE------------VISQLSKGTDKIDIIAGIHRSVASRVIGLANRVGIVK-----DV 211
Query: 133 QVDGGMTANKHLMQTQADLCGIPV 156
+ GG+ N + + G+ +
Sbjct: 212 VMTGGVAQNYGVRGALEEGLGVEI 235
>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus
casseliflavus [TaxId: 37734]}
Length = 252
Score = 39.4 bits (91), Expect = 1e-04
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 16/127 (12%)
Query: 91 CGITEDTTRGHIVRAALEAICFQTRDILEAMKKDCGIQLIK----LQVDGGMTANKHLMQ 146
+ D T G + A+ Q+ I + +K D ++I L +D +A K
Sbjct: 82 TTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFSATKVRWL 141
Query: 147 -----------TQADLCGIPVGKNLTGGKDGGK-YITDVSNASRTMLMNIETLEWDPMLC 194
+L + L G+ ++TD SNASRTML NI LEWD +
Sbjct: 142 LDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHVTDYSNASRTMLYNIHKLEWDQEIL 201
Query: 195 GVWEINM 201
+ I
Sbjct: 202 DLLNIPS 208
>d2p3ra1 c.55.1.4 (A:2-253) Glycerol kinase {Escherichia coli
[TaxId: 562]}
Length = 252
Score = 33.2 bits (75), Expect = 0.014
Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 24/149 (16%)
Query: 77 LYAPYWQPDARGIICGITE--------DTTRGHIVRAALEAICFQTRDILEAMKKDCGIQ 128
+ A + GIT + G + A+ C +T +I E +K+D
Sbjct: 62 VLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLED 121
Query: 129 LIK----LQVDGGMTANKHLMQTQ-----------ADLCGIPVGKNLTGGKDGGK-YITD 172
I+ L +D + K +L V L G+ ++TD
Sbjct: 122 YIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHVTD 181
Query: 173 VSNASRTMLMNIETLEWDPMLCGVWEINM 201
+NASRTML NI TL+WD + V +I
Sbjct: 182 YTNASRTMLFNIHTLDWDDKMLEVLDIPR 210
>d2gtln1 b.61.7.1 (N:102-229) Extracellular hemoglobin linker l2
subunit {Common earthworm (Lumbricus terrestris) [TaxId:
6398]}
Length = 128
Score = 27.5 bits (61), Expect = 0.72
Identities = 11/77 (14%), Positives = 16/77 (20%), Gaps = 17/77 (22%)
Query: 48 MVTGVEEIESLAESHRHTGDVYFVPAFSGLY----------APYWQPDARGIIC---GIT 94
+ + E E T G Y D ++C
Sbjct: 45 WLRALVESELERHGENVTS----SFNAKGYYNFASRRLILLPTDDHDDHLAVVCSFNRGD 100
Query: 95 EDTTRGHIVRAALEAIC 111
+ H V A C
Sbjct: 101 NERAECHRVTEATLHQC 117
>d2cs4a1 d.15.1.5 (A:8-91) Ras association domain-containing protein
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 26.6 bits (59), Expect = 0.82
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 89 IICGITEDTTRGHIVRAALEAI 110
I+CG+TE TT +V A +AI
Sbjct: 13 IVCGVTEVTTCQEVVIALAQAI 34
>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 25.3 bits (55), Expect = 3.2
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 155 PVGKNLTGGKDGGKYITDVSNASRTMLMNIETLEWDPMLCGVWEINM 201
P+G ++ G+ GG Y++ V+ S +E + G+ +
Sbjct: 31 PLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSA 77
>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella
flexneri [TaxId: 623]}
Length = 247
Score = 26.1 bits (57), Expect = 3.5
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 105 AALEAICFQTRDILEAMKKDCGIQLIKLQVD---GGMTANKHLMQTQADLCGIPV 156
A LE C+ L A + G ++L GG+T + ++++ IPV
Sbjct: 1 ALLEICCYSMECALTAQQ--NGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPV 53
>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean
(Phaseolus vulgaris), phaseolin [TaxId: 3885]}
Length = 200
Score = 25.7 bits (56), Expect = 3.6
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 14/57 (24%)
Query: 24 VVYALEGSVAVAGAAMNWLRDNVGMVT--GVEEIESLAESHRHTGDVYFVPAFSGLY 78
++ GS + +V E L + D +PA + Y
Sbjct: 65 LLVVRSGSA------------ILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFY 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.422
Gapped
Lambda K H
0.267 0.0651 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 762,852
Number of extensions: 33971
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 16
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)