Query psy9356
Match_columns 155
No_of_seqs 69 out of 71
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 17:02:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3849|consensus 100.0 1E-83 2.2E-88 557.5 9.6 155 1-155 37-193 (386)
2 PF10250 O-FucT: GDP-fucose pr 100.0 1.6E-33 3.5E-38 232.6 3.2 147 1-155 6-156 (351)
3 PF01531 Glyco_transf_11: Glyc 81.3 0.82 1.8E-05 38.7 1.4 31 2-32 38-68 (298)
4 KOG1584|consensus 44.1 11 0.00023 33.6 0.9 10 103-112 169-178 (297)
5 KOG4405|consensus 38.0 11 0.00023 36.0 0.0 9 1-9 269-277 (547)
6 PF09350 DUF1992: Domain of un 36.5 6.1 0.00013 27.7 -1.4 16 21-36 44-59 (71)
7 PHA03075 glutaredoxin-like pro 36.5 43 0.00094 26.6 3.1 61 18-80 62-123 (123)
8 COG5142 OXR1 Oxidation resista 27.6 41 0.00088 28.7 1.8 42 59-110 67-108 (212)
9 PF04066 MrpF_PhaF: Multiple r 25.1 47 0.001 21.9 1.4 14 11-24 42-55 (55)
10 PHA02609 uvsW.1 hypothetical p 24.5 38 0.00082 24.9 0.9 11 62-72 11-21 (76)
No 1
>KOG3849|consensus
Probab=100.00 E-value=1e-83 Score=557.48 Aligned_cols=155 Identities=50% Similarity=1.042 Sum_probs=151.8
Q ss_pred CCCCccchhHhhhhHHHHHhhccceeecCCeEeeecCCCceeeccCccceecccchhhhhhhhHHHHHHHhCCCCCCCCC
Q psy9356 1 SEGRFGNQADNFLGALALAKGINRTLVLPPWVEYRYGEPKSIQVPFDTYFQVEPLQEYHRVMTMEKFMQDIAPHIWPPHK 80 (155)
Q Consensus 1 CMGRFGNQadhFLGsLaFAK~lNRTLvlPPwieY~~~~~~~~~vPf~~yF~v~~L~~yhrvI~Me~Fm~~lAP~~WP~~~ 80 (155)
||||||||||||||+|||||+|||||||||||||++++.+|.||||+.||+||||++|||||||+|||++|||+|||+++
T Consensus 37 CMGRFGNQaDhFLGsLAFAKaLnRTL~lPpwiEy~~pe~~n~~vpf~~yF~vepl~~YhRVitm~dFm~klapthwp~~~ 116 (386)
T KOG3849|consen 37 CMGRFGNQADHFLGSLAFAKALNRTLVLPPWIEYKHPETKNLMVPFEFYFQVEPLAKYHRVITMQDFMKKLAPTHWPGTP 116 (386)
T ss_pred ccccccchHHHHHHHHHHHHHhcccccCCcchhccCCcccccccchhheeecccHhhhhhheeHHHHHHHhCcccCCCCc
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred eeeeeeecCCCCCCC--CCCCCCCCCCccCccccCceeccceeecCcccccCCchhHhhhhhhCCCCCCceeeeecC
Q psy9356 81 RIAFCYMARGSTNES--SCNAKEGNPFGPFWDTYGIDFVGSEFYGPLHYDVHHSDIADHWKMRYPSDDWPGLLIYLV 155 (155)
Q Consensus 81 R~~fC~~~r~~~~~~--~C~aKeGNPFGPFWD~~~VdF~~se~~~~l~~d~~~~~~~~~W~~~fP~~~~PVLAf~g~ 155 (155)
|+|||+....+++++ +||||||||||||||+|.|+|++||+|++|+||+++.++++||.+|||+++||||||+|.
T Consensus 117 Rva~c~k~a~qr~pdkp~Ch~KeGNPFGPfWDqfhvsFv~sE~f~~i~Fd~~~~~~~~kW~~kfp~eeyPVLAf~gA 193 (386)
T KOG3849|consen 117 RVAICDKSAAQRSPDKPGCHSKEGNPFGPFWDQFHVSFVGSEYFGDIGFDLNQMGSRKKWLEKFPSEEYPVLAFSGA 193 (386)
T ss_pred ceeeeehhhhccCCCCCCCcccCCCCCCCchhheEeeeeccccccccccchhhcchHHHHHhhCCcccCceeeecCC
Confidence 999999998887776 999999999999999999999999999999999999999999999999999999999984
No 2
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=99.97 E-value=1.6e-33 Score=232.57 Aligned_cols=147 Identities=35% Similarity=0.647 Sum_probs=105.6
Q ss_pred CCCCccchhHhhhhHHHHHhhccceeecCCeEeeecCCC--ceeeccCccceecccchhhh-hhhhHHHHHHHhCCCCCC
Q psy9356 1 SEGRFGNQADNFLGALALAKGINRTLVLPPWVEYRYGEP--KSIQVPFDTYFQVEPLQEYH-RVMTMEKFMQDIAPHIWP 77 (155)
Q Consensus 1 CMGRFGNQadhFLGsLaFAK~lNRTLvlPPwieY~~~~~--~~~~vPf~~yF~v~~L~~yh-rvI~Me~Fm~~lAP~~WP 77 (155)
|||+||||.++|+++++|||.||||||||||+...+.+. ...+|||+++|+|+.|++++ +||+|++|| |.+|+
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~----~~~~~ 81 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFL----PKHWD 81 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHH----HHHS-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheec----cchhc
Confidence 899999999999999999999999999999999655433 35789999999999999999 999999999 99999
Q ss_pred CCCeeeeeeecCCCCCCCCCCCCCCCCCccCccccCceeccceeecCc-ccccCCchhHhhhhhhCCCCCCceeeeecC
Q psy9356 78 PHKRIAFCYMARGSTNESSCNAKEGNPFGPFWDTYGIDFVGSEFYGPL-HYDVHHSDIADHWKMRYPSDDWPGLLIYLV 155 (155)
Q Consensus 78 ~~~R~~fC~~~r~~~~~~~C~aKeGNPFGPFWD~~~VdF~~se~~~~l-~~d~~~~~~~~~W~~~fP~~~~PVLAf~g~ 155 (155)
...|.++|+..+..... .-++|+|||++++||.+.+++..+++++.. .|-........+|.++ ++++|++|.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~ 156 (351)
T PF10250_consen 82 EVFRLQYCWSPWESGSW-DDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNEN---SEHPVIAFTGF 156 (351)
T ss_dssp GGG-EEEESS-B---------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHH---TT-SEEEESS-
T ss_pred cccchhhcccccccccc-hhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccc---cccccceeccc
Confidence 99999999998855433 226899999999999999999988844433 2322344567788777 99999999873
No 3
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=81.27 E-value=0.82 Score=38.70 Aligned_cols=31 Identities=35% Similarity=0.446 Sum_probs=27.1
Q ss_pred CCCccchhHhhhhHHHHHhhccceeecCCeE
Q psy9356 2 EGRFGNQADNFLGALALAKGINRTLVLPPWV 32 (155)
Q Consensus 2 MGRFGNQadhFLGsLaFAK~lNRTLvlPPwi 32 (155)
.||+|||+=++.-.++.||.++|+..+|.+.
T Consensus 38 ~g~LGNqmfqya~l~~lak~~~~~~~i~~~~ 68 (298)
T PF01531_consen 38 NGRLGNQMFQYASLYGLAKLNGRTAFIPISM 68 (298)
T ss_pred cchHHHHHhHHHHHHHHHHhcCCccccchHH
Confidence 5999999999888899999888888888653
No 4
>KOG1584|consensus
Probab=44.10 E-value=11 Score=33.60 Aligned_cols=10 Identities=50% Similarity=1.524 Sum_probs=9.2
Q ss_pred CCCccCcccc
Q psy9356 103 NPFGPFWDTY 112 (155)
Q Consensus 103 NPFGPFWD~~ 112 (155)
++|||||||.
T Consensus 169 ~~~Gp~~dHV 178 (297)
T KOG1584|consen 169 VPYGPWWDHV 178 (297)
T ss_pred CCcCChHHHH
Confidence 7999999996
No 5
>KOG4405|consensus
Probab=37.99 E-value=11 Score=35.99 Aligned_cols=9 Identities=67% Similarity=1.051 Sum_probs=6.9
Q ss_pred CCCCccchh
Q psy9356 1 SEGRFGNQA 9 (155)
Q Consensus 1 CMGRFGNQa 9 (155)
|||||||--
T Consensus 269 slGrfgntp 277 (547)
T KOG4405|consen 269 SLGRFGNTP 277 (547)
T ss_pred HhhccCCCc
Confidence 788998843
No 6
>PF09350 DUF1992: Domain of unknown function (DUF1992); InterPro: IPR018961 This entry represents a family of proteins that may have a role in protein folding or as a chaperone. DnaJ is a member of the J-protein family, which are defined by the presence of a J domain that can regulate the activity of 70kDa heat-shock proteins []. Some of the proteins in this entry contain a J domain.
Probab=36.46 E-value=6.1 Score=27.74 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=11.2
Q ss_pred hccceeecCCeEeeec
Q psy9356 21 GINRTLVLPPWVEYRY 36 (155)
Q Consensus 21 ~lNRTLvlPPwieY~~ 36 (155)
.|.++=+|||||+-+.
T Consensus 44 iLk~~g~lPp~i~l~k 59 (71)
T PF09350_consen 44 ILKNAGYLPPWIELRK 59 (71)
T ss_pred hhcccCCCCHHHHHHH
Confidence 3444449999998764
No 7
>PHA03075 glutaredoxin-like protein; Provisional
Probab=36.46 E-value=43 Score=26.59 Aligned_cols=61 Identities=13% Similarity=0.329 Sum_probs=40.4
Q ss_pred HHhhccceeecCCeEeeecCCCceeeccCccceecccchh-hhhhhhHHHHHHHhCCCCCCCCC
Q psy9356 18 LAKGINRTLVLPPWVEYRYGEPKSIQVPFDTYFQVEPLQE-YHRVMTMEKFMQDIAPHIWPPHK 80 (155)
Q Consensus 18 FAK~lNRTLvlPPwieY~~~~~~~~~vPf~~yF~v~~L~~-yhrvI~Me~Fm~~lAP~~WP~~~ 80 (155)
|.|.|..-.|+ -.-|..+...-..||+.+|+.+..+.+ +-+.=.+++=+++--..+|||.+
T Consensus 62 ~~~~lgne~v~--lfKydp~t~qmA~V~i~k~~~la~id~~~v~~d~L~~~Ie~a~ygvwpp~~ 123 (123)
T PHA03075 62 FFKHLGNEYVS--LFKYDPETKQMAFVDISKFLVLAQIDKSFVDLDQLKEEIEKAPYGVWPPPK 123 (123)
T ss_pred HHHhhcccEEE--EEEEcCCCCcEEEEehhHeeeeeecchhhcCHHHHHHHHHhCCCCcCCCCC
Confidence 45555544443 235654444446899999999999854 44555566666777778999864
No 8
>COG5142 OXR1 Oxidation resistance protein [DNA replication, recombination, and repair]
Probab=27.58 E-value=41 Score=28.75 Aligned_cols=42 Identities=26% Similarity=0.827 Sum_probs=32.8
Q ss_pred hhhhhHHHHHHHhCCCCCCCCCeeeeeeecCCCCCCCCCCCCCCCCCccCcc
Q psy9356 59 HRVMTMEKFMQDIAPHIWPPHKRIAFCYMARGSTNESSCNAKEGNPFGPFWD 110 (155)
Q Consensus 59 hrvI~Me~Fm~~lAP~~WP~~~R~~fC~~~r~~~~~~~C~aKeGNPFGPFWD 110 (155)
|.=-|+++|-+..+|.-|| -.|+||-- .|.-|+|.=||-|-.
T Consensus 67 ~~G~Sl~t~y~~~~~~~~~-frrvg~VL---------a~rd~dgd~FGaf~~ 108 (212)
T COG5142 67 ENGFSLRTFYESFGENEWP-FRRVGFVL---------ACRDKDGDLFGAFFE 108 (212)
T ss_pred hcchhHHHHHHHhCcccCc-ccCceEEE---------EEEcCCCCEeeeech
Confidence 4445777999999999999 66666654 488899999998753
No 9
>PF04066 MrpF_PhaF: Multiple resistance and pH regulation protein F (MrpF / PhaF); InterPro: IPR007208 Members of the PhaF/MrpF family are predicted to be integral membrane proteins with three transmembrane regions, involved in regulation of pH. PhaF is part of a potassium efflux system involved in pH regulation. It is also involved in symbiosis in Rhizobium meliloti (Sinorhizobium meliloti) []. MrpF is a part of a Na+/H+ antiporter complex, also involved in pH homeostasis. MrpF is thought to be an efflux system for Na+ and cholate []. The Mrp system in Gram-positive species may also have primary energisation capacities [].; GO: 0015075 ion transmembrane transporter activity, 0034220 ion transmembrane transport, 0016021 integral to membrane
Probab=25.14 E-value=47 Score=21.90 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=11.7
Q ss_pred hhhhHHHHHhhccc
Q psy9356 11 NFLGALALAKGINR 24 (155)
Q Consensus 11 hFLGsLaFAK~lNR 24 (155)
-|+|++++||-+-|
T Consensus 42 ~Fvgtva~arfl~r 55 (55)
T PF04066_consen 42 GFVGTVAFARFLER 55 (55)
T ss_pred HHHHHHHHHHHHcC
Confidence 48999999998765
No 10
>PHA02609 uvsW.1 hypothetical protein; Provisional
Probab=24.51 E-value=38 Score=24.91 Aligned_cols=11 Identities=36% Similarity=0.715 Sum_probs=9.5
Q ss_pred hhHHHHHHHhC
Q psy9356 62 MTMEKFMQDIA 72 (155)
Q Consensus 62 I~Me~Fm~~lA 72 (155)
-+.++||.+||
T Consensus 11 A~Id~Fm~Kia 21 (76)
T PHA02609 11 AAIDSFMSKIA 21 (76)
T ss_pred HHHHHHHHHHh
Confidence 37889999998
Done!