BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9356
         (155 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ZY2|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp (High
           Resolution Dataset)
 pdb|3ZY3|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp
           (Crystal-Form-Iii)
 pdb|3ZY3|B Chain B, Crystal Structure Of Pofut1 In Complex With Gdp
           (Crystal-Form-Iii)
 pdb|3ZY4|A Chain A, Crystal Structure Of Pofut1 Apo-Form (Crystal-Form-I)
 pdb|3ZY5|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp-Fucose
           (Crystal-Form-I)
 pdb|3ZY6|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp-Fucose
           (Crystal-Form-Ii)
          Length = 362

 Score =  146 bits (369), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 8/154 (5%)

Query: 3   GRFGNQADNFLGALALAKGINRTLVLPPWVEYRYGEPKSIQVPFDTYFQVEPLQEYHRVM 62
           GRFGNQ D FLG LA AK ++RTLVLP ++E+++  P++  +PF+  FQV  + +Y RV+
Sbjct: 18  GRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH--PETKMIPFEFLFQVGTVAKYTRVV 75

Query: 63  TMEKFMQDIAPHIWPPHKRIAFCYMARGS----TNESSCNAKEGNPFGPFWDTYGIDFVG 118
           TM++F + I P +WPP KR AFC+  R +    + E  C++KEGNPFGP+WD   + FVG
Sbjct: 76  TMQEFTKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVG 135

Query: 119 SEFYG--PLHYDVHHSDIADHWKMRYPSDDWPGL 150
            E++G  P  +D++       W  ++PS+++P L
Sbjct: 136 DEYFGDIPGGFDLNQMGSRKKWLEKFPSEEYPVL 169


>pdb|3K0F|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
           Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
          Length = 519

 Score = 28.1 bits (61), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 3   GRFGNQADNFLGALALA----KGINRTLVLPPWVEYRYGEPKSIQV 44
           G F N +D F+GA ++A      I  T++L  +VE R    ++I V
Sbjct: 410 GLFTNTSDQFMGAHSIADSHISAITDTIILLQYVEIRGEMSRAINV 455


>pdb|3K0F|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
           Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
 pdb|3K0F|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
           Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
 pdb|3K0F|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
           Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
 pdb|3K0F|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
           Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
 pdb|3K0F|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
           Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
          Length = 519

 Score = 28.1 bits (61), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 3   GRFGNQADNFLGALALA----KGINRTLVLPPWVEYRYGEPKSIQV 44
           G F N +D F+GA ++A      I  T++L  +VE R    ++I V
Sbjct: 410 GLFTNTSDQFMGAHSIADSHIXAITDTIILLQYVEIRGEMSRAINV 455


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.141    0.478 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,434,983
Number of Sequences: 62578
Number of extensions: 224536
Number of successful extensions: 529
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 8
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)